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UCSF ChimeraX: Structure visualization for researchers, educators, and developers
Open accessAbstract
UCSF ChimeraX is the next‐generation interactive visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX brings (a) significant performance and graphics enhancements; (b) new implementations of Chimera's most highly used tools, many with further improvements; (c) several entirely new analysis features; (d) support for new areas such as virtual reality, light‐sheet microscopy, and medical imaging data; (e) major ease‐of‐use advances, including toolbars with icons to perform actions with a single click, basic “undo” capabilities, and more logical and consistent commands; and (f) an app store for researchers to contribute new tools. ChimeraX includes full user documentation and is free for noncommercial use, with downloads available for Windows, Linux, and macOS from https://www.rbvi.ucsf.edu/chimerax.
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Cites
Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation
Wrapp, D., Wang, N., Corbett, K. S., Goldsmith, J. A., Hsieh, C.-L., Abiona, O., Graham, B. S., & McLellan, J. S. (2020) · Science · doi:10.1126/science.abb2507 · Cited by 8,897
UniProt: a worldwide hub of protein knowledge
The UniProt Consortium (2019) · Nucleic Acids Research · doi:10.1093/nar/gky1049 · Cited by 7,698
Announcing the worldwide Protein Data Bank
Berman, H., Henrick, K., & Nakamura, H. (2003) · Nature Structural & Molecular Biology · doi:10.1038/nsb1203-980 · Cited by 3,093
The chips are down for Moore’s law
Waldrop, M. M. (2016) · Nature · doi:10.1038/530144a · Cited by 2,397
Dense connectomic reconstruction in layer 4 of the somatosensory cortex
Motta, A., Berning, M., Boergens, K. M., Staffler, B., Beining, M., Loomba, S., Hennig, P., Wissler, H., & Helmstaedter, M. (2019) · Science · doi:10.1126/science.aay3134 · Cited by 333
Research works printed but not linked: 29
- 10.1038/nmeth.1427 · DOI
- 10.1073/pnas.1309947110 · DOI
- 10.1038/nprot.2010.126 · DOI
- 10.1016/j.str.2015.05.013 · DOI
- 10.1093/nar/gkp302 · DOI
- 10.1093/nar/gkq394 · DOI
- 10.1093/nar/gkq1021 · DOI · Paper page
- 10.1093/nar/gkq1091 · DOI · Paper page
- 10.1093/nar/gkv1126 · DOI · Paper page
- 10.1093/nar/gkv1290 · DOI
- 10.1093/nar/gku1221 · DOI · Paper page
- 10.1093/bioinformatics/btt138 · DOI
- 10.1093/nar/28.1.235 · DOI · Paper page
- 10.1002/jcc.20084 · DOI · Paper page
- 10.1016/j.str.2018.03.011 · DOI
- 10.1002/cpbi.48 · DOI
- 10.1186/1758-2946-3-32 · DOI
- 10.1002/pro.3235 · DOI · Paper page
- Croll TI, 2018, ISOLDE: A physically realistic environment for model building into low‐resolution electron‐density maps, Acta Cryst, 74, 519
- 10.1016/j.cell.2020.04.031 · DOI · Paper page
- 10.1016/j.jmb.2018.06.040 · DOI
- 10.1093/nar/gkw1118 · DOI
- 10.1093/bioinformatics/17.8.700 · DOI
- 10.1002/bip.22074 · DOI
- NakaneT KotechaA SenteA McMullanG MasiulisS Brown Patricia M. G. E. GrigorasIT MalinauskaiteL MalinauskasT MiehlingJ YuL KariaD PechnikovaEV deJongE KeizerJ BischoffM McCormackJ TiemeijerP HardwickSW ChirgadzeDY MurshudovG AricescuAR ScheresSHW(2020).Single‐particle cryo‐EM at atomic resolution.bioRxiv 110189. http://dx.doi.org/10.1101/2020.05.22.110189. · DOI
- 10.7554/eLife.53740 · DOI
- 10.1016/j.str.2008.03.005 · DOI
- 10.1093/nar/gnj031 · DOI
- 10.1093/nar/gku377 · DOI
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“Data collection and structure refinement statistics are given in Table S2.”
