Fast and accurate long-read alignment with Burrows-Wheeler transform.
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Items 101–200 of 1,225
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- Repression of Stress-Induced LINE-1 Expression Protects Cancer Cell Subpopulations from Lethal Drug ExposureGuler, Gulfem Dilek, Tindell, Charles Albert, Pitti, Robert, Wilson, Catherine, Nichols, Katrina, KaiWai Cheung, Tommy, Kim, Hyo-Jin, Wongchenko, Matthew, Yan, Yibing, Haley, Benjamin et al. · 2017 · Cancer Cell
- Adaptive evolution of multiple traits through multiple mutations at a single geneLinnen, Catherine R., Poh, Yu-Ping, Peterson, Brant K., Barrett, Rowan D. H., Larson, Joanna G., Jensen, Jeffrey D., Hoekstra, Hopi E. · 2013 · Science
- Genomic insights into the evolutionary origin of Myxozoa within CnidariaChang, E. Sally, Neuhof, Moran, Rubinstein, Nimrod D., Diamant, Arik, Philippe, Hervé, Huchon, Dorothée, Cartwright, Paulyn · 2015 · Proceedings of the National Academy of Sciences
- Reciprocal Signaling between Glioblastoma Stem Cells and Differentiated Tumor Cells Promotes Malignant ProgressionWang, Xiuxing, Prager, Briana C., Wu, Qiulian, Kim, Leo J.Y., Gimple, Ryan C., Shi, Yu, Yang, Kailin, Morton, Andrew R., Zhou, Wenchao, Zhu, Zhe et al. · 2018 · Cell Stem Cell
- Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysisWesolowska-Andersen, Agata, Bahl, Martin Iain, Carvalho, Vera, Kristiansen, Karsten, Sicheritz-Pontén, Thomas, Gupta, Ramneek, Licht, Tine Rask · 2014 · Microbiome
- Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classesEbler, Jana, Ebert, Peter, Clarke, Wayne E., Rausch, Tobias, Audano, Peter A., Houwaart, Torsten, Mao, Yafei, Korbel, Jan O., Eichler, Evan E., Zody, Michael C. et al. · 2022 · Nature Genetics
- Mutational signatures of ionizing radiation in second malignanciesBehjati, Sam, Gundem, Gunes, Wedge, David C., Roberts, Nicola D., Tarpey, Patrick S., Cooke, Susanna L., Van Loo, Peter, Alexandrov, Ludmil B., Ramakrishna, Manasa, Davies, Helen et al. · 2016 · Nature Communications
- H3.3K27M Cooperates with Trp53 Loss and PDGFRA Gain in Mouse Embryonic Neural Progenitor Cells to Induce Invasive High-Grade GliomasPathania, Manav, De Jay, Nicolas, Maestro, Nicola, Harutyunyan, Ashot S., Nitarska, Justyna, Pahlavan, Pirasteh, Henderson, Stephen, Mikael, Leonie G., Richard-Londt, Angela, Zhang, Ying et al. · 2017 · Cancer Cell
- HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell TypesZirkel, Anne, Nikolic, Milos, Sofiadis, Konstantinos, Mallm, Jan-Philipp, Brackley, Chris A., Gothe, Henrike, Drechsel, Oliver, Becker, Christian, Altmüller, Janine, Josipovic, Natasa et al. · 2018 · Molecular Cell
- A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and EnhancersEl Khattabi, Laila, Zhao, Haiyan, Kalchschmidt, Jens, Young, Natalie, Jung, Seolkyoung, Van Blerkom, Peter, Kieffer-Kwon, Philippe, Kieffer-Kwon, Kyong-Rim, Park, Solji, Wang, Xiang et al. · 2019 · Cell
- Semi-automated assembly of high-quality diploid human reference genomesJarvis, Erich D., Formenti, Giulio, Rhie, Arang, Guarracino, Andrea, Yang, Chentao, Wood, Jonathan, Tracey, Alan, Thibaud-Nissen, Francoise, Vollger, Mitchell R., Porubsky, David et al. · 2022 · Nature
