Cited by 22Alzheimer's disease research and treatmentsNeuroinflammation and Neurodegeneration MechanismsDementia and Cognitive Impairment Research

Enhanced microglial dynamics and a paucity of tau seeding in the amyloid plaque microenvironment contribute to cognitive resilience in Alzheimer’s disease

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Jury-Garfe, Nur, Redding-Ochoa, Javier, You, Yanwen, Martínez, Pablo, Karahan, Hande, Chimal-Juárez, Enrique, Johnson, Travis S., Zhang, Jie +4 more·2024·Acta Neuropathologica

Abstract

Asymptomatic Alzheimer’s disease (AsymAD) describes the status of individuals with preserved cognition but identifiable Alzheimer’s disease (AD) brain pathology (i.e., beta-amyloid (Aβ) deposits, neuritic plaques, and neurofibrillary tangles) at autopsy. In this study, we investigated the postmortem brains of a cohort of AsymAD subjects to gain insight into the mechanisms underlying resilience to AD pathology and cognitive decline. Our results showed that AsymAD cases exhibit enrichment in core plaques, decreased filamentous plaque accumulation, and increased plaque-surrounding microglia. Less pathological tau aggregation in dystrophic neurites was found in AsymAD brains than in AD brains, and tau seeding activity was comparable to that in healthy brains. We used spatial transcriptomics to characterize the plaque niche further and revealed autophagy, endocytosis, and phagocytosis as the pathways associated with the genes upregulated in the AsymAD plaque niche. Furthermore, the levels of ARP2 and CAP1, which are actin-based motility proteins that participate in the dynamics of actin filaments to allow cell motility, were increased in the microglia surrounding amyloid plaques in AsymAD cases. Our findings suggest that the amyloid-plaque microenvironment in AsymAD cases is characterized by the presence of microglia with highly efficient actin-based cell motility mechanisms and decreased tau seeding compared with that in AD brains. These two mechanisms can potentially protect against the toxic cascade initiated by Aβ, preserving brain health, and slowing AD pathology progression.

AI snapshot

Written from the paper’s full text.

TL;DR

In postmortem middle frontal gyrus, asymptomatic Alzheimer’s disease (AsymAD) cases showed more compact plaques, less filamentous plaque accumulation, increased plaque-surrounding microglia, and reduced neuritic plaque tau and tau seeding compared with AD cases. Spatial transcriptomics and immunofluorescence further linked the AsymAD plaque niche to upregulated autophagy, endocytosis, phagocytosis, and actin-based motility pathways, including increased microglial ARP2 and CAP1.

Key findings

  • AsymAD and AD cases had no significant difference in total thioflavin S plaque number, but AsymAD cases showed a significant reduction in the proportion of filamentous plaques and a concomitant increase in compact plaques; NP-tau was dramatically decreased in the AsymAD plaque microenvironment (n = 13–19 cases per group; Fig. 1d p values *0.016 and *0.028).
  • Total tau levels were similar across control, AsymAD, and AD MFGs, but AsymAD lysates produced low tau seeding activity unlike AD lysates; AsymAD also had significantly lower oligomeric tau species, and SEC fraction 9 (>2000 kDa) showed the strongest AD seeding activity while AsymAD had significantly reduced seeding in that fraction despite similar total tau in F9 (n = 10 for ELISA/seeding; n = 5–9 for Western blot; n = 4 per group for SEC).
  • AsymAD MFGs had significantly greater IBA1 coverage around filamentous plaques than AD MFGs, whereas GFAP levels were decreased in intermediate plaques; no significant changes were observed for IBA1 around intermediate or compact plaques or for GFAP around filamentous or compact plaques (n = 13–19 cases per group).
  • GeoMx spatial transcriptomics identified 1799 DEGs in the plaque microenvironment: 813 upregulated in plaque-AsymAD and 986 in plaque-AD; 57 plaque-AsymAD DEGs versus 12 plaque-AD DEGs belonged to endocytic-, autophagy-, and phagocytic-related pathways, and these pathways were upregulated more than four times in plaque-AsymAD. ARP2 and CAP1 were increased in microglia surrounding amyloid plaques in AsymAD cases, and ACTR2 overexpression in HMC3 cells enhanced scratch-wound occupancy while ACTR2 downregulation left wound area unaltered from 40 h onward.

Methods

  • Postmortem middle frontal gyrus tissue from Johns Hopkins Alzheimer’s Disease Research Center and Baltimore Longitudinal Study of Aging; cases classified as controls (n = 13), AsymAD (n = 13), and AD (n = 19) using clinical and neuropathological criteria (Table 1).
  • Histology and immunofluorescence for thioflavin S plaques, Aβ (6E10/4G8), AT8, IBA1, GFAP, ARP2, and CAP1; image analysis for plaque circularity and per-plaque marker coverage; Western blot, size exclusion chromatography, tau ELISA, and tau RD P301S FRET biosensor seeding assays.
  • GeoMx human whole transcriptome atlas on amyloid plaque ROIs, with differential expression and pathway enrichment; HMC3 human microglial cell line ACTR2 overexpression/knockdown and scratch-wound assay; statistics included Shapiro–Wilk, t-tests, one-/two-way ANOVA, p < 0.05, and Benjamini–Hochberg FDR 0.01 for GeoMx.

Limitations

  • Stated: further studies with larger sample sizes are needed to assess sex differences; findings are limited to the middle frontal gyrus; mechanistic experiments are needed to assess the specific response of microglial ARP2/CAP1 to Aβ amyloid and tau.
  • Evident from the text: the spatial transcriptomics analysis used very few cases—two AD cases and one AsymAD case are indicated for GeoMx analyses—so the DEG and pathway findings are preliminary.
  • Evident from Table 1: the cohort is largely white and has uneven sex distribution across groups, which may limit generalizability.

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Integrity signals

Registry

Crossref · 10.1007/s00401-024-02775-1

Cites

116 of 116 references verified0 citation errors · 0 not checkable

Statistics

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Claims the paper makes

114 of 131 cited sources checked · 37 supported · 3 flagged · accuracy not yet measured

  • Premisecitation

    AsymAD cases exhibit an overall deficiency in oligomeric and soluble phospho-tau species, indicating fewer pathological tau species in these cases than in AD cases.

    “Consistent with our findings, previous studies have shown that AsymAD cases exhibit an overall deficiency in oligomeric and soluble phospho-tau species, indicating fewer pathological tau species in these cases than in AD cases [8, 73, 83].”
    Quote in the paperSubstantial claim3 of 3 sources checked
    • cites [8] Bjorklund NL, Reese LC, Sadagoparamanujam V-M, Ghirardi V, Woltjer RL, Taglialatela G (2012) Absence of amyloid β oligomers at the postsynapse and regulated synaptic Zn2+ in cognitively intact aged individuals with Alzheimer’s disease neuropathology. Mol Neurodegener 7:23. https://doi.org/10.1186/1750-1326-7-23 source

      The Discussion says hippocampal neurofibrillary tangles and hyperphosphorylated tau were comparable between AD and cognitively intact NDAN cases, contrary to the claimed overall deficiency of pathological tau. The paper does not report a comparison of oligomeric or soluble phospho-tau species; its oligomer measurements concern amyloid β. (LLM, conf=0.82)

      Checked by a reasoning model — may be wrong.

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    • cites [73] Perez-Nievas BG, Stein TD, Tai H-C, Dols-Icardo O, Scotton TC, Barroeta-Espar I et al (2013) Dissecting phenotypic traits linked to human resilience to Alzheimer’s pathology. Brain 136:2510–2526. https://doi.org/10.1093/brain/awt171 source

      The Results report that soluble hyperphosphorylated tau monomers and multimers accumulated in synapses in demented AD cases but not in high-probability mismatches. This supports fewer of those synaptic tau species in the asymptomatic cases, but not an overall deficiency in pathological tau: the Results also say neurofibrillary tangle counts did not significantly differ between the groups. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [83] Singh A, Allen D, Fracassi A, Tumurbaatar B, Natarajan C, Scaduto P et al (2020) Functional integrity of synapses in the central nervous system of cognitively intact individuals with high Alzheimer’s disease neuropathology is associated with absence of synaptic tau oligomers. J Alzheimers Dis 78:1661–1678. https://doi.org/10.3233/JAD-200716 source

      The Results section (“Reduced tau oligomer levels in the CNS of NDAN subjects as compared to AD patients”; page unavailable) reports significantly lower tau oligomers in NDAN than in AD in the frontal cortex and hippocampus. The paper does not report a corresponding comparison of soluble phospho-tau species, so that part of the attributed claim is unsupported by this source. (LLM, conf=0.88)

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  • Premisecitation

    Aged individuals can harbor a high burden of AD brain lesions at autopsy while remaining cognitively intact, indicating resilience to AD pathology.

    “several studies have revealed the existence of aged individuals harboring a high burden of brain lesions at autopsy while remaining cognitively intact, indicating resilience to AD pathology [3, 7, 21, 22, 56, 57, 68, 76, 78, 96].”
    Quote in the paperSubstantial claim5 of 10 sources checked
    • cites [3] Arriagada PV, Marzloff K, Hyman BT (1992) Distribution of Alzheimer-type pathologic changes in nondemented elderly individuals matches the pattern in Alzheimer’s disease. Neurology 42:1681–1681. https://doi.org/10.1212/WNL.42.9.1681 source
    • cites [7] Bennett DA, Buchman AS, Boyle PA, Barnes LL, Wilson RS, Schneider JA (2018) Religious orders study and rush memory and aging project. J Alzheimers Dis 64:S161–S189. https://doi.org/10.3233/JAD-179939 source
    • cites [21] Driscoll I, Troncoso J (2011) Brain resilience and plasticity in the face of Alzheimer pathology. Curr Alzheimer Res 8:329–329 source
    • cites [22] Driscoll I, Troncoso J (2012) Asymptomatic Alzheimer’s disease: a prodrome or a state of resilience? source
    • cites [56] Lopresti BJ, Klunk WE, Mathis CA, Hoge JA, Ziolko SK, Lu X, Meltzer CC, Schimmel K, Tsopelas ND, DeKosky ST, Price JC. Simplified quantification of Pittsburgh compound B amyloid imaging PET studies: a comparative analysis

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

    • cites [57] Corrada MM, Berlau JD, Kawas HC (2012) A population-based clinicopathological study in the oldest-old: the 90+ study. Curr Alzheimer Res 9:709–717. https://doi.org/10.2174/156720512801322537 source
    • cites [68] O’Brien RJ, Resnick SM, Zonderman AB, Ferrucci L, Crain BJ, Pletnikova O et al (2009) Neuropathologic studies of the Baltimore longitudinal study of aging (BLSA). J Alzheimers Dis 18:665–675. https://doi.org/10.3233/JAD-2009-1179 source
    • cites [76] Price JL, McKeel DW, Buckles VD, Roe CM, Xiong C, Grundman M et al (2009) Neuropathology of nondemented aging: presumptive evidence for preclinical Alzheimer disease. Neurobiol Aging 30:1026–1036. https://doi.org/10.1016/j.neurobiolaging.2009.04.002 source
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  • Premisecitation

    AsymAD brains have increased levels of anti-inflammatory cytokines.

