SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

De novo assembly of human genomes with massively parallel short read sequencing

Li, R., Zhu, H., Ruan, J., Qian, W., Fang, X., Shi, Z., Li, Y., Li, S., Shan, G., Kristiansen, K., et al. (2010) · Genome Research · doi:10.1101/gr.097261.109 · Cited by 2,926

Coagulase-negative staphylococci release a purine analog that inhibits Staphylococcus aureus virulence

Chin, D., Goncheva, M. I., Flannagan, R. S., Deecker, S. R., Guariglia-Oropeza, V., Ensminger, A. W., & Heinrichs, D. E. (2021) · Nature Communications · doi:10.1038/s41467-021-22175-3 · Cited by 72

Discovery and Genomic Characterization of a Novel Henipavirus, Angavokely Virus, from Fruit Bats in Madagascar

Madera, S., Kistler, A., Ranaivoson, H. C., Ahyong, V., Andrianiaina, A., Andry, S., Raharinosy, V., Randriambolamanantsoa, T. H., Ravelomanantsoa, N. A. F., Tato, C. M., et al. (2022) · Journal of Virology · doi:10.1128/jvi.00921-22 · Cited by 74

Biological Mitigation of Antibiotic Resistance Gene Dissemination by Antioxidant-Producing Microorganisms in Activated Sludge Systems

Ren, C.-Y., Wu, E.-L., Hartmann, E. M., & Zhao, H.-P. (2021) · Environmental Science & Technology · doi:10.1021/acs.est.1c04641 · Cited by 73

Bacterially produced metabolites protect C. elegans neurons from degeneration

Urrutia, A., García-Angulo, V. A., Fuentes, A., Caneo, M., Legüe, M., Urquiza, S., Delgado, S. E., Ugalde, J., Burdisso, P., & Calixto, A. (2020) · PLOS Biology · doi:10.1371/journal.pbio.3000638 · Cited by 71

New genomic data and analyses challenge the traditional vision of animal epithelium evolution

Belahbib, H., Renard, E., Santini, S., Jourda, C., Claverie, J.-M., Borchiellini, C., & Le Bivic, A. (2018) · BMC Genomics · doi:10.1186/s12864-018-4715-9 · Cited by 71

Evolutionary diversification of methanotrophic ANME-1 archaea and their expansive virome

Laso-Pérez, R., Wu, F., Crémière, A., Speth, D. R., Magyar, J. S., Zhao, K., Krupovic, M., & Orphan, V. J. (2023) · Nature Microbiology · doi:10.1038/s41564-022-01297-4 · Cited by 68

On the origin of reverse transcriptase-using CRISPR-Cas systems and their hyperdiverse, enigmatic spacer repertoires

Silas, S., Makarova, K. S., Shmakov, S., Páez-Espino, D., Mohr, G., Liu, Y., Davison, M., Roux, S., Krishnamurthy, S. R., Fu, B. X. H., et al. (2017) · mBio · doi:10.1128/mbio.00897-17 · Cited by 62

Occurrence of carbapenemase-producing Enterobacteriaceae in a Portuguese river: blaNDM, blaKPC and blaGES among the detected genes

Teixeira, P., Tacão, M., Pureza, L., Gonçalves, J., Silva, A., Cruz-Schneider, M. P., & Henriques, I. (2020) · Environmental Pollution · doi:10.1016/j.envpol.2020.113913 · Cited by 67

Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome

Huang, S., Jiang, S., Huo, D., Allaband, C., Estaki, M., Cantu, V., Belda-Ferre, P., Vázquez-Baeza, Y., Zhu, Q., Ma, C., et al. (2021) · Microbiome · doi:10.1186/s40168-021-01102-0 · Cited by 61

Isolation and infection cycle of a polinton-like virus virophage in an abundant marine alga

