Fueling Immunity: Insights into Metabolism and Lymphocyte Function
Open accessAbstract
Lymphocyte Metabolism: Lymphocytes are highly dynamic cells, undergoing extensive proliferation upon infection and then reducing in number upon pathogen clearance. Lymphocytes also circulate through many different tissue environments that vary in their nutrient and oxygen availability. Recent studies have revealed changes in metabolic programming that facilitate this dynamic behavior. How these changes occur and the specific effects that they have on lymphocyte function and on the ultimate outcome of an infection are not well understood. Pearce et al. ( 1242454 ) review recent progress in this area, suggest how parallels might be found in studying the metabolic changes seen in tumor cells, and propose challenges for the future.
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Written from the paper’s full text.
TL;DR
This review argues that metabolic reprogramming is intricately linked to lymphocyte activation, differentiation, and function, drawing heavily on parallels with tumor cell metabolism. It highlights aerobic glycolysis, mitochondrial OXPHOS/ROS, amino acid and lipid pathways, metabolite signaling, and environmental nutrient/O₂ constraints as key determinants of T cell fate and effector responses.
Key findings
- Resting naïve T cells maintain low glycolysis and rely on OXPHOS or fatty acid oxidation (FAO); upon TCR activation, T cells shift to aerobic glycolysis (the Warburg effect) while still engaging OXPHOS, and memory T cells return to a catabolic OXPHOS/FAO profile with increased mitochondrial mass and spare respiratory capacity.
- Mitochondrial OXPHOS is also required for T cell activation: oligomycin blocks early activation markers and proliferation, mitochondrial ROS from complex III (Uqcrfs1) supports antigen-specific proliferation, and Ca²⁺ uptake drives TCA-cycle dehydrogenases, NADH, and ATP production.
- Tumor metabolism informs T cell biology: the Warburg effect supplies biosynthetic intermediates; PKM2 M2 is less efficient at PEP-to-pyruvate conversion but supports anabolic flux; serine biosynthesis, glutaminolysis, and reductive carboxylation of α-KG under hypoxia are relevant; IDH1 mutations occur in ∼12% of glioblastoma multiforme and produce 2-hydroxyglutarate.
- Metabolites act as signals: LKB1-AMPK senses adenylates and limits anabolic growth; α-KG-dependent dioxygenases are influenced by succinate, fumarate, and 2-HG; GAPDH can bind cytokine mRNA 3′UTRs and dampen IFN-γ translation when not engaged in glycolysis; standard culture media contain 25 mM glucose (five times blood glucose of 5 mM), 4 mM glutamine (eight times blood 0.5 mM), and 20% O₂ (two to four times blood/tissue levels).
Methods
- Design: narrative review synthesizing published literature from immunology and cancer metabolism; no primary experiments or new data are reported.
- Data/sample: cited studies on T cells, tumor cells, macrophages, dendritic cells, and B cells; no original sample or dataset.
- Main analysis: conceptual integration of metabolic pathways, signaling, and gene regulation, with proposed models and hypotheses for T cell fate and function.
Limitations
- The paper states technical challenges: metabolomics lacks a single global platform, cannot measure subcellular metabolite pools, measures steady-state levels rather than flux, and typically requires millions of cells, limiting analysis of rare T cell subsets.
- The paper states that in vitro models are hyperglycemic and hyperoxic relative to in vivo conditions, potentially causing experimental variance between culture and animal models.
- Evident from the text: as a narrative review, it does not use a systematic search or quantitative synthesis, and many proposed links (e.g., serine biosynthesis, reductive carboxylation, immunometabolites) are explicitly speculative and require future investigation.
Model-written summary. Check it against the paper before relying on it.
Integrity signals
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Cites
Statistics
Claims the paper makes
0 of 141 cited sources checked · 0 supported · 0 flagged
- Findingown data
T cell metabolism changes dynamically with activation state.
“Bioenergetic profiling of T cells has revealed that T cell metabolism changes dynamically with activation state (Fig. 1).”
Quote in the paperSubstantial claim - Findingcitation
Mitochondrial FAO stimulated downstream of TRAF6 is required for memory CD8+ T cell development.
“We previously demonstrated that mitochondrial FAO stimulated downstream of TNF (tumor necrosis factor) receptor–associated factor 6 (TRAF6) is required for memory CD8+ T cell development (17).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [17] Pearce EL Enhancing CD8 T-cell memory by modulating fatty acid metabolism Nature 2009 460 103 107 pmid: 19494812 19494812 PMC2803086 source
Not checked in the free run.
- Premisenone given
Regulation of cellular metabolism is integrated into the T cell activation program.
“Integrated into this program of activation is the regulation of cellular metabolism.”
Quote in the paperSubstantial claim - Premisenone given
Research on tumor cell metabolism has provided insight into metabolic pathways important for cell proliferation and the influence of metabolites on signal transduction and epigenetic programming.
“Research on tumor cell metabolism has provided valuable insight into metabolic pathways important for cell proliferation and the influence of metabolites themselves on signal transduction and epigenetic programming.”
Quote in the paperNot a substantial claim - Premisecitation
The predominant metabolic phenotype of activated T cells is a shift to aerobic glycolysis.
“The predominant metabolic phenotype of activated T cells is a shift to aerobic glycolysis [reviewed in (11)].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [11] MacIver NJ Michalek RD Rathmell JC Metabolic regulation of T lymphocytes Annu. Rev. Immunol 2013 31 259 283 pmid: 23298210 23298210 PMC3606674 source
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- Premisecitation
TCR-mediated up-regulation of the transcription factors c-Myc and estrogen-related receptor α (ERRα) enhances the expression of genes involved in intermediary metabolism.
“TCR-mediated up-regulation of the transcription factors c-Myc (9) and estrogen-related receptor α (ERRα) (10) enhances the expression of genes involved in intermediary metabolism.”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [9] Wang R The transcription factor Myc controls metabolic reprogramming upon T lymphocyte activation Immunity 2011 35 871 882 pmid: 22195744 22195744 PMC3248798 source
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- cites [10] Michalek RD Estrogen-related receptor-α is a metabolic regulator of effector T-cell activation and differentiation Proc. Natl. Acad. Sci. U.S.A 2011 108 18348 18353 pmid: 22042850 22042850 PMC3215012 source
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- Premisereasoning
Metabolism fundamentally underpins T cell function.
“Metabolism fundamentally underpins T cell function; thus, there is great interest in understanding how metabolic pathways influence immune responses and ultimately affect disease progression.”
Quote in the paperSubstantial claim - Premisereasoning
Upon activation, T cells switch to a program of anabolic growth and biomass accumulation, increasing demand for ATP and metabolic resources.
“Upon activation, T cells switch to a program of anabolic growth and biomass accumulation to generate daughter cells, which by definition dictates increased demand for ATP and metabolic resources.”
Quote in the paperSubstantial claim - Premisecitation
Both CD4+ and CD8+ effector T cells engage aerobic glycolysis, converting glucose-derived pyruvate to lactate despite the availability of oxygen for complete glucose oxidation.
“Both CD4+ and CD8+ TEFF cells engage aerobic glycolysis, which is marked by the conversion of glucose-derived pyruvate to lactate despite the availability of oxygen for complete glucose oxidation.”
Quote in the paperSubstantial claim - Premisecitation
In T lymphocytes, glucose is a critical substrate for ATP production.
“In T lymphocytes, glucose is a critical substrate for adenosine triphosphate (ATP) production (4).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [4] Greiner EF Guppy M Brand K Glucose is essential for proliferation and the glycolytic enzyme induction that provokes a transition to glycolytic energy production J. Biol. Chem 1994 269 31484 31490 pmid: 7989314 7989314 source
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- Premisereasoning
Upon activation, T cells dramatically alter metabolic activity to meet increased demands of growth, proliferation, and effector function.
“Upon activation, T cells dramatically alter their metabolic activity to meet the increased metabolic demands of cell growth, proliferation, and effector function.”
Quote in the paperSubstantial claim - Premisecitation
TCR signaling directs the metabolic reprogramming of naïve T cells.
“T cell receptor (TCR) signaling directs the metabolic reprogramming of naïve T cells.”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [6] Frauwirth KA The CD28 signaling pathway regulates glucose metabolism Immunity 2002 16 769 777 pmid: 12121659 12121659 source
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- cites [7] Carr EL Glutamine uptake and metabolism are coordinately regulated by ERK/MAPK during T lymphocyte activation J. Immunol 2010 185 1037 1044 pmid: 20554958 20554958 PMC2897897 source
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- cites [8] Sinclair LV Control of amino-acid transport by antigen receptors coordinates the metabolic reprogramming essential for T cell differentiation Nat. Immunol 2013 14 500 508 pmid: 23525088 23525088 PMC3672957 source
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- Interpretationcitation
Regulating energy metabolism may allow T cells to reversibly switch between quiescent and highly proliferative states.
“Regulating energy metabolism may provide a way for T cells to reversibly switch between quiescent and highly proliferative states (12).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [12] Pearce EL Metabolism in T cell activation and differentiation Curr. Opin. Immunol 2010 22 314 320 pmid: 20189791 20189791 PMC4486663 source
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- Premisecitation
TCR ligation promotes the coordinated up-regulation of glucose and amino acid transporters, facilitating nutrient uptake and T cell blastogenesis.
“TCR ligation promotes the coordinated up-regulation of glucose and amino acid transporters (6–8), facilitating nutrient uptake and T cell blastogenesis.”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [6] Frauwirth KA The CD28 signaling pathway regulates glucose metabolism Immunity 2002 16 769 777 pmid: 12121659 12121659 source
Not checked in the free run.
- cites [7] Carr EL Glutamine uptake and metabolism are coordinately regulated by ERK/MAPK during T lymphocyte activation J. Immunol 2010 185 1037 1044 pmid: 20554958 20554958 PMC2897897 source
Not checked in the free run.
- cites [8] Sinclair LV Control of amino-acid transport by antigen receptors coordinates the metabolic reprogramming essential for T cell differentiation Nat. Immunol 2013 14 500 508 pmid: 23525088 23525088 PMC3672957 source
Not checked in the free run.
- Premisereasoning
Resting naïve T cells maintain low rates of glycolysis and predominantly oxidize glucose-derived pyruvate via OXPHOS or engage fatty acid oxidation (FAO) to make ATP.
“Consistent with the metabolism of other nonproliferating cells, resting naïve T cells (T cells that have not yet encountered antigen) maintain low rates of glycolysis and predominantly oxidize glucose-derived pyruvate via OXPHOS or engage fatty acid oxidation (FAO) to make ATP.”
Quote in the paperSubstantial claim - Premisecitation
Catabolic pathways of ATP generation such as fatty acid β-oxidation are actively suppressed upon TCR activation.
“In addition, catabolic pathways of ATP generation such as fatty acid β-oxidation are actively suppressed (9).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [9] Wang R The transcription factor Myc controls metabolic reprogramming upon T lymphocyte activation Immunity 2011 35 871 882 pmid: 22195744 22195744 PMC3248798 source
Not checked in the free run.
- Interpretationreasoning
FAO may be a preferred fuel source for memory T cells because they rely on an OXPHOS-dependent metabolic program.
“FFAs are energy-dense molecules, and FAO may be a preferred fuel source for TM cells as they rely on OXPHOS-dependent metabolic program.”
Quote in the paperSubstantial claim - Interpretationreasoning
Intracellular Ca2+ flux may provide the functional link between TCR ligation, mitochondrial OXPHOS, and cell proliferation.
“Intracellular calcium (Ca2+) flux, an early event in TCR signal transduction, may provide the functional link between TCR ligation, mitochondrial OXPHOS, and cell proliferation.”
Quote in the paperSubstantial claim - Premisecitation
Mitochondrial OXPHOS is also important for T cell activation.
“Although much focus has been placed on the shift toward glycolysis that accompanies T cell activation, evidence suggests that mitochondrial OXPHOS is also important for T cell activation.”