    “low levels of proinflammatory cytokines, and increased levels of anti-inflammatory cytokines [5].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [5] Barroeta-Espar I, Weinstock LD, Perez-Nievas BG, Meltzer AC, Siao Tick Chong M, Amaral AC et al (2019) Distinct cytokine profiles in human brains resilient to Alzheimer’s pathology. Neurobiol Dis 121:327–337. https://doi.org/10.1016/j.nbd.2018.10.009 source
  • Premisecitation

    AsymAD brains exhibit decreased numbers of activated microglia and astrocyte cells compared with AD brains.

    “AsymAD brains have also been found to exhibit a neuroinflammatory profile distinct from that of AD brains, with decreased numbers of activated microglia and astrocyte cells [73]”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [73] Perez-Nievas BG, Stein TD, Tai H-C, Dols-Icardo O, Scotton TC, Barroeta-Espar I et al (2013) Dissecting phenotypic traits linked to human resilience to Alzheimer’s pathology. Brain 136:2510–2526. https://doi.org/10.1093/brain/awt171 source
  • Premisecitation

    Unlike in AD subjects with dementia, no phosphorylated tau accumulation occurs within synapses of AsymAD brains.

    “unlike in the brains of AD subjects with dementia, no phosphorylated tau accumulation occurs within the synapses of AsymAD brains [73, 83].”
    Quote in the paperSubstantial claim2 of 2 sources checked
    • cites [73] Perez-Nievas BG, Stein TD, Tai H-C, Dols-Icardo O, Scotton TC, Barroeta-Espar I et al (2013) Dissecting phenotypic traits linked to human resilience to Alzheimer’s pathology. Brain 136:2510–2526. https://doi.org/10.1093/brain/awt171 source

      The Results and Discussion report increased synaptic hyperphosphorylated tau in demented Alzheimer’s cases, but not in the non-demented high-pathology “mismatches” compared with controls. The claim’s absolute wording, “no phosphorylated tau accumulation,” goes beyond the paper’s finding of no significant or aberrant increase; it does not establish that phosphorylated tau is absent from those synapses. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
    • cites [83] Singh A, Allen D, Fracassi A, Tumurbaatar B, Natarajan C, Scaduto P et al (2020) Functional integrity of synapses in the central nervous system of cognitively intact individuals with high Alzheimer’s disease neuropathology is associated with absence of synaptic tau oligomers. J Alzheimers Dis 78:1661–1678. https://doi.org/10.3233/JAD-200716 source

      The Results (‘Decreased tau oligomers at synapses in NDAN subjects’; page unavailable) find substantially more synaptic tau oligomers in AD cases than in cognitively intact NDAN cases. The Discussion reports an absence of synaptic oligomeric tau in NDAN subjects, but the paper does not establish that no phosphorylated tau accumulates there: its synaptic analyses measure oligomeric or total tau, not specifically phosphorylated tau. (LLM, conf=0.86)

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  • Classified as probably not a substantial claim. 52
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  • The quote only partly states this claim. 1
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Omics and large cohort dataset analyses have identified potential cell signatures and molecular mechanisms of resilience, including high processing of energetic pathways involving mitochondrial metabolism and glycolysis, axonal and dendritic growth, and a general increase in protein processing.

    “Advancements in omics and large cohort dataset analyses have enabled the identification of potential cell signatures and molecular mechanisms of resilience, including high processing of energetic pathways involving mitochondrial metabolism and glycolysis, axonal and dendritic growth, and a general increase in protein processing [11, 90, 91].”
    Quote in the paperNot a substantial claim2 of 3 sources checked
    • cites [11] Carlyle BC, Kandigian SE, Kreuzer J, Das S, Trombetta BA, Kuo Y et al (2021) Synaptic proteins associated with cognitive performance and neuropathology in older humans revealed by multiplexed fractionated proteomics. Neurobiol Aging 105:99–114. https://doi.org/10.1016/j.neurobiolaging.2021.04.012 source

      Split into 2 atoms — 0 confirmed, 1 partially supported, 1 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Checked by a reasoning model — may be wrong.

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    • cites [90] Tandon R, Levey AI, Lah JJ, Seyfried NT, Mitchell CS (2023) Machine learning selection of most predictive brain proteins suggests role of sugar metabolism in Alzheimer’s disease. J Alzheimers Dis 92:411–424. https://doi.org/10.3233/JAD-220683 source

      Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

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    • cites [91] Telpoukhovskaia M, Hadad N, Gurdon B, Dai M, Ouellette AR, Neuner S et al (2022) Conserved cell-type specific signature of resilience to Alzheimer’s disease nominates role for excitatory cortical neurons. Alzheimers Dement. https://doi.org/10.1002/alz.069370 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Phosphorylation of tau within dystrophic neurites subsequently contributes to the formation of neuritic plaques during AD progression.

    “In the context of AD or aging, the formation of filamentous plaques has been associated with the phosphorylation of tau within dystrophic neuritis [13, 53, 106], which subsequently contributes to the formation of neuritic plaques (a subset of Aβ plaques surrounded by and containing dystrophic neurites) during AD progression”
    Quote in the paperNot a substantial claim3 of 3 sources checked
    • cites [13] Chen Y, Zhao S, Fan Z, Li Z, Zhu Y, Shen T et al (2021) Metformin attenuates plaque-associated tau pathology and reduces amyloid-β burden in APP/PS1 mice. Alzheimers Res Ther 13:40. https://doi.org/10.1186/s13195-020-00761-9 source

      The Results report phosphorylated tau particles surrounding Aβ plaques in APP/PS1 mice, supporting the association between tau pathology and plaques. The Discussion instead proposes that existing Aβ plaques induce tau accumulation in surrounding dystrophic neurites; it does not establish that tau phosphorylation forms neuritic plaques during AD progression. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
    • cites [53] Li T, Braunstein KE, Zhang J, Lau A, Sibener L, Deeble C et al (2016) The neuritic plaque facilitates pathological conversion of tau in an Alzheimer’s disease mouse model. Nat Commun 7:12082. https://doi.org/10.1038/ncomms12082 source

      The Results section (‘Neuritic plaque is not sufficient for the conversion of tau’) reports that tau was not hyperphosphorylated before neuritic plaques formed. Although the paper confirms phosphorylated tau within dystrophic neurites around plaques, its Discussion proposes the opposite sequence: Aβ-dependent plaque formation provides the environment for tau modification, not that tau phosphorylation subsequently forms the plaques. (LLM, conf=0.90)

      Checked by a reasoning model — may be wrong.

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    • cites [106] Yuan P, Condello C, Keene CD, Wang Y, Bird TD, Paul SM et al (2016) TREM2 haplodeficiency in mice and humans impairs the microglia barrier function leading to decreased amyloid compaction and severe axonal dystrophy. Neuron 90:724–739. https://doi.org/10.1016/j.neuron.2016.05.003 source

      The Results section on tau hyperphosphorylation (page unavailable) reports phospho-tau labeling in dystrophic neurites around filamentous and compact amyloid deposits. It does not show that tau phosphorylation contributes to plaque formation; the Discussion instead describes filamentous plaques as causing axonal dystrophy. (LLM, conf=0.85)

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  • Classified as probably not a substantial claim.

    Premisecitation

    Aβ plaques and neurofibrillary tau tangles are causally related to the cognitive manifestations of Alzheimer's disease.

    “Beta-amyloid (Aβ) plaques and neurofibrillary tau tangles (NFTs) have long been known to be causally related to the cognitive manifestations of Alzheimer’s disease (AD) [19].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [19] DeTure MA, Dickson DW (2019) The neuropathological diagnosis of Alzheimer’s disease. Mol Neurodegener 14:32. https://doi.org/10.1186/s13024-019-0333-5 source

      In Background, ‘Pathology of Alzheimer’s disease’ (page not supplied), the review says these lesions lead to neuronal and synaptic loss and AD symptoms. But ‘Neuritic plaques’ calls Aβ-driven cognitive decline a hypothesis, while ‘Distribution of neurofibrillary tangles’ says the relationship between tangles and cell death is not understood. The claim overstates that qualified account as a long-established causal relationship for both lesions. (LLM, conf=0.87)

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    Premisecitation

    The area surrounding NFTs in the hippocampus of AsymAD cases exhibits lower levels of proteins associated with inflammation, oxidative stress, and high energy demands than the hippocampus of AD cases.

    “one study showed that the area surrounding NFTs in the hippocampus of AsymAD cases exhibits lower levels of proteins associated with inflammation, oxidative stress, and high energy demands than those in AD cases’ hippocampus [100].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [100] Walker JM, Kazempour Dehkordi S, Fracassi A, Vanschoiack A, Pavenko A, Taglialatela G et al (2022) Differential protein expression in the hippocampi of resilient individuals identified by digital spatial profiling. Acta Neuropathol Commun 10:23. https://doi.org/10.1186/s40478-022-01324-9 source
  • Classified as probably not a substantial claim.

    Premisecitation

    Aβ plaques create an environment that facilitates the rapid amplification of proteopathic tau seeds into large tau aggregates.

    “Previous studies have demonstrated that Aβ plaques create a unique environment that facilitates the rapid amplification of proteopathic tau seeds into large tau aggregates, which initially appear in dystrophic neurites surrounding Aβ plaques (NP-tau), followed by the formation and spread of tau aggregates [34].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [34] He Z, Guo JL, McBride JD, Narasimhan S, Kim H, Changolkar L et al (2018) Amyloid-β plaques enhance Alzheimer’s brain tau-seeded pathologies by facilitating neuritic plaque tau aggregation. Nat Med 24:29–38. https://doi.org/10.1038/nm.4443 source
  • Classified as probably not a substantial claim.

    Premisecitation

    Tau aggregates initially appear in dystrophic neurites surrounding Aβ plaques (NP-tau) and subsequently spread.

    “Previous studies have demonstrated that Aβ plaques create a unique environment that facilitates the rapid amplification of proteopathic tau seeds into large tau aggregates, which initially appear in dystrophic neurites surrounding Aβ plaques (NP-tau), followed by the formation and spread of tau aggregates [34].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [34] He Z, Guo JL, McBride JD, Narasimhan S, Kim H, Changolkar L et al (2018) Amyloid-β plaques enhance Alzheimer’s brain tau-seeded pathologies by facilitating neuritic plaque tau aggregation. Nat Med 24:29–38. https://doi.org/10.1038/nm.4443 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Microglial and astrocytic interactions with Aβ amyloid plaques are associated with amyloid plaque development and neuritic damage.