InfluentialStructure-based classification of tauopathies
Shi, Y., Zhang, W., Yang, Y., Murzin, A. G., Falcon, B., Kotecha, A., van Beers, M., Tarutani, A., Kametani, F., Garringer, H. J., et al. (2021) · Nature · doi:10.1038/s41586-021-03911-7 · Cited by 878
Thomson, E. C., Rosen, L. E., Shepherd, J. G., Spreafico, R., da Silva Filipe, A., Wojcechowskyj, J. A., Davis, C., Piccoli, L., Pascall, D. J., Dillen, J., et al. (2021) · Cell · doi:10.1016/j.cell.2021.01.037 · Cited by 606
Self-citationCerutti, G., Guo, Y., Zhou, T., Gorman, J., Lee, M., Rapp, M., Reddem, E. R., Yu, J., Bahna, F., Bimela, J., et al. (2021) · Cell Host & Microbe · doi:10.1016/j.chom.2021.03.005 · Cited by 519
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Self-citationStern, A. M., Yang, Y., Jin, S., Yamashita, K., Meunier, A. L., Liu, W., Cai, Y., Ericsson, M., Liu, L., Goedert, M., et al. (2023) · Neuron · doi:10.1016/j.neuron.2023.04.007 · Cited by 91
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Lee, K., Thwin, A. C., Nadel, C. M., Tse, E., Gates, S. N., Gestwicki, J. E., & Southworth, D. R. (2021) · Molecular Cell · doi:10.1016/j.molcel.2021.07.023 · Cited by 76
Gupta, M., Azumaya, C. M., Moritz, M., Pourmal, S., Diallo, A., Merz, G. E., Jang, G., Bouhaddou, M., Fossati, A., Brilot, A. F., et al. (2021) · doi:10.1101/2021.05.10.443524 · Cited by 89
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Zhao, C.-R., You, Z.-L., Chen, D.-D., Hang, J., Wang, Z.-B., Ji, M., Wang, L.-X., Zhao, P., Qiao, J., Yun, C.-H., et al. (2023) · Science Advances · doi:10.1126/sciadv.adh7820 · Cited by 75
Madera, S., Kistler, A., Ranaivoson, H. C., Ahyong, V., Andrianiaina, A., Andry, S., Raharinosy, V., Randriambolamanantsoa, T. H., Ravelomanantsoa, N. A. F., Tato, C. M., et al. (2022) · Journal of Virology · doi:10.1128/jvi.00921-22 · Cited by 74
Donohoue, P. D., Pacesa, M., Lau, E., Vidal, B., Irby, M. J., Nyer, D. B., Rotstein, T., Banh, L., Toh, M. S., Gibson, J., et al. (2021) · Molecular Cell · doi:10.1016/j.molcel.2021.07.035 · Cited by 69
Fonager, J., Bennedbæk, M., Bager, P., Wohlfahrt, J., Ellegaard, K. M., Ingham, A. C., Edslev, S. M., Stegger, M., Sieber, R. N., Lassauniere, R., et al. (2022) · Eurosurveillance · doi:10.2807/1560-7917.es.2022.27.10.2200181 · Cited by 78
Giri, N., Roy, R. S., & Cheng, J. (2023) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2023.102536 · Cited by 59
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Wang, F., Chan, C. H., Suciu, V., Mustafa, K., Ammend, M., Si, D., Hochbaum, A. I., Egelman, E. H., & Bond, D. R. (2022) · eLife · doi:10.7554/elife.81551 · Cited by 69
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Sugihara, Y., Abe, Y., Takagi, H., Abe, A., Shimizu, M., Ito, K., Kanzaki, E., Oikawa, K., Kourelis, J., Langner, T., et al. (2023) · PLOS Biology · doi:10.1371/journal.pbio.3001945 · Cited by 59
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Qin, J., Cai, Y., Xu, Z., Ming, Q., Ji, S.-Y., Wu, C., Zhang, H., Mao, C., Shen, D.-D., Hirata, K., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-27975-9 · Cited by 57
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Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R. C., Hall, T. M. T., Zamore, P. D., & Korostelev, A. A. (2022) · Molecular Cell · doi:10.1016/j.molcel.2022.09.002 · Cited by 57