- An organoid‐derived bronchioalveolar model for SARS‐CoV‐2 infection of human alveolar type II‐like cellsLamers, Mart M, van der Vaart, Jelte, Knoops, Kèvin, Riesebosch, Samra, Breugem, Tim I, Mykytyn, Anna Z, Beumer, Joep, Schipper, Debby, Bezstarosti, Karel, Koopman, Charlotte D et al. · 2021 · The EMBO Journal
- Frequent loss of heterozygosity in CRISPR-Cas9–edited early human embryosAlanis-Lobato, Gregorio, Zohren, Jasmin, McCarthy, Afshan, Fogarty, Norah M. E., Kubikova, Nada, Hardman, Emily, Greco, Maria, Wells, Dagan, Turner, James M. A., Niakan, Kathy K. · 2021 · Proceedings of the National Academy of Sciences
- A suppressor screen in Mecp2 mutant mice implicates cholesterol metabolism in Rett syndromeBuchovecky, Christie M, Turley, Stephen D, Brown, Hannah M, Kyle, Stephanie M, McDonald, Jeffrey G, Liu, Benny, Pieper, Andrew A, Huang, Wenhui, Katz, David M, Russell, David W et al. · 2013 · Nature Genetics
- Dnmt3a loss predisposes murine hematopoietic stem cells to malignant transformationMayle, Allison, Yang, Liubin, Rodriguez, Benjamin, Zhou, Ting, Chang, Edmund, Curry, Choladda V., Challen, Grant A., Li, Wei, Wheeler, David, Rebel, Vivienne I. et al. · 2015 · Blood
- De Novo Loss-of-Function Mutations in CHD2 Cause a Fever-Sensitive Myoclonic Epileptic Encephalopathy Sharing Features with Dravet SyndromeSuls, Arvid, Jaehn, Johanna A., Kecskés, Angela, Weber, Yvonne, Weckhuysen, Sarah, Craiu, Dana C., Siekierska, Aleksandra, Djémié, Tania, Afrikanova, Tatiana, Gormley, Padhraig et al. · 2013 · The American Journal of Human Genetics
- CRISPR-Based Adenine Editors Correct Nonsense Mutations in a Cystic Fibrosis Organoid BiobankGeurts, Maarten H., de Poel, Eyleen, Amatngalim, Gimano D., Oka, Rurika, Meijers, Fleur M., Kruisselbrink, Evelien, van Mourik, Peter, Berkers, Gitte, de Winter-de Groot, Karin M., Michel, Sabine et al. · 2020 · Cell Stem Cell
- CRISPR-Cas9-based mutagenesis frequently provokes on-target mRNA misregulationTuladhar, Rubina, Yeu, Yunku, Tyler Piazza, John, Tan, Zhen, Rene Clemenceau, Jean, Wu, Xiaofeng, Barrett, Quinn, Herbert, Jeremiah, Mathews, David H., Kim, James et al. · 2019 · Nature Communications
- A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencingPetti, Allegra A., Williams, Stephen R., Miller, Christopher A., Fiddes, Ian T., Srivatsan, Sridhar N., Chen, David Y., Fronick, Catrina C., Fulton, Robert S., Church, Deanna M., Ley, Timothy J. · 2019 · Nature Communications
- Acquired RAS or EGFR mutations and duration of response to EGFR blockade in colorectal cancerVan Emburgh, Beth O., Arena, Sabrina, Siravegna, Giulia, Lazzari, Luca, Crisafulli, Giovanni, Corti, Giorgio, Mussolin, Benedetta, Baldi, Federica, Buscarino, Michela, Bartolini, Alice et al. · 2016 · Nature Communications
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- The gut microbiome regulates the increases in depressive-type behaviors and in inflammatory processes in the ventral hippocampus of stress vulnerable ratsPearson-Leary, Jiah, Zhao, Chunyu, Bittinger, Kyle, Eacret, Darrell, Luz, Sandra, Vigderman, Abigail S., Dayanim, Gabriel, Bhatnagar, Seema · 2020 · Molecular Psychiatry
