Requirement of the MRN complex for ATM activation by DNA damage
Open accessAbstract
The ATM protein kinase is a primary activator of the cellular response to DNA double-strand breaks (DSBs). In response to DSBs, ATM is activated and phosphorylates key players in various branches of the DNA damage response network. ATM deficiency causes the genetic disorder ataxia-telangiectasia (A-T), characterized by cerebellar degeneration, immunodeficiency, radiation sensitivity, chromosomal instability and cancer predisposition. The MRN complex, whose core contains the Mre11, Rad50 and Nbs1 proteins, is involved in the initial processing of DSBs. Hypomorphic mutations in the NBS1 and MRE11 genes lead to two other genomic instability disorders: the Nijmegen breakage syndrome (NBS) and A-T like disease (A-TLD), respectively. The order in which ATM and MRN act in the early phase of the DSB response is unclear. Here we show that functional MRN is required for ATM activation, and consequently for timely activation of ATM-mediated pathways. Collectively, these and previous results assign to components of the MRN complex roles upstream and downstream of ATM in the DNA damage response pathway and explain the clinical resemblance between A-T and A-TLD.
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- Findingown data§ Defective phosphorylation of ATM targets in MRN-de®cient cells
All three ATM-dependent phosphorylations examined (Chk2, p53 Ser15, Hdm2 Ser395) decline progressively in A-TLD cells as Mre11 deficiency increases, regardless of Nbs1 dependence.
“Signi®cantly, all three phosphorylations were increasingly reduced in A-TLD cells in correlation with the degree of Mre11 de®ciency, regardless of their dependence on Nbs1 (Figure 4).”
Quote in the paperSubstantial claim - Findingown data§ Discussion
Bound ATM is autophosphorylated, i.e., activated.
“We noticed that, indeed, bound ATM is autophosphorylated, i.e., activated.”
Quote in the paperSubstantial claim - Findingown data§ Discussion
Not every ATM substrate requires Nbs1 for its phosphorylation.
“We showed here, however, that not every substrate of ATM requires Nbs1 for its phosphorylation.”
Quote in the paperNot a substantial claim - Findingown data§ Nuclear retention of ATM is defective in cells with MRN de®ciencies
Nuclear retention of ATM after radiomimetic damage is increasingly attenuated in NBS, A-TLD(M), and A-TLD(S) cells.
“Nuclear retention of ATM following radiomimetic damage was increasingly attenuated in NBS, A-TLD(M) and A-TLD(S) (Figure 3).”
Quote in the paperSubstantial claim - Findingcitation§ Reconstitution of the MRN complex restores ATM activation
In NBS cells reconstituted with Nbs1, the attenuation in ATM activation typical of parental NBS cells disappears.
“Indeed, the attenuation in ATM activation typical of the parental NBS cells disappeared in the reconstituted cells (Figure 6C).”
Quote in the paperSubstantial claim
- Findingown data§ Defective phosphorylation of ATM targets in MRN-de®cient cells
The response of A-TLD(S) cells is almost indistinguishable from that of A-T cells.
“Signi®cantly, the response of A-TLD(S) cells was almost indistinguishable from that of A-T cells.”
Quote in the paperSubstantial claim - Findingown data§ Defective phosphorylation of ATM targets in MRN-de®cient cells
p53 Ser15 phosphorylation is moderately and variably dependent on Nbs1.
“phosphorylation of p53 on Ser15 (Banin et al., 1998;Canman et al., 1998), which we found to be moderately and variably dependent on Nbs1 (middle panel)”
Quote in the paperSubstantial claim - Findingown data§ Discussion
ATM's binding to DNA double-strand break sites is dependent on functional Mre11.
“While the binding of the MRN complex to DSB sites is ATM-independent (Mirzoeva and Petrini, 2001), we ®nd that ATM's binding to these sites is dependent on functional Mre11, further pointing to an order of recruitment of the MRN complex and ATM to the damaged site.”
Quote in the paperSubstantial claim - Findingown data§ Defective phosphorylation of ATM targets in MRN-de®cient cells
Hdm2 Ser395 phosphorylation is Nbs1-independent.
“phosphorylation of Hdm2, the human ortholog of murine Mdm2, on Ser395 (Khosravi et al., 1999;Maya et al., 2001), which we found to be Nbs1-independent (bottom panel).”
Quote in the paperSubstantial claim - Findingcitation§ Discussion
A-TLD patients have reduced levels of Nbs1 and Rad50.
“Note the reduced levels of the Nbs1 and Rad50 in A-TLD patients(Stewart et al., 1999).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Stewart et al., 1999 source
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- Findingown data§ Discussion
Dose-dependent nuclear retention of ATM is abolished in A-TLD cells, in proportion to the degree of Mre11 deficiency.