(2023) · doi:10.1038/s41564-022-01305-7 · Cited by 55

Unicellular origin of the animal microRNA machinery

Bråte, J., Neumann, R. S., Fromm, B., Haraldsen, A. A. B., Tarver, J. E., Suga, H., Donoghue, P. C. J., Peterson, K. J., Ruiz-Trillo, I., Grini, P. E., et al. (2018) · Current Biology · doi:10.1016/j.cub.2018.08.018 · Cited by 53

Kluyvera ascorbata Strain from Hospital Sewage Carrying the mcr-1 Colistin Resistance Gene

Zhao, F., & Zong, Z. (2016) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.01165-16 · Cited by 53

Use of genetically modified bacteria for drug delivery in humans: Revisiting the safety aspect

Wegmann, U., Carvalho, A. L., Stocks, M., & Carding, S. R. (2017) · Scientific Reports · doi:10.1038/s41598-017-02591-6 · Cited by 53

Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics

Kothe, C. I., Mohellibi, N., & Renault, P. (2022) · Food Research International · doi:10.1016/j.foodres.2022.111265 · Cited by 51

igraph 1.0 enables fast and robust network analysis across programming languages

Antonov, M., Csárdi, G., Horvát, S., Müller, K., Nepusz, T., Noom, D., Salmon, M., Traag, V., Welles, B. F., & Zanini, F. (2026) · PLOS One · doi:10.1371/journal.pone.0355108 · Cited by 56

Phylogenomics Identifies a New Major Subgroup of Apicomplexans, Marosporida class nov., with Extreme Apicoplast Genome Reduction

Mathur, V., Kwong, W. K., Husnik, F., Irwin, N. A. T., Kristmundsson, Á., Gestal, C., Freeman, M., & Keeling, P. J. (2021) · Genome Biology and Evolution · doi:10.1093/gbe/evaa244 · Cited by 50

Bacterial Genomics Reveal the Complex Epidemiology of an Emerging Pathogen in Arctic and Boreal Ungulates

Forde, T. L., Orsel, K., Zadoks, R. N., Biek, R., Adams, L. G., Checkley, S. L., Davison, T., De Buck, J., Dumond, M., Elkin, B. T., et al. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01759 · Cited by 50

Genomic Diversity of Azole-Resistant Aspergillus fumigatus in the United States

Etienne, K. A., Berkow, E. L., Gade, L., Nunnally, N., Lockhart, S. R., Beer, K., Jordan, I. K., Rishishwar, L., & Litvintseva, A. P. (2021) · mBio · doi:10.1128/mbio.01803-21 · Cited by 48

Nicotinamide mononucleotide production by fructophilic lactic acid bacteria

Sugiyama, K., Iijima, K., Yoshino, M., Dohra, H., Tokimoto, Y., Nishikawa, K., Idogaki, H., & Yoshida, N. (2021) · Scientific Reports · doi:10.1038/s41598-021-87361-1 · Cited by 46

Structure and function of virion RNA polymerase of a crAss-like phage

Drobysheva, A. V., Panafidina, S. A., Kolesnik, M. V., Klimuk, E. I., Minakhin, L., Yakunina, M. V., Borukhov, S., Nilsson, E., Holmfeldt, K., Yutin, N., et al. (2021) · Nature · doi:10.1038/s41586-020-2921-5 · Cited by 44

Influence of Photobioreactor Set-up on the Survival of Microalgae Inoculum

Bani, A., Fernandez, F. G. A., D'Imporzano, G., Parati, K., & Adani, F. (2021) · Bioresource Technology · doi:10.1016/j.biortech.2020.124408 · Cited by 42

DNA methylation activates retron Ec86 filaments for antiphage defense

Wang, Y., Wang, C., Guan, Z., Cao, J., Xu, J., Wang, S., Cui, Y., Wang, Q., Chen, Y., Yin, Y., et al. (2024) · Cell Reports · doi:10.1016/j.celrep.2024.114857 · Cited by 41

Contamination of street food with multidrug-resistant Salmonella, in Ouagadougou, Burkina Faso

