The DOI matches its Crossref record; 47 of the 47 references it cites were found in a registry or an index.
Nucleic Acid Detection Using CRISPR/Cas Biosensing Technologies
Abstract
Abstract For infectious diseases, rapid and accurate identification of the pathogen is critical for effective management and treatment, but diagnosis remains challenging, particularly in resource-limited areas. Methods that accurately detect pathogen nucleic acids can provide robust, accurate, rapid, and ultrasensitive technologies for point-of-care diagnosis of pathogens, and thus yield information that is invaluable for disease management and treatment. Several technologies, mostly PCR-based, have been employed for pathogen detection; however, these require expensive reagents and equipment, and skilled personnel. CRISPR/Cas systems have been used for genome editing, based on their ability to accurately recognize and cleave specific DNA and RNA sequences. Moreover, following recognition of the target sequence, certain CRISPR/Cas systems including orthologues of Cas13, Cas12a, and Cas14 exhibit collateral nonspecific catalytic activities that can be employed for nucleic acid detection, for example by degradation of a labeled nucleic acid to produce a fluorescent signal. CRISPR/Cas systems are amenable to multiplexing, thereby enabling a single diagnostic test to identify multiple targets down to attomolar (10–18 mol/L) concentrations of target molecules. Developing devices that couple CRISPR/Cas with lateral flow systems may allow inexpensive, accurate, highly sensitive, in-field deployable diagnostics. These sensors have myriad applications, from human health to agriculture. In this review, we discuss the recent advances in the field of CRISPR-based biosensing technologies and highlight insights of their potential use in a myriad of applications.
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Citations
Cites
The new frontier of genome engineering with CRISPR-Cas9
Doudna, J. A., & Charpentier, E. (2014) · Science · doi:10.1126/science.1258096 · Cited by 7,062
Development and Applications of CRISPR-Cas9 for Genome Engineering
Hsu, P. D., Lander, E. S., & Zhang, F. (2014) · Cell · doi:10.1016/j.cell.2014.05.010 · Cited by 5,762
Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System
Zetsche, B., Gootenberg, J. S., Abudayyeh, O. O., Slaymaker, I. M., Makarova, K. S., Essletzbichler, P., Volz, S. E., Joung, J., van der Oost, J., Regev, A., et al. (2015) · Cell · doi:10.1016/j.cell.2015.09.038 · Cited by 4,761
CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity
Chen, J. S., Ma, E., Harrington, L. B., Da Costa, M., Tian, X., Palefsky, J. M., & Doudna, J. A. (2018) · Science · doi:10.1126/science.aar6245 · Cited by 4,507
Nucleic acid detection with CRISPR-Cas13a/C2c2
Gootenberg, J. S., Abudayyeh, O. O., Lee, J. W., Essletzbichler, P., Dy, A. J., Joung, J., Verdine, V., Donghia, N., Daringer, N. M., Freije, C. A., et al. (2017) · Science · doi:10.1126/science.aam9321 · Cited by 3,844
Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6
Gootenberg, J. S., Abudayyeh, O. O., Kellner, M. J., Joung, J., Collins, J. J., & Zhang, F. (2018) · Science · doi:10.1126/science.aaq0179 · Cited by 2,638
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
Makarova, K. S., Wolf, Y. I., Iranzo, J., Shmakov, S. A., Alkhnbashi, O. S., Brouns, S. J. J., Charpentier, E., Cheng, D., Haft, D. H., Horvath, P., et al. (2020) · Nature Reviews Microbiology · doi:10.1038/s41579-019-0299-x · Cited by 2,445
Ishino, Y., Shinagawa, H., Makino, K., Amemura, M., & Nakata, A. (1987) · Journal of Bacteriology · doi:10.1128/jb.169.12.5429-5433.1987 · Cited by 2,421
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
Abudayyeh, O. O., Gootenberg, J. S., Konermann, S., Joung, J., Slaymaker, I. M., Cox, D. B. T., Shmakov, S., Makarova, K. S., Semenova, E., Minakhin, L., et al. (2016) · Science · doi:10.1126/science.aaf5573 · Cited by 2,336
RNA targeting with CRISPR–Cas13
Abudayyeh, O. O., Gootenberg, J. S., Essletzbichler, P., Han, S., Joung, J., Belanto, J. J., Verdine, V., Cox, D. B. T., Kellner, M. J., Regev, A., et al. (2017) · Nature · doi:10.1038/nature24049 · Cited by 2,093