“Dose-dependent nuclear retention of ATM is abrogated in A-TLD cells in correlation with the extent of Mre11 de®ciency.”
Quote in the paperSubstantial claim - Findingown data§ Discussion
ATM retention is impaired to an intermediate degree in the NBS cell line.
“Note intermediate impairment of ATM retention in the NBS cell line.”
Quote in the paperNot a substantial claim - Findingown data§ Discussion
p53 phosphorylation on Ser15 is moderately retarded in NBS cells.
“A moderate retardation of this phosphorylation is noticed in NBS cells”
Quote in the paperNot a substantial claim - Findingown data§ Discussion
Hdm2 phosphorylation occurs at a normal rate in NBS cells.
“Hdm2 phosphorylation occurs at a normal rate in NBS cells”
Quote in the paperNot a substantial claim - Findingown data§ Discussion
All other genotypes show variably low responses.
“and the variably low responses of all other genotypes.”
Quote in the paperNot a substantial claim - Findingown data§ Discussion
Chk2 phosphorylation is absent in A-TLD(S) cells.
“the lack of phosphorylation in A-TLD(S) cells.”
Quote in the paperSubstantial claim - Findingown data§ Discussion
The p53 Ser15 phosphorylation response is attenuated in the A-TLD variants.
“the response is attenuated in the A-TLD variants.”
Quote in the paperSubstantial claim - Findingown data§ Discussion
At the dose used, Chk2 phosphorylation depends on Nbs1.
“Note Nbs1 dependence of this phosphorylation at the treatment dose used in this experiment”
Quote in the paperSubstantial claim - Findingcitation§ Discussion
Ectopic expression of Nbs1 restores ATM activation in NBS cells.
“ATM activation in NBS cells reconstituted by ectopic expression of Nbs1 (Tauchi et al., 2001).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Tauchi et al., 2001 source
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- Findingown data§ Discussion
Hdm2 phosphorylation is abolished in A-TLD(S) cells.
“and is abolished in A-TLD(S) cells.”
Quote in the paperSubstantial claim - Findingown data§ Discussion
Ectopic expression of Mre11 restores damage-induced ATM activation in A-TLD(S) cells.
“and reconstitution of damage-induced ATM activation.”
Quote in the paperSubstantial claim - Findingown data§ Discussion
ATM activation is defective in cells transduced with the Mre11-3 mutant.
“Note the defective ATM activation in cells transduced with the Mre11-3 mutant.”
Quote in the paperSubstantial claim - Findingown data§ Discussion
Ectopic expression of Mre11 in A-TLD(S) cells restores endogenous Rad50 and Nbs1 levels.
“Note reconstitution of endogenous Rad50 and Nbs1 levels following ectopic expression of Mre11”
Quote in the paperSubstantial claim - Findingown data§ Discussion
Hdm2 phosphorylation is moderately impaired in A-TLD(M) cells.
“is moderately impaired in A-TLD(M) cells”
Quote in the paperNot a substantial claim - Findingown data§ Discussion
Nuclease-defective Mre11 cannot fully restore ATM activation in A-TLD(S) cells.
“Inability of nuclease-defective Mre11 to fully reconstitute ATM activation in A-TLD(S) cells.”
Quote in the paperSubstantial claim - Findingown data§ Discussion
A-T and A-TLD(S) cells show a similar lack of response.
“Note the similar lack of response in A-T and A-TLD(S) cells”
Quote in the paperSubstantial claim - Premisecitation§ Introduction
The MRN complex binds to DNA double-strand break sites immediately after induction, independently of ATM.
“The MRN complex adheres to the sites of DSBs immediately following their induction, and this process is independent of ATM (Mirzoeva and Petrini, 2001;Petrini et al., 2001).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Mirzoeva and Petrini, 2001 source
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- cites Petrini et al., 2001
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- Premisecitation§ Requirement of the MRN complex for ATM activation by DNA damage
At low damage levels, Nbs1 facilitates ATM-mediated phosphorylation of several ATM substrates, including Chk2, SMC1, Chk1, and Mre11.
“Furthermore, at low damage levels, Nbs1 appears to facilitate ATM-mediated phosphorylation of several other ATM substrates, such as the checkpoint kinase Chk2 (Buscemi et al., 2001;Girard et al., 2002;Lee et al., 2003), the chromatin remodeling protein SMC1 (Kim et al., 2002b;Yazdi et al., 2002), Chk1 (Gatei et al., 2003), and Mre11 itself (Dong et al., 1999).”