Nikiema, M. E. M., Pardos de la Gandara, M., Compaore, K. A. M., Ky Ba, A., Soro, K. D., Nikiema, P. A., Barro, N., Sangare, L., & Weill, F.-X. (2021) · PLoS ONE · doi:10.1371/journal.pone.0253312 · Cited by 41

Monospecific renaming within the cyanobacterial genus Limnospira (Spirulina) and consequences for food authorization

Roussel, T., Halary, S., Duval, C., Piquet, B., Cadoret, J.-P., Vernès, L., Bernard, C., & Marie, B. (2023) · Journal of Applied Microbiology · doi:10.1093/jambio/lxad159 · Cited by 39

Capturing One of the Human Gut Microbiome’s Most Wanted: Reconstructing the Genome of a Novel Butyrate-Producing, Clostridial Scavenger from Metagenomic Sequence Data

Jeraldo, P., Hernandez, A., Nielsen, H. B., Chen, X., White, B. A., Goldenfeld, N., Nelson, H., Alhquist, D., Boardman, L., & Chia, N. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00783 · Cited by 38

Plastid genomes and proteins illuminate the evolution of eustigmatophyte algae and their bacterial endosymbionts

Ševčíková, T., Yurchenko, T., Fawley, K. P., Amaral, R., Strnad, H., Santos, L. M. A., Fawley, M. W., & Eliáš, M. (2019) · Genome Biology and Evolution · doi:10.1093/gbe/evz004 · Cited by 38

Clonal Candida auris and ESKAPE pathogens on the skin of residents of nursing homes

Proctor, D. M., Sansom, S. E., Deming, C., Conlan, S., Blaustein, R. A., Atkins, T. K., Program, N. C. S., Mullikin, J., Thomas, J., Young, A., et al. (2025) · Nature · doi:10.1038/s41586-025-08608-9 · Cited by 37

The Evolutionary Origins of Extreme Halophilic Archaeal Lineages

Feng, Y., Neri, U., Gosselin, S., Louyakis, A. S., Papke, R. T., Gophna, U., & Gogarten, J. P. (2021) · Genome Biology and Evolution · doi:10.1093/gbe/evab166 · Cited by 37

Ultraconserved elements resolve the phylogeny and corroborate patterns of molecular rate variation in herons (Aves: Ardeidae)

Hruska, J. P., Holmes, J., Oliveros, C., Shakya, S., Lavretsky, P., McCracken, K. G., Sheldon, F. H., & Moyle, R. G. (2023) · Ornithology · doi:10.1093/ornithology/ukad005 · Cited by 37

Population structure and pangenome analysis of Enterobacter bugandensis uncover the presence of blaCTX-M-55, blaNDM-5 and blaIMI-1, along with sophisticated iron acquisition strategies

Matteoli, F. P., Passarelli-Araujo, H., Pedrosa-Silva, F., Olivares, F. L., & Venancio, T. M. (2020) · Genomics · doi:10.1016/j.ygeno.2019.07.003 · Cited by 27

Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome of very-low-birth-weight preterm infants.

Kiu, R., Darby, E. M., Alcon-Giner, C., Acuna-Gonzalez, A., Camargo, A., Lamberte, L. E., Phillips, S., Sim, K., Shaw, A. G., Clarke, P., et al. (2025) · Nature communications · doi:10.1038/s41467-025-62584-2 · Cited by 36

Genomic insights into antibiotic resistance and mobilome of lactic acid bacteria and bifidobacteria

Rozman, V., Mohar Lorbeg, P., Treven, P., Accetto, T., Janežič, S., Rupnik, M., & Bogovič Matijašić, B. (2023) · Life Science Alliance · doi:10.26508/lsa.202201637 · Cited by 36

New insights into the genome of Rhodococcus ruber strain Chol-4

Guevara, G., Castillo Lopez, M., Alonso, S., Perera, J., & Navarro-Llorens, J. M. (2019) · BMC Genomics · doi:10.1186/s12864-019-5677-2 · Cited by 33