Cox, D. B. T., Gootenberg, J. S., Abudayyeh, O. O., Franklin, B., Kellner, M. J., Joung, J., & Zhang, F. (2017) · Science · doi:10.1126/science.aaq0180 · Cited by 1,834
SHERLOCK: nucleic acid detection with CRISPR nucleases
Kellner, M. J., Koob, J. G., Gootenberg, J. S., Abudayyeh, O. O., & Zhang, F. (2019) · Nature Protocols · doi:10.1038/s41596-019-0210-2 · Cited by 1,631
CRISPR-Cas12a-assisted nucleic acid detection
Li, S.-Y., Cheng, Q.-X., Wang, J.-M., Li, X.-Y., Zhang, Z.-L., Gao, S., Cao, R.-B., Zhao, G.-P., & Wang, J. (2018) · Cell Discovery · doi:10.1038/s41421-018-0028-z · Cited by 1,530
RNA virus interference via CRISPR/Cas13a system in plants
Aman, R., Ali, Z., Butt, H., Mahas, A., Aljedaani, F., Khan, M. Z., Ding, S., & Mahfouz, M. (2018) · Genome Biology · doi:10.1186/s13059-017-1381-1 · Cited by 1,497
Self-citationField-deployable viral diagnostics using CRISPR-Cas13
Myhrvold, C., Freije, C. A., Gootenberg, J. S., Abudayyeh, O. O., Metsky, H. C., Durbin, A. F., Kellner, M. J., Tan, A. L., Paul, L. M., Parham, L. A., et al. (2018) · Science · doi:10.1126/science.aas8836 · Cited by 1,444
Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components
Pardee, K., Green, A. A., Takahashi, M. K., Braff, D., Lambert, G., Lee, J. W., Ferrante, T., Ma, D., Donghia, N., Fan, M., et al. (2016) · Cell · doi:10.1016/j.cell.2016.04.059 · Cited by 1,439
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
Harrington, L. B., Burstein, D., Chen, J. S., Paez-Espino, D., Ma, E., Witte, I. P., Cofsky, J. C., Kyrpides, N. C., Banfield, J. F., & Doudna, J. A. (2018) · Science · doi:10.1126/science.aav4294 · Cited by 1,247
Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection
East-Seletsky, A., O’Connell, M. R., Knight, S. C., Burstein, D., Cate, J. H. D., Tjian, R., & Doudna, J. A. (2016) · Nature · doi:10.1038/nature19802 · Cited by 1,236
Law, J. W.-F., Ab Mutalib, N.-S., Chan, K.-G., & Lee, L.-H. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2014.00770 · Cited by 1,205
Koczula, K. M., & Gallotta, A. (2016) · Essays in Biochemistry · doi:10.1042/ebc20150012 · Cited by 1,147
CRISPR-Cas12a has both cis- and trans-cleavage activities on single-stranded DNA
Li, S.-Y., Cheng, Q.-X., Liu, J.-K., Nie, X.-Q., Zhao, G.-P., & Wang, J. (2018) · Cell Research · doi:10.1038/s41422-018-0022-x · Cited by 1,130
Diagnostics for the developing world
Mabey, D., Peeling, R. W., Ustianowski, A., & Perkins, M. D. (2004) · Nature Reviews Microbiology · doi:10.1038/nrmicro841 · Cited by 1,054
Blauwkamp, T. A., Thair, S., Rosen, M. J., Blair, L., Lindner, M. S., Vilfan, I. D., Kawli, T., Christians, F. C., Venkatasubrahmanyam, S., Wall, G. D., et al. (2019) · Nature Microbiology · doi:10.1038/s41564-018-0349-6 · Cited by 962
CRISPR/Cas Systems towards Next-Generation Biosensing
Li, Y., Li, S., Wang, J., & Liu, G. (2019) · Trends in Biotechnology · doi:10.1016/j.tibtech.2018.12.005 · Cited by 917
Point-of-care nucleic acid testing for infectious diseases
Niemz, A., Ferguson, T. M., & Boyle, D. S. (2011) · Trends in Biotechnology · doi:10.1016/j.tibtech.2011.01.007 · Cited by 838
Li, L., Li, S., Wu, N., Wu, J., Wang, G., Zhao, G., & Wang, J. (2019) · ACS Synthetic Biology · doi:10.1021/acssynbio.9b00209 · Cited by 793
Recent Advances in Biosensor Technology for Potential Applications – An Overview
Vigneshvar, S., Sudhakumari, C. C., Senthilkumaran, B., & Prakash, H. (2016) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2016.00011 · Cited by 674
Point-of-care tests for diagnosing infections in the developing world
Peeling, R. W., & Mabey, D. (2010) · Clinical Microbiology and Infection · doi:10.1111/j.1469-0691.2010.03279.x · Cited by 500
Liang, M., Li, Z., Wang, W., Liu, J., Liu, L., Zhu, G., Karthik, L., Wang, M., Wang, K.-F., Wang, Z., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-11648-1 · Cited by 430
Byrne, B., Stack, E., Gilmartin, N., & O’Kennedy, R. (2009) · Sensors · doi:10.3390/s90604407 · Cited by 422
Teng, F., Guo, L., Cui, T., Wang, X.-G., Xu, K., Gao, Q., Zhou, Q., & Li, W. (2019) · Genome Biology · doi:10.1186/s13059-019-1742-z · Cited by 385
Molecular and Nonmolecular Diagnostic Methods for Invasive Fungal Infections