Quote in the paperSubstantial claim - Premisecitation
Memory T cells display increased mitochondrial mass, translating into greater spare respiratory capacity relative to naïve or effector T cells.
“However, TM cells also display a characteristic increase in mitochondrial mass, which translates into greater mitochondrial spare respiratory capacity (SRC) relative to naïve or TEFF populations (13).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [13] van der Windt GJ Mitochondrial respiratory capacity is a critical regulator of CD8+ T cell memory development Immunity 2012 36 68 78 pmid: 22206904 22206904 PMC3269311 source
Not checked in the free run.
- Interpretationreasoning
Changes in metabolism may influence the transition of T cells from effector to memory states.
“The mechanisms governing the transition of T cells from effector to memory states are still poorly understood, but recent work hints that changes in metabolism may influence this process.”
Quote in the paperSubstantial claim - Interpretationreasoning
Mitochondrial-derived ROS may function as a bioenergetic second messenger.
“Mitochondrial-derived reactive oxygen species (ROS) may function as such a “bioenergetic” second messenger.”
Quote in the paperSubstantial claim - Premisecitation
Uptake of Ca2+ by mitochondria stimulates Ca2+-dependent dehydrogenases of the TCA cycle, driving mitochondrial NADH production and ATP production by OXPHOS during early T cell activation.
“Uptake of Ca2+ by mitochondria stimulates Ca2+-dependent dehydrogenases of the TCA cycle, driving mitochondrial NADH production and ATP production by OXPHOS during early T cell activation (32).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [32] Krauss S Brand MD Buttgereit F Signaling takes a breath—New quantitative perspectives on bioenergetics and signal transduction Immunity 2001 15 497 502 pmid: 11672532 11672532 source
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- Premisecitation
IL-15 plays a key role in the catabolic switch of memory T cells by promoting mitochondrial biogenesis.
“The memory T cell–promoting cytokine interleukin (IL)–15 plays a key role in this catabolic switch by promoting mitochondrial biogenesis (13).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [13] van der Windt GJ Mitochondrial respiratory capacity is a critical regulator of CD8+ T cell memory development Immunity 2012 36 68 78 pmid: 22206904 22206904 PMC3269311 source
Not checked in the free run.
- Premisecitation
Rapamycin, which inhibits mTORC1, enhances generation of CD8 memory T cells.
“Consistent with this, the drug rapamycin, which also inhibits mTORC1, enhances the generation of CD8 TM cells (17, 19, 20).”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [17] Pearce EL Enhancing CD8 T-cell memory by modulating fatty acid metabolism Nature 2009 460 103 107 pmid: 19494812 19494812 PMC2803086 source
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- cites [19] Rao RR Li Q Odunsi K Shrikant PA The mTOR kinase determines effector versus memory CD8+ T cell fate by regulating the expression of transcription factors T-bet and Eomesodermin Immunity 2010 32 67 78 pmid: 20060330 20060330 PMC5836496 source
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- cites [20] Araki K mTOR regulates memory CD8 T-cell differentiation Nature 2009 460 108 112 pmid: 19543266 19543266 PMC2710807 source
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- Premisecitation
TH17 cells display increased reliance on glycolysis for their development and maintenance.
“In particular, TH17 cells display increased reliance on glycolysis for their development and maintenance.”
Quote in the paperSubstantial claim - Interpretationreasoning
Memory T cell formation may be influenced by enzymes and transporters involved in fatty acid synthesis, desaturation, and oxidation, as well as FFA availability to memory precursor cells.
“Given these observations, TM formation may be influenced by a number of enzymes and transporters involved in fatty acid synthesis, desaturation, and oxidation, as well as the availability of FFAs to memory precursor cells.”
Quote in the paperSubstantial claim - Premisecitation
The metabolic signature of T cells can vary depending on differentiation state.
“Although the paradigm of T cell metabolism as summarized in Fig. 1 holds true with respect to activated versus quiescent states, the metabolic signature of T cells can also vary depending on differentiation state.”
Quote in the paperSubstantial claim - Premisecitation
Proper induction of autophagy is important for maintenance of cellular bioenergetics and sustained T cell viability after activation.
“Proper induction of autophagy has been shown to be important for the maintenance of cellular bioenergetics and sustained T cell viability after activation (25, 26).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [25] Hubbard VM Macroautophagy regulates energy metabolism during effector T cell activation J. Immunol 2010 185 7349 7357 pmid: 21059894 21059894 PMC3046774 source
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- cites [26] Pua HH Dzhagalov I Chuck M Mizushima N He YW A critical role for the autophagy gene Atg5 in T cell survival and proliferation J. Exp. Med 2007 204 25 31 pmid: 17190837 17190837 PMC2118420 source
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- Premisecitation
Under increased workload, stress, or nutrient limitation, cells engage spare respiratory capacity to generate more energy and promote viability.
“Under increased workload, stress, or nutrient limitation, cells engage this reserve capacity to generate more energy and promote cell viability (14, 15).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [14] Yadava N Nicholls DG Spare respiratory capacity rather than oxidative stress regulates glutamate excitotoxicity after partial respiratory inhibition of mitochondrial complex I with rotenone J. Neurosci 2007 27 7310 7317 pmid: 17611283 17611283 PMC6794596 source
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- cites [15] Nicholls DG Spare respiratory capacity, oxidative stress and excitotoxicity Biochem. Soc. Trans 2009 37 1385 1388 pmid: 19909281 19909281 source
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- Premisecitation
ROS can play critical roles in shaping T cell responses.
“There has long been evidence that ROS can play critical roles in shaping T cell responses (28–30).”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [28] Chaudhri G Clark IA Hunt NH Cowden WB Ceredig R Effect of antioxidants on primary alloantigen-induced T cell activation and proliferation J. Immunol 1986 137 2646 2652 pmid: 2944959 2944959 source
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- cites [29] Devadas S Zaritskaya L Rhee SG Oberley L Williams MS Discrete generation of superoxide and hydrogen peroxide by T cell receptor stimulation: Selective regulation of mitogen-activated protein kinase activation and fas ligand expression J. Exp. Med 2002 195 59 70 pmid: 11781366 11781366 PMC2196010 source
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- cites [30] Jackson SH Devadas S Kwon J Pinto LA Williams MS T cells express a phagocyte-type NADPH oxidase that is activated after T cell receptor stimulation Nat. Immunol 2004 5 818 827 pmid: 15258578 15258578 source
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- Premisecitation
Administration of metformin enhances generation of CD8+ T cell memory.
“Administration of metformin, a metabolic stressor that activates the energy sensor adenosine monophosphate–activated protein kinase (AMPK), enhances the generation of CD8+ T cell memory (17).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [17] Pearce EL Enhancing CD8 T-cell memory by modulating fatty acid metabolism Nature 2009 460 103 107 pmid: 19494812 19494812 PMC2803086 source
Not checked in the free run.
- Interpretationreasoning
Memory T cells may be viewed as metabolically primed, with mitochondrial metabolism fueling rapid recall response to reinfection.
“From this vantage, TM cells may be viewed as being metabolically primed, with mitochondrial metabolism fueling the rapid recall response to reinfection.”
Quote in the paperSubstantial claim - Premisecitation
AMPK activation suppresses mTORC1 activity in response to energetic stress.
“One consequence of AMPK activation is the suppression of mammalian target of rapamycin complex 1 (mTORC1) activity in response to energetic stress (18).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [18] Shackelford DB Shaw RJ The LKB1-AMPK pathway: Metabolism and growth control in tumour suppression Nat. Rev. Cancer 2009 9 563 575 pmid: 19629071 19629071 PMC2756045 source
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- Interpretationcitation
Mitochondrial-dependent ROS may prime T cells and license full T cell activation.
“Thus, although toxic in many biological settings, mitochondrial-dependent ROS may prime T cells and license full T cell activation.”
Quote in the paperSubstantial claim - Premisereasoning
Memory T cells adopt a catabolic metabolic profile similar to naïve T cells, with increased reliance on OXPHOS and lower nutrient uptake and biosynthesis relative to effector T cells.
“As a quiescent T cell population, TM cells adopt a metabolic profile similar to that of naïve T cells—a catabolic metabolism characterized by increased reliance on OXPHOS and lower rates of nutrient uptake and biosynthesis relative to TEFF cells (Fig. 1).”
Quote in the paperSubstantial claim - Interpretationreasoning
Manipulating metabolism of antigen-specific cells during contraction can influence development of memory T cells.
“These observations suggest that manipulating the metabolism of antigen-specific cells during contraction can influence the development of TM cells.”
Quote in the paperSubstantial claim - Premisecitation
Mitochondrial ROS produced during OXPHOS is essential for T cell activation.
“However, recent work suggests that mitochondrial ROS produced during OXPHOS is essential for T cell activation.”
Quote in the paperSubstantial claim - Premisecitation
CD8+ T cells unable to engage acetyl-CoA-dependent lipid biosynthetic pathways display defects in antigen-driven blastogenesis and clonal expansion in response to pathogens.
“CD8+ T cells unable to engage acetyl-CoA–dependent lipid biosynthetic pathways display defects in antigen-driven blastogenesis and clonal expansion in response to pathogens (48).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [48] Kidani Y Sterol regulatory element-binding proteins are essential for the metabolic programming of effector T cells and adaptive immunity Nat. Immunol 2013 14 489 499 pmid: 23563690 23563690 PMC3652626 source
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- Premisecitation
Glucose availability and acetyl-CoA production can influence epigenetics by regulating cytosolic acetyl-CoA pools for histone acetylation.
“Glucose availability and acetyl-CoA production can also influence epigenetics by regulating the cytosolic acetyl-CoA pools available for histone acetylation reactions (51), raising the prospect that glucose-dependent metabolic flux may help drive or reinforce T cell differentiation programs.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [51] Wellen KE ATP-citrate lyase links cellular metabolism to histone acetylation Science 2009 324 1076 1080 pmid: 19461003 19461003 PMC2746744 source
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- Interpretationreasoning
Using glucose-derived mitochondrial citrate for lipid biosynthesis can potentially deplete TCA cycle intermediates.
“One consequence of using glucose-derived mitochondrial citrate for lipid biosynthesis is the potential depletion of TCA cycle intermediates.”
Quote in the paperSubstantial claim - Premisereasoning
Activation of signal transduction pathways by growth factor receptors stimulates global changes in metabolic flux independent of ATP levels.
“Although allosteric regulation is important for regulating local flux through metabolic pathways, we now understand that activation of signal transduction pathways (such as phosphatidylinositol 3-kinase or Akt) by growth factor receptors stimulates global changes in metabolic flux independent of ATP levels.”
Quote in the paperSubstantial claim - Interpretationreasoning
Oncogenes and tumor suppressors gain control over metabolic currency and metabolites influencing cell growth and survival by influencing metabolic reprogramming.
“By directly influencing metabolic reprogramming, oncogenes and tumor suppressors gain control over the metabolic currency of the cell, namely, energetic intermediates (ATP, NAD+/NADH, FAD+/FADH2, and NADP+/NADPH) and metabolites involved in bioenergetic and biosynthetic reactions that influence cell growth and survival.”
Quote in the paperNot a substantial claim - Interpretationreasoning
Metabolic pathways are indirectly connected to cell surface receptors of the immune system via signal transduction pathways.
“The implication of these findings for immunologists is that metabolic pathways are indirectly connected to cell surface receptors of the immune system via signal transduction pathways.”
Quote in the paperSubstantial claim - Premisecitation
Acetyl-CoA can influence metabolic flux through acetylation of metabolic enzymes, reinforcing pathways such as glycolysis when carbon availability is high.
“Acetyl-CoA can also influence metabolic flux through acetylation of metabolic enzymes (49, 50), reinforcing metabolic pathways such as glycolysis when carbon availability is high.”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [49] Wang Q Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux Science 2010 327 1004 1007 pmid: 20167787 20167787 PMC4183141 source
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- cites [50] Zhao S Regulation of cellular metabolism by protein lysine acetylation Science 2010 327 1000 1004 pmid: 20167786 20167786 PMC3232675 source
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- Premisereasoning
Many metabolic pathways abnormally activated in cancer, such as aerobic glycolysis, play similar roles in normal lymphocyte physiology.