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences

Banerjee, S., Bhandary, P., Woodhouse, M., Sen, T. Z., Wise, R. P., & Andorf, C. M. (2021) · BMC Bioinformatics · doi:10.1186/s12859-021-04120-9 · Cited by 35

Genomic and serologic characterization of enterovirus A71 brainstem encephalitis

Leon, K. E., Schubert, R. D., Casas-Alba, D., Hawes, I. A., Ramachandran, P. S., Ramesh, A., Pak, J. E., Wu, W., Cheung, C. K., Crawford, E. D., et al. (2020) · Neurology Neuroimmunology & Neuroinflammation · doi:10.1212/nxi.0000000000000703 · Cited by 32

Steller’s sea cow genome suggests this species began going extinct before the arrival of Paleolithic humans

Sharko, F. S., Boulygina, E. S., Tsygankova, S. V., Slobodova, N. V., Alekseev, D. A., Krasivskaya, A. A., Rastorguev, S. M., Tikhonov, A. N., & Nedoluzhko, A. V. (2021) · Nature Communications · doi:10.1038/s41467-021-22567-5 · Cited by 31

Experimental Evolution of Bacillus subtilis Reveals the Evolutionary Dynamics of Horizontal Gene Transfer and Suggests Adaptive and Neutral Effects

Slomka, S., Françoise, I., Hornung, G., Asraf, O., Biniashvili, T., Pilpel, Y., & Dahan, O. (2020) · Genetics · doi:10.1534/genetics.120.303401 · Cited by 31

Characterization of Cefiderocol Heteroresistance in Carbapenem-Resistant Acinetobacter Baumannii (CRAB) Following Exposure to Human Pleural Fluid (HPF)

Mezcord, V., Escalante, J., Nishimura, B., Traglia, G. M., Sharma, R., Valle, Q., Tuttobene, M. R., Subils, T., Marin, I., Pasterán, F., et al. (2023) · doi:10.20944/preprints202306.0950.v1 · Cited by 27

SSR identification and phylogenetic analysis in four plant species based on complete chloroplast genome sequences

Zhu, Y., Zhang, X., Yan, S., Feng, C., Wang, D., Yang, W., Daud, M. K., Xiang, J., & Mei, L. (2023) · Plasmid · doi:10.1016/j.plasmid.2023.102670 · Cited by 24

Contrasting strategies for sucrose utilization in a floral yeast clade

Gonçalves, C., Marques, M., & Gonçalves, P. (2022) · mSphere · doi:10.1128/msphere.00035-22 · Cited by 23

A single fungal strain was the unexpected cause of a mass aspergillosis outbreak in the world’s largest and only flightless parrot

Winter, D. J., Weir, B. S., Glare, T., Rhodes, J., Perrott, J., Fisher, M. C., Stajich, J. E., Digby, A., Dearden, P. K., & Cox, M. P. (2022) · iScience · doi:10.1016/j.isci.2022.105470 · Cited by 21

Genotypic, proteomic, and phenotypic approaches to decipher the response to caspofungin and calcineurin inhibitors in clinical isolates of echinocandin-resistant Candida glabrata

Ceballos-Garzon, A., Monteoliva, L., Gil, C., Alvarez-Moreno, C., Vega-Vela, N. E., Engelthaler, D. M., Bowers, J., Le Pape, P., & Parra-Giraldo, C. M. (2022) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkab454 · Cited by 18

High-risk Escherichia coli clones that cause neonatal meningitis and association with recrudescent infection

Nhu, N. T. K., Phan, M.-D., Hancock, S. J., Peters, K. M., Alvarez-Fraga, L., Forde, B. M., Andersen, S. B., Miliya, T., Harris, P. N., Beatson, S. A., et al. (2024) · eLife · doi:10.7554/elife.91853.3 · Cited by 41