Quote in the paperNot a substantial claim0 of 3 sources checked - Premisecitation§ Abstract
ATM acts as the main initiator of the cellular reaction to DNA double-strand breaks.
“The ATM protein kinase is a primary activator of the cellular response to DNA double-strand breaks (DSBs).”
- Also stated in: § Introduction · plain
“The nuclear protein kinase ATM is regarded as the primary activator of this network (Shiloh, 2003).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Shiloh, 2003 source
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- Also stated in: § Introduction · plain
- Premisecitation§ Requirement of the MRN complex for ATM activation by DNA damage
ATM phosphorylates Nbs1 and Mre11 in response to DNA double-strand breaks.
“Direct functional links between ATM and components of the MRN complex were evidenced by ATM-mediated phosphorylation of Nbs1 and Mre11 in response to DSBs (Gatei et al., 2000;Lim et al., 2000;Wu et al., 2000;Zhao et al., 2000;Stewart et al., 2001;Yuan et al., 2002a,b).”
Quote in the paperSubstantial claim0 of 3 sources checked - Premisecitation§ Discussion
SMC1 accumulates at damage sites through a mechanism that needs MRN but not ATM.
“Worthy of note, the chromatin remodeling protein SMC1, itself an ATM substrate, is also recruited to damaged sites in an MRN-dependent, ATMindependent manner (Kim et al., 2002a), further indicating the requirement for MRN activity for the recruitment of damage response players to the damaged sites.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Kim et al., 2002a
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- Premisecitation§ Reconstitution of the MRN complex restores ATM activation
The Mre11-3 mutant has two amino acid substitutions that reduce its endonuclease activity.
“The mutant Mre11-3 contains two amino acid substitutions (H129L/D130V) that alter its phosphodiesterase domain, thereby reducing its endonuclease activity (Stracker et al., 2002).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Stracker et al., 2002 source
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- Premisecitation§ Discussion
In A-T cells lacking ATM, damage response pathways eventually activate via other kinases such as ATR.
“In A-T cells that completely lack ATM activity, the damage response pathways eventually get activated because of the action of other kinases, such as ATR, which belongs to the same protein family as ATM (Abraham, 2001;Shiloh, 2001;Shiloh and Kastan, 2001).”
Quote in the paperSubstantial claim0 of 3 sources checked - Premisecitation§ Discussion
Nbs1 phosphorylation is not required for recruitment of MRN to DNA double-strand break sites.
“However, Nbs1 phosphorylation is not required for the recruitment of MRN to the DSB sites (Lukas et al., 2003), emphasizing the distinction between the sensor role of MRN and the downstream roles of the phosphorylated Nbs1.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Lukas et al., 2003 source
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- Interpretationreasoning§ Discussion
Progressive cerebellar degeneration in A-T may arise primarily from a defect in the DNA damage response.
“They also suggest that the progressive cerebellar degeneration in A-T, which is the prominent and most devastating symptom of the disease, may result primarily from the defect in the DNA damage response.”
Quote in the paperSubstantial claim - Premisecitation§ Discussion
For some ATM substrates, Nbs1 dependence is evident after low radiation doses but weaker after high doses.
“A recent example of this notion concerns the dependence of the phosphorylation of certain ATM substrates on Nbs1, which is clearly observed at low radiation doses but less so at high doses (Buscemi et al., 2001;Fernandez-Capetillo et al., 2002;Girard et al., 2002; T.Uziel, unpublished observations).”
Quote in the paperSubstantial claim0 of 3 sources checked - Premisecitation§ Discussion
The dependence of one DNA damage response pathway on another may differ at different levels of damage.
“Because of the complex nature of this response and the redundancy of certain pathways, the dependence of one pathway on the other may differ considerably at different levels of damage (Fernandez-Capetillo et al., 2002;Girard et al., 2002;Wang et al., 2002).”
Quote in the paperSubstantial claim0 of 3 sources checked - Interpretationown data§ Discussion
The clinical presentation of A-T can result from defective ATM activation alone, without ATM absence or complete inactivation as in classical A-T.
“The A-TLD phenotype and our results indicate that the clinical presentation of A-T can be caused merely by defective activation of ATM, and not necessarily by its absence or complete inactivation as in classical A-T patients.”
Quote in the paperSubstantial claim - Study design and conductcitation§ Discussion
Damage-induced nuclear retention of ATM can be measured as increased resistance of ATM to detergent extraction.
“Biochemical demonstration of damage-induced nuclear retention of ATM, re¯ected as increased resistance of this protein to detergent extraction.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Andegeko et al., 2001 source
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- Interpretationown data§ Discussion
The extraction-resistant fraction of ATM corresponds to ATM bound at DNA double-strand break sites in a dose-dependent manner.