“Many of the metabolic pathways abnormally activated in cancer, such as aerobic glycolysis, have been shown to play similar roles in normal lymphocyte physiology.”
Quote in the paperSubstantial claim - Premisecitation
In proliferating cells, mitochondria adopt an additional role as a biosynthetic hub, converting pyruvate and other metabolites into intermediates for protein and fatty acid biosynthesis.
“In proliferating cells, mitochondria adopt an additional role as a biosynthetic hub, converting pyruvate and other metabolites into metabolic intermediates involved in protein and fatty acid biosynthesis (44).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [44] DeBerardinis RJ Sayed N Ditsworth D Thompson CB Brick by brick: Metabolism and tumor cell growth Curr. Opin. Genet. Dev 2008 18 54 61 pmid: 18387799 18387799 PMC2476215 source
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- Premisereasoning
Oncogenes and tumor suppressors can influence cellular metabolism as part of their program of action.
“One of the great innovations we have learned from the cancer metabolism field is that signaling pathways, or more specifically the oncogenes and tumor suppressors that comprise and regulate signal transduction pathways, can influence cellular metabolism as part of their program of action.”
Quote in the paperSubstantial claim - Premisecitation
Glutamine is a key metabolite for supporting T cell function.
“Glutamine has long been known as a key metabolite for supporting T cell function (52).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [52] Griffiths M Keast D The effect of glutamine on murine splenic leukocyte responses to T and B cell mitogens Immunol. Cell Biol 1990 68 405 408 pmid: 2097296 2097296 source
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- Premisecitation
Flow of glucose to the cytosolic acetyl-CoA pool is regulated by using TCA cycle intermediates and a truncated TCA cycle.
“The flow of glucose to the cytosolic acetyl-CoA pool is regulated by using TCA cycle intermediates and a truncated TCA cycle (46).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [46] DeBerardinis RJ Lum JJ Hatzivassiliou G Thompson CB The biology of cancer: Metabolic reprogramming fuels cell growth and proliferation Cell Metab 2008 7 11 20 pmid: 18177721 18177721 source
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- Premisecitation
Despite the availability of extracellular lipids for membrane biosynthesis, FFAs are generated de novo from glucose in proliferating cells using this pathway.
“Despite the availability of extracellular lipids for membrane biosynthesis, FFAs are generated de novo from glucose in proliferating cells using this pathway (46).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [46] DeBerardinis RJ Lum JJ Hatzivassiliou G Thompson CB The biology of cancer: Metabolic reprogramming fuels cell growth and proliferation Cell Metab 2008 7 11 20 pmid: 18177721 18177721 source
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- Premisereasoning
Tumor cells counter potential TCA cycle depletion by engaging glutaminolysis, converting glutamine into α-KG for TCA cycle.
“One way tumor cells counter this is by engaging glutaminolysis, a metabolic shunt that converts glutamine into α-ketoglutarate (α-KG, also known as 2-oxoglutarate) for use in the TCA cycle (Fig. 2).”
Quote in the paperNot a substantial claim - Premisecitation
Glutamine metabolism is as dynamically regulated in T cells as glucose metabolism.
“Recent evidence suggests that glutamine metabolism is as dynamically regulated in T cells as glucose metabolism.”
Quote in the paperNot a substantial claim - Premisecitation
The previous paradigm argued metabolic pathways were exclusively controlled through allosteric regulation of metabolic enzymes by ATP or metabolites.
“The previous paradigm of metabolic regulation argued that metabolic pathways were exclusively controlled through allosteric regulation of metabolic enzymes, either by ATP levels or metabolites themselves (the reactive model) (40).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [40] Ward PS Thompson CB Metabolic reprogramming: A cancer hallmark even Warburg did not anticipate Cancer Cell 2012 21 297 308 pmid: 22439925 22439925 PMC3311998 source
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- Interpretationreasoning
A proliferative signal allows a cell to drive cellular metabolism above quiescent capacity.
“This allows a cell that receives a proliferative signal, such as a T cell activated through its TCR, to drive cellular metabolism above the capacity normally maintained in the quiescent state.”
Quote in the paperSubstantial claim - Interpretationreasoning
OAA generated from ACL-mediated cleavage of cytosolic citrate can potentially cycle back into mitochondria to maintain TCA cycle.
“OAA generated from ACL-mediated cleavage of cytosolic citrate can potentially cycle back into the mitochondria to maintain the TCA cycle.”
Quote in the paperNot a substantial claim - Premisecitation
T cell activation promotes rapid increase in glucose flux through the oxidative pentose phosphate pathway.
“T cell activation promotes a rapid increase in glucose flux through the oxidative PPP (9).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [9] Wang R The transcription factor Myc controls metabolic reprogramming upon T lymphocyte activation Immunity 2011 35 871 882 pmid: 22195744 22195744 PMC3248798 source
Not checked in the free run.
- Premisenone given
Research into tumor cell metabolism has provided valuable insight into metabolic pathways important for cell proliferation.
“In this regard, research into tumor cell metabolism has provided valuable insight into the metabolic pathways important for cell proliferation.”
Quote in the paperSubstantial claim - Interpretationreasoning
Enhanced flux through the SBP may confer a growth advantage to tumor cells beyond providing increased serine and glycine for biosynthetic reactions.
“Enhanced flux through the SBP may confer a growth advantage to tumor cells beyond providing increased serine and glycine for biosynthetic reactions.”
Quote in the paperNot a substantial claim - Premisecitation
Glutamine transporters (SNAT1, SNAT2) and key glutaminolysis enzymes (GLS, GPT, GOT, GLUD) are up-regulated early after T cell activation similar to glycolysis genes.
“Glutamine transporters (SNAT1 and SNAT2) as well as key glutaminolysis enzymes (GLS, GPT, GOT, and GLUD) are up-regulated early after T cell activation similar to glycolysis genes (7, 9); several groups have correlated these changes in gene expression to enhanced glutaminolytic flux in lymphocytes (9, 53).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [7] Carr EL Glutamine uptake and metabolism are coordinately regulated by ERK/MAPK during T lymphocyte activation J. Immunol 2010 185 1037 1044 pmid: 20554958 20554958 PMC2897897 source
Not checked in the free run.
- cites [9] Wang R The transcription factor Myc controls metabolic reprogramming upon T lymphocyte activation Immunity 2011 35 871 882 pmid: 22195744 22195744 PMC3248798 source
Not checked in the free run.
- Premisecitation
In proliferating cells, the TCA cycle functions as a source of biosynthetic precursors in addition to its role in ATP production.
“As mentioned previously, it is now appreciated that in proliferating cells the TCA cycle functions as a source of biosynthetic precursors in addition to its role in ATP production (46).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [46] DeBerardinis RJ Lum JJ Hatzivassiliou G Thompson CB The biology of cancer: Metabolic reprogramming fuels cell growth and proliferation Cell Metab 2008 7 11 20 pmid: 18177721 18177721 source
Not checked in the free run.
- Premisecitation
Cancer cells actively produce GSH from glucose via the SBP as a buffer against oxidative damage.
“Recent evidence indicates that cancer cells actively produce GSH from glucose via the SBP as a buffer against oxidative damage (67).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [67] Maddocks OD Serine starvation induces stress and p53-dependent metabolic remodelling in cancer cells Nature 2013 493 542 546 pmid: 23242140 23242140 PMC6485472 source
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- Premisenone given
Amino acid influx via Slc7a5 is required for activation of mTOR and expression of c-Myc, coordinating activation-induced metabolic reprogramming and differentiation of T cells.
“Amino acid influx via this transporter is required for the activation of mTOR and expression of c-Myc and as such coordinates activation-induced metabolic reprogramming and differentiation of T cells.”
Quote in the paperSubstantial claim - Premisecitation
PKM2 may exert effects on cell proliferation through nonmetabolic functions, including transcriptional and epigenetic regulation.
“PKM2 may also exert some of its effects on cell proliferation through nonmetabolic functions, including transcriptional and epigenetic regulation (61, 62).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [61] Luo W Pyruvate kinase M2 is a PHD3-stimulated coactivator for hypoxia-inducible factor 1 Cell 2011 145 732 744 pmid: 21620138 21620138 PMC3130564 source
Not checked in the free run.
- cites [62] Yang W PKM2 phosphorylates histone H3 and promotes gene transcription and tumorigenesis Cell 2012 150 685 696 pmid: 22901803 22901803 PMC3431020 source
Not checked in the free run.
- Premisecitation
PHGDH amplification has been observed in breast cancer and melanoma.
“Amplification of PHGDH has been observed in breast cancer and melanoma (65), and increased PHGDH expression can promote both enhanced serine biosynthesis and the proliferation of cancer cells (65, 66).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [65] Locasale JW Phosphoglycerate dehydrogenase diverts glycolytic flux and contributes to oncogenesis Nat. Genet 2011 43 869 874 pmid: 21804546 21804546 PMC3677549 source
Not checked in the free run.
- Interpretationreasoning
The answer may lie with the second function of Warburg metabolism, supporting anabolic growth.
“The answer to this question may lie with the second function of Warburg metabolism, namely, supporting anabolic growth.”
Quote in the paperSubstantial claim - Premisecitation
PKM2 can phosphorylate STAT3 at Tyr705, promoting increased STAT3-dependent transcription.
“Of particular interest to immunologists is that PKM2 can phosphorylate signal transducer and activator of transcription 3 (STAT3) at Tyr705, promoting increased STAT3-dependent transcription (63).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [63] Gao X Wang H Yang JJ Liu X Liu ZR Pyruvate kinase M2 regulates gene transcription by acting as a protein kinase Mol. Cell 2012 45 598 609 pmid: 22306293 22306293 PMC3299833 source
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- Premisecitation
Growth-factor-stimulated tyrosine phosphorylation of PKM2 decreases its activity.
“Moreover, growth-factor–stimulated tyrosine phosphorylation of PKM2 further decreases its activity (58, 59).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [58] Christofk HR Vander Heiden MG Wu N Asara JM Cantley LC Pyruvate kinase M2 is a phosphotyrosine-binding protein Nature 2008 452 181 186 pmid: 18337815 18337815 source
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- cites [59] Hitosugi T Tyrosine phosphorylation inhibits PKM2 to promote the Warburg effect and tumor growth Sci. Signal 2009 2 ra73 pmid: 19920251 19920251 PMC2812789 source
Not checked in the free run.
- Premisecitation
The expression of SBP enzymes is up-regulated in Myc-driven lymphomas.
“The expression of SBP enzymes is up-regulated in Myc-driven lymphomas (68); thus, we hypothesize that TEFF cells may actively engage the SBP upon activation, even in the”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [68] Nilsson LM Mouse genetics suggests cell-context dependency for Myc-regulated metabolic enzymes during tumorigenesis PLoS Genet 2012 8 e1002573 pmid: 22438825 22438825 PMC3305401 source
Not checked in the free run.
- Interpretationreasoning
The ability of PKM2 to support cell proliferation may have less to do with ATP production and more with supporting biosynthetic pathways required for tumor cell growth.
“Thus, the ability of PKM2 to support cell proliferation may have less to do with ATP production and more with supporting biosynthetic pathways required for tumor cell growth.”
Quote in the paperSubstantial claim - Premisereasoning
PKM2 plays a role in coordinating glycolytic flux and cell proliferation.
“Multiple lines of evidence point to a role for PKM2 in coordinating glycolytic flux and cell proliferation.”
Quote in the paperSubstantial claim - Interpretationreasoning
Buildup of PEP due to reduced PKM2 activity promotes accumulation of glycolytic intermediates that can be shunted into upstream biosynthetic pathways to support amino acid, triglyceride, and nucleotide biosynthesis.