Invasive Californian death caps develop mushrooms unisexually and bisexually

Wang, Y.-W., McKeon, M. C., Elmore, H., Hess, J., Golan, J., Gage, H., Mao, W., Harrow, E., Gonçalves, S. C., Hull, C. M., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-42317-z · Cited by 20

Comparative Genomics and Physiological Investigation of a New Arthrospira/Limnospira Strain O9.13F Isolated from an Alkaline, Winter Freezing, Siberian Lake

Misztak, A. E., Waleron, M., Furmaniak, M., Waleron, M. M., Bazhenova, O., Daroch, M., & Waleron, K. F. (2021) · Cells · doi:10.3390/cells10123411 · Cited by 19

Computational Strategies for Scalable Genomics Analysis

Shi, L., & Wang, Z. (2019) · Genes · doi:10.3390/genes10121017 · Cited by 19

Comparative Genomics-Based Probiotic Relevance of Limosilactobacillus fermentum KUB-D18

Phujumpa, P., Muangham, S., Jatuponwiphat, T., Koffas, M., Nakphaichit, M., & Vongsangnak, W. (2022) · Gene · doi:10.1016/j.gene.2022.146747 · Cited by 18

Exploration of urease-mediated biomineralization for defluoridation by Proteus columbae MLN9 with an emphasis on its genomic characterization

Let, M., Majhi, K., Halder, U., De, A., Saha, D., Chitikineni, A., Roychowdhury, T., Varshney, R. K., & Bandopadhyay, R. (2023) · Journal of Environmental Chemical Engineering · doi:10.1016/j.jece.2023.109791 · Cited by 18

A new microsporidian parasite, Ordospora pajunii sp. nov (Ordosporidae), of Daphnia longispina highlights the value of genomic data for delineating species boundaries

de Albuquerque, N. R. M., Haag, K. L., Fields, P. D., Cabalzar, A., Ben‐Ami, F., Pombert, J., & Ebert, D. (2022) · Journal of Eukaryotic Microbiology · doi:10.1111/jeu.12902 · Cited by 18

Genomic atlas of Bifidobacterium infantis and B. longum informs infant probiotic design

Shao, Y., Wang, S., Gichuki, B. M., Stares, M. D., Rozday, T. J., Kumar, N., Browne, H. P., Dawson, N. J. R., Njunge, J. M., Tigoi, C., et al. (2026) · Cell · doi:10.1016/j.cell.2026.01.007 · Cited by 17

Genomic Characterization of Lactiplantibacillus plantarum Strains: Potential Probiotics from Ethiopian Traditional Fermented Cottage Cheese

Gizachew, S., & Engidawork, E. (2024) · Genes · doi:10.3390/genes15111389 · Cited by 15

Shared evolutionary footprints suggest mitochondrial oxidative damage underlies multiple complex I losses in fungi

Schikora-Tamarit, M. À., Marcet-Houben, M., Nosek, J., & Gabaldón, T. (2021) · Open Biology · doi:10.1098/rsob.200362 · Cited by 16

Pattern-Based Genome Mining Guides Discovery of the Antibiotic Indanopyrrole A from a Marine Streptomycete

Sweeney, D., Bogdanov, A., Chase, A. B., Castro-Falcón, G., Trinidad-Javier, A., Dahesh, S., Nizet, V., & Jensen, P. R. (2024) · Journal of Natural Products · doi:10.1021/acs.jnatprod.4c00934 · Cited by 16

Molecular characterization of encephalomyocarditis virus strains isolated from an African elephant and rats in a French zoo

Romey, A., Lamglait, B., Blanchard, Y., Touzain, F., Quenault, H., Relmy, A., Zientara, S., Blaise-Boisseau, S., & Bakkali-Kassimi, L. (2021) · Journal of Veterinary Diagnostic Investigation · doi:10.1177/1040638720978389 · Cited by 16

The potential of non-starter lactic acid bacteria from Cheddar cheese to colonise the gut

