SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

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Immunoglobulin A Coating Identifies Colitogenic Bacteria in Inflammatory Bowel Disease

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Complex archaea that bridge the gap between prokaryotes and eukaryotes

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A new genomic blueprint of the human gut microbiota

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Asgard archaea illuminate the origin of eukaryotic cellular complexity

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American Gut: an Open Platform for Citizen-Science Microbiome Research

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MetaQUAST: evaluation of metagenome assemblies

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Viable SARS-CoV-2 in the air of a hospital room with COVID-19 patients

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Massive expansion of human gut bacteriophage diversity

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Piercing the dark matter: bioinformatics of long-range sequencing and mapping

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Isolation of an archaeon at the prokaryote–eukaryote interface

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Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum

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Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with a high attack rate

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Targeted suppression of human IBD-associated gut microbiota commensals by phage consortia for treatment of intestinal inflammation

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Neutralizing Antibody and Soluble ACE2 Inhibition of a Replication-Competent VSV-SARS-CoV-2 and a Clinical Isolate of SARS-CoV-2

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Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species

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Adaptive Evolution within Gut Microbiomes of Healthy People

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Effects of microbiota-directed foods in gnotobiotic animals and undernourished children

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The widespread IS200/IS605 transposon family encodes diverse programmable RNA-guided endonucleases

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An expanded arsenal of immune systems that protect bacteria from phages

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Cross-reactivity between tumor MHC class I–restricted antigens and an enterococcal bacteriophage

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Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

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Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases

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Bifidobacterium adolescentis as a key member of the human gut microbiota in the production of GABA

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Bifidobacterium bifidum strains synergize with immune checkpoint inhibitors to reduce tumour burden in mice

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Metagenomic approaches in microbial ecology: an update on whole-genome and marker gene sequencing analyses

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Mechanisms of Increased Resistance to Chlorhexidine and Cross-Resistance to Colistin following Exposure of Klebsiella pneumoniae Clinical Isolates to Chlorhexidine

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High-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome

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Assessing species biomass contributions in microbial communities via metaproteomics

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A marine bacterial community capable of degrading poly(ethylene terephthalate) and polyethylene

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GraphAligner: rapid and versatile sequence-to-graph alignment

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Comparing and evaluating metagenome assembly tools from a microbiologist's perspective - not only size matters!

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Cooperative Recognition of Internationally Disseminated Ceftriaxone-Resistant Neisseriagonorrhoeae Strain

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Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells

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A marine fungus Alternaria alternata FB1 efficiently degrades polyethylene

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Distinct polysaccharide utilization profiles of human intestinal Prevotella copri isolates

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Cooperative Metabolic Adaptations in the Host Can Favor Asymptomatic Infection and Select for Attenuated Virulence in an Enteric Pathogen

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Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome

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Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women

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Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents.

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A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals

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Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study

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A gut microbial signature for combination immune checkpoint blockade across cancer types

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Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts

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A comprehensive evaluation of long read error correction methods

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Non-photosynthetic predators are sister to red algae

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Prediction of strain level phage-host interactions across the Escherichia genus using only genomic information

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Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant clostridia

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Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal

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A survey of k-mer methods and applications in bioinformatics

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Effect of ammonia on anaerobic digestion of municipal solid waste: Inhibitory performance, bioaugmentation and microbiome functional reconstruction

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Site-and-branch-heterogeneous analyses of an expanded dataset favour mitochondria as sister to known Alphaproteobacteria

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Complete genome sequence and comparative genomics of the probiotic yeast Saccharomyces boulardii

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Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts

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From Omics to Multi-Omics: A Review of Advantages and Tradeoffs

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Probiotic potential and safety evaluation of Enterococcus faecalis OB14 and OB15, isolated from traditional tunisian testouri cheese and rigouta, using physiological and genomic analysis

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The new red algal subphylum Proteorhodophytina comprises the largest and most divergent plastid genomes known

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Genetic determinants of host tropism in Klebsiella phages

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