Structural basis for Parkinson’s disease-linked LRRK2’s binding to microtubules
Snead, D. M., Matyszewski, M., Dickey, A. M., Lin, Y. X., Leschziner, A. E., & Reck-Peterson, S. L. (2022) · Nature Structural & Molecular Biology · doi:10.1038/s41594-022-00863-y · Cited by 54
DNA-measuring Wadjet SMC ATPases restrict smaller circular plasmids by DNA cleavage
Liu, H. W., Roisné-Hamelin, F., Beckert, B., Li, Y., Myasnikov, A., & Gruber, S. (2022) · Molecular Cell · doi:10.1016/j.molcel.2022.11.015 · Cited by 53
Adriaenssens, E., Schaar, S., Cook, A. S. I., Stuke, J. F. M., Sawa-Makarska, J., Nguyen, T. N., Ren, X., Schuschnig, M., Romanov, J., Khuu, G., et al. (2025) · Nature Cell Biology · doi:10.1038/s41556-025-01712-y · Cited by 53
In situ single particle classification reveals distinct 60S maturation intermediates in cells
Lucas, B. A., Zhang, K., Loerch, S., & Grigorieff, N. (2022) · eLife · doi:10.7554/elife.79272 · Cited by 53
Cryo-EM structure of the cytosolic AhR complex.
Wen, Z., Zhang, Y., Zhang, B., Hang, Y., Xu, L., Chen, Y., Xie, Q., Zhao, Q., Zhang, L., Li, G., et al. (2023) · Structure · doi:10.1016/j.str.2022.12.013 · Cited by 51
Structural organization of the retriever–CCC endosomal recycling complex
Boesch, D. J., Singla, A., Han, Y., Kramer, D. A., Liu, Q., Suzuki, K., Juneja, P., Zhao, X., Long, X., Medlyn, M. J., et al. (2024) · Nature Structural & Molecular Biology · doi:10.1038/s41594-023-01184-4 · Cited by 52
Conformational motions and ligand-binding underlying gating and regulation in IP3R channel
Fan, G., Baker, M. R., Terry, L. E., Arige, V., Chen, M., Seryshev, A. B., Baker, M. L., Ludtke, S. J., Yule, D. I., & Serysheva, I. I. (2022) · Nature Communications · doi:10.1038/s41467-022-34574-1 · Cited by 52
Cryptochrome–Timeless structure reveals circadian clock timing mechanisms
Lin, C., Feng, S., DeOliveira, C. C., & Crane, B. R. (2023) · Nature · doi:10.1038/s41586-023-06009-4 · Cited by 51
Allosteric interactions prime androgen receptor dimerization and activation
Wasmuth, E. V., Broeck, A. V., LaClair, J. R., Hoover, E. A., Lawrence, K. E., Paknejad, N., Pappas, K., Matthies, D., Wang, B., Feng, W., et al. (2022) · Molecular Cell · doi:10.1016/j.molcel.2022.03.035 · Cited by 50
Barh, D., Tiwari, S., Rodrigues Gomes, L. G., Ramalho Pinto, C. H., Andrade, B. S., Ahmad, S., Aljabali, A. A. A., Alzahrani, K. J., Banjer, H. J., Hassan, S. S., et al. (2023) · Inflammation · doi:10.1007/s10753-022-01734-w · Cited by 50
Kouba, T., Vogel, D., Thorkelsson, S. R., Quemin, E. R. J., Williams, H. M., Milewski, M., Busch, C., Günther, S., Grünewald, K., Rosenthal, M., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-27305-5 · Cited by 50
Structural basis for lipid transfer by the ATG2A–ATG9A complex
(2024) · doi:10.1038/s41594-024-01376-6 · Cited by 50
Clamping of DNA shuts the condensin neck gate
Lee, B.-G., Rhodes, J., & Löwe, J. (2022) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2120006119 · Cited by 49
Castells-Graells, R., Meador, K., Arbing, M. A., Sawaya, M. R., Gee, M., Cascio, D., Gleave, E., Debreczeni, J. É., Breed, J., Leopold, K., et al. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2305494120 · Cited by 48
Mechanism of glycogen synthase inactivation and interaction with glycogenin