Leeuwendaal, N., Stanton, C., O'Toole, P. W., & Beresford, T. P. (2021) · Journal of Functional Foods · doi:10.1016/j.jff.2021.104425 · Cited by 14

Genomic Characteristion of Opportunistic Pathogen Kluyvera Reveals a Novel CTX-M Subgroup

Yu, K., Huang, Z., Lan, R., Morris, J. G., Xiao, Y., Fu, S., Gao, H., Bai, X., Li, K., & Wang, D. (2023) · Microorganisms · doi:10.3390/microorganisms11122836 · Cited by 12

The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46

Suzuki, S., Yamaguchi, H., & Kawachi, M. (2019) · Journal of Genomics · doi:10.7150/jgen.38149 · Cited by 12

Antibiotic resistance profiles and population structure of disease-associated Staphylococcus aureus infecting patients in Fort Portal Regional Referral Hospital, Western Uganda

Ackers-Johnson, G., Kibombo, D., Kusiima, B., Nsubuga, M. L., Kigozi, E., Kajumbula, H. M., Kateete, D. P., Walwema, R., Ackers, H. L., Goodhead, I. B., et al. (2021) · Microbiology · doi:10.1099/mic.0.001000 · Cited by 12

Profiling the resistome and virulome of Bacillus strains used for probiotic-based sanitation: a multicenter WGS analysis

Bini, F., Soffritti, I., D’Accolti, M., Mazziga, E., Caballero, J. D., David, S., Argimon, S., Aanensen, D. M., Volta, A., Bisi, M., et al. (2025) · BMC Genomics · doi:10.1186/s12864-025-11582-1 · Cited by 11

New Technologies for Studying Biofilms

Franklin, M. J., Chang, C., Akiyama, T., & Bothner, B. (2015) · Microbial Biofilms · doi:10.1128/9781555817466.ch1 · Cited by 11

Gut microbiota-mediated conversion of mangiferin to norathyriol alters short chain fatty acid and urate metabolism

Bunt, D., Schwalbe, M., Hayeeawaema, F., & El Aidy, S. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2508422 · Cited by 10

In-depth genomic identification and safety evaluation of Lactobacillus Acidophilus LA85

Qi, Y., Dong, Y., Gu, J., Cai, Y., Zhang, Y., Gai, Z., & Han, M. (2024) · Journal of Functional Foods · doi:10.1016/j.jff.2024.106604 · Cited by 9

Characterization of the brain virome in human immunodeficiency virus infection and substance use disorder

Dang, X., Hanson, B. A., Orban, Z. S., Jimenez, M., Suchy, S., & Koralnik, I. J. (2024) · PLOS ONE · doi:10.1371/journal.pone.0299891 · Cited by 9

Molecular mechanism of bacteriophage contraction structure of an S-layer–penetrating bacteriophage

Wilson, J. S., Fortier, L.-C., Fagan, R. P., & Bullough, P. A. (2025) · Life Science Alliance · doi:10.26508/lsa.202403088 · Cited by 9

Effects of Resistant Starch on Symptoms, Fecal Markers and Gut Microbiota in Parkinson’s Disease – The RESISTA-PD Trial

Becker, A., Schmartz, G. P., Gröger, L., Grammes, N., Galata, V., Philippeit, H., Weiland, J., Ludwig, N., Meese, E., Tierling, S., et al. (2021) · doi:10.1101/2021.02.07.21251098 · Cited by 102

Achromobacter xylosoxidans isolates exhibit genome diversity, variable virulence, high levels of antibiotic resistance, and potential intrahost evolution

Acharya, P., Lloyd, C., Lam, N. T., Kumke, J., Ray, S., Yanira Muñoz Ramirez, Z., Das, S., & Lam, H. N. (2026) · mSphere · doi:10.1128/msphere.00870-25 · Cited by 8

Whole Genome Analysis of Echinocandin Non‐Susceptible Candida Glabrata Clinical Isolates: a Multi‐Center Study in China