    “Microglial and astrocytic interactions with Aβ amyloid plaques have been associated with amyloid plaque development and neuritic damage [81].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [81] Serrano-Pozo A, Muzikansky A, Gómez-Isla T, Growdon JH, Betensky RA, Frosch MP et al (2013) Differential relationships of reactive astrocytes and microglia to fibrillar amyloid deposits in Alzheimer disease. J Neuropathol Exp Neurol 72:462–471. https://doi.org/10.1097/NEN.0b013e3182933788 source

      The Abstract (page not available) reports that both cell types are spatially associated with plaques, but only the microglial response increases with plaque size. The Discussion sections on microglial and astrocytic responses link microglia tentatively to plaque-size stabilization and astrocytes to plaque-associated neuritic damage. The study does not establish an association between both glial interactions and plaque development over time. (LLM, conf=0.82)

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    Premisecitation

    Tau oligomers form prior to and independent of NFTs.

    “Several groups have demonstrated that tau oligomers, which form prior to and independent of NFTs, are the toxic agents responsible for synaptic dysfunction in AD and drive cognitive decline [26, 49, 50, 58, 95].”
    Quote in the paperNot a substantial claim3 of 5 sources checked
    • cites [26] Fox LM, William CM, Adamowicz DH, Pitstick R, Carlson GA, Spires-Jones TL et al (2011) Soluble tau species, not neurofibrillary aggregates, disrupt neural system integration in a tau transgenic model. J Neuropathol Exp Neurol 70:588–595. https://doi.org/10.1097/NEN.0b013e318220a658 source

      The Discussion reports that reducing a soluble tau species improved Arc responses despite persistent neurofibrillary pathology. It does not identify that species as tau oligomers or say when oligomers form relative to NFTs; searches for tau oligomers and formation before tangles found no such passage in our copy. (LLM, conf=0.76)

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    • cites [49] Lasagna-Reeves CA, Castillo-Carranza DL, Guerrero-Muñoz MJ, Jackson GR, Kayed R (2010) Preparation and characterization of neurotoxic tau oligomers. Biochemistry 49:10039–10041. https://doi.org/10.1021/bi1016233 source
    • cites [50] Lasagna-Reeves CA, Castillo-Carranza DL, Sengupta U, Guerrero-Munoz MJ, Kiritoshi T, Neugebauer V et al (2012) Alzheimer brain-derived tau oligomers propagate pathology from endogenous tau. Sci Rep 2:700. https://doi.org/10.1038/srep00700 source

      The Results (Brain-derived tau oligomers seeding and toxicity in vitro) report oligomers forming before detectable fibrils, and the isolation results describe brain-derived oligomers without paired helical filament contamination. These findings support oligomers as distinct from fibrillar tau, but do not establish that they form prior to NFTs in AD brains or independently of NFT formation in vivo. (LLM, conf=0.82)

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    • cites [58] Maeda S, Sahara N, Saito Y, Murayama S, Ikai A, Takashima A (2006) Increased levels of granular tau oligomers: an early sign of brain aging and Alzheimer’s disease. Neurosci Res 54:197–201. https://doi.org/10.1016/j.neures.2005.11.009 source
    • cites [95] Tian H, Davidowitz E, Lopez P, Emadi S, Moe J, Sierks M (2013) Trimeric tau is toxic to human neuronal cells at low nanomolar concentrations. Int J Cell Biol 2013:1–9. https://doi.org/10.1155/2013/260787 source

      The Introduction (page unavailable) says oligomeric tau appears in early AD cytopathology and that synaptic dysfunction can occur before NFTs. It does not establish that tau oligomers themselves form before NFTs or that their formation is independent of NFTs. (LLM, conf=0.82)

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    Premisecitation

    Elevated gene expression related to the early stages of autophagy is responsible for maintaining synaptic integrity through the efficient removal of tau oligomers in the hippocampus of AsymAD subjects.

    “These findings align with a recent study in which elevated gene expression related to the early stages of autophagy was demonstrated to be responsible for maintaining synaptic integrity through the efficient removal of tau oligomers in the hippocampus of AsymAD subjects [98].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [98] Tumurbaatar B, Fracassi A, Scaduto P, Guptarak J, Woltjer R, Jupiter D et al (2023) Preserved autophagy in cognitively intact non-demented individuals with Alzheimer’s neuropathology. Alzheimers Dement. https://doi.org/10.1002/alz.13074 source

      Section 3.2 (page unavailable) reports higher levels of early-autophagy proteins in NDAN hippocampi than in AD hippocampi. Section 3.4 reports a negative correlation between autophagy proteins and tau oligomers, while the Discussion proposes tau clearance as a protective mechanism. These findings do not demonstrate that elevated gene expression causes efficient tau-oligomer removal or thereby maintains synaptic integrity. (LLM, conf=0.88)

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    Premisecitation

    Filamentous plaques are neurotoxic whereas compact dense-core plaques are relatively benign.

    “Interestingly, it was previously reported that filamentous plaques are neurotoxic whereas compact dense-core plaques are relatively benign [38, 52].”
    Quote in the paperSubstantial claim2 of 2 sources checked
    • cites [38] Huang Y, Happonen KE, Burrola PG, O’Connor C, Hah N, Huang L et al (2021) Microglia use TAM receptors to detect and engulf amyloid β plaques. Nat Immunol 22:586–594. https://doi.org/10.1038/s41590-021-00913-5 source

      The Results section reports that markers of dystrophic neuronal membranes increased mainly around diffuse plaques, but also around dense-core plaques. The Discussion proposes that dense-core plaques may confine toxic Aβ oligomers; it does not establish that filamentous plaques are neurotoxic while compact plaques are relatively benign. No page numbers are available in our copy. (LLM, conf=0.84)

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    • cites [52] Lemke G, Huang Y (2022) The dense-core plaques of Alzheimer’s disease are granulomas. J Exp Med 219:e20212477. https://doi.org/10.1084/jem.20212477 source

      The Introduction says Aβ oligomers and proto-fibrils that form diffuse plaques are mostly neurotoxic in vitro; it does not call those plaques “filamentous.” In “Implications of the granuloma hypothesis,” the authors suggest dense-core plaques may be less damaging than dispersed oligomers and proto-fibrils, but explicitly say the plaques are not beneficial. The claim turns that qualified comparison into a categorical statement that dense-core plaques are relatively benign. (LLM, conf=0.88)

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    Premisecitation

    In the context of AD or aging, the formation of filamentous plaques has been associated with the phosphorylation of tau within dystrophic neurites.

    “In the context of AD or aging, the formation of filamentous plaques has been associated with the phosphorylation of tau within dystrophic neuritis [13, 53, 106], which subsequently contributes to the formation of neuritic plaques (a subset of Aβ plaques surrounded by and containing dystrophic neurites) during AD progression”
    Quote in the paperNot a substantial claim3 of 3 sources checked
    • cites [13] Chen Y, Zhao S, Fan Z, Li Z, Zhu Y, Shen T et al (2021) Metformin attenuates plaque-associated tau pathology and reduces amyloid-β burden in APP/PS1 mice. Alzheimers Res Ther 13:40. https://doi.org/10.1186/s13195-020-00761-9 source

      The Discussion (page unavailable) reports tau aggregation in dystrophic neurites surrounding Aβ plaques, and the Introduction reports enhanced tau phosphorylation in a mouse model with amyloid pathology. The paper does not establish that filamentous plaques form in association with this phosphorylation, nor does it extend that finding to aging generally. (LLM, conf=0.83)

      Experimental — accuracy not yet measured
    • cites [53] Li T, Braunstein KE, Zhang J, Lau A, Sibener L, Deeble C et al (2016) The neuritic plaque facilitates pathological conversion of tau in an Alzheimer’s disease mouse model. Nat Commun 7:12082. https://doi.org/10.1038/ncomms12082 source

      The Results section (‘Neuritic plaque is not sufficient for the conversion of tau’; page unavailable) reports that neuritic plaques in aging AD-model mice were associated with tau hyperphosphorylation within dystrophic neurites, and that phosphorylation was not observed before plaque formation. It does not identify these as ‘filamentous plaques’ or establish the association across AD or aging generally. (LLM, conf=0.82)

      Experimental — accuracy not yet measured
    • cites [106] Yuan P, Condello C, Keene CD, Wang Y, Bird TD, Paul SM et al (2016) TREM2 haplodeficiency in mice and humans impairs the microglia barrier function leading to decreased amyloid compaction and severe axonal dystrophy. Neuron 90:724–739. https://doi.org/10.1016/j.neuron.2016.05.003 source

      The Results section on tau hyperphosphorylation and axonal dystrophy reports phosphotau-positive dystrophic neurites around filamentous amyloid plaques in human AD brains. This supports the association in AD, but the paper does not establish it in aging apart from AD. (LLM, conf=0.83)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Microglia appear crucial to the initial appearance and structure of plaques and, following plaque formation, promote a chronic inflammatory state modulating neuronal gene expression changes in response to Aβ during AD pathology.

    “In this context, microglia appear crucial to the initial appearance and structure of plaques and, following plaque formation, promote a chronic inflammatory state modulating neuronal gene expression changes in response to Aβ during AD pathology [84].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [84] Spangenberg E, Severson PL, Hohsfield LA, Crapser J, Zhang J, Burton EA et al (2019) Sustained microglial depletion with CSF1R inhibitor impairs parenchymal plaque development in an Alzheimer’s disease model. Nat Commun 10:3758. https://doi.org/10.1038/s41467-019-11674-z source
  • Classified as probably not a substantial claim. May combine two claims.

    Premisecitation

    Tau oligomers are the toxic agents responsible for synaptic dysfunction in AD and drive cognitive decline.