Marr, L., Biswas, D., Daly, L. A., Browning, C., Vial, S. C. M., Maskell, D. P., Hudson, C., Bertrand, J. A., Pollard, J., Ranson, N. A., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-31109-6 · Cited by 47
piRNA processing by a trimeric Schlafen-domain nuclease
Podvalnaya, N., Bronkhorst, A. W., Lichtenberger, R., Hellmann, S., Nischwitz, E., Falk, T., Karaulanov, E., Butter, F., Falk, S., & Ketting, R. F. (2023) · Nature · doi:10.1038/s41586-023-06588-2 · Cited by 47
Structure and interactions of the endogenous human Commander complex
Laulumaa, S., Kumpula, E.-P., Huiskonen, J. T., & Varjosalo, M. (2024) · Nature Structural & Molecular Biology · doi:10.1038/s41594-024-01246-1 · Cited by 46
Bentham, A. R., De la Concepcion, J. C., Benjumea, J. V., Kourelis, J., Jones, S., Mendel, M., Stubbs, J., Stevenson, C. E. M., Maidment, J. H. R., Youles, M., et al. (2023) · The Plant Cell · doi:10.1093/plcell/koad204 · Cited by 46
Structures and activation mechanism of the Gabija anti-phage system
Li, J., Cheng, R., Wang, Z., Yuan, W., Xiao, J., Zhao, X., Du, X., Xia, S., Wang, L., Zhu, B., et al. (2024) · Nature · doi:10.1038/s41586-024-07270-x · Cited by 46
Biogenesis of a bacterial metabolosome for propanediol utilization
Yang, M., Wenner, N., Dykes, G. F., Li, Y., Zhu, X., Sun, Y., Huang, F., Hinton, J. C. D., & Liu, L.-N. (2022) · Nature Communications · doi:10.1038/s41467-022-30608-w · Cited by 45
Structure of the IL-27 quaternary receptor signaling complex
(2022) · doi:10.7554/elife.78463 · Cited by 44
High-resolution functional mapping of RAD51C by saturation genome editing
Olvera-León, R., Zhang, F., Offord, V., Zhao, Y., Tan, H. K., Gupta, P., Pal, T., Robles-Espinoza, C. D., Arriaga-González, F. G., Matsuyama, L. S. A. S., et al. (2024) · Cell · doi:10.1016/j.cell.2024.08.039 · Cited by 44
The structure of apolipoprotein B100 from human low-density lipoprotein
Berndsen, Z. T., & Cassidy, C. K. (2025) · Nature · doi:10.1038/s41586-024-08467-w · Cited by 43
Obana, N., Takada, H., Crowe-McAuliffe, C., Iwamoto, M., Egorov, A. A., Wu, K. J. Y., Chiba, S., Murina, V., Paternoga, H., Tresco, B. I. C., et al. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad193 · Cited by 42
Structure of the human outer kinetochore KMN network complex
Yatskevich, S., Yang, J., Bellini, D., Zhang, Z., & Barford, D. (2024) · Nature Structural & Molecular Biology · doi:10.1038/s41594-024-01249-y · Cited by 42
Mercado-Evans, V., Mejia, M. E., Zulk, J. J., Ottinger, S., Hameed, Z. A., Serchejian, C., Marunde, M. G., Robertson, C. M., Ballard, M. B., Ruano, S. H., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-45336-6 · Cited by 40
Metadata
- Authors
- Pettersen, E. F., Goddard, T. D., Huang, C. C., Meng, E. C., Couch, G. S., Croll, T. I., Morris, J. H., & Ferrin, T. E.
- Venue
- Protein Science
- Publisher
- Wiley
- Published
- 2020-10-22
- Volume
- 30
- Issue
- 1
- Pages
- 70-82
- ISSN
- 0961-8368 (ISSN-L)
- 1469-896X
- OpenAlex
- W3083406432
- Cited by
- 9,514
- References
- 5
- FWCI
- 328.06
- Type
- journal article
- Language
- en
- Open access
- bronze
- Funders
- National Institute of Allergy and Infectious Diseases
- National Institute of General Medical Sciences (R01‐GM129325)
- Wellcome Trust (209407/Z/17/Z)
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.