The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
UCSF ChimeraX: Structure visualization for researchers, educators, and developers
Open accessAbstract
UCSF ChimeraX is the next‐generation interactive visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX brings (a) significant performance and graphics enhancements; (b) new implementations of Chimera's most highly used tools, many with further improvements; (c) several entirely new analysis features; (d) support for new areas such as virtual reality, light‐sheet microscopy, and medical imaging data; (e) major ease‐of‐use advances, including toolbars with icons to perform actions with a single click, basic “undo” capabilities, and more logical and consistent commands; and (f) an app store for researchers to contribute new tools. ChimeraX includes full user documentation and is free for noncommercial use, with downloads available for Windows, Linux, and macOS from https://www.rbvi.ucsf.edu/chimerax.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation
Wrapp, D., Wang, N., Corbett, K. S., Goldsmith, J. A., Hsieh, C.-L., Abiona, O., Graham, B. S., & McLellan, J. S. (2020) · Science · doi:10.1126/science.abb2507 · Cited by 8,897
UniProt: a worldwide hub of protein knowledge
The UniProt Consortium (2019) · Nucleic Acids Research · doi:10.1093/nar/gky1049 · Cited by 7,698
Announcing the worldwide Protein Data Bank
Berman, H., Henrick, K., & Nakamura, H. (2003) · Nature Structural & Molecular Biology · doi:10.1038/nsb1203-980 · Cited by 3,093
The chips are down for Moore’s law
Waldrop, M. M. (2016) · Nature · doi:10.1038/530144a · Cited by 2,397
Dense connectomic reconstruction in layer 4 of the somatosensory cortex
Motta, A., Berning, M., Boergens, K. M., Staffler, B., Beining, M., Loomba, S., Hennig, P., Wissler, H., & Helmstaedter, M. (2019) · Science · doi:10.1126/science.aay3134 · Cited by 333
Research works printed but not linked: 29
- 10.1038/nmeth.1427 · DOI
- 10.1073/pnas.1309947110 · DOI
- 10.1038/nprot.2010.126 · DOI
- 10.1016/j.str.2015.05.013 · DOI
- 10.1093/nar/gkp302 · DOI
- 10.1093/nar/gkq394 · DOI
- 10.1093/nar/gkq1021 · DOI · Paper page
- 10.1093/nar/gkq1091 · DOI · Paper page
- 10.1093/nar/gkv1126 · DOI · Paper page
- 10.1093/nar/gkv1290 · DOI
- 10.1093/nar/gku1221 · DOI · Paper page
- 10.1093/bioinformatics/btt138 · DOI
- 10.1093/nar/28.1.235 · DOI · Paper page
- 10.1002/jcc.20084 · DOI · Paper page
- 10.1016/j.str.2018.03.011 · DOI
- 10.1002/cpbi.48 · DOI
- 10.1186/1758-2946-3-32 · DOI
- 10.1002/pro.3235 · DOI · Paper page
- Croll TI, 2018, ISOLDE: A physically realistic environment for model building into low‐resolution electron‐density maps, Acta Cryst, 74, 519
- 10.1016/j.cell.2020.04.031 · DOI · Paper page
- 10.1016/j.jmb.2018.06.040 · DOI
- 10.1093/nar/gkw1118 · DOI
- 10.1093/bioinformatics/17.8.700 · DOI
- 10.1002/bip.22074 · DOI