“Buildup of PEP because of reduced PKM2 activity promotes the accumulation of glycolytic intermediates, which can then be shunted into upstream biosynthetic pathways to support amino acid, triglyceride, and nucleotide biosynthesis.”
Quote in the paperSubstantial claim - Premisecitation
TCR engagement leads to expression of Slc7a5, an amino acid transporter mediating import of large neutral amino acids such as leucine.
“Recently, it was found that engagement of the TCR leads to the expression of Slc7a5, an amino acid transporter that mediates the import of large neutral amino acids, such as leucine (8).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [8] Sinclair LV Control of amino-acid transport by antigen receptors coordinates the metabolic reprogramming essential for T cell differentiation Nat. Immunol 2013 14 500 508 pmid: 23525088 23525088 PMC3672957 source
Not checked in the free run.
- Premisenone given
Glucose-dependent serine biosynthesis is actively engaged in some tumors regardless of serine abundance.
“However, glucose-dependent serine biosynthesis is actively engaged in some tumors regardless of serine abundance.”
Quote in the paperNot a substantial claim - Premisecitation
Changes in expression of glutaminolysis genes correlate with enhanced glutaminolytic flux in lymphocytes.
“Glutamine transporters (SNAT1 and SNAT2) as well as key glutaminolysis enzymes (GLS, GPT, GOT, and GLUD) are up-regulated early after T cell activation similar to glycolysis genes (7, 9); several groups have correlated these changes in gene expression to enhanced glutaminolytic flux in lymphocytes (9, 53).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [9] Wang R The transcription factor Myc controls metabolic reprogramming upon T lymphocyte activation Immunity 2011 35 871 882 pmid: 22195744 22195744 PMC3248798 source
Not checked in the free run.
- cites [53] Le A Glucose-independent glutamine metabolism via TCA cycling for proliferation and survival in B cells Cell Metab 2012 15 110 121 pmid: 22225880 22225880 PMC3345194 source
Not checked in the free run.
- Premisenone given
M2 isoform is less efficient at converting PEP to pyruvate than M1 isoform.
“Interestingly, the M2 isoform is actually less efficient at converting PEP to pyruvate than the M1 isoform.”
Quote in the paperSubstantial claim - Premisereasoning
Elevation of the cellular AMP:ATP ratio leads to increased phosphorylation of AMPK at Thr172 of its activation loop by the kinase LKB1.
“Elevation of the cellular AMP:ATP ratio leads to increased phosphorylation of AMPK at Thr172 of its activation loop by the kinase LKB1 (Fig. 4A).”
Quote in the paperNot a substantial claim - Interpretationreasoning
Stabilization of HIF-1α and metabolic reprogramming to favor reductive carboxylation may help T cells maintain proliferation and/or effector function at hypoxic inflammatory sites.
“Stabilization of HIF-1α and metabolic reprogramming to favor reductive carboxylation may help T cells maintain proliferation and/or effector function at hypoxic inflammatory sites.”
Quote in the paperSubstantial claim - Interpretationreasoning
These results have shifted thinking in cancer biology to consider that specific metabolites may also act as signaling molecules to influence cell physiology.
“These results have shifted thinking in cancer biology to consider that specific metabolites may also act as signaling molecules to influence cell physiology.”
Quote in the paperSubstantial claim - Premisecitation
The IDH1 mutation alters the enzymatic ability of IDH1, allowing it to convert α-KG to 2-hydroxyglutarate (2-HG) rather than promote normal isocitrate-to-α-KG inter-conversion.
“This mutation alters the enzymatic ability of IDH1, allowing it to convert α-KG to 2-hydroxyglutarate (2-HG) rather than promote normal isocitrate–to–α-KG inter-conversion (78).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [78] Dang L Cancer-associated IDH1 mutations produce 2-hydroxyglutarate Nature 2009 462 739 744 pmid: 19935646 19935646 PMC2818760 source
Not checked in the free run.
- Premisecitation
T cells are likely to experience hypoxia at sites of tissue inflammation.
“Moreover, T cells are likely to experience hypoxia at sites of tissue inflammation (74).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [74] Eltzschig HK Carmeliet P Hypoxia and inflammation N. Engl. J. Med 2011 364 656 665 pmid: 21323543 21323543 PMC3930928 source
Not checked in the free run.
- Premisecitation
The switch to reductive versus oxidative metabolism of α-KG is regulated in part by HIF-1α.
“This switch to reductive versus oxidative metabolism of α-KG is regulated in part by HIF-1α (71, 72), although the exact mechanism by which HIF-1α does so remains unclear.”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [71] Metallo CM Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia Nature 2012 481 380 384 pmid: 22101433 22101433 PMC3710581 source
Not checked in the free run.
- cites [72] Wise DR Hypoxia promotes isocitrate dehydrogenase-dependent carboxylation of α-ketoglutarate to citrate to support cell growth and viability Proc. Natl. Acad. Sci. U.S.A 2011 108 19611 19616 pmid: 22106302 22106302 PMC3241793 source
Not checked in the free run.
- Premisecitation
T cells can use reductive glutamine metabolism for fatty acid biosynthesis under hypoxic conditions.
“The work from Metallo and colleagues (71) suggests that T cells can use reductive glutamine metabolism for fatty acid biosynthesis under hypoxic conditions.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [71] Metallo CM Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia Nature 2012 481 380 384 pmid: 22101433 22101433 PMC3710581 source
Not checked in the free run.
- Premisecitation
Glycolysis is enhanced in resting AMPKα-deficient T cells.
“Glycolysis is enhanced in resting AMPKα-deficient T cells (88), consistent with observations that silencing AMPK in tumor cells promotes the Warburg effect (89).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [88] MacIver NJ The liver kinase B1 is a central regulator of T cell development, activation, and metabolism J. Immunol 2011 187 4187 4198 pmid: 21930968 21930968 PMC3206094 source
Not checked in the free run.
- Premisecitation
Lymphocytes exclusively express the a1 catalytic subunit of AMPK.
“Lymphocytes exclusively express the a1 catalytic subunit of AMPK (87), and TCR stimulation promotes LKB1-dependent AMPK activation in lymphocytes (87, 88).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [87] Tamás P Regulation of the energy sensor AMP-activated protein kinase by antigen receptor and Ca2+ in T lymphocytes J. Exp. Med 2006 203 1665 1670 pmid: 16818670 16818670 PMC2118355 source
Not checked in the free run.
- Premisecitation
AMPK functions as a sensor of the cellular adenylate energy charge.
“As such, AMPK functions as a sensor of the cellular adenylate energy charge (84, 85).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [84] Xiao B Structure of mammalian AMPK and its regulation by ADP Nature 2011 472 230 233 pmid: 21399626 21399626 PMC3078618 source
Not checked in the free run.
- cites [85] Oakhill JS AMPK is a direct adenylate charge-regulated protein kinase Science 2011 332 1433 1435 pmid: 21680840 21680840 source
Not checked in the free run.
- Premisecitation
AMPK antagonizes mRNA translation through negative regulation of mTORC1.
“As mentioned, AMPK antagonizes mRNA translation through negative regulation of mTORC1 (Fig. 4A) (18).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [18] Shackelford DB Shaw RJ The LKB1-AMPK pathway: Metabolism and growth control in tumour suppression Nat. Rev. Cancer 2009 9 563 575 pmid: 19629071 19629071 PMC2756045 source
Not checked in the free run.
- Interpretationreasoning
LKB1 and AMPK act in concert to limit the anabolic growth of T cells by suppressing glycolysis and mTOR-dependent biosynthesis.
“Thus, LKB1 and AMPK act in concert to limit the anabolic growth of T cells by suppressing glycolysis and mTOR-dependent biosynthesis.”
Quote in the paperSubstantial claim - Premisecitation
TCR stimulation promotes LKB1-dependent AMPK activation in lymphocytes.
“Lymphocytes exclusively express the a1 catalytic subunit of AMPK (87), and TCR stimulation promotes LKB1-dependent AMPK activation in lymphocytes (87, 88).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [87] Tamás P Regulation of the energy sensor AMP-activated protein kinase by antigen receptor and Ca2+ in T lymphocytes J. Exp. Med 2006 203 1665 1670 pmid: 16818670 16818670 PMC2118355 source
Not checked in the free run.
- cites [88] MacIver NJ The liver kinase B1 is a central regulator of T cell development, activation, and metabolism J. Immunol 2011 187 4187 4198 pmid: 21930968 21930968 PMC3206094 source
Not checked in the free run.
- Premisecitation
LKB1-AMPK signaling can influence T cell metabolism and function.
“Recent work indicates that LKB1-AMPK signaling can influence T cell metabolism and function.”
Quote in the paperSubstantial claim - Premisecitation
In the cancer setting, 2-HG influences a number of biological processes, including cell differentiation, DNA methylation, and histone methylation.
“In the cancer setting, 2-HG has been shown to influence a number of biological processes, including cell differentiation, DNA methylation, and histone methylation (79–82), leading to its classification as an oncometabolite.”
Quote in the paperNot a substantial claim0 of 4 sources checked- cites [79] Figueroa ME Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation Cancer Cell 2010 18 553 567 pmid: 21130701 21130701 PMC4105845 source
Not checked in the free run.
- cites [80] Lu C IDH mutation impairs histone demethylation and results in a block to cell differentiation Nature 2012 483 474 478 pmid: 22343901 22343901 PMC3478770 source
Not checked in the free run.
- cites [81] Xu W Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases Cancer Cell 2011 19 17 30 pmid: 21251613 21251613 PMC3229304 source
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- cites [82] Turcan S IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype Nature 2012 483 479 483 pmid: 22343889 22343889 PMC3351699 source
Not checked in the free run.
- Premisecitation
α-KG can be converted to citrate through reductive carboxylation under conditions of stress such as hypoxia or mitochondrial dysfunction.
“Although oxidation of glutamine-derived α-KG in the TCA cycle serves as a minor source of lipogenic acetyl-CoA under normal growth conditions, α-KG can be converted to citrate through reductive carboxylation under conditions of stress such as hypoxia or mitochondrial dysfunction (70–72).”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [70] Mullen AR Reductive carboxylation supports growth in tumour cells with defective mitochondria Nature 2012 481 385 388 pmid: 22101431 22101431 PMC3262117 source
Not checked in the free run.
- cites [71] Metallo CM Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia Nature 2012 481 380 384 pmid: 22101433 22101433 PMC3710581 source
Not checked in the free run.
- cites [72] Wise DR Hypoxia promotes isocitrate dehydrogenase-dependent carboxylation of α-ketoglutarate to citrate to support cell growth and viability Proc. Natl. Acad. Sci. U.S.A 2011 108 19611 19616 pmid: 22106302 22106302 PMC3241793 source
Not checked in the free run.
- Premisecitation
Cancer genome sequencing efforts identified somatic mutations in IDH1 in glioblastoma multiforme in 2008.
“Cancer genome sequencing efforts yielded an unexpected discovery in 2008 with the identification of somatic mutations in a metabolic enzyme, the TCA cycle enzyme IDH1, in glioblastoma multiforme (GBM) (77).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [77] Parsons DW An integrated genomic analysis of human glioblastoma multiforme Science 2008 321 1807 1812 pmid: 18772396 18772396 PMC2820389 source
Not checked in the free run.
- Interpretationreasoning
Given certain similarities between metabolic programming in tumor cells and proliferating T cells, metabolites will participate in T cell signaling as well.
“Given certain similarities between metabolic programming in tumor cells and proliferating T cells, it stands to reason that metabolites will participate in T cell signaling as well.”
Quote in the paperSubstantial claim- Rests on an assumption: Metabolic programming in tumor cells and proliferating T cells share certain similarities.
- Premisecitation
Deletion of either LKB1 or AMPKα1 disrupts normal lymphocyte homeostasis, resulting in an accumulation of activated (CD44hi CD62Llo) CD8+ T cells in animals.
