RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Stamatakis, Alexandros·2014·Bioinformatics

Cited by (181)

Items 101–181 of 181

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    Gouy, Richard, Baurain, Denis, Philippe, Hervé · 2015 · Philosophical Transactions of the Royal Society B: Biological Sciences
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  3. Morphological assessment of the Octopus vulgaris species complex evaluated in light of molecular‐based phylogenetic inferences
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  4. Oral Microbiome Alterations Associated with Early Childhood Caries Highlight the Importance of Carbohydrate Metabolic Activities
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  5. The nursing home elder microbiome stability and associations with age, frailty, nutrition and physical location
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  6. Phylogenetic Signal, Congruence, and Uncertainty across Bacteria and Archaea
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  7. Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids
    Jackson, Christopher, Knoll, Andrew H., Chan, Cheong Xin, Verbruggen, Heroen · 2018 · Scientific Reports
  8. Dating phototrophic microbial lineages with reticulate gene histories
    Magnabosco, C., Moore, K. R., Wolfe, J. M., Fournier, G. P. · 2018 · Geobiology
  9. Radiation of nitrogen‐metabolizing enzymes across the tree of life tracks environmental transitions in Earth history
    Parsons, Chris, Stüeken, Eva E., Rosen, Caleb J., Mateos, Katherine, Anderson, Rika E. · 2021 · Geobiology
  10. Highly recombinant VGII Cryptococcus gattii population develops clonal outbreak clusters through both sexual macroevolution and asexual microevolution
    Billmyre, R. Blake, Croll, Daniel, Li, Wenjun, Mieczkowski, Piotr, Carter, Dee A., Cuomo, Christina A., Kronstad, James W., Heitman, Joseph · 2014 · mBio
  11. Genome structures resolve the early diversification of teleost fishes
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  12. An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication
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  13. Global genetic diversity of human gut microbiome species is related to geographic location and host health
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  14. Composite genome sequence of Bacillus clausii, a probiotic commercially available as Enterogermina®, and insights into its probiotic properties
    Khatri, Indu, Sharma, Gaurav, Subramanian, Srikrishna · 2019 · BMC Microbiology
  15. The multiple evolutionary origins of the eukaryotic N-glycosylation pathway
    Lombard, Jonathan · 2016 · Biology Direct
  16. An ancestral bacterial division system is widespread in eukaryotic mitochondria
    Leger, Michelle M., Petrů, Markéta, Žárský, Vojtěch, Eme, Laura, Vlček, Čestmír, Harding, Tommy, Lang, B. Franz, Eliáš, Marek, Doležal, Pavel, Roger, Andrew J. · 2015 · Proceedings of the National Academy of Sciences
  17. Coagulase-negative staphylococci release a purine analog that inhibits Staphylococcus aureus virulence
    Chin, Denny, Goncheva, Mariya I., Flannagan, Ronald S., Deecker, Shayna R., Guariglia-Oropeza, Veronica, Ensminger, Alexander W., Heinrichs, David E. · 2021 · Nature Communications
  18. Antimicrobial overproduction sustains intestinal inflammation by inhibiting Enterococcus colonization
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  19. The complex geography of domestication of the African rice Oryza glaberrima
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  20. Mutations that adapt SARS-CoV-2 to mink or ferret do not increase fitness in the human airway
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  21. Linking Branch Lengths across Sets of Loci Provides the Highest Statistical Support for Phylogenetic Inference
    Duchêne, David A, Tong, K Jun, Foster, Charles S P, Duchêne, Sebastián, Lanfear, Robert, Ho, Simon Y W · 2020 · Molecular Biology and Evolution
  22. The metabolic network of the last bacterial common ancestor
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  23. Supporting evidence for a human reservoir of invasive non-Typhoidal Salmonella from household samples in Burkina Faso
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  24. Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period
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  30. A phylogenomic supermatrix of Galliformes (Landfowl) reveals biased branch lengths
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  31. Unicellular origin of the animal microRNA machinery
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  33. The emerging vertebrate model species for neurophysiological studies is Danionella cerebrum, new species (Teleostei: Cyprinidae)
    Britz, Ralf, Conway, Kevin W., Rüber, Lukas · 2021 · Scientific Reports
  34. Multiple losses of photosynthesis and convergent reductive genome evolution in the colourless green algae Prototheca
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  35. Six-state amino acid recoding is not an effective strategy to offset the effects of compositional heterogeneity and saturation in phylogenetic analyses
    Hernandez, Alexandra M., Ryan, Joseph F. · 2019
  36. The rise and fall of TRP-N, an ancient family of mechanogated ion channels, in Metazoa
    Schüler, Andreas, Schmitz, Gregor, Reft, Abigail, Özbek, Suat, Thurm, Ulrich, Bornberg-Bauer, Erich · 2015 · Genome Biology and Evolution
  37. Empirical and Methodological Challenges to the Model-Based Inference of Diversification Rates in Extinct Clades
    Černý, David, Madzia, Daniel, Slater, Graham J · 2021 · Systematic Biology
  38. Genomic Epidemiology of a Protracted Hospital Outbreak Caused by a Toxin A-Negative Clostridium difficile Sublineage PCR Ribotype 017 Strain in London, England
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  39. The Evolutionary Conserved γ-Core Motif Influences the Anti-Candida Activity of the Penicillium chrysogenum Antifungal Protein PAF
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  41. Origin and diversification of the plasminogen activation system among chordates
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  42. CRISPR-Cas systems in multicellular cyanobacteria
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  43. Distinct gene clusters drive formation of ferrosome organelles in bacteria
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  44. Fast and accurate metagenotyping of the human gut microbiome with GT-Pro
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  45. The evolution and spread of sulfur cycling enzymes reflect the redox state of the early Earth
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  46. Paleogenomic insights into the red complex bacteria Tannerella forsythia in Pre-Hispanic and Colonial individuals from Mexico
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  47. Source Attribution Study of Sporadic Salmonella Derby Cases in France
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  48. Eukaryotic genomes from a global metagenomic dataset illuminate trophic modes and biogeography of ocean plankton
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