- NakaneT KotechaA SenteA McMullanG MasiulisS Brown Patricia M. G. E. GrigorasIT MalinauskaiteL MalinauskasT MiehlingJ YuL KariaD PechnikovaEV deJongE KeizerJ BischoffM McCormackJ TiemeijerP HardwickSW ChirgadzeDY MurshudovG AricescuAR ScheresSHW(2020).Single‐particle cryo‐EM at atomic resolution.bioRxiv 110189. http://dx.doi.org/10.1101/2020.05.22.110189. · DOI
- 10.7554/eLife.53740 · DOI
- 10.1016/j.str.2008.03.005 · DOI
- 10.1093/nar/gnj031 · DOI
- 10.1093/nar/gku377 · DOI
Cited by
Items 101–200 of 494
Molecular basis of Wnt biogenesis, secretion, and Wnt7-specific signaling
Qi, X., Hu, Q., Elghobashi-Meinhardt, N., Long, T., Chen, H., & Li, X. (2023) · Cell · doi:10.1016/j.cell.2023.09.021 · Cited by 40
Cortactin stabilizes actin branches by bridging activated Arp2/3 to its nucleated actin filament
Liu, T., Cao, L., Mladenov, M., Jegou, A., Way, M., & Moores, C. A. (2024) · Nature Structural & Molecular Biology · doi:10.1038/s41594-023-01205-2 · Cited by 40
The PfRCR complex bridges malaria parasite and erythrocyte during invasion
Farrell, B., Alam, N., Hart, M. N., Jamwal, A., Ragotte, R. J., Walters-Morgan, H., Draper, S. J., Knuepfer, E., & Higgins, M. K. (2024) · Nature · doi:10.1038/s41586-023-06856-1 · Cited by 39
Peter, M. F., Depping, P., Schneberger, N., Severi, E., Gatterdam, K., Tindall, S., Durand, A., Heinz, V., Koenig, P.-A., Geyer, M., et al. (2021) · doi:10.1101/2021.12.03.471092 · Cited by 38
Structural and mechanistic analysis of a tripartite ATP-independent periplasmic TRAP transporter
Peter, M. F., Ruland, J. A., Depping, P., Schneberger, N., Severi, E., Moecking, J., Gatterdam, K., Tindall, S., Durand, A., Heinz, V., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-31907-y · Cited by 38
Chen, Z.-P., Xu, D., Wang, L., Mao, Y.-X., Li, Y., Cheng, M.-T., Zhou, C.-Z., Hou, W.-T., & Chen, Y. (2022) · Nature Communications · doi:10.1038/s41467-022-30974-5 · Cited by 37
Using AlphaFold Multimer to discover interkingdom protein–protein interactions
Homma, F., Lyu, J., & van der Hoorn, R. A. L. (2024) · The Plant Journal · doi:10.1111/tpj.16969 · Cited by 37
A promiscuous mechanism to phase separate eukaryotic carbon fixation in the green lineage
Barrett, J., Naduthodi, M. I. S., Mao, Y., Dégut, C., Musiał, S., Salter, A., Leake, M. C., Plevin, M. J., McCormick, A. J., Blaza, J. N., et al. (2024) · Nature Plants · doi:10.1038/s41477-024-01812-x · Cited by 37
Oxygen metabolism in descendants of the archaeal-eukaryotic ancestor
Appler, K. E., Lingford, J. P., Gong, X., Panagiotou, K., Leão, P., Langwig, M. V., Greening, C., Ettema, T. J. G., De Anda, V., & Baker, B. J. (2026) · Nature · doi:10.1038/s41586-026-10128-z · Cited by 36
Oxygen metabolism in descendants of the archaeal-eukaryotic ancestor
Appler, K. E., Lingford, J. P., Gong, X., Panagiotou, K., Leão, P., Langwig, M., Greening, C., Ettema, T. J. G., De Anda, V., & Baker, B. J. (2024) · doi:10.1101/2024.07.04.601786 · Cited by 36
Diversity, origin, and evolution of the ESCRT systems
Makarova, K. S., Tobiasson, V., Wolf, Y. I., Lu, Z., Liu, Y., Zhang, S., Krupovic, M., Li, M., & Koonin, E. V. (2024) · mBio · doi:10.1128/mbio.00335-24 · Cited by 36