“Perhaps not surprisingly, deletion of either LKB1 or AMPKα1 disrupts normal lymphocyte homeostasis, resulting in an accumulation of activated (CD44hi CD62Llo) CD8+ T cells in animals (88).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [88] MacIver NJ The liver kinase B1 is a central regulator of T cell development, activation, and metabolism J. Immunol 2011 187 4187 4198 pmid: 21930968 21930968 PMC3206094 source
Not checked in the free run.
- Premisecitation
Carbon-tracing experiments using proliferating glioblastoma cells have established that both glucose and glutamine contribute to mitochondrial citrate pools and subsequent lipid synthesis.
“Carbon-tracing experiments using proliferating glioblastoma cells have established that both glucose and glutamine contribute to mitochondrial citrate pools and subsequent lipid synthesis (69).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [69] DeBerardinis RJ Beyond aerobic glycolysis: Transformed cells can engage in glutamine metabolism that exceeds the requirement for protein and nucleotide synthesis Proc. Natl. Acad. Sci. U.S.A 2007 104 19345 19350 pmid: 18032601 18032601 PMC2148292 source
Not checked in the free run.
- Premisecitation
GAPDH, by engaging or disengaging the glycolysis pathway and through fluctuations in its expression, regulates the posttranscriptional production of IFN-γ by T cells.
“Lending weight to the REM network hypothesis is a recent study showing that the enzyme glyceraldehyde-3-phosphate dehydrogenase (GAPDH), by engaging or disengaging the glycolysis pathway and through fluctuations in its expression, regulates the posttranscriptional production of IFN-γ by T cells (27).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [27] Chang CH Posttranscriptional control of T cell effector function by aerobic glycolysis Cell 2013 153 1239 1251 pmid: 23746840 23746840 PMC3804311 source
Not checked in the free run.
- Interpretationcitation
When T cells switch between ATP-generating programs, GAPDH switches from its function as a metabolic enzyme (glycolysis) to its function as an RNA binding protein controlling expression of immunomodulatory factors.
“When T cells switch between these ATP-generating programs, as can occur with changes in nutrient availability, or costimulatory or growth factor signals, GAPDH switches from its function as a metabolic enzyme (glycolysis) to its function as an RNA binding protein controlling expression of immunomodulatory factors.”
Quote in the paperSubstantial claim - Interpretationreasoning
Differential TCA cycle flux or buildup of intermediates such as succinate or fumarate may influence the activity of α-KG-dependent enzymes that regulate T cell epigenetics.
“Differential TCA cycle flux or buildup of intermediates such as succinate or fumarate may influence the activity of α-KG-dependent enzymes that regulate T cell epigenetics.”
Quote in the paperSubstantial claim - Interpretationreasoning
Cellular adenylate levels and AMPK may help regulate lymphocyte pools in the whole organism.
“These results suggest that cellular adenylate levels and AMPK may help regulate lymphocyte pools in the whole organism.”
Quote in the paperSubstantial claim - Premisecitation
Changes in metabolism can be linked to changes in gene expression through posttranscriptional regulatory networks involving RNA, metabolites, and metabolic enzymes 'moonlighting' as RNA binding proteins and regulating specific target mRNAs.
“A transformative conceptual change in the way we consider metabolism within cells is that changes in metabolism can be linked to changes in gene expression through posttranscriptional regulatory networks involving RNA, metabolites, and metabolic enzymes “moonlighting” as RNA binding proteins and regulating specific target mRNAs (104) (Fig. 5).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [104] Hentze MW Preiss T The REM phase of gene regulation Trends Biochem. Sci 2010 35 423 426 pmid: 20554447 20554447 source
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- Premisecitation
Fumarate can be used to chemically modify cysteine residues of proteins, resulting in the formation of S-(2-succinyl)cysteine or succinylation of these residues.
“For example, fumarate can be used to chemically modify cysteine residues of proteins, resulting in the formation of S-(2-succinyl)cysteine or succinylation of these residues (93).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [93] Alderson NL S-(2-Succinyl)cysteine: A novel chemical modification of tissue proteins by a Krebs cycle intermediate Arch. Biochem. Biophys 2006 450 1 8 pmid: 16624247 16624247 source
Not checked in the free run.
- Interpretationreasoning
NAD+ controls both enzyme activity and RNA binding in a mutually exclusive fashion.
“Thus, NAD+ controls both enzyme activity and RNA binding in a mutually exclusive fashion.”
Quote in the paperSubstantial claim - Premisecitation
The AMPK agonist metformin, which promotes FAO in activated T cells, enhances the production of CD8+ memory T cells in vivo.
“As evidence for this, the AMPK agonist metformin, which promotes FAO in activated T cells, enhances the production of CD8+ memory T cells in vivo (17).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [17] Pearce EL Enhancing CD8 T-cell memory by modulating fatty acid metabolism Nature 2009 460 103 107 pmid: 19494812 19494812 PMC2803086 source
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- Premisecitation
Succinate plays a central role in production of the cytokine IL-1β by lipopolysaccharide (LPS)-stimulated macrophages.
“It was recently shown that succinate plays a central role in production of the cytokine IL-1 β by lipopolysaccharide (LPS)–stimulated macrophages (102).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [102] Tannahill GM Succinate is an inflammatory signal that induces IL-1β through HIF-1α Nature 2013 496 238 242 pmid: 23535595 23535595 PMC4031686 source
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- Premisecitation
α-KG is essential for the activity of a class of enzymes known as α-KG-dependent dioxygenases.
“α-KG is essential for the activity of a class of enzymes known as α-KG–dependent dioxygenases (Fig. 4B).”
Quote in the paperSubstantial claim - Premisecitation
Differentiation of T cells to specific TH lineages is driven by specific transcription factors but reinforced by epigenetic modifications on histone tails (H3K4 and H3K27 trimethylation) and DNA methylation of CpG dinucleotides.
“Differentiation of T cells to specific TH lineages is driven by specific transcription factors but reinforced by epigenetic modifications on histone tails (H3K4 and H3K27 trimethylation) and DNA methylation of CpG dinucleotides (103).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [103] Kanno Y Vahedi G Hirahara K Singleton K O’Shea JJ Transcriptional and epigenetic control of T helper cell specification: Molecular mechanisms underlying commitment and plasticity Annu. Rev. Immunol 2012 30 707 731 pmid: 22224760 22224760 PMC3314163 source
Not checked in the free run.
- Premisecitation
AMPK-deficient T cells are defective in their ability to generate CD8+ memory T cells during infection.
“Furthermore, it was recently shown that AMPK-deficient T cells are defective in their ability to generate CD8+ memory T cells during infection (92).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [92] Rolf J AMPKa1: A glucose sensor that controls CD8 T-cell memory Eur. J. Immunol 2013 43 889 896 pmid: 23310952 23310952 PMC3734624 source
Not checked in the free run.
- Interpretationcitation
AMPK may regulate a metabolic checkpoint in T cells, acting as a brake on lymphocyte expansion when energy conditions are poor.
“Similar to tumor cells (91), AMPK may regulate a metabolic checkpoint in T cells, acting as a brake on lymphocyte expansion when energy conditions are poor.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [91] Jones RG AMP-activated protein kinase induces a p53-dependent metabolic checkpoint Mol. Cell 2005 18 283 293 pmid: 15866171 15866171 source
Not checked in the free run.
- Premisecitation
GAPDH is a multifunctional enzyme that can bind a range of RNAs, including AU-rich regions in the 3' untranslated region (UTR) of cytokine mRNAs, including IFN-γ and IL-2.
“GAPDH is a multifunctional enzyme that can bind a range of RNAs, including AU-rich regions in the 3’ untranslated region (UTR) of cytokine mRNAs, including IFN-γ and IL-2 (111).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [111] Nagy E Rigby WFC Glyceraldehyde-3-phosphate dehydrogenase selectively binds AU-rich RNA in the NAD (+)-binding region (Rossmann fold) J. Biol. Chem 1995 270 2755 2763 pmid: 7531693 7531693 source
Not checked in the free run.
- Premisecitation
High levels of succinate and fumarate can inhibit PHD2 activity through product-mediated inhibition of PHD function, leading to HIF-1α protein stabilization under normoxic (20% O2) conditions.
“High levels of succinate and fumarate can inhibit PHD2 activity through product-mediated inhibition of PHD function, leading to HIF-1α protein stabilization under normoxic (20% O2) conditions (100, 101).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [100] Isaacs JS HIF overexpression correlates with biallelic loss of fumarate hydratase in renal cancer: Novel role of fumarate in regulation of HIF stability Cancer Cell 2005 8 143 153 pmid: 16098467 16098467 source
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- cites [101] Selak MA Succinate links TCA cycle dysfunction to oncogenesis by inhibiting HIF-alpha prolyl hydroxylase Cancer Cell 2005 7 77 85 pmid: 15652751 15652751 source
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- Premisecitation
Many enzymes, including those connected with the TCA cycle, glycolysis, PPP, fatty acid metabolism, and other pathways, have been shown to bind RNA in vitro and in cultured cells.
“Many enzymes, including those connected with the TCA cycle, glycolysis, PPP, fatty acid metabolism, and other pathways, have been shown to bind RNA in vitro and in cultured cells (105, 106).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [105] Castello A Insights into RNA biology from an atlas of mammalian mRNA-binding proteins Cell 2012 149 1393 1406 pmid: 22658674 22658674 source
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- cites [106] Cieśla J Metabolic enzymes that bind RNA: Yet another level of cellular regulatory network? Acta Biochim. Pol 2006 53 11 32 pmid: 16410835 16410835 source
Not checked in the free run.
- Interpretationreasoning
As TEFF cells move from a nutrient-replete environment in the lymph node or spleen to distant sites of infection, they are likely to experience more restrictive metabolic environments.
“As TEFF cells move from a nutrient-replete environment in the lymph node or spleen to distant sites of infection, they are likely to experience more restrictive metabolic environments (Fig. 6).”
Quote in the paperSubstantial claim - Interpretationcitation
AMPK and HIF-1α are likely to have a profound effect on the adaptive immune response.
“In this context, AMPK and HIF-1α, which monitor cellular energy and O2 levels, respectively, are likely to have a profound effect on the adaptive immune response.”
Quote in the paperNot a substantial claim - Premisecitation
Competition between tumor cells and tumor-infiltrating T cells for available glucose can impose nutrient deprivation on TEFF cells that limits their ability to produce effector cytokines.
“Competition between tumor cells and tumor-infiltrating T cells for available glucose can impose nutrient deprivation on TEFF cells that limits their ability to produce effector cytokines (27).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [27] Chang CH Posttranscriptional control of T cell effector function by aerobic glycolysis Cell 2013 153 1239 1251 pmid: 23746840 23746840 PMC3804311 source
Not checked in the free run.
- Premisecitation
Steady-state metabolite levels provide no measurement of metabolite flux, that is, the speed or direction of metabolite flow through a given pathway.
“One caution of measuring steady-state metabolite levels is that these data provide no measurement of metabolite flux, that is, the speed or direction of metabolite flow through a given pathway (115).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [115] DeBerardinis RJ Thompson CB Cellular metabolism and disease: What do metabolic outliers teach us? Cell 2012 148 1132 1144 pmid: 22424225 22424225 PMC3337773 source
Not checked in the free run.
- Premisecitation
Tumor-derived lactate can suppress CTL function directly by blocking lactate export by T cells, thus disrupting their ability to maintain glycolysis.
“Tumor-derived lactate can also suppress CTL function directly by blocking lactate export by T cells, thus disrupting their ability to maintain glycolysis (121).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [121] Fischer K Inhibitory effect of tumor cell-derived lactic acid on human T cells Blood 2007 109 3812 3819 pmid: 17255361 17255361 source
Not checked in the free run.
- Interpretationreasoning
From a metabolic perspective, cell culture models and in vivo immune responses are worlds apart.
“From a metabolic perspective, one can conclude that the two systems are worlds apart.”