    “Several groups have demonstrated that tau oligomers, which form prior to and independent of NFTs, are the toxic agents responsible for synaptic dysfunction in AD and drive cognitive decline [26, 49, 50, 58, 95].”
    Quote in the paperSubstantial claim3 of 5 sources checked
    • cites [26] Fox LM, William CM, Adamowicz DH, Pitstick R, Carlson GA, Spires-Jones TL et al (2011) Soluble tau species, not neurofibrillary aggregates, disrupt neural system integration in a tau transgenic model. J Neuropathol Exp Neurol 70:588–595. https://doi.org/10.1097/NEN.0b013e318220a658 source

      The Discussion (page not provided) reports that suppressing soluble tau expression rescued impaired hippocampal circuitry in a tau-transgenic mouse model despite persistent neurofibrillary pathology. The Introduction links soluble tau to memory impairment in those mice, but the paper does not identify tau oligomers as the toxic species or demonstrate that they cause synaptic dysfunction and cognitive decline in people with Alzheimer disease. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [49] Lasagna-Reeves CA, Castillo-Carranza DL, Guerrero-Muñoz MJ, Jackson GR, Kayed R (2010) Preparation and characterization of neurotoxic tau oligomers. Biochemistry 49:10039–10041. https://doi.org/10.1021/bi1016233 source
    • cites [50] Lasagna-Reeves CA, Castillo-Carranza DL, Sengupta U, Guerrero-Munoz MJ, Kiritoshi T, Neugebauer V et al (2012) Alzheimer brain-derived tau oligomers propagate pathology from endogenous tau. Sci Rep 2:700. https://doi.org/10.1038/srep00700 source

      The Results sections on hippocampal long-term potentiation and pathological effects in vivo report impaired synaptic plasticity in brain slices and disrupted memory in mice after exposure to tau oligomers isolated from AD brains. These experiments support the proposed toxicity, but they do not establish that tau oligomers are the agents responsible for synaptic dysfunction or that they drive cognitive decline in people with AD. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [58] Maeda S, Sahara N, Saito Y, Murayama S, Ikai A, Takashima A (2006) Increased levels of granular tau oligomers: an early sign of brain aging and Alzheimer’s disease. Neurosci Res 54:197–201. https://doi.org/10.1016/j.neures.2005.11.009 source
    • cites [95] Tian H, Davidowitz E, Lopez P, Emadi S, Moe J, Sierks M (2013) Trimeric tau is toxic to human neuronal cells at low nanomolar concentrations. Int J Cell Biol 2013:1–9. https://doi.org/10.1155/2013/260787 source

      The Introduction reports that oligomeric tau induces synaptic dysfunction and that its levels correlate with memory loss in mice. It also describes oligomeric tau as implicated in AD progression, but does not establish that it is *the* agent responsible for synaptic dysfunction or that it drives cognitive decline in people with AD. The claim states those causal conclusions more firmly than the source does. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim.

    Premisecitation

    HMW tau-containing particles are one of the predominant toxic entities.

    “Our laboratory has recently demonstrated that the primary source of tau seeding activity in AD cases, corresponds to soluble high molecular weight (HMW) tau species; thus, HMW tau-containing particles are one of the predominant toxic entities [60].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [60] Martinez P, Patel H, You Y, Jury N, Perkins A, Lee-Gosselin A et al (2022) Bassoon contributes to tau-seed propagation and neurotoxicity. Nat Neurosci 25:1597–1607. https://doi.org/10.1038/s41593-022-01191-6 source

      The Results section ‘BSN is associated with tau pathology in human tauopathy brain tissue’ (page unavailable) identifies the HMW fraction as having the strongest tau-seeding activity in AD patient brains. It does not establish that HMW tau-containing particles are predominant toxic entities; seeding activity alone does not demonstrate that ranking of toxicity. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim. May combine two claims.

    Premisecitation

    Highly phosphorylated tau species in dystrophic neurites surrounding Aβ plaques (NP-Tau) aggregate faster and spread more widely than tau in NFTs.

    “These highly phosphorylated tau species in dystrophic neurites surrounding Aβ plaques (NP-Tau) aggregate faster and spread more widely than tau in NFTs [34].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [34] He Z, Guo JL, McBride JD, Narasimhan S, Kim H, Changolkar L et al (2018) Amyloid-β plaques enhance Alzheimer’s brain tau-seeded pathologies by facilitating neuritic plaque tau aggregation. Nat Med 24:29–38. https://doi.org/10.1038/nm.4443 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Phagocytosis and endocytosis might underlie synaptic resilience in AsymAD individuals.

    “previous evidence suggest that phagocytosis and endocytosis might underlie synaptic resilience in AsymAD individuals [92, 98].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [92] Tesi N, Van Der Lee SJ, Hulsman M, Jansen IE, Stringa N, Van Schoor NM et al (2020) Immune response and endocytosis pathways are associated with the resilience against Alzheimer’s disease. Transl Psychiatry 10:332. https://doi.org/10.1038/s41398-020-01018-7 source

      The Discussion links immune response and endocytosis to escaping AD and suggests that dysregulation of these pathways may favor synapse engulfment. But the study examines cognitively healthy centenarians, not AsymAD individuals, and does not establish phagocytosis and endocytosis as mechanisms of synaptic resilience in that group. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [98] Tumurbaatar B, Fracassi A, Scaduto P, Guptarak J, Woltjer R, Jupiter D et al (2023) Preserved autophagy in cognitively intact non-demented individuals with Alzheimer’s neuropathology. Alzheimers Dement. https://doi.org/10.1002/alz.13074 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Genetic variants linked to autophagy processes may contribute to resistance against amyloid plaques and NFTs in centenarians.

    “Furthermore, genetic variants linked to autophagy processes may contribute to resistance against amyloid plaques and NFTs in centenarians [107]”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [107] Zhang M, Ganz AB, Rohde S, Rozemuller AJM, Bank NB, Reinders MJT et al (2022) Resilience and resistance to the accumulation of amyloid plaques and neurofibrillary tangles in centenarians: an age-continuous perspective. Alzheimers Dement. https://doi.org/10.1002/alz.12899 source
  • May combine two claims.

    Premisecitation

    Microglia limit diffuse plaques by constructing and maintaining dense compact-like plaque properties in AD mouse models and humans, thereby blocking the progression of neuritic dystrophy and reducing tau phosphorylation in the local plaque environment.

    “Furthermore, microglia limit diffuse plaques by constructing and maintaining dense compact-like plaque properties in AD mouse models and humans, thereby blocking the progression of neuritic dystrophy and reducing tau phosphorylation in the local plaque environment [12, 38, 106].”
    Quote in the paperSubstantial claim3 of 3 sources checked
    • cites [12] Casali BT, MacPherson KP, Reed-Geaghan EG, Landreth GE (2020) Microglia depletion rapidly and reversibly alters amyloid pathology by modification of plaque compaction and morphologies. Neurobiol Dis 142:104956. https://doi.org/10.1016/j.nbd.2020.104956 source

      Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
    • cites [38] Huang Y, Happonen KE, Burrola PG, O’Connor C, Hah N, Huang L et al (2021) Microglia use TAM receptors to detect and engulf amyloid β plaques. Nat Immunol 22:586–594. https://doi.org/10.1038/s41590-021-00913-5 source

      Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
    • cites [106] Yuan P, Condello C, Keene CD, Wang Y, Bird TD, Paul SM et al (2016) TREM2 haplodeficiency in mice and humans impairs the microglia barrier function leading to decreased amyloid compaction and severe axonal dystrophy. Neuron 90:724–739. https://doi.org/10.1016/j.neuron.2016.05.003 source

      Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
  • May combine two claims.

    Findingcitation

    In AD cases, the tau species with the strongest seeding activity is a HMW tau in fraction 9 (> 2000 kDa), representing a small percentage of total tau in the brain.

    “As we previously reported [60], the tau species with the strongest seeding activity in AD cases was a HMW tau in fraction 9 (> 2000 kDa) (Fig. 2e), representing a small percentage of the total tau in the brain (Fig. 2f).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [60] Martinez P, Patel H, You Y, Jury N, Perkins A, Lee-Gosselin A et al (2022) Bassoon contributes to tau-seed propagation and neurotoxicity. Nat Neurosci 25:1597–1607. https://doi.org/10.1038/s41593-022-01191-6 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    The literature highlights the crucial involvement of ACTR2 and CFL1 in microglial motility.

    “the literature also highlights their crucial involvement in microglial motility [18, 20].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [18] Desale SE, Chinnathambi S (2021) Phosphoinositides signaling modulates microglial actin remodeling and phagocytosis in Alzheimer’s disease. Cell Commun Signal 19:28. https://doi.org/10.1186/s12964-021-00715-0 source

      The Background section, “Phosphatidylinositol signaling in microglial migration” (page unavailable), links ARP2/3-mediated actin polymerization to microglial migration, supporting the ACTR2 aspect at the complex level. It does not identify ACTR2 individually or establish a role for CFL1 in microglial motility; searches for CFL1 and cofilin found no such passage. (LLM, conf=0.83)

      Experimental — accuracy not yet measured
    • cites [20] Drew J, Arancibia-Carcamo IL, Jolivet R, Lopez-Domenech G, Attwell D, Kittler JT (2020) Control of microglial dynamics by Arp2/3 and the autism and schizophrenia-associated protein Cyfip1. Neuroscience source

      In ‘Inhibition of Arp2/3 and Rac1 leads to defects in surveillance of brain parenchyma’ (page unavailable), Arp2/3 inhibition reduced microglial surveillance by over 50%, supporting the motility point for the Arp2/3 complex. The paper does not establish a specific role for ACTR2 separately or address CFL1/cofilin; it also reports that chemotaxis was unaffected by Arp2/3 inhibition. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    This tau propagation could occur through axonal transmission to the neuronal soma and dendrites, ultimately leading to NFT formation.

    “This tau propagation could occur through axonal transmission to the neuronal soma and dendrites, ultimately leading to NFT formation [34].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [34] He Z, Guo JL, McBride JD, Narasimhan S, Kim H, Changolkar L et al (2018) Amyloid-β plaques enhance Alzheimer’s brain tau-seeded pathologies by facilitating neuritic plaque tau aggregation. Nat Med 24:29–38. https://doi.org/10.1038/nm.4443 source

      The Results section proposes that tau induced in dystrophic axons is transported retrogradely to neuronal somas, where it seeds NFT formation; the Discussion likewise suggests that neuritic-plaque tau may trigger NFTs in connected somas. Our copy does not specify transmission to dendrites, so that part of the claim is unsupported. No page number is available in the indexed passages. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Aβ plaques create a unique environment that triggers tau phosphorylation within dystrophic neuritis in a mouse model of amyloidosis.

    “In a mouse model of amyloidosis, it has been observed that Aβ plaques create a unique environment that triggers tau phosphorylation within dystrophic neuritis [53].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [53] Li T, Braunstein KE, Zhang J, Lau A, Sibener L, Deeble C et al (2016) The neuritic plaque facilitates pathological conversion of tau in an Alzheimer’s disease mouse model. Nat Commun 7:12082. https://doi.org/10.1038/ncomms12082 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    CAP1 plays a role in facilitating the release of CFL1 from ADP-actin filaments.

    “CAP1 plays a role in facilitating the release of CFL1 from ADP-actin filaments [29].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [29] Franco-Bocanegra McAuley, Nicoll B (2019) Molecular mechanisms of microglial motility: changes in ageing and Alzheimer’s disease. Cells 8:639. https://doi.org/10.3390/cells8060639 source

      Section 3 (page unavailable) links CAP1 to CFL1 up-regulation during actin remodeling, supporting a role for CAP1 in CFL1 regulation. It does not say that CAP1 facilitates CFL1 release from ADP-actin filaments; searches for that mechanism found no such passage. (LLM, conf=0.78)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    Reactive astrocytes and activated microglia respond differently to Aβ plaque formation; while microglia respond directly to the presence of plaques, astrocytes are associated with neuritic damage that occurs when synapses are already dysfunctional.