AlphaFold2 enables accurate deorphanization of ligands to single-pass receptors
Banhos Danneskiold-Samsøe, N., Kavi, D., Jude, K. M., Nissen, S. B., Wat, L. W., Coassolo, L., Zhao, M., Santana-Oikawa, G. A., Broido, B. B., Garcia, K. C., et al. (2024) · Cell Systems · doi:10.1016/j.cels.2024.10.004 · Cited by 35
Cryo-EM structure of the Smc5/6 holo-complex
Hallett, S. T., Campbell Harry, I., Schellenberger, P., Zhou, L., Cronin, N. B., Baxter, J., Etheridge, T. J., Murray, J. M., & Oliver, A. W. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkac692 · Cited by 35
Cryo-EM structures of an LRRC8 chimera with native functional properties reveal heptameric assembly
Takahashi, H., Yamada, T., Denton, J. S., Strange, K., & Karakas, E. (2023) · eLife · doi:10.7554/elife.82431 · Cited by 35
Vuckovic, Z., Wang, J., Pham, V., Mobbs, J. I., Belousoff, M. J., Bhattarai, A., Burger, W. A., Thompson, G., Yeasmin, M., Nawaratne, V., et al. (2023) · eLife · doi:10.7554/elife.83477 · Cited by 34
Structural basis for plasmid restriction by SMC JET nuclease
Roisné-Hamelin, F., Liu, H. W., Taschner, M., Li, Y., & Gruber, S. (2024) · Molecular Cell · doi:10.1016/j.molcel.2024.01.009 · Cited by 34
Structure and mechanism of a tripartite ATP-independent periplasmic TRAP transporter
Davies, J. S., Currie, M. J., North, R. A., Scalise, M., Wright, J. D., Copping, J. M., Remus, D. M., Gulati, A., Morado, D. R., Jamieson, S. A., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-36590-1 · Cited by 34
Structural insight into Tn3 family transposition mechanism
Shkumatov, A. V., Aryanpour, N., Oger, C. A., Goossens, G., Hallet, B. F., & Efremov, R. G. (2022) · Nature Communications · doi:10.1038/s41467-022-33871-z · Cited by 34
Structural pathway for PI3-kinase regulation by VPS15 in autophagy
Cook, A. S. I., Chen, M., Nguyen, T. N., Cabezudo, A. C., Khuu, G., Rao, S., Garcia, S. N., Yang, M., Iavarone, A. T., Ren, X., et al. (2025) · Science · doi:10.1126/science.adl3787 · Cited by 34
Urayama, S.-I., Fukudome, A., Hirai, M., Okumura, T., Nishimura, Y., Takaki, Y., Kurosawa, N., Koonin, E. V., Krupovic, M., & Nunoura, T. (2024) · Nature Microbiology · doi:10.1038/s41564-023-01579-5 · Cited by 34
Tan, C. C. S., Trew, J., Peacock, T. P., Mok, K. Y., Hart, C., Lau, K., Ni, D., Orme, C. D. L., Ransome, E., Pearse, W. D., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-38717-w · Cited by 34
Modifying immune responses to adeno-associated virus vectors by capsid engineering
Bentler, M., Hardet, R., Ertelt, M., Rudolf, D., Kaniowska, D., Schneider, A., Vondran, F. W. R., Schoeder, C. T., Delphin, M., Lucifora, J., et al. (2023) · Molecular Therapy - Methods & Clinical Development · doi:10.1016/j.omtm.2023.08.015 · Cited by 34
Using AlphaFold for Rapid and Accurate Fixed Backbone Protein Design
Moffat, L., Greener, J. G., & Jones, D. T. (2021) · doi:10.1101/2021.08.24.457549 · Cited by 33
Molecular architecture of synaptic vesicles
Kravčenko, U., Ruwolt, M., Kroll, J., Yushkevich, A., Zenkner, M., Ruta, J., Lotfy, R., Wanker, E. E., Rosenmund, C., Liu, F., et al. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2407375121 · Cited by 33