- Atlas of breast cancer infiltrated B-lymphocytes revealed by paired single-cell RNA-sequencing and antigen receptor profilingHu, Qingtao, Hong, Yu, Qi, Pan, Lu, Guangqing, Mai, Xueying, Xu, Sheng, He, Xiaoying, Guo, Yu, Gao, Linlin, Jing, Zhiyi et al. · 2021 · Nature Communications
- Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinomaKim, Kyu-Tae, Lee, Hye Won, Lee, Hae-Ock, Song, Hye Jin, Jeong, Da Eun, Shin, Sang, Kim, Hyunho, Shin, Yoojin, Nam, Do-Hyun, Jeong, Byong Chang et al. · 2016 · Genome Biology
- Autophagy Regulation of Metabolism Is Required for CD8+ T Cell Anti-tumor ImmunityDeVorkin, Lindsay, Pavey, Nils, Carleton, Gillian, Comber, Alexandra, Ho, Cally, Lim, Junghyun, McNamara, Erin, Huang, Haochu, Kim, Paul, Zacharias, Lauren G. et al. · 2019 · Cell Reports
- Tissue-resident memory CD8+ T cells shape local and systemic secondary T cell responsesBehr, Felix M., Parga-Vidal, Loreto, Kragten, Natasja A. M., van Dam, Teunis J. P., Wesselink, Thomas H., Sheridan, Brian S., Arens, Ramon, van Lier, Rene A. W., Stark, Regina, van Gisbergen, Klaas P. J. M. · 2020 · Nature Immunology
- Depletion of RUNX1/ETO in t(8;21) AML cells leads to genome-wide changes in chromatin structure and transcription factor bindingPtasinska, A, Assi, S A, Mannari, D, James, S R, Williamson, D, Dunne, J, Hoogenkamp, M, Wu, M, Care, M, McNeill, H et al. · 2012 · Leukemia
- SHANK2 mutations associated with autism spectrum disorder cause hyperconnectivity of human neuronsZaslavsky, Kirill, Zhang, Wen-Bo, McCready, Fraser P., Rodrigues, Deivid C., Deneault, Eric, Loo, Caitlin, Zhao, Melody, Ross, P. Joel, El Hajjar, Joelle, Romm, Asli et al. · 2019 · Nature Neuroscience
- A YAP/FOXM1 axis mediates EMT-associated EGFR inhibitor resistance and increased expression of spindle assembly checkpoint componentsNilsson, Monique B., Sun, Huiying, Robichaux, Jacqulyne, Pfeifer, Matthias, McDermott, Ultan, Travers, Jon, Diao, Lixia, Xi, Yuanxin, Tong, Pan, Shen, Li et al. · 2020 · Science Translational Medicine
- Genome Sequences Reveal Cryptic Speciation in the Human Pathogen Histoplasma capsulatumSepúlveda, Victoria E., Márquez, Roberto, Turissini, David A., Goldman, William E., Matute, Daniel R. · 2017 · mBio
- Rationally designed APOBEC3B cytosine base editors with improved specificityJin, Shuai, Fei, Hongyuan, Zhu, Zixu, Luo, Yingfeng, Liu, Jinxing, Gao, Shenghan, Zhang, Feng, Chen, Yu-Hang, Wang, Yanpeng, Gao, Caixia · 2020 · Molecular Cell
- Confirmation of fifth Candida auris clade by whole genome sequencingSpruijtenburg, Bram, Badali, Hamid, Abastabar, Mahdi, Mirhendi, Hossein, Khodavaisy, Sadegh, Sharifisooraki, Joobin, Taghizadeh Armaki, Mojtaba, de Groot, Theun, Meis, Jacques F. · 2022 · Emerging Microbes & Infections
- The Landscape of L1 Retrotransposons in the Human Genome Is Shaped by Pre-insertion Sequence Biases and Post-insertion SelectionSultana, Tania, van Essen, Dominic, Siol, Oliver, Bailly-Bechet, Marc, Philippe, Claude, Zine El Aabidine, Amal, Pioger, Léo, Nigumann, Pilvi, Saccani, Simona, Andrau, Jean-Christophe et al. · 2019 · Molecular Cell