    “One study showed that reactive astrocytes and activated microglia respond differently to Aβ plaque formation; while microglia respond directly to the presence of plaques, astrocytes are associated with neuritic damage that occurs when synapses are already dysfunctional [81].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [81] Serrano-Pozo A, Muzikansky A, Gómez-Isla T, Growdon JH, Betensky RA, Frosch MP et al (2013) Differential relationships of reactive astrocytes and microglia to fibrillar amyloid deposits in Alzheimer disease. J Neuropathol Exp Neurol 72:462–471. https://doi.org/10.1097/NEN.0b013e3182933788 source

      Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Actin network proteins in neurons play a crucial role in conferring resilience to AD.

    “Interestingly, a recent study that used mass spectrometry-based proteomics has pointed out the crucial role of actin network proteins in neurons to confer resilience to AD [39].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [39] Huang Z, Merrihew GE, Larson EB, Park J, Plubell D, Fox EJ et al (2023) Brain proteomic analysis implicates actin filament processes and injury response in resilience to Alzheimer’s disease. Nat Commun 14:2747. https://doi.org/10.1038/s41467-023-38376-x source

      The Results and Discussion associate actin filament processes with resilience to Alzheimer’s disease and relate actin dynamics to dendrite and synapse remodeling. But the Discussion says future studies must determine whether modulating these processes is necessary for resilience; the study does not establish that neuronal actin proteins confer it or play a crucial causal role. Page numbers are unavailable in our copy. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    In regions lacking microglial processes, neuritic dystrophy is more severe, and these protective mechanisms are reduced during aging.

    “Moreover, in regions lacking microglial processes, neuritic dystrophy is more severe, and these protective mechanisms are reduced during aging [15].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [15] Condello C, Yuan P, Schain A, Grutzendler J (2015) Microglia constitute a barrier that prevents neurotoxic protofibrillar Aβ42 hotspots around plaques. Nat Commun 6:6176. https://doi.org/10.1038/ncomms7176 source
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Autophagy and microglial phagocytosis are impaired in AD and aged brains.

    “Extensive evidence shows that autophagy and microglial phagocytosis are impaired in AD and aged brains [24, 30, 94, 103].”
    Quote in the paperNot a substantial claim3 of 4 sources checked
    • cites [24] Filippone A, Esposito E, Mannino D, Lyssenko N, Praticò D (2022) The contribution of altered neuronal autophagy to neurodegeneration. Pharmacol Ther 238:108178. https://doi.org/10.1016/j.pharmthera.2022.108178 source

      The section on neuronal autophagy dysfunction in Alzheimer’s and Parkinson’s diseases reports impaired autophagy in people with AD, supporting that part of the claim. The Introduction discusses microglial activation, not impaired microglial phagocytosis; the retrieved passages also do not establish impairment of both processes in aged brains. Page numbers are unavailable in our copy. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [30] Gabandé-Rodríguez E, Keane L, Capasso M (2020) Microglial phagocytosis in aging and Alzheimer’s disease. J Neurosci Res 98:284–298. https://doi.org/10.1002/jnr.24419 source
    • cites [94] Thomas AL, Lehn MA, Janssen EM, Hildeman DA, Chougnet CA (2022) Naturally-aged microglia exhibit phagocytic dysfunction accompanied by gene expression changes reflective of underlying neurologic disease. Sci Rep 12:19471. https://doi.org/10.1038/s41598-022-21920-y source

      The Introduction links microglial phagocytic deficiencies to Alzheimer’s disease progression, and the Results and discussion (‘Loss of phagocytic capacity in microglia from aged mice’; page unavailable) report reduced Aβ uptake by microglia from aged mice. The paper does not report impaired autophagy in AD or aged brains; a search for ‘autophagy’ found the term only in a reference title. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [103] Wang Z, Wang Q, Li S, Li X-J, Yang W, He D (2023) Microglial autophagy in Alzheimer’s disease and Parkinson’s disease. Front Aging Neurosci 14:1065183. https://doi.org/10.3389/fnagi.2022.1065183 source
  • May combine two claims.

    Premisecitation

    Reactive microglia encircle amyloid plaques and sequester Aβ amyloid within their cytoplasm in vitro.

    “Initial observations revealed that reactive microglia encircle amyloid plaques and sequester Aβ amyloid within their cytoplasm in vitro [48, 104].”
    Quote in the paperNot a substantial claim1 of 2 sources checked
    • cites [48] Koenigsknecht-Talboo J, Landreth GE (2005) Microglial phagocytosis induced by fibrillar β-amyloid and IgGs are differentially regulated by proinflammatory cytokines. J Neurosci 25:8240–8249. https://doi.org/10.1523/JNEUROSCI.1808-05.2005 source

      The Introduction (page unavailable) says activated microglia surround plaques in the Alzheimer’s disease brain. It does not place that observation in vitro; moreover, the Phagocytosis assay section (page unavailable) measures uptake of fluorescent microspheres after Aβ stimulation, not sequestration of Aβ within microglial cytoplasm. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [104] Webster SD, Yang AJ, Margol L, Garzon-Rodriguez W, Glabe CG, Tenner AJ (2000) Complement component C1q modulates the phagocytosis of Aβ by microglia. Exp Neurol 161:127–138. https://doi.org/10.1006/exnr.1999.7260 source
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    In human brains, CFL1 is expressed across various cell types, including astrocytes, neurons, and microglia, while ACTR2 is predominately expressed in microglia and macrophages.

    “Indeed, in human brains, CFL1 is expressed across various cell types, including astrocytes, neurons, and microglia, while ACTR2 is predominately expressed in microglia and macrophages [108].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [108] Zhang Y, Sloan SA, Clarke LE, Caneda C, Plaza CA, Blumenthal PD et al (2016) Purification and characterization of progenitor and mature human astrocytes reveals transcriptional and functional differences with mouse. Neuron 89:37–53. https://doi.org/10.1016/j.neuron.2015.11.013 source

      The Results section on acutely purified human brain cell transcriptomes describes expression profiles for these cell types, but does not report CFL1 or ACTR2 expression. Searches for both gene names and their proposed cell-type patterns found no passage in our copy that verifies the claim; no page numbers are available. (LLM, conf=0.72)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    Pharmacological depletion of microglia in ten-month-old 5xFAD mice reduced the plaque burden, and the remaining plaques exhibited increased diffuse-like plaques and fewer compact-like shapes, together with increased dystrophic neuritis.

    “Casali et al. showed that pharmacological depletion of microglia in ten-month-old 5xFAD mice reduced the plaque burden, and the remaining plaques exhibited increased diffuse-like plaques and fewer compact-like shapes, together with increased dystrophic neuritis [12].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [12] Casali BT, MacPherson KP, Reed-Geaghan EG, Landreth GE (2020) Microglia depletion rapidly and reversibly alters amyloid pathology by modification of plaque compaction and morphologies. Neurobiol Dis 142:104956. https://doi.org/10.1016/j.nbd.2020.104956 source

      The Abstract reports reduced plaque burden, more diffuse-like and fewer compact-like plaques, and enhanced neuritic dystrophy after microglial depletion. But the Results state that Casali et al. treated 5xFAD mice at four months of age, not ten months. The Discussion contrasts their findings with a different study of ten-month-old mice that did not observe a plaque-burden change. Page numbers are not provided in our copy. (LLM, conf=0.91)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    In addition to NFT deposition, there is a notable increase in tau oligomer-containing synapses within microglia and astrocytes during the early stages of AD but not in AsymAD cases.

    “Moreover, a recent study demonstrated that in addition to NFT deposition, there is a notable increase in tau oligomer-containing synapses within microglia and astrocytes during the early stages of AD but not in AsymAD cases [89].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [89] Taddei RN, Perbet R, Mate De Gerando A, Wiedmer AE, Sanchez-Mico M, Connors Stewart T et al (2023) Tau oligomer-containing synapse elimination by microglia and astrocytes in Alzheimer disease. JAMA Neurol 80:1209. https://doi.org/10.1001/jamaneurol.2023.3530 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    When human AD-derived tau was injected into a plaque-bearing 5xFAD mouse model, Aβ plaques facilitated the conversion and seeding of pathological tau in dystrophic neurites during the early stages of pathology.

    “Furthermore, He et al. reported that when human AD-derived tau was injected into a plaque-bearing 5xFAD mouse model, Aβ plaques facilitated the conversion and seeding of pathological tau in dystrophic neurites during the early stages of pathology.”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [34] He Z, Guo JL, McBride JD, Narasimhan S, Kim H, Changolkar L et al (2018) Amyloid-β plaques enhance Alzheimer’s brain tau-seeded pathologies by facilitating neuritic plaque tau aggregation. Nat Med 24:29–38. https://doi.org/10.1038/nm.4443 source
  • May combine two claims.

    Premisecitation

    Genetic ablation of tyrosine kinase TAM receptors inhibited microglial phagocytosis and decreased dense-core plaque density in the cortex and hippocampus after 12 months of age; these changes were not due to any changes in the production of Aβ peptides.

    “Using the APP/PS1 AD mouse model, Huang et al. showed that genetic ablation of tyrosine kinase TAM receptors inhibited microglial phagocytosis and decreased dense-core plaque density in the cortex and hippocampus after 12 months of age; these changes were not due to any changes in the production of Aβ peptides [38].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [38] Huang Y, Happonen KE, Burrola PG, O’Connor C, Hah N, Huang L et al (2021) Microglia use TAM receptors to detect and engulf amyloid β plaques. Nat Immunol 22:586–594. https://doi.org/10.1038/s41590-021-00913-5 source

      Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim.

    Premisecitation

    The ACTR2 (encoding ARP2) and CFL1 (Cofilin 1) genes play significant roles in actin remodeling, enabling both baseline movement (ruffling or branching) and chemotactic motility (migration).