Genome expansion by a CRISPR trimmer-integrase
Wang, J. Y., Tuck, O. T., Skopintsev, P., Soczek, K. M., Li, G., Al-Shayeb, B., Zhou, J., & Doudna, J. A. (2023) · Nature · doi:10.1038/s41586-023-06178-2 · Cited by 33
Molecular mechanism of substrate recognition by folate transporter SLC19A1
Dang, Y., Zhou, D., Du, X., Zhao, H., Lee, C.-H., Yang, J., Wang, Y., Qin, C., Guo, Z., & Zhang, Z. (2022) · Cell Discovery · doi:10.1038/s41421-022-00508-w · Cited by 33
Rieske head domain dynamics and indazole-derivative inhibition of Candida albicans complex III
Di Trani, J. M., Liu, Z., Whitesell, L., Brzezinski, P., Cowen, L. E., & Rubinstein, J. L. (2022) · Structure · doi:10.1016/j.str.2021.08.006 · Cited by 32
Molecular basis of mRNA delivery to the bacterial ribosome
Webster, M. W., Chauvier, A., Rahil, H., Graziadei, A., Charles, K., Miropolskaya, N., Takacs, M., Saint-André, C., Rappsilber, J., Walter, N. G., et al. (2024) · Science · doi:10.1126/science.ado8476 · Cited by 32
The kidney slit diaphragm resembles a fishnet
Birtasu, A. N., Wieland, K., Ermel, U. H., Arghittu, S. M., Manger, S., Kocylowski, M. K., Fakler, B., Scheffer, M. P., Covino, R., Grahammer, F., et al. (2025) · Kidney International · doi:10.1016/j.kint.2025.08.028 · Cited by 32
Bacterial Shedu immune nucleases share a common enzymatic core regulated by diverse sensor domains
Gu, Y., Li, H., Deep, A., Enustun, E., Zhang, D., & Corbett, K. D. (2025) · Molecular Cell · doi:10.1016/j.molcel.2024.12.004 · Cited by 32
Després, P. C., Cisneros, A. F., Alexander, E. M. M., Sonigara, R., Gagné-Thivierge, C., Dubé, A. K., & Landry, C. R. (2022) · Nature Ecology & Evolution · doi:10.1038/s41559-022-01846-4 · Cited by 32
Long, T., Li, D., Vale, G., Jiang, Y., Schmiege, P., Yang, Z. J., McDonald, J. G., & Li, X. (2024) · Cell · doi:10.1016/j.cell.2024.08.004 · Cited by 31
Cryo‐EM structures of human ABCA7 provide insights into its phospholipid translocation mechanisms
Le, L. T. M., Thompson, J. R., Dehghani‐Ghahnaviyeh, S., Pant, S., Dang, P. X., French, J. B., Kanikeyo, T., Tajkhorshid, E., & Alam, A. (2023) · The EMBO Journal · doi:10.15252/embj.2022111065 · Cited by 31
Ogasawara, D., Konrad, D. B., Tan, Z. Y., Carey, K. L., Luo, J., Won, S. J., Li, H., Carter, T. R., DeMeester, K. E., Njomen, E., et al. (2024) · Cell Chemical Biology · doi:10.1016/j.chembiol.2024.10.005 · Cited by 31
Structure and mechanism of NALCN-FAM155A-UNC79-UNC80 channel complex
Kang, Y., & Chen, L. (2022) · Nature Communications · doi:10.1038/s41467-022-30403-7 · Cited by 31
Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane
Park, S. H., Han, J., Jeong, B.-C., Song, J. H., Jang, S. H., Jeong, H., Kim, B. H., Ko, Y.-G., Park, Z.-Y., Lee, K. E., et al. (2023) · Nature Structural & Molecular Biology · doi:10.1038/s41594-023-01111-7 · Cited by 31
Proteogenomics reveals sex-biased aging genes and coordinated splicing in cardiac aging