Li, Y., Hou, X., Li, R., Liao, K., Ma, L., Wang, X., Ji, P., Kong, H., Xia, Y., Ding, H., et al. (2023) · BMC Microbiology · doi:10.1186/s12866-023-03105-3 · Cited by 7

Phylogenomic analysis does not support a classic but controversial hypothesis of progenitor‐derivative origins for the serpentine endemic Clarkia franciscana

Sianta, S. A., & Kay, K. M. (2022) · Evolution · doi:10.1111/evo.14484 · Cited by 7

Selection, Comparative Genomics, and Potential Probiotic Features of Escherichia coli 5C, a pks-Negative Strain Isolated from Healthy Infant Donor Feces

Di Pierro, F., Sagheddu, V., Galletti, S., Casaroli, A., Labrini, E., Soldi, S., Cazzaniga, M., Bertuccioli, A., Matera, M., Cavecchia, I., et al. (2026) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-025-10522-5 · Cited by 5

Draft Genome Sequence of the Strict Anaerobe Clostridium homopropionicum LuHBu1 (DSM 5847)

Beck, M. H., Poehlein, A., Bengelsdorf, F. R., Schiel-Bengelsdorf, B., Daniel, R., & Dürre, P. (2015) · Genome Announcements · doi:10.1128/genomea.01112-15 · Cited by 5

From phenotype to receptor: validating physiological clustering of Escherichia coli phages through comprehensive receptor analysis

(2025) · doi:10.1128/jvi.01061-25 · Cited by 5

Structural basis for Salmonella infection by two Microviridae phages

Hu, W., Liu, Z., Wei, Y., Bian, Q., Lan, W., Fan, C., Song, J., Sun, Q., Zhang, X., Liu, Y., et al. (2025) · Communications Biology · doi:10.1038/s42003-025-08595-7 · Cited by 4

Molecular Typing of mcr-1 Escherichia Coli Isolates From Pigs and Farm Environment Based on fumC and fimH Alleles

Oliveira, G. S., Lentz, S. A., Wink, P. L., & Martins, A. F. (2023) · Future Microbiology · doi:10.2217/fmb-2022-0173 · Cited by 3

Antimicrobial activity of iron-depriving pyoverdines against human opportunistic pathogens

Vollenweider, V., Rehm, K., Chepkirui, C., Pérez-Berlanga, M., Polymenidou, M., Piel, J., Bigler, L., & Kümmerli, R. (2024) · eLife · doi:10.7554/elife.92493.3 · Cited by 3

Draft genome sequence of non-pathogenic Escherichia coli 5C LMG S-33222, isolated from healthy donor feces

Di Pierro, F., Zerbinati, N., Guasti, L., Cazzaniga, M., Bertuccioli, A., Palazzi, C. M., Labrini, E., Sagheddu, V., & Soldi, S. (2024) · Microbiology Resource Announcements · doi:10.1128/mra.00580-24 · Cited by 2

Calcineurin‐Dependent Stress Adaptation Enables Caspofungin Heteroresistance Leading to Stable Resistance in Candida Glabrata

Su, Y., Li, Y., Xiao, M., Guo, D., Perlin, D. S., Shor, E., Xu, Y., & Li, Y. (2026) · Advanced Science · doi:10.1002/advs.76369 · Cited by 2

Caspase-1 activates gasdermin A in non-mammals

Billman, Z. P., Kovacs, S. B., Wei, B., Kang, K., Cissé, O. H., & Miao, E. A. (2024) · doi:10.7554/elife.92362.3 · Cited by 1

Spatio-temporal dynamics of Hendra virus in Australia reveal stable maintenance of diverse viral clades among Pteropus bats

(2026) · doi:10.1038/s41564-025-02254-7 · Cited by 1

Caspase-1 activates gasdermin A in non-mammals

Billman, Z. P., Kovacs, S. B., Wei, B., Kang, K., Cissé, O. H., & Miao, E. A. (2023) · doi:10.1101/2023.09.28.559989 · Cited by 1

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