    “The ACTR2 (encoding ARP2) and CFL1 (Cofilin 1) genes play significant roles in actin remodeling, enabling both baseline movement (ruffling or branching) and chemotactic motility (migration) [18, 28, 29].”
    Quote in the paperSubstantial claim3 of 3 sources checked
    • cites [18] Desale SE, Chinnathambi S (2021) Phosphoinositides signaling modulates microglial actin remodeling and phagocytosis in Alzheimer’s disease. Cell Commun Signal 19:28. https://doi.org/10.1186/s12964-021-00715-0 source

      The Background sections on phosphatidylinositol signaling in microglial migration and actin remodeling (pages unavailable) link ARP2/3-mediated actin polymerization to membrane ruffling and migration toward chemoattractants. The passages do not identify ACTR2 or describe a role for CFL1/cofilin 1 in those processes, so they support only the ARP2/3 portion of the claim. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
    • cites [28] Franco-Bocanegra DK, George B, Lau LC, Holmes C, Nicoll JAR, Boche D (2019) Microglial motility in Alzheimer’s disease and after Aβ42 immunotherapy: a human post-mortem study. Acta Neuropathol Commun 7:174. https://doi.org/10.1186/s40478-019-0828-x source

      The Introduction describes CFL1 as an actin-binding protein, links Arp2/3 to actin branching, and says actin reorganisation is essential to both baseline and directed microglial motility. It does not identify ACTR2 as the gene encoding ARP2 or establish a specific role for ACTR2 in those forms of movement; the Discussion says the Arp2/3 complex was not evaluated in this study. Page numbers are unavailable in our copy. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
    • cites [29] Franco-Bocanegra McAuley, Nicoll B (2019) Molecular mechanisms of microglial motility: changes in ageing and Alzheimer’s disease. Cells 8:639. https://doi.org/10.3390/cells8060639 source
  • May combine two claims.

    Premisecitation

    Exposure to ozone decreased the association of phagocytic microglia with amyloid plaques, impairing their ability to form a protective barrier and exacerbating dystrophic neuritis.

    “In another study, exposure to ozone decreased the association of phagocytic microglia with amyloid plaques, impairing their ability to form a protective barrier and exacerbating dystrophic neuritis [33].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [33] Greve HJ, Dunbar AL, Lombo CG, Ahmed C, Thang M, Messenger EJ et al (2023) The bidirectional lung brain-axis of amyloid-β pathology: ozone dysregulates the peri-plaque microenvironment. Brain 146:991–1005. https://doi.org/10.1093/brain/awac113 source
  • May combine two claims.

    Interpretationcitation

    The plaque microenvironment in AsymAD individuals does not facilitate the formation of soluble tau species with strong seeding activity, unlike in neurotoxic tau oligomers formation in AD brains.

    “Therefore, the evidence provided in the current study suggests that the plaque microenvironment in AsymAD individuals does not facilitate the formation of soluble tau species with strong seeding activity, unlike in neurotoxic tau oligomers formation in AD brains [60].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [60] Martinez P, Patel H, You Y, Jury N, Perkins A, Lee-Gosselin A et al (2022) Bassoon contributes to tau-seed propagation and neurotoxicity. Nat Neurosci 25:1597–1607. https://doi.org/10.1038/s41593-022-01191-6 source

      The Results section on human tauopathy brain tissue reports strong seeding activity in high-molecular-weight tau from AD brains, supporting the AD side of the contrast. It describes those seeds as predominantly twisted filaments, not oligomers, and does not examine plaque microenvironments in AsymAD individuals. The AsymAD inference is framed as the citing authors’ own finding rather than a result attributed to this source. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    In Trem2 or Dap12 haplodeficient mice and humans carrying the R47H mutation in the TREM2 gene, microglia demonstrate a markedly reduced ability to envelop amyloid deposits, decreasing compact plaque phenotypes and increasing amyloid fibril exposure to adjacent neurites, which is associated with tau hyperphosphorylation.

    “In Trem2 or Dap12 haplodeficient mice and humans carrying the R47H mutation in the TREM2 gene, the microglia demonstrate a markedly reduced ability to envelop amyloid deposits, decreasing compact plaque phenotypes and increasing amyloid fibril exposure to adjacent neurites, which is associated with tau hyperphosphorylation [102, 106].”
    Quote in the paperSubstantial claim2 of 2 sources checked
    • cites [102] Wang Y, Ulland TK, Ulrich JD, Song W, Tzaferis JA, Hole JT et al (2016) TREM2-mediated early microglial response limits diffusion and toxicity of amyloid plaques. J Exp Med 213:667–675. https://doi.org/10.1084/jem.20151948 source

      Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
    • cites [106] Yuan P, Condello C, Keene CD, Wang Y, Bird TD, Paul SM et al (2016) TREM2 haplodeficiency in mice and humans impairs the microglia barrier function leading to decreased amyloid compaction and severe axonal dystrophy. Neuron 90:724–739. https://doi.org/10.1016/j.neuron.2016.05.003 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    The absence of dementia in AsymAD individuals is partly due to synaptic preservation and, hence, neuron survival.

    “It is well established that the absence of dementia in AsymAD individuals is partly due to synaptic preservation and, hence, neuron survival [31, 67].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [31] Gómez-Isla T, Frosch MP (2022) Lesions without symptoms: understanding resilience to Alzheimer disease neuropathological changes. Nat Rev Neurol 18:323–332. https://doi.org/10.1038/s41582-022-00642-9 source

      In “Putative mechanisms of resilience > Neuronal and synaptic loss” (page not available), the review reports preserved synaptic markers and neuron numbers in people with AD pathology but no dementia. It says these findings favour identifying resilient brains by preservation of both neurons and synapses; it does not establish that synaptic preservation causes neuron survival, as the claim’s “hence” implies. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [67] Neuner SM, Telpoukhovskaia M, Menon V, O’Connell KMS, Hohman TJ, Kaczorowski CC (2022) Translational approaches to understanding resilience to Alzheimer’s disease. Trends Neurosci 45:369–383. https://doi.org/10.1016/j.tins.2022.02.005 source

      The “Features of resilient individuals” section reports preserved synaptic markers and neuron numbers in pathology-positive people without dementia, and the “Concluding remarks” identify maintained synapse structure as a contributor to resilience. The paper does not establish the claimed causal step that synaptic preservation leads to neuron survival; it reports the two forms of preservation together. Page numbers are unavailable in our copy. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductcitation

    Effects of ARP2 from other cell types cannot be ruled out.

    “therefore, we cannot rule out effects from other cell types [35, 85]”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [35] Heinze A, Schuldt C, Khudayberdiev S, Van Bommel B, Hacker D, Schulz TG et al (2022) Functional interdependence of the actin regulators CAP1 and cofilin1 in control of dendritic spine morphology. Cell Mol Life Sci 79:558. https://doi.org/10.1007/s00018-022-04593-8 source

      The Results section on CAP1 and dendritic spine morphology describes CAP1 deletion in cultured hippocampal neurons, not ARP2. Searches for ARP2 and for a caveat about effects from other cell types found no passage in our copy addressing that claim; no page numbers are available. (LLM, conf=0.75)

      Experimental — accuracy not yet measured
    • cites [85] Spence EF, Kanak DJ, Carlson BR, Soderling SH (2016) The Arp2/3 complex is essential for distinct stages of spine synapse maturation, including synapse unsilencing. J Neurosci 36:9696–9709. https://doi.org/10.1523/JNEUROSCI.0876-16.2016 source

      The synapse-unsilencing section says the sparse-transfection experiments predominantly reflect postsynaptic ArpC3 loss in neurons receiving WT input. It does not discuss whether effects of Arp2/3 from other cell types can or cannot be ruled out. Searches for other cell types and non-cell-autonomous contributions found no passage addressing that limitation; page numbers were unavailable in our copy. (LLM, conf=0.69)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    Microglia surrounding Aβ plaques in NDAN are hyperactive and more effectively recognize damaged synapses with greater phagocytic capacity than microglia in AD.

    “concluding that microglia surrounding Aβ plaques in NDAN are hyperactive and more effectively recognize damaged synapses with greater phagocytic capacity than microglia in AD [27].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [27] Fracassi A, Marcatti M, Tumurbaatar B, Woltjer R, Moreno S, Taglialatela G (2023) TREM2 -induced activation of microglia contributes to synaptic integrity in cognitively intact aged individuals with Alzheimer’s neuropathology. Brain Pathol. https://doi.org/10.1111/bpa.13108 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    CFL1 is one of the main components of actin/cofilin rods, which are insoluble aggregates that lead to neurodysfunction.

    “CFL1 is one of the main components of actin/cofilin rods, which are insoluble aggregates that lead to neurodysfunction [4, 101].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [4] Bamburg JR, Bernstein BW, Davis RC, Flynn KC, Goldsbury C, Jensen JR et al (2010) ADF/cofilin-actin rods in neurodegenerative diseases. Curr Alzheimer Res 7:241–250. https://doi.org/10.2174/156720510791050902 source

      The “Isolation and characterization of rods” section identifies cofilin-1 as a core rod component, and “Cofilin-actin rods form in neurites and block vesicular transport and distal synaptic activity” links rods to neuronal dysfunction (page numbers unavailable). The copy describes rods as aggregated actin filaments but does not establish that they are insoluble; it says isolated rods are not stable in non-ionic detergents. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [101] Wang Q, Yuan W, Yang X, Wang Y, Li Y, Qiao H (2020) Role of cofilin in Alzheimer’s disease. Front Cell Dev Biol 8:584898. https://doi.org/10.3389/fcell.2020.584898 source

      The Introduction identifies CFL1 as the gene encoding cofilin-1, and the Cofilin-Actin Rods section describes rods containing ADF/cofilin and actin in a 1:1 ratio. That section calls them rod-shaped filament bundles, but does not establish that they are insoluble aggregates or that the rods themselves cause neuronal dysfunction; the Conclusion discusses dysfunction involving cofilin more generally. Page numbers are unavailable in our copy. (LLM, conf=0.82)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Cytoskeleton reorganization is necessary to carry out these processes.

    “At the molecular level, cytoskeleton reorganization is necessary to carry out these processes [29].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [29] Franco-Bocanegra McAuley, Nicoll B (2019) Molecular mechanisms of microglial motility: changes in ageing and Alzheimer’s disease. Cells 8:639. https://doi.org/10.3390/cells8060639 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    ARP2 is not expressed solely in microglia.

    “It is worth to mention that ARP2 is not expressed solely in microglia; therefore, we cannot rule out effects from other cell types [35, 85].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [35] Heinze A, Schuldt C, Khudayberdiev S, Van Bommel B, Hacker D, Schulz TG et al (2022) Functional interdependence of the actin regulators CAP1 and cofilin1 in control of dendritic spine morphology. Cell Mol Life Sci 79:558. https://doi.org/10.1007/s00018-022-04593-8 source

      The Results section reports CAP1 expression in mouse neurons and dendritic spines, not ARP2 expression. Searches for ARP2 with microglia and for Arp2/3 in neurons found no passage in our copy addressing whether ARP2 is expressed outside microglia. No page numbers were provided for these passages. (LLM, conf=0.76)

      Experimental — accuracy not yet measured
    • cites [85] Spence EF, Kanak DJ, Carlson BR, Soderling SH (2016) The Arp2/3 complex is essential for distinct stages of spine synapse maturation, including synapse unsilencing. J Neurosci 36:9696–9709. https://doi.org/10.1523/JNEUROSCI.0876-16.2016 source
  • Classified as probably not a substantial claim.

    Premisecitation

    In a transgenic mouse model of AD, efficient microglial clustering around Aβ plaques mitigates amyloid-driven tau seeding.