Han, Y., Wennersten, S. A., Wright, J. M., Ludwig, R. W., Lau, E., & Lam, M. P. Y. (2022) · American Journal of Physiology-Heart and Circulatory Physiology · doi:10.1152/ajpheart.00244.2022 · Cited by 31
Mechanism of orphan subunit recognition during assembly quality control
Yagita, Y., Zavodszky, E., Peak-Chew, S.-Y., & Hegde, R. S. (2023) · Cell · doi:10.1016/j.cell.2023.06.016 · Cited by 30
RNA targeting and cleavage by the type III-Dv CRISPR effector complex
Schwartz, E. A., Bravo, J. P. K., Ahsan, M., Macias, L. A., McCafferty, C. L., Dangerfield, T. L., Walker, J. N., Brodbelt, J. S., Palermo, G., Fineran, P. C., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-47506-y · Cited by 30
Montellier, E., Lemonnier, N., Penkert, J., Freycon, C., Blanchet, S., Amadou, A., Chuffart, F., Fischer, N. W., Achatz, M.-I., Levine, A. J., et al. (2024) · iScience · doi:10.1016/j.isci.2024.111296 · Cited by 29
Chromatin binding by HORMAD proteins regulates meiotic recombination initiation
Milano, C. R., Ur, S. N., Gu, Y., Zhang, J., Allison, R., Brown, G., Neale, M. J., Tromer, E. C., Corbett, K. D., & Hochwagen, A. (2024) · The EMBO Journal · doi:10.1038/s44318-024-00034-3 · Cited by 29
Extracellular domain of PepT1 interacts with TM1 to facilitate substrate transport
Shen, J., Hu, M., Fan, X., Ren, Z., Portioli, C., Yan, X., Rong, M., & Zhou, M. (2022) · Structure · doi:10.1016/j.str.2022.04.011 · Cited by 29
Yan, Y., Xiao, J., Huang, F., Xian, W., Yu, B., Cheng, R., Wu, H., Lu, X., Wang, X., Huang, W., et al. (2024) · Nature Microbiology · doi:10.1038/s41564-024-01684-z · Cited by 29
Foldcomp: a library and format for compressing and indexing large protein structure sets
Kim, H., Mirdita, M., & Steinegger, M. (2023) · Bioinformatics · doi:10.1093/bioinformatics/btad153 · Cited by 29
Modeling the Orthosteric Binding Site of the G Protein-Coupled Odorant Receptor OR5K1
Nicoli, A., Haag, F., Marcinek, P., He, R., Kreißl, J., Stein, J., Marchetto, A., Dunkel, A., Hofmann, T., Krautwurst, D., et al. (2023) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.2c00752 · Cited by 28
Barreiro, A., Prenafeta, A., Bech-Sabat, G., Roca, M., Perozo Mur, E., March, R., González-González, L., Madrenas, L., Corominas, J., Fernández, A., et al. (2023) · iScience · doi:10.1016/j.isci.2023.106126 · Cited by 28
The RIX domain defines a class of polymorphic T6SS effectors and secreted adaptors
Kanarek, K., Fridman, C. M., Bosis, E., & Salomon, D. (2023) · Nature Communications · doi:10.1038/s41467-023-40659-2 · Cited by 27
Toulmé, E., Salazar Lázaro, A., Trimbuch, T., Rizo, J., & Rosenmund, C. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2409636121 · Cited by 27
Yang, Y., Boardman, E., Deme, J., Alcock, F., Lea, S., & Palmer, T. (2023) · mBio · doi:10.1128/mbio.02100-23 · Cited by 27
Conformational changes linked to ADP release from human cardiac myosin bound to actin-tropomyosin
Doran, M. H., Rynkiewicz, M. J., Rasicci, D., Bodt, S. M. L., Barry, M. E., Bullitt, E., Yengo, C. M., Moore, J. R., & Lehman, W. (2023) · Journal of General Physiology · doi:10.1085/jgp.202213267 · Cited by 27