Quote in the paperSubstantial claim - Interpretationreasoning
Metabolic insufficiency may be a fundamental mechanism by which environmental context regulates T cell function, potentially influencing T cell tolerance and anergy.
“Metabolic insufficiency may be a fundamental mechanism by which environmental context regulates T cell function, potentially influencing T cell tolerance and anergy.”
Quote in the paperSubstantial claim - Premisecitation
Redox changes may also affect posttranslational modifications of GAPDH, altering its binding to mRNA, metabolites, as well as its localization within the cell.
“Redox changes may also affect posttranslational modifications of GAPDH, altering its binding to mRNA, metabolites, as well as its localization within the cell (113, 114).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [113] Colell A GAPDH and autophagy preserve survival after apoptotic cytochrome c release in the absence of caspase activation Cell 2007 129 983 997 pmid: 17540177 17540177 source
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- cites [114] Tristan C Shahani N Sedlak TW Sawa A The diverse functions of GAPDH: Views from different subcellular compartments Cell. Signal 2011 23 317 323 pmid: 20727968 20727968 PMC3084531 source
Not checked in the free run.
- Interpretationcitation
Tumors may restrict antitumor immunity by influencing T cell metabolism.
“Tumors may similarly restrict antitumor immunity by influencing T cell metabolism.”
Quote in the paperSubstantial claim - Premisecitation
Metabolic interference mechanisms, such as IDO-1-dependent degradation of tryptophan by antigen presenting cells, may represent key regulatory mechanisms at sites of infection or inflammation.
“Metabolic interference mechanisms, such as indoleamine 2,3-dioxygenase (IDO)–1–dependent degradation of tryptophan by antigen presenting cells (APCs), may represent key regulatory mechanisms at sites of infection or inflammation (120).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [120] Mellor AL Munn DH IDO expression by dendritic cells: Tolerance and tryptophan catabolism Nat. Rev. Immunol 2004 4 762 774 pmid: 15459668 15459668 source
Not checked in the free run.
- Interpretationcitation
HIF-1α is required for promoting TH17 function in vivo.
“consistent with a requirement for HIF-1α in promoting TH17 function in vivo.”
Quote in the paperNot a substantial claim
- May combine two claims. 44
- Classified as probably not a substantial claim. 12
May combine two claims.
FindingcitationIncreased mitochondrial mass and spare respiratory capacity of memory T cells allows rapid mitochondrial ATP production upon TCR engagement, conferring a bioenergetic advantage upon secondary antigen exposure.
“We have recently shown that increased mitochondrial mass and SRC of TM cells allows for rapid mitochondrial ATP production upon TCR engagement, conferring a bioenergetic advantage to TM cells upon secondary exposure to antigen (16).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [16] van der Windt GJ CD8 memory T cells have a bioenergetic advantage that underlies their rapid recall ability Proc. Natl. Acad. Sci. U.S.A 2013 110 14336 14341 pmid: 23940348 23940348 PMC3761631 source
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Probably not a substantial claim: may not pass S4 (based).
Interpretationnone givenMetabolic reprogramming and lymphocyte activation are intricately linked.
“An emerging theme in immunology is that metabolic reprogramming and lymphocyte activation are intricately linked.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAerobic glycolysis (the Warburg effect) is a common trait of actively proliferating cells.
“This process, also known as the Warburg effect from earlier work in cancer biology, is a common trait of actively proliferating cells (5).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [5] Vander Heiden MG Cantley LC Thompson CB Understanding the Warburg effect: The metabolic requirements of cell proliferation Science 2009 324 1029 1033 pmid: 19460998 19460998 PMC2849637 source
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PremisecitationOXPHOS is still engaged in effector T cells, but lactate production from aerobic glycolysis is the dominant pathway of glucose metabolism in effector T cells.
“It is important to note that OXPHOS is still engaged in TEFF cells (9); however, the production of lactate from pyruvate by aerobic glycolysis is the dominant pathway of glucose metabolism in TEFF cells.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [9] Wang R The transcription factor Myc controls metabolic reprogramming upon T lymphocyte activation Immunity 2011 35 871 882 pmid: 22195744 22195744 PMC3248798 source
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May combine two claims.
PremisecitationT cells deficient for Uqcrfs1 display impaired TCR-dependent ROS production and defects in antigen-specific proliferation.
“T cells deficient for ubiquinol-cytochrome c reductase (Uqcrfs1), a component of complex III of the ETC, display impaired TCR-dependent ROS production and defects in antigen-specific proliferation (31).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [31] Sena LA Mitochondria are required for antigen-specific T cell activation through reactive oxygen species signaling Immunity 2013 38 225 236 pmid: 23415911 23415911 PMC3582741 source
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PremisecitationRestoring Ca2+ signals in Bax/Bak-null T cells restores mitochondrial ROS production and T cell proliferation.
“Restoring Ca2+ signals in Bax/Bak-null T cells restores mitochondrial ROS production and T cell proliferation (33).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [33] Jones RG The proapoptotic factors Bax and Bak regulate T Cell proliferation through control of endoplasmic reticulum Ca(2+) homeostasis Immunity 2007 27 268 280 pmid: 17692540 17692540 PMC2714273 source
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Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationAMPK activation and mTOR inhibition are potent activators of autophagy.
“AMPK activation and mTOR inhibition are also both potent activators of autophagy, a catabolic process induced during starvation that promotes the degradation and recycling of cellular components [reviewed in detail in (24)].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [24] Kundu M Thompson CB Autophagy: Basic principles and relevance to disease Annu. Rev. Pathol 2008 3 427 455 pmid: 18039129 18039129 source
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May combine two claims.
PremisecitationOligomycin blocks expression of early activation markers after TCR ligation and blunts subsequent T cell proliferation.
“Oligomycin, a specific inhibitor of mitochondrial ATP synthase, can block the expression of early activation markers after TCR ligation and blunts subsequent T cell proliferation (27), suggesting that the naïve-to-effector transition requires either de novo production of ATP by mitochondria or specific signals generated during mitochondrial ATP production.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [27] Chang CH Posttranscriptional control of T cell effector function by aerobic glycolysis Cell 2013 153 1239 1251 pmid: 23746840 23746840 PMC3804311 source
Not checked in the free run.
May combine two claims.
InterpretationcitationThe naïve-to-effector transition requires either de novo production of ATP by mitochondria or specific signals generated during mitochondrial ATP production.
“Oligomycin, a specific inhibitor of mitochondrial ATP synthase, can block the expression of early activation markers after TCR ligation and blunts subsequent T cell proliferation (27), suggesting that the naïve-to-effector transition requires either de novo production of ATP by mitochondria or specific signals generated during mitochondrial ATP production.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationT cells lacking Bax and Bak exhibit reduced Ca2+-dependent mitochondrial ROS production and T cell proliferation after TCR stimulation.
“T cells lacking the apoptosis regulators Bax and Bak, which display defects in intracellular Ca2+ homeostasis, exhibit reduced Ca2+-dependent mitochondrial ROS production and T cell proliferation after TCR stimulation (33).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [33] Jones RG The proapoptotic factors Bax and Bak regulate T Cell proliferation through control of endoplasmic reticulum Ca(2+) homeostasis Immunity 2007 27 268 280 pmid: 17692540 17692540 PMC2714273 source
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May combine two claims.
PremisecitationProinflammatory CD4+ TH cells (TH1, TH2, TH17) display a strong bias toward glycolysis over mitochondrial metabolism, whereas induced CD4+ Treg cells display a mixed metabolism involving glycolysis, lipid oxidation, and OXPHOS.
“This was first demonstrated by Michalek et al. (34), who determined that proinflammatory CD4+ T helper (TH) cells (TH1, TH2, and TH17 lineages) displayed a strong bias toward glycolysis over mitochondrial metabolism, whereas induced CD4+ T regulatory (Treg) lineage cells displayed a mixed metabolism involving glycolysis, lipid oxidation, and OXPHOS.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [34] Michalek RD Cutting edge: Distinct glycolytic and lipid oxidative metabolic programs are essential for effector and regulatory CD4+ T cell subsets J. Immunol 2011 186 3299 3303 pmid: 21317389 21317389 PMC3198034 source
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May combine two claims.
PremisecitationTH17 cell development is promoted by HIF-1α, which regulates glycolytic gene expression in TH17 cells.
“TH17 cell development is promoted by hypoxia inducible factor–1α (HIF-1α) (35, 36), an oxygen-sensitive transcription factor that regulates glycolytic gene expression in TH17 cells.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [35] Shi LZ HIF1a–dependent glycolytic pathway orchestrates a metabolic checkpoint for the differentiation of TH17 and Treg cells J. Exp. Med 2011 208 1367 1376 pmid: 21708926 21708926 PMC3135370 source
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- cites [36] Dang EV Control of T(H)17/T(reg) balance by hypoxia-inducible factor 1 Cell 2011 146 772 784 pmid: 21871655 21871655 PMC3387678 source
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May combine two claims.
InterpretationcitationACC2, CPT1A, acetyl-CoA, and malonyl-CoA are important players in memory T cell formation.
“Some important players to consider in this regard include acetyl-CoA carboxylase (ACC2) (21), the mitochondrial lipid transporter CPT1A (13, 22), and metabolites such as acetyl-CoA and malonyl-CoA (23).”
Quote in the paperNot a substantial claim0 of 4 sources checked- cites [21] Abu-Elheiga L Matzuk MM Abo-Hashema KA Wakil SJ Continuous fatty acid oxidation and reduced fat storage in mice lacking acetyl-CoA carboxylase 2 Science 2001 291 2613 2616 pmid: 11283375 11283375 source
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- cites [13] van der Windt GJ Mitochondrial respiratory capacity is a critical regulator of CD8+ T cell memory development Immunity 2012 36 68 78 pmid: 22206904 22206904 PMC3269311 source
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- cites [22] DeBerardinis RJ Lum JJ Thompson CB Phosphatidylinositol 3-kinase-dependent modulation of carnitine palmitoyltransferase 1A expression regulates lipid metabolism during hematopoietic cell growth J. Biol. Chem 2006 281 37372 37380 pmid: 17030509 17030509 source
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- cites [23] McGarry JD Mannaerts GP Foster DW A possible role for malonyl-CoA in the regulation of hepatic fatty acid oxidation and ketogenesis J. Clin. Invest 1977 60 265 270 pmid: 874089 874089 PMC372365 source
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May combine two claims.
PremisecitationExtracellular salt (NaCl) can influence TH17 homeostasis, and short-chain fatty acids can influence Treg homeostasis.
“Added to this are recent results indicating that extracellular salt (NaCl) (37, 38) and short-chain fatty acids (39) can influence TH17 and Treg homeostasis, respectively.”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [37] Wu C Induction of pathogenic TH17 cells by inducible salt-sensing kinase SGK1 Nature 2013 496 513 517 pmid: 23467085 23467085 PMC3637879 source
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- cites [38] Kleinewietfeld M Sodium chloride drives autoimmune disease by the induction of pathogenic TH17 cells Nature 2013 496 518 522 pmid: 23467095 23467095 PMC3746493 source
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- cites [39] Smith PM The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis Science 2013 341 569 573 pmid: 23828891 23828891 PMC3807819 source
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Classified as probably not a substantial claim.
InterpretationcitationGlucose-dependent metabolic flux may help drive or reinforce T cell differentiation programs.
“Glucose availability and acetyl-CoA production can also influence epigenetics by regulating the cytosolic acetyl-CoA pools available for histone acetylation reactions (51), raising the prospect that glucose-dependent metabolic flux may help drive or reinforce T cell differentiation programs.”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningInefficient cycling of this pathway would lead to cumulative depletion of mitochondrial OAA, collapse of TCA cycle, and disruption of mitochondrial function.
“Inefficient cycling of this pathway would lead to cumulative depletion of mitochondrial OAA, leading to collapse of the TCA cycle and disruption of mitochondrial function.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationIn this model, mitochondrial citrate is formed from oxaloacetate and acetyl-CoA, exported to cytosol, and converted back to acetyl-CoA by ATP citrate lyase (ACL).