    “Considering a previous study in a transgenic mouse model of AD demonstrating that efficient microglial clustering around Aβ plaques mitigates amyloid-driven tau seeding [32]”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [32] Gratuze M, Chen Y, Parhizkar S, Jain N, Strickland MR, Serrano JR et al (2021) Activated microglia mitigate Aβ-associated tau seeding and spreading. J Exp Med 218:e20210542. https://doi.org/10.1084/jem.20210542 source

      The Conclusion reports that microglial depletion or TREM2 deficiency increased Aβ-associated tau pathology, supporting a protective role for microglia. But the Introduction and Abstract state that repopulated microglia clustered around plaques yet showed elevated tau seeding and spreading. The paper therefore supports protection by appropriately activated microglia, not clustering alone. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    There is no clear evidence of CFL1 and CAP1 changes in AD.

    “Although there is no clear evidence of CFL1 and CAP1 changes in AD [28, 72],”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [28] Franco-Bocanegra DK, George B, Lau LC, Holmes C, Nicoll JAR, Boche D (2019) Microglial motility in Alzheimer’s disease and after Aβ42 immunotherapy: a human post-mortem study. Acta Neuropathol Commun 7:174. https://doi.org/10.1186/s40478-019-0828-x source

      The Results section (Microglial motility-related proteins; page not provided) reports no significant difference in CFL1 between AD cases and controls. The four proteins examined were Iba1, CFL1, P2RY12 and CORO1A, not CAP1, so this paper does not support the CAP1 part of the claim. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [72] Pelucchi S, Vandermeulen L, Pizzamiglio L, Aksan B, Yan J, Konietzny A et al (2020) Cyclase-associated protein 2 dimerization regulates cofilin in synaptic plasticity and Alzheimer’s disease. Brain Commun 2:fcaa086. https://doi.org/10.1093/braincomms/fcaa086 source

      The Results section, “Synaptic localization of CAP2 and cofilin is impaired in Alzheimer’s disease hippocampi” (page unavailable), reports no change in CAP1 total levels in the hippocampus or superior frontal gyrus of AD patients. It also reports a significant increase in hippocampal synaptic cofilin levels, so the broad claim that there is no clear evidence of cofilin/CFL1 changes is not supported, although total cofilin levels were unchanged. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    ARP2, CAP1, and CFL1 are proteins related to engulfment processes through actin-based motility mechanisms, and were recently associated with AD resilience according to protein coexpression analysis.

    “In this context, ARP2, CAP1, and CFL1 are proteins related to engulfment processes through actin-based motility mechanisms [28, 29], that were recently associated with AD resilience according to protein coexpression analysis [39].”
    Quote in the paperSubstantial claim3 of 3 sources checked
    • cites [28] Franco-Bocanegra DK, George B, Lau LC, Holmes C, Nicoll JAR, Boche D (2019) Microglial motility in Alzheimer’s disease and after Aβ42 immunotherapy: a human post-mortem study. Acta Neuropathol Commun 7:174. https://doi.org/10.1186/s40478-019-0828-x source

      The Introduction (page not provided) describes Arp2/3 and CFL1 as involved in actin organization and links actin-based microglial structures to migration and phagocytosis. It does not identify CAP1 or establish its role in engulfment. The AD-resilience finding is attributed to a different citation, [39], so it is not judged against this source. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
    • cites [29] Franco-Bocanegra McAuley, Nicoll B (2019) Molecular mechanisms of microglial motility: changes in ageing and Alzheimer’s disease. Cells 8:639. https://doi.org/10.3390/cells8060639 source
    • cites [39] Huang Z, Merrihew GE, Larson EB, Park J, Plubell D, Fox EJ et al (2023) Brain proteomic analysis implicates actin filament processes and injury response in resilience to Alzheimer’s disease. Nat Commun 14:2747. https://doi.org/10.1038/s41467-023-38376-x source

      The Results sections on protein co-expression and M5 enrichment associate an actin-filament-related protein module with resilience to Alzheimer’s disease. They do not identify ARP2, CAP1, or CFL1 as the proteins associated with resilience; the named resilience-associated actin-related protein is CAPG, not CAP1. The engulfment-mechanism clause is attached to other citations and is not assessed here. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Aging reduces microglial adhesion and migration toward fibrillar Aβ in APP/PS1 mice and even in wild-type mice.

    “It has been shown that aging reduces microglial adhesion and migration toward fibrillar Aβ in APP/PS1 mice and even in wild-type mice [23].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [23] Fang Y, Wang J, Yao L, Li C, Wang J, Liu Y et al (2018) The adhesion and migration of microglia to β-amyloid (Aβ) is decreased with aging and inhibited by Nogo/NgR pathway. J Neuroinflammation 15:210. https://doi.org/10.1186/s12974-018-1250-1 source
  • Classified as probably not a substantial claim.

    Premisecitation

    Microglial function is highly dependent on baseline motility, which consists of the extension, retraction, and movement of microglial processes, allowing membrane ruffling.

    “Microglial function is highly dependent on baseline motility, which consists of the extension, retraction, and movement of microglial processes [37, 70], allowing membrane ruffling.”
    Quote in the paperSubstantial claim2 of 2 sources checked
    • cites [37] Hristovska I, Pascual O (2016) Deciphering resting microglial morphology and process motility from a synaptic prospect. Front Integr Neurosci. https://doi.org/10.3389/fnint.2015.00073 source

      The Introduction (page unavailable) defines microglial motility as the continual extension and retraction of processes while the soma remains stationary. It says rapid process motility could be compatible with certain synaptic functions, but does not establish that microglial function is highly dependent on baseline motility. The Role of Purines section reports membrane ruffling after ATP signaling in vitro, not as a general consequence of baseline motility. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
    • cites [70] Parkhurst CN, Gan W-B (2010) Microglia dynamics and function in the CNS. Curr Opin Neurobiol 20:595–600. https://doi.org/10.1016/j.conb.2010.07.002 source

      The section 'Baseline microglial dynamics and rapid process extension' describes constant movement of microglial processes and reports process extension and retraction. But it says the functional significance of baseline motility remains unknown, so it does not establish that microglial function is highly dependent on it. The cited text also does not describe membrane ruffling. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Genetic variants of genes related to autophagy functions are involved in resilience against AD neuropathology.

    “However, it has been reported that genetic variants of genes related to autophagy functions are involved in resilience against AD neuropathology [82, 92, 107].”
    Quote in the paperNot a substantial claim3 of 3 sources checked
    • cites [82] Seto M, Weiner RL, Dumitrescu L, Hohman TJ (2021) Protective genes and pathways in Alzheimer’s disease: moving towards precision interventions. Mol Neurodegener 16:29. https://doi.org/10.1186/s13024-021-00452-5 source
    • cites [92] Tesi N, Van Der Lee SJ, Hulsman M, Jansen IE, Stringa N, Van Schoor NM et al (2020) Immune response and endocytosis pathways are associated with the resilience against Alzheimer’s disease. Transl Psychiatry 10:332. https://doi.org/10.1038/s41398-020-01018-7 source

      The Discussion (page unavailable) associates genetic variants in immune-response and endocytosis pathways with resilience against AD in cognitively healthy centenarians. Autophagy was not among the five pathways studied, and resilience was assessed through avoidance of AD rather than resistance to measured AD neuropathology. Those specific parts of the claim are not supported by this paper. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
    • cites [107] Zhang M, Ganz AB, Rohde S, Rozemuller AJM, Bank NB, Reinders MJT et al (2022) Resilience and resistance to the accumulation of amyloid plaques and neurofibrillary tangles in centenarians: an age-continuous perspective. Alzheimers Dement. https://doi.org/10.1002/alz.12899 source

      The Discussion (page unavailable in our copy) links protective variants associated with autophagy to centenarians’ cognitive health despite AD neuropathology. It proposes that genetically defined resilience may explain this observation; it does not establish that autophagy-related variants are involved in that resilience. (LLM, conf=0.82)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Findingcitation

    48 DEGs in plaque-AsymAD and 9 DEGs in plaque-AD were previously linked to AD targets through RNA-seq, proteomic, and metabolomic studies.

    “Furthermore, 48 DEGs in plaque-AsymAD and 9 DEGs in plaque-AD were previously linked to AD targets through RNA-seq, proteomic, and metabolomic studies.”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [109] Agora: an open platform for exploration of Alzheimer’s disease evidence

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Findingown data

    There is a trend toward decreased overall GFAP coverage in AsymAD cases compared with AD cases, but it is not significant.

    “A trend toward increased overall IBA1 and decreased overall GFAP coverage in AsymAD cases was observed, although the difference was not significant (Fig. 3b, e).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    There is a trend toward increased overall IBA1 coverage in AsymAD cases compared with AD cases, but it is not significant.

    “A trend toward increased overall IBA1 and decreased overall GFAP coverage in AsymAD cases was observed, although the difference was not significant (Fig. 3b, e).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    From the 813 upregulated genes in plaque-AsymAD ROIs, 57 DEGs were in endocytic-, autophagy- and phagocytic-related pathways; in contrast, only 12 DEGs out of the 986 upregulated genes in plaque-AD ROIs belonged to these pathways.

    “From the 813 upregulated genes in the plaque-AsymAD ROIs, 57 DEGs were in the endocytic-, autophagy- and phagocytic-related pathways. In contrast, only 12 DEGs out of the 986 upregulated genes in plaque-AD ROIs belonged to these pathways (Fig. 4c and Supplementary Excel 2).”
    Quote in the paperSubstantial claim
  • The quote only partly states this claim.

    Findingown data

    GFAP levels are decreased in intermediate plaques in AsymAD MFGs compared with AD MFGs.

    “whereas GFAP levels were decreased in intermediate plaques (Fig. 3f).”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingown data

    The three previously classified amyloid plaques were positive for Aβ-amyloid using 6E10 and 4G8 anti-Aβ-amyloid antibodies.

    “Using the 6E10 and 4G8 anti-Aβ-amyloid antibodies, we confirmed that the three previously classified amyloid plaques were positive for Aβ-amyloid (Supplementary Fig. 3).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    A total of 1799 DEGs were identified; 813 were upregulated in the Aβ plaque microenvironment of AsymAD (plaque-AsymAD), while 986 were upregulated in AD (plaque-AD).

    “We identified a total of 1799 DEGs. Among these genes, 813 were upregulated in the Aβ plaque microenvironment of AsymAD (plaque-AsymAD), while 986 were upregulated in AD (plaque-AD) (Fig. 4b and Supplementary Excel 1).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Mean ARP2 immunoreactivity is increased in the IBA1-positive area of the AsymAD plaque microenvironment, indicating elevated ARP2 levels in microglia surrounding amyloid plaques in AsymAD MFGs compared to AD MFGs.