FilamentID reveals the composition and function of metabolic enzyme polymers during gametogenesis
Hugener, J., Xu, J., Wettstein, R., Ioannidi, L., Velikov, D., Wollweber, F., Henggeler, A., Matos, J., & Pilhofer, M. (2024) · Cell · doi:10.1016/j.cell.2024.04.026 · Cited by 26
DdmDE eliminates plasmid invasion by DNA-guided DNA targeting
Yang, X.-Y., Shen, Z., Wang, C., Nakanishi, K., & Fu, T.-M. (2024) · Cell · doi:10.1016/j.cell.2024.07.028 · Cited by 26
Structural basis for an early stage of the photosystem II repair cycle in Chlamydomonas reinhardtii
Li, A., You, T., Pang, X., Wang, Y., Tian, L., Li, X., & Liu, Z. (2024) · Nature Communications · doi:10.1038/s41467-024-49532-2 · Cited by 26
Substrate recognition principles for the PP2A-B55 protein phosphatase
Kruse, T., Garvanska, D. H., Varga, J. K., Garland, W., McEwan, B. C., Hein, J. B., Weisser, M. B., Benavides-Puy, I., Chan, C. B., Sotelo-Parrilla, P., et al. (2024) · Science Advances · doi:10.1126/sciadv.adp5491 · Cited by 26
CryoDRGN-AI: neural ab initio reconstruction of challenging cryo-EM and cryo-ET datasets
Levy, A., Raghu, R., Feathers, J. R., Grzadkowski, M., Poitevin, F., Johnston, J. D., Vallese, F., Clarke, O. B., Wetzstein, G., & Zhong, E. D. (2025) · Nature Methods · doi:10.1038/s41592-025-02720-4 · Cited by 25
Sanghai, Z. A., Piwowarczyk, R., Broeck, A. V., & Klinge, S. (2023) · Nature Structural & Molecular Biology · doi:10.1038/s41594-023-00947-3 · Cited by 25
Structure and dynamics of differential ligand binding in the human ρ-type GABAA receptor
Cowgill, J., Fan, C., Haloi, N., Tobiasson, V., Zhuang, Y., Howard, R. J., & Lindahl, E. (2023) · Neuron · doi:10.1016/j.neuron.2023.08.006 · Cited by 25
Structural insights into binding-site access and ligand recognition by human ABCB1
Kurre, D., Dang, P. X., Le, L. T. M., Gadkari, V. V., & Alam, A. (2025) · The EMBO Journal · doi:10.1038/s44318-025-00361-z · Cited by 25
Design in the DARK: Learning Deep Generative Models for De Novo Protein Design
Moffat, L., Kandathil, S. M., & Jones, D. T. (2022) · doi:10.1101/2022.01.27.478087 · Cited by 25
Unique structural features govern the activity of a human mitochondrial AAA+ disaggregase, Skd3
Cupo, R. R., Rizo, A. N., Braun, G. A., Tse, E., Chuang, E., Gupta, K., Southworth, D. R., & Shorter, J. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.111408 · Cited by 25
Structure and host specificity of Staphylococcus epidermidis bacteriophage Andhra
Hawkins, N. C., Kizziah, J. L., Hatoum-Aslan, A., & Dokland, T. (2022) · Science Advances · doi:10.1126/sciadv.ade0459 · Cited by 25
Structural basis of the mechanism and inhibition of a human ceramide synthase
Pascoa, T. C., Pike, A. C. W., Tautermann, C. S., Chi, G., Traub, M., Quigley, A., Chalk, R., Štefanić, S., Thamm, S., Pautsch, A., et al. (2025) · Nature Structural & Molecular Biology · doi:10.1038/s41594-024-01414-3 · Cited by 25
Molecular principles of redox-coupled sodium pumping of the ancient Rnf machinery