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- Assessing the phenotypic effects in the general population of rare variants in genes for a dominant Mendelian form of diabetesFlannick, Jason, Beer, Nicola L, Bick, Alexander G, Agarwala, Vineeta, Molnes, Janne, Gupta, Namrata, Burtt, Noël P, Florez, Jose C, Meigs, James B, Taylor, Herman et al. · 2013 · Nature Genetics
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- A survey of k-mer methods and applications in bioinformaticsMoeckel, Camille, Mareboina, Manvita, Konnaris, Maxwell A., Chan, Candace S.Y., Mouratidis, Ioannis, Montgomery, Austin, Chantzi, Nikol, Pavlopoulos, Georgios A., Georgakopoulos-Soares, Ilias · 2024 · Computational and Structural Biotechnology Journal
- SORL1 rare variants: a major risk factor for familial early-onset Alzheimer’s diseaseNicolas, G, Charbonnier, C, Wallon, D, Quenez, O, Bellenguez, C, Grenier-Boley, B, Rousseau, S, Richard, A-C, Rovelet-Lecrux, A, Le Guennec, K et al. · 2016 · Molecular Psychiatry
- Intraductal papillary mucinous neoplasms arise from multiple independent clones, each with distinct mutationsFischer, Catherine G., Beleva Guthrie, Violeta, Braxton, Alicia M., Zheng, Lily, Wang, Pei, Song, Qianqian, Griffin, James F., Chianchiano, Peter E., Hosoda, Waki, Niknafs, Noushin et al. · 2019 · Gastroenterology
- Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with ReplicationFlasch, Diane A., Macia, Ángela, Sánchez, Laura, Ljungman, Mats, Heras, Sara R., García-Pérez, José L., Wilson, Thomas E., Moran, John V. · 2019 · Cell
- Rare pathogenic variants predispose to hepatocellular carcinoma in nonalcoholic fatty liver diseasePelusi, Serena, Baselli, Guido, Pietrelli, Alessandro, Dongiovanni, Paola, Donati, Benedetta, McCain, Misti Vanette, Meroni, Marica, Fracanzani, Anna Ludovica, Romagnoli, Renato, Petta, Salvatore et al. · 2019 · Scientific Reports
- Accuracy and efficiency of germline variant calling pipelines for human genome dataZhao, Sen, Agafonov, Oleg, Azab, Abdulrahman, Stokowy, Tomasz, Hovig, Eivind · 2020 · Scientific Reports
- Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with HumansCarreté, Laia, Ksiezopolska, Ewa, Pegueroles, Cinta, Gómez-Molero, Emilia, Saus, Ester, Iraola-Guzmán, Susana, Loska, Damian, Bader, Oliver, Fairhead, Cecile, Gabaldón, Toni · 2018 · Current Biology
- RNA methylation influences TDP43 binding and disease pathogenesis in models of amyotrophic lateral sclerosis and frontotemporal dementiaMcMillan, Michael, Gomez, Nicolas, Hsieh, Caroline, Bekier, Michael, Li, Xingli, Miguez, Roberto, Tank, Elizabeth M.H., Barmada, Sami J. · 2023 · Molecular Cell
- Reference genome of wild goat (Capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domesticationDong, Yang, Zhang, Xiaolei, Xie, Min, Arefnezhad, Babak, Wang, Zongji, Wang, Wenliang, Feng, Shaohong, Huang, Guodong, Guan, Rui, Shen, Wenjing et al. · 2015 · BMC Genomics
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