    “Furthermore, the mean of ARP2 immunoreactivity increased when evaluating only the IBA1-positive (IBA1+) area of the AsymAD plaque microenvironment. This indicates elevated ARP2 levels in microglia surrounding the amyloid plaques in AsymAD MFGs compared to AD MFGs (Fig. 5c).”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingown data

    The increase in CAP1 levels was not statistically significant between conditions when overall intensity was determined.

    “This increase in CAP1 levels was not statistically significant between conditions when overall intensity was determined (Fig. 5g);”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationreasoning

    The two mechanisms of efficient actin-based microglial motility and decreased tau seeding can potentially protect against the toxic cascade initiated by Aβ, preserving brain health and slowing AD pathology progression.

    “These two mechanisms can potentially protect against the toxic cascade initiated by Aβ, preserving brain health, and slowing AD pathology progression.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    AsymAD brains show larger nuclei and cellular sizes than age-matched healthy controls.

    “even show larger nuclei and cellular sizes than age-matched healthy controls [79].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [79] Riudavets MA, Iacono D, Resnick SM, O’Brien R, Zonderman AB, Martin LJ et al (2007) Resistance to Alzheimer’s pathology is associated with nuclear hypertrophy in neurons. Neurobiol Aging 28:1484–1492. https://doi.org/10.1016/j.neurobiolaging.2007.05.005 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Chronic traumatic encephalopathy (CTE) was not reported for any of these cases.

    “Chronic traumatic encephalopathy (CTE) was not reported for any of these cases.”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim.

    Study design and conductnone given

    AD and AsymAD cases were selected according to age, NFTs Braak stages, Thal stage, and TDP43/LATE status.

    “AD and AsymAD cases were selected according to age (mean [SD], 82.68 [10.4] years in AD cases and 88.15 [5.5] years in AsymAD cases), NFTs Braak stages (5.32 [0.82] in AD cases and 4.62 [0.76] in AsymAD cases), Thal stage (4.72 [0.75] in AD cases and 4.25[0.45] in AsymAD cases) and TDP43/LATE status (0.94 [0.94] in AD cases and 0.54 [0.82] in AsymAD cases).”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    For GeoMx HuWTA analyses, p values were adjusted for multiple analyses using the Benjamini-Hochberg procedure with a false discovery rate (FDR) of 0.01.

    “For GeoMx HuWTA analyses, the p values were adjusted for multiple analyses using the Benjamini–Hochberg procedure with a false discovery rate (FDR) of 0.01.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    All subjects received their last clinical evaluation within 15 months before death.

    “All subjects received their last clinical evaluation within 15 months before death.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductown data

    None of the control individuals or AD or AsymAD cases exhibited Lewy bodies in the examined sections.

    “None of the control individuals or AD or AsymAD cases exhibited Lewy bodies in the examined sections.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationreasoning

    The upregulation of actin-based motility genes potentially heightens membrane dynamics, facilitating efficient migration toward the vicinity of the plaque and promoting the elongation of microglial branches, enhancing their engagement with the plaque.

    “This upregulation potentially heightens membrane dynamics, facilitating efficient migration toward the vicinity of the plaque and promoting the elongation of microglial branches, enhancing their engagement with the plaque.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Data collection and analyses were performed by a researcher blinded to the experimental conditions.

    “Data collection and analyses were performed by a researcher blinded to the experimental conditions.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationown data

    Although both AsymAD and AD cases exhibit neuritic plaques, the dystrophic neuritic component induced by tau is notably more pronounced in AD cases.

    “indicating that although both AsymAD and AD cases exhibit neuritic plaques, the dystrophic neuritic component induced by tau is notably more pronounced in AD cases.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationreasoning

    A stronger microglial barrier surrounding plaques in the cortices of AsymAD cases may protect against synaptic derangement and neuritic damage, which, in turn, could mitigate the astrocytic response.

    “Therefore, a stronger microglial barrier surrounding plaques in the cortices of AsymAD cases may protect against synaptic derangement and neuritic damage, which, in turn, could mitigate the astrocytic response.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Neuronal degeneration in AD could occur via non-NFT formation in multiple neurons.

    “Interestingly, it has been reported that neuronal degeneration in AD could occur via non-NFT formation in multiple neurons [44].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [44] Ihara Y (2001) PHF and PHF-like fibrils–cause or consequence? Neurobiol Aging 22:123–126. https://doi.org/10.1016/S0197-4580(00)00200-1 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Microglia around plaques are key regulators of their morphology in AD mouse models.

    “Substantial evidence suggests that microglia around plaques are key regulators of their morphology in AD mouse models.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationcitation

    Microglia are potentially critical regulators of plaque conformation and dense-core Aβ plaques do not form spontaneously but are constructed from loosely organized Aβ material produced by phagocytic microglia.

    “These findings suggest that microglia are potentially critical regulators of plaque conformation and that dense-core Aβ plaques do not form spontaneously but are constructed from loosely organized Aβ material produced by phagocytic microglia.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    ARP2 is part of the Arp2/3 complex, and its role is to engage with actin monomers to start the formation of a new filament branch.

    “While ARP2 (Actin related protein 2) is part of the Arp2/3 complex, and its role is to engage with actin monomers to start the formation of a new filament branch [75]”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [75] Pollard TD, Beltzner CC. Structure and function of the Arp2/3 complex

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S4 (based). May combine two claims.

    Interpretationreasoning

    These genes potentially facilitate the deposition of Aβ into dense-core plaques and prevent amyloid-driven tau pathogenesis within the amyloid plaque microenvironment of filamentous plaques.

    “These genes potentially facilitate the deposition of Aβ into dense-core plaques and prevent amyloid-driven tau pathogenesis within the amyloid plaque microenvironment of filamentous plaques.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationown data

    In AsymAD cases, microglia exhibit more efficient actin-based motility mechanisms, which could heighten actin dynamics, facilitating efficient migration toward the vicinity of the plaque, promoting the elongation of microglial branches, and enhancing engagement with the plaque.

    “Overall, these data suggest that in AsymAD cases, microglia exhibit more efficient actin-based motility mechanisms, which could heighten actin dynamics, facilitating efficient migration toward the vicinity of the plaque, promoting the elongation of microglial branches, and enhancing engagement with the plaque.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Interpretationreasoning

    AsymAD brains may possess the ability to increase ARP2 expression in response to amyloid pathology.

    “Furthermore, AsymAD brains may possess the ability to increase ARP2 expression in response to amyloid pathology.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationreasoning

    Increased microglial chemotactic motility in AsymAD could allow microglia to remodel their branches and surround the amyloid plaque, facilitating the engulfment and clearance of toxic Aβ aggregates.

    “These could allow microglia to remodel their branches and surround the amyloid plaque, facilitating the engulfment and clearance of toxic Aβ aggregates”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationreasoning

    This may mitigate Aβ-associated tau pathogenesis and decrease tau seeding.

    “which may mitigate Aβ-associated tau pathogenesis and decrease tau seeding”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationcitation

    Microglia with enhanced migration and extension toward newly formed amyloid plaques could reduce the effect of amyloid in promoting tau seeding and subsequently mitigate synaptic deterioration.

    “This ability of microglia to efficiently cluster around plaques could reduce the effect of amyloid in promoting tau seeding and subsequently mitigate synaptic deterioration.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    The findings are limited to the middle frontal gyrus brain area.

    “Furthermore, our findings are limited to the middle frontal gyrus brain area, and this limitation should be considered when interpreting the data.”
    Quote in the paperNot a substantial claim
80 of 80
  • The paper relies on this without support.

    The molecular mechanisms underlying resilience in the presence of NFTs and amyloid plaques remain poorly understood.

    “Despite studies using whole-brain approaches, bulk proteomics, and transcriptomics have helped understand how synaptic preservation and neuron survival occur in AsymAD brains, the molecular mechanisms underlying resilience in the presence of NFTs and amyloid plaques remain poorly understood.”
  • The paper relies on this without support.

    Amyloid plaques create a unique molecular environment that facilitates the seeding and spreading of tau pathology.

    “Moreover, amyloid-plaques create a unique molecular environment that facilitates the seeding and spreading of tau pathology.”
2 of 2

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

Each contradiction between two passages listed here was confirmed by an independent check.

  • Reported GeoMx ROI counts conflict with the figure caption

    Minor

    The methods say 16-18 ROIs were selected per condition, but Fig. 4 reports only nine ROIs for the AsymAD condition. The results also describe 16-19 ROIs per sample, whereas the caption reports 16 ROIs across two AD cases.

  • Western blot sampling requires a third AsymAD case at Braak stage VI

    Minor

    The methods report three AsymAD cases at each of Braak stages IV, V, and VI for western blots. Table 1 lists only two AsymAD cases at stage VI (cases 44 and 45).

2 of 2

Cites

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Cited by

Sorted by citations

Authors
Jury-Garfe, N., Redding-Ochoa, J., You, Y., Martínez, P., Karahan, H., Chimal-Juárez, E., Johnson, T. S., Zhang, J., Resnick, S., Kim, J., Troncoso, J. C., & Lasagna-Reeves, C. A.
Affiliations
  • Indiana University School of Medicine
  • Indiana University Indianapolis (US)
  • National Institute on Aging (US)
  • Johns Hopkins University (US)
Venue
Acta Neuropathologica
Published
2024-08-05
Volume
148
Issue
1
Pages
15-15
ISSN
  • 0001-6322 (ISSN-L)
  • 1432-0533
OpenAlex
W4401344797
Cited by
22
References
115
Citations by year
2026: 9 · 2025: 11 · 2024: 2
FWCI
5.18
Type
journal article
Language
en
Open access
Locations
  • Acta Neuropathologica (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • IUScholarWorks (Indiana University) (submittedVersion, cc-by)
  • PubMed Central (submittedVersion, cc-by)
Funders
  • National Institute of Health (P30AG066507, U19AG033655)
  • NIH/NINDS (1R01NS119280)
  • NIH/NIA (1RF1AG059639, AARGD-591887, R21AG075541, 1R01GM148970)
  • Department of Defense Award (AZ180006)
  • Indiana Alzheimer Disease Center, School of Medicine, Indiana University (UL1TR002529)
Topics
  • Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
  • Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
  • Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
Keywords
Alzheimer's disease, asymptomatic Alzheimer's disease, cognitive resilience, amyloid plaques, microglia, tau seeding, actin-based motility, Arp2/3 complex, CAP1, plaque microenvironment, dystrophic neurites, phagocytosis, autophagy, endocytosis, spatial transcriptomics, neuritic plaques
MeSH terms
Aged, Aged, 80 and over, Alzheimer Disease, Brain, Female, Humans, Male, Amyloid beta-Peptides, Neurofibrillary Tangles, tau Proteins, Microglia, Plaque, Amyloid, Cognitive Reserve

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-17.

Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-17.

Cited sources are checked by gpt-6-sol.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

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