Kumar, A., Roth, J., Kim, H., Saura, P., Bohn, S., Reif-Trauttmansdorff, T., Schubert, A., Kaila, V. R. I., Schuller, J. M., & Müller, V. (2025) · Nature Communications · doi:10.1038/s41467-025-57375-8 · Cited by 24
Buffering of genetic dominance by allele-specific protein complex assembly
Badonyi, M., & Marsh, J. A. (2023) · Science Advances · doi:10.1126/sciadv.adf9845 · Cited by 24
Structural diversity and clustering of bacterial flagellar outer domains
Fields, J. L., Zhang, H., Bellis, N. F., Petersen, H. A., Halder, S. K., Rich-New, S. T., Krupovic, M., Wu, H., & Wang, F. (2024) · Nature Communications · doi:10.1038/s41467-024-53923-w · Cited by 23
Structural basis for Retriever-SNX17 assembly and endosomal sorting
Singla, A., Boesch, D. J., Fung, H. Y. J., Ngoka, C., Enriquez, A. S., Song, R., Kramer, D. A., Han, Y., Banarer, E., Lemoff, A., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-54583-6 · Cited by 23
Rapid UPF1 depletion illuminates the temporal dynamics of the NMD-regulated human transcriptome
Boehm, V., Wallmeroth, D., Wulf, P. O., Popp, O., Teixeira Alves, L. G., Reinecke, L., Riedel, M., Wyler, E., Franitza, M., Becker, K., et al. (2025) · Molecular Cell · doi:10.1016/j.molcel.2025.08.015 · Cited by 23
Structural insights into human TFIIIC promoter recognition
(2023) · doi:10.1126/sciadv.adh2019 · Cited by 23
Structures of human dynein in complex with the lissencephaly 1 protein, LIS1
Reimer, J. M., DeSantis, M. E., Reck-Peterson, S. L., & Leschziner, A. E. (2023) · eLife · doi:10.7554/elife.84302 · Cited by 23
Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate
Rüttermann, M., Koci, M., Lill, P., Geladas, E. D., Kaschani, F., Klink, B. U., Erdmann, R., & Gatsogiannis, C. (2023) · Nature Communications · doi:10.1038/s41467-023-41640-9 · Cited by 23
Characterizing glucokinase variant mechanisms using a multiplexed abundance assay
Gersing, S., Schulze, T. K., Cagiada, M., Stein, A., Roth, F. P., Lindorff-Larsen, K., & Hartmann-Petersen, R. (2024) · Genome Biology · doi:10.1186/s13059-024-03238-2 · Cited by 23
MacRae, M. R., Puvanendran, D., Haase, M. A. B., Coudray, N., Kolich, L., Lam, C., Baek, M., Bhabha, G., & Ekiert, D. C. (2023) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2023.104744 · Cited by 23
SUMOylation of the m6A reader YTHDF2 by PIAS1 promotes viral RNA decay to restrict EBV replication
Sugiokto, F. G., Saiada, F., Zhang, K., & Li, R. (2024) · mBio · doi:10.1128/mbio.03168-23 · Cited by 23
Discovery of archaeal Fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
Moi, D., Nishio, S., Li, X., Valansi, C., Langleib, M., Brukman, N. G., Flyak, K., Dessimoz, C., de Sanctis, D., Tunyasuvunakool, K., et al. (2021) · doi:10.1101/2021.10.13.464100 · Cited by 23
Tetracenomycin X sequesters peptidyl-tRNA during translation of QK motifs
Leroy, E. C., Perry, T. N., Renault, T. T., & Innis, C. A. (2023) · Nature Chemical Biology · doi:10.1038/s41589-023-01343-0 · Cited by 22
Structure and flexibility of the yeast NuA4 histone acetyltransferase complex