Arvanitis, M., Anagnostou, T., Fuchs, B. B., Caliendo, A. M., & Mylonakis, E. (2014) · Clinical Microbiology Reviews · doi:10.1128/cmr.00091-13 · Cited by 353
Point-of-Care Diagnostics in Low Resource Settings: Present Status and Future Role of Microfluidics
Sharma, S., Zapatero-Rodríguez, J., Estrela, P., & O'Kennedy, R. (2015) · Biosensors · doi:10.3390/bios5030577 · Cited by 349
Quan, J., Langelier, C., Kuchta, A., Batson, J., Teyssier, N., Lyden, A., Caldera, S., McGeever, A., Dimitrov, B., King, R., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz418 · Cited by 261
A low-cost paper-based synthetic biology platform for analyzing gut microbiota and host biomarkers
Takahashi, M. K., Tan, X., Dy, A. J., Braff, D., Akana, R. T., Furuta, Y., Donghia, N., Ananthakrishnan, A., & Collins, J. J. (2018) · Nature Communications · doi:10.1038/s41467-018-05864-4 · Cited by 236
The Value of In Vitro Diagnostic Testing in Medical Practice: A Status Report
Rohr, U.-P., Binder, C., Dieterle, T., Giusti, F., Messina, C. G. M., Toerien, E., Moch, H., & Schäfer, H. H. (2016) · PLOS ONE · doi:10.1371/journal.pone.0149856 · Cited by 229
CRISPR-based rapid and ultra-sensitive diagnostic test for Mycobacterium tuberculosis
Ai, J.-W., Zhou, X., Xu, T., Yang, M., Chen, Y., He, G.-Q., Pan, N., Cai, Y., Li, Y., Wang, X., et al. (2019) · Emerging Microbes & Infections · doi:10.1080/22221751.2019.1664939 · Cited by 220
Low-cost tools for diagnosing and monitoring HIV infection in low-resource settings
Wu, G., & Zaman, M. H. (2012) · Bulletin of the World Health Organization · doi:10.2471/blt.12.102780 · Cited by 190
CRISPR-Cas13d mediates robust RNA virus interference in plants
Mahas, A., Aman, R., & Mahfouz, M. (2019) · Genome Biology · doi:10.1186/s13059-019-1881-2 · Cited by 188
Self-citationImproved Template Preparation for PCR-Based Assays for Detection of Food-Borne Bacterial Pathogens
Lampel, K. A., Orlandi, P. A., & Kornegay, L. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.10.4539-4542.2000 · Cited by 176
CRISPR-Cas14 is now part of the artillery for gene editing and molecular diagnostic
Aquino‐Jarquín, G. (2019) · Nanomedicine Nanotechnology Biology and Medicine · doi:10.1016/j.nano.2019.03.006 · Cited by 153
Nucleic Acid Detection of Plant Genes Using CRISPR-Cas13
Abudayyeh, O. O., Gootenberg, J. S., Kellner, M. J., & Zhang, F. (2019) · The CRISPR Journal · doi:10.1089/crispr.2019.0011 · Cited by 122
Harnessing CRISPR/Cas systems for programmable transcriptional and post-transcriptional regulation
Mahas, A., Neal Stewart, C., & Mahfouz, M. M. (2018) · Biotechnology Advances · doi:10.1016/j.biotechadv.2017.11.008 · Cited by 110
Self-citationEngineering RNA Virus Interference via the CRISPR/Cas13 Machinery in Arabidopsis
Aman, R. A., Mahas, A., Butt, H., Ali, Z., Aljedaani, F., & Mahfouz, M. M. (2018) · Viruses · doi:10.3390/v10120732 · Cited by 105
Self-citationPathogen detection in the CRISPR–Cas era
Sashital, D. G. (2018) · Genome Medicine · doi:10.1186/s13073-018-0543-4 · Cited by 101
Harnessing CRISPR Effectors for Infectious Disease Diagnostics
Bhattacharyya, R. P., Thakku, S. G., & Hung, D. T. (2018) · ACS Infectious Diseases · doi:10.1021/acsinfecdis.8b00170 · Cited by 80
Synthetic Biology-Based Point-of-Care Diagnostics for Infectious Disease
Wei, T., & Cheng, C. (2016) · Cell chemical biology · doi:10.1016/j.chembiol.2016.07.016 · Cited by 35
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CRISPR-Driven Biosensors: A New Frontier in Rapid and Accurate Disease Detection
Razavi, Z., Soltani, M., Souri, M., & Pazoki-Toroudi, H. (2026) · Critical Reviews in Analytical Chemistry · doi:10.1080/10408347.2024.2400267 · Cited by 45
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Metadata
- Authors
- Aman, R., Mahas, A., & Mahfouz, M.
- Venue
- ACS Synthetic Biology
- Publisher
- American Chemical Society (ACS)
- Published
- 2020-03-11
- Volume
- 9
- Issue
- 6
- Pages
- 1226-1233
- ISSN
- 2161-5063 (ISSN-L)
- OpenAlex
- W3012071400
- Cited by
- 409
- References
- 47
- FWCI
- 15.85
- Type
- journal article
- Language
- en
- Open access
- closed
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