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UCSF ChimeraX: Structure visualization for researchers, educators, and developers
Open accessAbstract
UCSF ChimeraX is the next‐generation interactive visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX brings (a) significant performance and graphics enhancements; (b) new implementations of Chimera's most highly used tools, many with further improvements; (c) several entirely new analysis features; (d) support for new areas such as virtual reality, light‐sheet microscopy, and medical imaging data; (e) major ease‐of‐use advances, including toolbars with icons to perform actions with a single click, basic “undo” capabilities, and more logical and consistent commands; and (f) an app store for researchers to contribute new tools. ChimeraX includes full user documentation and is free for noncommercial use, with downloads available for Windows, Linux, and macOS from https://www.rbvi.ucsf.edu/chimerax.
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Beutler, M., Harnischfeger, J., Weber, M. H. W., Hahnel, S. R., Quack, T., Blohm, A., Ueberall, M. E., Timm, T., Lochnit, G., Rennar, G. A., et al. (2023) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2023.115179 · Cited by 10
Kawaguchi, S., Xu, X., Soga, T., Yamaguchi, K., Kawasaki, R., Shimouchi, R., Date, S., & Kai, T. (2025) · eLife · doi:10.7554/elife.101967.3 · Cited by 10
Körner, C., Schäfer, J.-H., Esch, B. M., Parey, K., Walter, S., Teis, D., Januliene, D., Schmidt, O., Moeller, A., & Fröhlich, F. (2024) · Cell Reports · doi:10.1016/j.celrep.2024.114627 · Cited by 10
Structural insights into SSNA1 self-assembly and its microtubule binding for centriole maintenance
Agostini, L., Pfister, J. A., Basnet, N., Ding, J., Zhang, R., Biertümpfel, C., O’Connell, K. F., & Mizuno, N. (2025) · Nature Communications · doi:10.1038/s41467-025-62696-9 · Cited by 10
Shinde, S. S., Sharma, S., Teekas, L., Sharma, A., & Vijay, N. (2021) · Scientific Reports · doi:10.1038/s41598-021-04077-y · Cited by 10
PERK-mediated antioxidant response is key for pathogen persistence in ticks
Rosche, K. L., Hurtado, J., Fisk, E. A., Vosbigian, K. A., Warren, A. L., Sidak-Loftis, L. C., Wright, S. J., Ramirez-Zepp, E., Park, J. M., & Shaw, D. K. (2023) · mSphere · doi:10.1128/msphere.00321-23 · Cited by 10
Structural basis of nucleosomal H4K20 recognition and methylation by SUV420H1 methyltransferase
Lin, F., Zhang, R., Shao, W., Lei, C., Ma, M., Zhang, Y., Wen, Z., & Li, W. (2023) · Cell Discovery · doi:10.1038/s41421-023-00620-5 · Cited by 10
Said, N., Finazzo, M., Hilal, T., Wang, B., Selinger, T. L., Gjorgjevikj, D., Artsimovitch, I., & Wahl, M. C. (2024) · Nature Communications · doi:10.1038/s41467-024-47439-6 · Cited by 10
Metadata
- Authors
- Pettersen, E. F., Goddard, T. D., Huang, C. C., Meng, E. C., Couch, G. S., Croll, T. I., Morris, J. H., & Ferrin, T. E.
- Venue
- Protein Science
- Publisher
- Wiley
- Published
- 2020-10-22
- Volume
- 30
- Issue
- 1
- Pages
- 70-82
- ISSN
- 0961-8368 (ISSN-L)
- 1469-896X
- OpenAlex
- W3083406432
- Cited by
- 9,514
- References
- 5
- FWCI
- 328.06
- Type
- journal article
- Language
- en
- Open access
- bronze
- Funders
- National Institute of Allergy and Infectious Diseases
- National Institute of General Medical Sciences (R01‐GM129325)
- Wellcome Trust (209407/Z/17/Z)
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.