Zukin, S. A., Marunde, M. R., Popova, I. K., Soczek, K. M., Nogales, E., & Patel, A. B. (2022) · eLife · doi:10.7554/elife.81400 · Cited by 22
DNA-binding mechanism and evolution of replication protein A
(2023) · doi:10.1038/s41467-023-38048-w · Cited by 22
Structural basis underlying specific biochemical activities of non-muscle tropomyosin isoforms
Selvaraj, M., Kokate, S. B., Reggiano, G., Kogan, K., Kotila, T., Kremneva, E., DiMaio, F., Lappalainen, P., & Huiskonen, J. T. (2023) · Cell Reports · doi:10.1016/j.celrep.2022.111900 · Cited by 22
Assembly and architecture of the type III secretion sorting platform
Soto, J. E., Galán, J. E., & Lara-Tejero, M. (2022) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2218010119 · Cited by 22
Zhang, J., Wang, Y., Donarski, E. D., Toma, T. T., Miles, M. T., Acton, S. T., & Gahlmann, A. (2022) · npj Biofilms and Microbiomes · doi:10.1038/s41522-022-00362-4 · Cited by 22
Mobbs, J. I., Black, K. A., Tran, M., Burger, W. A. C., Venugopal, H., Holman, T. R., Holinstat, M., Thal, D. M., & Glukhova, A. (2023) · Blood · doi:10.1182/blood.2023020441 · Cited by 22
Structure of the recombinant RNA polymerase from African Swine Fever Virus
Pilotto, S., Sýkora, M., Cackett, G., Dulson, C., & Werner, F. (2024) · Nature Communications · doi:10.1038/s41467-024-45842-7 · Cited by 21
Tang, H., Lu, K.-J., Zhang, Y., Cheng, Y.-L., Tu, S.-L., & Friml, J. (2024) · Plant Communications · doi:10.1016/j.xplc.2023.100669 · Cited by 21
Bonchuk, A. N., Balagurov, K. I., Baradaran, R., Boyko, K. M., Sluchanko, N. N., Khrustaleva, A. M., Burtseva, A. D., Arkova, O. V., Khalisova, K. K., Popov, V. O., et al. (2024) · eLife · doi:10.7554/elife.96832 · Cited by 21
Ikenohuchi, Y. J., Silva, M. D. S., Rego, C. M. A., Francisco, A. F., da Silva Setúbal, S., Ferreira e Ferreira, A. A., Boeno, C. N., Santana, H. M., Felipin, K. P., de Lima, A. M., et al. (2023) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-023-04839-z · Cited by 20
Currie, M. J., Davies, J. S., Scalise, M., Gulati, A., Wright, J. D., Newton-Vesty, M. C., Abeysekera, G. S., Subramanian, R., Wahlgren, W. Y., Friemann, R., et al. (2024) · eLife · doi:10.7554/elife.92307.3 · Cited by 20
Molecular mechanism of active Cas7-11 in processing CRISPR RNA and interfering target RNA
Goswami, H. N., Rai, J., Das, A., & Li, H. (2022) · eLife · doi:10.7554/elife.81678 · Cited by 20
Metadata
- Authors
- Pettersen, E. F., Goddard, T. D., Huang, C. C., Meng, E. C., Couch, G. S., Croll, T. I., Morris, J. H., & Ferrin, T. E.
- Venue
- Protein Science
- Publisher
- Wiley
- Published
- 2020-10-22
- Volume
- 30
- Issue
- 1
- Pages
- 70-82
- ISSN
- 0961-8368 (ISSN-L)
- 1469-896X
- OpenAlex
- W3083406432
- Cited by
- 9,514
- References
- 5
- FWCI
- 328.06
- Type
- journal article
- Language
- en
- Open access
- bronze
- Funders
- National Institute of Allergy and Infectious Diseases
- National Institute of General Medical Sciences (R01‐GM129325)
- Wellcome Trust (209407/Z/17/Z)
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.