“In this model, mitochondrial citrate is formed from condensation of oxaloacetate and acetyl-CoA, after which citrate is exported from the mitochondrion to the cytosol and converted back to acetyl-CoA by ATP citrate lyase (ACL) (47).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [47] Hatzivassiliou G ATP citrate lyase inhibition can suppress tumor cell growth Cancer Cell 2005 8 311 321 pmid: 16226706 16226706 source
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Probably not a substantial claim: may not pass S3 (load-bearing).
Premisenone givenResearch in cancer metabolism has increased understanding of metabolic requirements of proliferating cells and metabolic alterations that promote tumor growth.
“Research in cancer metabolism over the past 10 years has increased our understanding of the metabolic requirements of proliferating cells, as well as the metabolic alterations that promote tumor growth.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationBlocking glycolysis during TH17 cell differentiation reduces TH17 development and favors Treg formation.
“Blocking glycolysis during TH17 cell differentiation reduced the development of TH17 cells and favored the formation of Tregs (35).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [35] Shi LZ HIF1a–dependent glycolytic pathway orchestrates a metabolic checkpoint for the differentiation of TH17 and Treg cells J. Exp. Med 2011 208 1367 1376 pmid: 21708926 21708926 PMC3135370 source
Not checked in the free run.
May combine two claims.
Interpretationnone givenMetabolism in T cells is likely regulated at several levels: TCR-mediated changes in metabolic gene expression, signal transduction downstream of cell surface receptors, and feedback inhibition/allosteric regulation.
“Overall, metabolism in T cells is likely regulated at several levels: (i) TCR-mediated changes in the expression of metabolic genes facilitate the reprogramming required to match metabolic pathways to biological need; (ii) signal transduction downstream of cell surface receptors (i.e., costimulatory molecules and cytokine receptors) serve to fine-tune flux through these metabolic pathways; and (ii”
Quote in the paperNot a substantial claimMay combine two claims.
PremisereasoningRapid glucose processing promoted by the Warburg effect allows proliferating T cells to generate ATP quickly, and glycolysis generates metabolic intermediates important for cell growth and proliferation.
“Rapid glucose processing promoted by the Warburg effect allows proliferating T cells to generate ATP quickly; glycolysis also generates metabolic intermediates important for cell growth and proliferation (Fig. 2).”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationAcetyl-CoA has a central role in membrane biogenesis by providing two-carbon units for fatty acid and isoprenoid biosynthesis, and in protein prenylation and N-glycosylation.
“Acetyl-CoA has a central role in membrane biogenesis because it provides two-carbon units for fatty acid and isoprenoid biosynthesis, as well as in other diverse processes such as protein prenylation and N-glycosylation (45).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [45] Wellen KE Thompson CB A two-way street: Reciprocal regulation of metabolism and signalling Nat. Rev. Mol. Cell Biol 2012 13 270 276 pmid: 22395772 22395772 source
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PremisecitationTCR/CD28 stimulation of T cells, surface immunoglobulin stimulation on B cells, and TLR stimulation of macrophages and DCs all promote changes in aerobic glycolysis characteristic of the Warburg effect.
“TCR/CD28 stimulation of T cells (6), the stimulation of surface immunoglobulin on B cells (41), and TLR stimulation of macrophages and dendritic cells (DCs) (42, 43) all promote changes in aerobic glycolysis characteristic of the Warburg effect.”
Quote in the paperSubstantial claim0 of 4 sources checked- cites [6] Frauwirth KA The CD28 signaling pathway regulates glucose metabolism Immunity 2002 16 769 777 pmid: 12121659 12121659 source
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- cites [41] Doughty CA Antigen receptor-mediated changes in glucose metabolism in B lymphocytes: Role of phosphatidylinositol 3-kinase signaling in the glycolytic control of growth Blood 2006 107 4458 4465 pmid: 16449529 16449529 PMC1895797 source
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- cites [42] Krawczyk CM Toll-like receptor-induced changes in glycolytic metabolism regulate dendritic cell activation Blood 2010 115 4742 4749 pmid: 20351312 20351312 PMC2890190 source
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- cites [43] Haschemi A The sedoheptulose kinase CARKL directs macrophage polarization through control of glucose metabolism Cell Metab 2012 15 813 826 pmid: 22682222 22682222 PMC3370649 source
Not checked in the free run.
Probably not a substantial claim: may not pass S1 (asserted).
InterpretationreasoningThe metabolic microenvironment can influence T cell polarization.
“This raises the intriguing possibility that the metabolic microenvironment (i.e., nutrient and oxygen availability) can influence T cell polarization (to be discussed later).”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationPKM2 exists as inactive dimer or active tetramer, and oscillation between these states influences ability of cells to maintain anabolic metabolism.
“PKM2 exists as either an inactive dimer or an active tetramer, and oscillation between these two states influences the ability of cells to maintain anabolic metabolism (56).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [56] Anastasiou D Pyruvate kinase M2 activators promote tetramer formation and suppress tumorigenesis Nat. Chem. Biol 2012 8 839 847 pmid: 22922757 22922757 PMC3711671 source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationPKM2 splice variant is expressed in embryonic tissues, proliferating cells, and tumor cells.
“The muscle version of PK exists as one of two isoforms, M1 or M2, generated from differential splicing of the PKM primary mRNA transcript, with the PKM2 splice variant expressed in embryonic tissues, proliferating cells, and tumor cells (54).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [54] Mazurek S Pyruvate kinase type M2: A key regulator of the metabolic budget system in tumor cells Int. J. Biochem. Cell Biol 2011 43 969 980 pmid: 20156581 20156581 source
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May combine two claims.
PremisecitationActivating PKM2 with small-molecule agonists increases PEP-to-pyruvate conversion, reduces flux of glycolytic intermediates toward anabolic pathways, and slows tumor cell growth.
“Activating PKM2 by using small-molecule agonists increases PEP-to-pyruvate conversion, reducing the flux of glycolytic intermediates toward anabolic pathways and slowing tumor cell growth (56, 60).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [56] Anastasiou D Pyruvate kinase M2 activators promote tetramer formation and suppress tumorigenesis Nat. Chem. Biol 2012 8 839 847 pmid: 22922757 22922757 PMC3711671 source
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- cites [60] Kung C Small molecule activation of PKM2 in cancer cells induces serine auxotrophy Chem. Biol 2012 19 1187 1198 pmid: 22999886 22999886 PMC3775715 source
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May combine two claims.
InterpretationreasoningPKM2 possesses both protein and pyruvate kinase activities, with protein kinase activity using PEP as phosphate donor rather than ATP.
“The phosphorylation of STAT3 by PKM2 demonstrates that PKM2 possesses both protein and pyruvate kinase activities, the former using PEP as a phosphate donor rather than ATP.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
InterpretationreasoningThe SBP may promote an alternate pathway of α-KG production for mitochondrial metabolism or promote the activity of α-KG-dependent enzymes.
“Thus, the SBP may promote an alternate pathway of α-KG production for mitochondrial metabolism or promote the activity of α-KG– dependent enzymes (to be discussed later).”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationIncreased PHGDH expression can promote enhanced serine biosynthesis and the proliferation of cancer cells.
“Amplification of PHGDH has been observed in breast cancer and melanoma (65), and increased PHGDH expression can promote both enhanced serine biosynthesis and the proliferation of cancer cells (65, 66).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [65] Locasale JW Phosphoglycerate dehydrogenase diverts glycolytic flux and contributes to oncogenesis Nat. Genet 2011 43 869 874 pmid: 21804546 21804546 PMC3677549 source
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- cites [66] Possemato R Functional genomics reveal that the serine synthesis pathway is essential in breast cancer Nature 2011 476 346 350 pmid: 21760589 21760589 PMC3353325 source
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Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
InterpretationreasoningProtein kinase activity of PKM2 is predicted to be sensitive to metabolic flux, favored under high-glycolysis PEP conditions and antagonized by low-energy high-ADP concentrations.
“The protein kinase activity of PKM2 (and any subsequent effects on STAT3 activity) would be predicted to be sensitive to metabolic flux, favored under high-glycolysis PEP conditions and antagonized by low-energy high-ADP concentrations.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationNaïve T cells express both M1 and M2 PK isoforms at rest; mitogen-dependent activation promotes rapid accumulation of M2, which becomes dominant in effector T cells.
“Naïve T cells express both M1 and M2 isoforms at rest; mitogen-dependent activation promotes the rapid accumulation of the M2 isoform, which becomes the dominant isoform expressed in TEFF cells (55).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [55] Marjanovic S Eriksson I Nelson BD Expression of a new set of glycolytic isozymes in activated human peripheral lymphocytes Biochim. Biophys. Acta 1990 1087 1 6 pmid: 2169315 2169315 source
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InterpretationreasoningAmino acids such as glutamine and leucine appear to play additional roles in T cell function beyond protein biosynthesis and may directly influence T cell activation by regulating metabolic reprogramming.
“Thus, amino acids such as glutamine and leucine appear to play additional roles in T cell function beyond protein biosynthesis and may directly influence T cell activation by regulating metabolic reprogramming.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationTumor cells engineered to exclusively express M2 isoform display increased lactate production characteristic of Warburg effect and gain growth advantage in vivo over M1-expressing tumors.
“Tumor cells engineered to exclusively express the M2 isoform display increased lactate production characteristic of the Warburg effect and gain a growth advantage in vivo over M1-expressing tumors (57).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [57] Christofk HR The M2 splice isoform of pyruvate kinase is important for cancer metabolism and tumour growth Nature 2008 452 230 233 pmid: 18337823 18337823 source
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InterpretationreasoningTumor cells display a high degree of metabolic plasticity and can adapt their metabolism to support proliferation and viability under fluctuating environmental conditions.
“One implication of this work is that tumor cells display a high degree of metabolic plasticity and can adapt their metabolism to support proliferation and viability under fluctuating environmental conditions.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationLoss of LKB1-AMPK signaling promotes increased mTORC1 activity in both naïve and TEFF cells, which in turn facilitates production of the TH1 cytokine interferon-γ (IFN-γ) by TEFF cells.
“Loss of LKB1-AMPK signaling promotes increased mTORC1 activity in both naïve and TEFF cells (88, 90), which in turn facilitates production of the TH1 cytokine interferon-γ (IFN-γ) by TEFF cells (88).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [88] MacIver NJ The liver kinase B1 is a central regulator of T cell development, activation, and metabolism J. Immunol 2011 187 4187 4198 pmid: 21930968 21930968 PMC3206094 source
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- cites [90] Tamás P LKB1 is essential for the proliferation of T-cell progenitors and mature peripheral T cells Eur. J. Immunol 2010 40 242 253 pmid: 19830737 19830737 PMC2988414 source
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Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationIn mammalian cells, fluctuations in cellular energy are monitored by the heterotrimeric AMPK complex.
“In mammalian cells, fluctuations in cellular energy are monitored by the heterotrimeric AMPK complex [reviewed in (83)].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [83] Hardie DG Ross FA Hawley SA AMPK: A nutrient and energy sensor that maintains energy homeostasis Nat. Rev. Mol. Cell Biol 2012 13 251 262 pmid: 22436748 22436748 PMC5726489 source
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Probably not a substantial claim: may not pass S3 (load-bearing).
Premisenone givenTogether LKB1 and AMPK function as part of an evolutionarily conserved energy-sensing pathway that maintains cellular energy balance by promoting catabolic pathways of ATP production and limiting processes that consume ATP.
“Together LKB1 and AMPK function as part of an evolutionarily conserved energy-sensing pathway that maintains cellular energy balance by promoting catabolic pathways of ATP production and limiting processes that consume ATP.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationMutant IDH2 [Arg140→Gln140 (R140Q)] promotes α-KG depletion/2-HG production, promotes DNA hypermethylation in hematopoietic cells, and can inhibit myeloid differentiation when overexpressed in bone marrow stem cells.
“Mutant IDH2 [Arg140→Gln140 (R140Q)], which promotes α-KG depletion/2-HG production, promotes DNA hypermethylation in hematopoietic cells and can inhibit myeloid differentiation when overexpressed in bone marrow stem cells (79).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [79] Figueroa ME Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation Cancer Cell 2010 18 553 567 pmid: 21130701 21130701 PMC4105845 source
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PremisecitationPHDs use O2 to hydroxylate HIF-1α on two conserved proline residues, facilitating their recognition by the E3 ubiquitin ligase VHL and promoting HIF-1α degradation by the proteosome.
“PHDs use O2 to hydroxylate HIF-1α on two conserved proline residues, facilitating their recognition by the E3 ubiquitin ligase VHL and promoting HIF-1α degradation by the proteosome.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningAlthough OXPHOS can support T cell survival and proliferation, only aerobic glycolysis can facilitate full effector status.
“Thus although OXPHOS can support T cell survival and proliferation, only aerobic glycolysis can facilitate full effector status.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationGAPDH requires NAD+ for its enzymatic function, but NAD+ also interferes with mRNA binding, at least in vitro.
“For example, GAPDH requires NAD+ for its enzymatic function, but NAD+ also interferes with mRNA binding, at least in vitro (112).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [112] Nagy E Identification of the NAD(+)-binding fold of glyceraldehyde-3-phosphate dehydrogenase as a novel RNA-binding domain. Biochem Biophys. Res. Commun 2000 275 253 260 pmid: 10964654 10964654 source
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PremisecitationCancer cells harboring mutations in fumarate hydratase (FH) accumulate intracellular fumarate and display increased amounts of succinylated proteins.
“Cancer cells harboring mutations in fumarate hydratase (FH), the TCA cycle enzyme that converts fumarate to malate, accumulate intracellular fumarate and display increased amounts of succinylated proteins (94).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [94] Bardella C Aberrant succination of proteins in fumarate hydratase-deficient mice and HLRCC patients is a robust biomarker of mutation status J. Pathol 2011 225 4 11 pmid: 21630274 21630274 source
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Premisecitation2-HG acts as a competitive inhibitor of α-KG, and its production by mutant IDH1 consumes α-KG, leading to reduced TET2 and JmjC activity in tumor cells.
“For example, 2-HG acts as a competitive inhibitor of α-KG, and its production by mutant IDH1 consumes α-KG (81, 99), leading to reduced TET2 and JmjC activity in tumor cells (79, 80).”
Quote in the paperNot a substantial claim0 of 4 sources checked- cites [81] Xu W Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases Cancer Cell 2011 19 17 30 pmid: 21251613 21251613 PMC3229304 source
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- cites [99] Ward PS The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting alpha-ketoglutarate to 2-hydroxyglutarate Cancer Cell 2010 17 225 234 pmid: 20171147 20171147 PMC2849316 source
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- cites [79] Figueroa ME Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation Cancer Cell 2010 18 553 567 pmid: 21130701 21130701 PMC4105845 source
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- cites [80] Lu C IDH mutation impairs histone demethylation and results in a block to cell differentiation Nature 2012 483 474 478 pmid: 22343901 22343901 PMC3478770 source
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PremisecitationWhen O2 availability is low, HIF-1α protein is stabilized because of reduced PHD activity, resulting in increased HIF-1α-dependent transcription.
“When O2 availability is low, HIF-1α protein is stabilized because of reduced PHD activity, resulting in increased HIF-1α-dependent transcription (97).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [97] Semenza GL Hypoxia-inducible factors in physiology and medicine Cell 2012 148 399 408 pmid: 22304911 22304911 PMC3437543 source
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PremisecitationActivated T cells cultured in standard medium experience 25 mM glucose (five times standard blood glucose of 5 mM), 4 mM glutamine (eight times the standard concentration of 0.5 mM in blood), and 20% O2 [two to four times the oxygen tension in blood, which varies depending on tissue type].
“Activated T cells cultured in standard medium (Iscove’s modified Dulbecco medium plus 10% serum) experience 25 mM glucose (five times standard blood glucose of 5 mM), 4 mM glutamine (eight times the standard concentration of 0.5 mM in blood), and 20% O2 [two to four times the oxygen tension in blood, which varies depending on tissue type (73)].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [73] McNamee EN Korns Johnson D Homann D Clambey ET Hypoxia and hypoxia-inducible factors as regulators of T cell development, differentiation, and function Immunol. Res 2013 55 58 70 pmid: 22961658 22961658 PMC3919451 source
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PremisecitationTEFF cells in the tumor microenvironment compete with tumor cells for available glucose, and this competition model of nutrient restriction limits the ability of TEFF cells to produce effector cytokines such as IFN-γ.
“There is evidence that TEFF cells in the tumor microenvironment compete with tumor cells for available glucose, and this competition model of nutrient restriction limits the ability of TEFF cells to produce effector cytokines such as IFN-γ (27).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [27] Chang CH Posttranscriptional control of T cell effector function by aerobic glycolysis Cell 2013 153 1239 1251 pmid: 23746840 23746840 PMC3804311 source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based). May combine two claims.
Premisenone givenGas chromatography coupled to MS (GC-MS) is effective at quantifying organic acids such as TCA cycle intermediates but not most glycolytic intermediates.
“For example, gas chromatography coupled to MS (GC-MS) is effective at quantifying organic acids such as TCA cycle intermediates but not most glycolytic intermediates.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningMetabolic and environmental influences on T cell function in vivo may elicit very different responses and may account for experimental variance between T cell responses in a petri dish versus what is observed in animal models.
“Thus, metabolic and environmental influences on T cell function in vivo may elicit very different responses and may account for experimental variance between T cell responses in a petri dish versus what is observed in animal models.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationSome tissue sites, such as the thymus, bone marrow, and the gastrointestinal epithelium, are naturally hypoxic, whereas inflammation can promote local hypoxic regions in tissues.
“Some tissue sites, such as the thymus, bone marrow, and the gastrointestinal epithelium, are naturally hypoxic, whereas inflammation can promote local hypoxic regions in tissues (73).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [73] McNamee EN Korns Johnson D Homann D Clambey ET Hypoxia and hypoxia-inducible factors as regulators of T cell development, differentiation, and function Immunol. Res 2013 55 58 70 pmid: 22961658 22961658 PMC3919451 source
Not checked in the free run.
May combine two claims.
PremisecitationLoss of HIF-1α impairs TH17 expansion and induction of experimental autoimmune encephalitis.
“Loss of HIF-1α impairs TH17 expansion and induction of experimental autoimmune encephalitis (35)”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [35] Shi LZ HIF1a–dependent glycolytic pathway orchestrates a metabolic checkpoint for the differentiation of TH17 and Treg cells J. Exp. Med 2011 208 1367 1376 pmid: 21708926 21708926 PMC3135370 source
Not checked in the free run.
May combine two claims.
InterpretationreasoningMost in vitro assays to assess T cell function are performed at nutrient and O2 levels much higher than seen in normal physiology; these conditions model a hyperglycemic and hyperoxic environment never seen in vivo.
“Most in vitro assays to assess T cell function are performed at nutrient and O2 levels much higher than seen in normal physiology; these conditions model a hyperglycemic and hyperoxic environment never seen in vivo.”
Quote in the paperSubstantial claim
The paper relies on this without support.
Upon activation, lymphocytes must meet increased bioenergetic and biosynthetic demands of proliferation and adapt to potentially limiting nutrients and oxygen.
“Lymphocytes face major metabolic challenges upon activation. They must meet the bioenergetic and biosynthetic demands of increased cell proliferation and also adapt to changing environmental conditions, in which nutrients and oxygen may be limiting.”
The paper relies on this without support.
The reasons T cells adopt specific metabolic programs and the impact of these programs on T cell function and immunological outcome are unclear.
“However, why T cells adopt specific metabolic programs and the impact that these programs have on T cell function and, ultimately, immunological outcome remain unclear.”
The paper relies on this without support.
Metabolic programming in tumor cells and proliferating T cells share certain similarities.
“Given certain similarities between metabolic programming in tumor cells and proliferating T cells, it stands to reason that metabolites will participate in T cell signaling as well.”
The paper relies on this without support.
Total abundance of α-KG is low in most cell types.
“Additionally, total abundance of α-KG is low in most cell types.”
The authors state this as an assumption.
Activated T cells frequently transition between nutrient-replete states (lymph nodes) and nutrient-deficient states (sites of infection).
“If activated T cells frequently transition between nutrient-replete states (lymph nodes) and nutrient-deficient states (sites of infection), then management of metabolic resources is an important consideration for lymphocytes in order to ensure maintenance of proliferation and/or effector function.”
The paper relies on this without support.
Interfering with metabolic pathways by using agents such as metformin and rapamycin has already revealed substantial and unexpected effects on T cell–mediated immunity.
“Interfering with metabolic pathways by using agents such as metformin and rapamycin has already revealed substantial and unexpected effects on T cell– mediated immunity.”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Activation of the mTOR signaling pathway is under the control of TCR/CD28 stimulation.
“The activation of mTOR signaling pathway is under the control of TCR/CD28 stimulation (201, 203).”
From Immunosenescence and Its Hallmarks: How to Oppose Aging Strategically? A Review of Potential Options for Therapeutic Intervention (2019) · cites this paper as [201]
mTOR plays an important role in T cell activation and differentiation, especially of naïve CD4+ T cells toward Th1 or Th17 phenotypes.
“mTOR plays an important role in T cell activation and differentiation, especially of naïve CD4+ T cells in their differentiation toward Th1 or Th17 phenotypes (201, 202).”
From Immunosenescence and Its Hallmarks: How to Oppose Aging Strategically? A Review of Potential Options for Therapeutic Intervention (2019) · cites this paper as [201]
The citation lists haven’t been fetched yet
References 122 · Cited by 1,363
- Authors
- Pearce, E. L., Poffenberger, M. C., Chang, C.-H., & Jones, R. G.
- Affiliations
- Washington University in St. Louis (US)
- McGill University (CA)
- Corresponding author
- Pearce, Erika L.
- Jones, Russell G.
- Venue
- Science
- Published
- 2013-10-11
- Volume
- 342
- Issue
- 6155
- Pages
- 1242454-1242454
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC4486656
- OpenAlex
- W1975566288
- Semantic Scholar
- 518aa5b26772d6dcd1b09005f3af65a0ea6116c3
- Cited by
- 1,363
- References
- 122
- Citations by year
- 2026: 92 · 2025: 87 · 2024: 127 · 2023: 120 · 2022: 119 · 2021: 135 · 2020: 121 · 2019: 104 · 2018: 116 · 2017: 102 · 2016: 95 · 2015: 88 · 2014: 55 · 2013: 2
- FWCI
- 6.98
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion, other-oa)
- Funders
- Arthritis Society
- Canadian Institutes of Health Research (MOP-93 799)
- National Cancer Institute (CA158823, R21CA158823, R01CA181125)
- National Institute of Allergy and Infectious Diseases (R01AI091965, AI 091965)
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › T-cell and B-cell Immunology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer, Hypoxia, and Metabolism
- Life Sciences › Immunology and Microbiology › Immunology › Immune cells in cancer
- Keywords
- lymphocyte metabolism, metabolic reprogramming, T cell activation, T cell proliferation, T cell fate, nutrient limitation, oxygen limitation, cancer metabolism, signal transduction, epigenetic programming, immunometabolism
- MeSH terms
- AMP-Activated Protein Kinase Kinases, Thyroid Hormone-Binding Proteins, Animals, Carrier Proteins, Cell Differentiation, Citric Acid Cycle, Gene Expression Regulation, Glycolysis, Humans, Ketoglutaric Acids, Lymphocyte Activation, Membrane Proteins, Mitochondria, Neoplasms, Protein Kinases, T-Lymphocytes, Thyroid Hormones, Protein Serine-Threonine Kinases, Cell Proliferation
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