“The extraction-resistant fraction of ATM (`retained ATM') represents a portion of ATM that adheres to DSB sites in a dose-dependent manner (see top panel representing a normal control).”
Quote in the paperSubstantial claim - Interpretationnone given§ Discussion
The MRN complex is required for the initial processing of DNA damage.
“The MRN complex is essential for the initial damage processing.”
Quote in the paperSubstantial claim
- May combine two claims. 28
- The quote only partly states this claim. 1
- Classified as probably not a substantial claim. 12
May combine two claims.
Findingown data§ Defective phosphorylation of ATM targets in MRN-de®cient cellsQuantitation of the ATM phosphorylation motif response is significantly impaired in A-TLD(M), abolished in A-TLD(S), and variably low in NBS.
“Quantitation of this response indicated that it is signi®cantly impaired in A-TLD(M) cells and abolished in A-TLD(S) cells, while being variably low in NBS cells (Figure 5B).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ Reconstitution of the MRN complex restores ATM activationIn A-TLD(S) cells, Mre11 expression restores normal amounts and nuclear co-localization of Rad50 and Nbs1, indicating reassembly of the nuclear MRN complex.
“Mre11 expression reconstituted the normal levels and nuclear co-localization of Rad50 and Nbs1 (Figure 6A), suggesting reassembly of nuclear MRN complex.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ ATM activation is defective in cells with MRN de®cienciesAfter NCS, ATM autophosphorylation on Ser1981 is retarded in NBS cells, more moderately reduced in A-TLD(M), and most severely affected in A-TLD(S).
“Dose response and time course experiments (Figure 2) indicated that ATM activation was indeed retarded in NBS cells, was more pronouncedly moderate in A-TLD(M), and most severely affected in A-TLD(S).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ ATM activation is defective in cells with MRN de®cienciesIn vitro NCS-induced ATM kinase activity is moderately reduced in A-TLD(M) cells, abolished in A-TLD(S) cells, and variable/not significantly different from wild-type in NBS cells.
“We noticed that the elevation in ATM's catalytic activity following NCS treatment was moderately reduced in A-TLD(M) cells and completely abolished in A-TLD(S) cells, while NBS cells exhibited variable extents of reduction in ATM activation, which on the average did not differ signi®cantly from those of wild-type cells (data not shown).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ Reconstitution of the MRN complex restores ATM activationATM activation and downstream substrate phosphorylation are reconstituted after Mre11 expression in A-TLD(S) cells.
“Importantly, ATM activation (Figure 6B) and phosphorylation of downstream substrates (not shown) were subsequently reconstituted.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ Nuclear retention of ATM is defective in cells with MRN de®cienciesBoth retained and soluble ATM fractions contain activated ATM molecules.
“Indeed, we noticed that both of the retained and soluble ATM fractions contained activated ATM molecules (Supplementary ®gure 1, available at The EMBO Journal Online).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown data§ Defective phosphorylation of ATM targets in MRN-de®cient cellsAfter NCS exposure, an antibody recognizing ATM phosphorylation motifs produces a strong nuclear signal that depends on ATM in multiple cell lines.
“Upon NCS treatment, this antibody reveals a strong, ATM-dependent nuclear response in a variety of cell lines (Figure 5A).”
Quote in the paperSubstantial claimMay combine two claims. The quote only partly states this claim.
Findingown data§ DiscussionThe Mre11-3 mutant restores endogenous Rad50 and Nbs1 levels and nuclear localization.
“Note reconstitution of endogenous Rad50 and Nbs1 levels and nuclear localization.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ DiscussionThe nuclear retention process is impaired to different degrees in A-TLD and NBS cells, most severely in the severe A-TLD variant.
“This process is impaired to different extents in A-TLD and NBS cells, most seriously in the severe A-TLD variant.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ DiscussionChk2 phosphorylation is delayed and reduced in A-TLD(M) cells.
“the delayed and reduced phosphorylation of Chk2 in A-TLD(M) cells”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ DiscussionIn untreated cells most nuclear ATM is extracted and washed out, whereas NCS treatment makes a significant portion of nuclear ATM resistant to extraction.
“In untreated cells most of the nuclear content of ATM is extracted and washed out, while prior NCS treatment (50 ng/ ml) renders a signi®cant portion of nuclear ATM extraction-resistant.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown data§ DiscussionThe phosphorylation response is confined to the nucleus.
“Phase contrast images of the cells indicate that this response is con®ned to the nucleus.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown data§ DiscussionThirty minutes after NCS treatment, wild-type cells show a vigorous response while A-T cells show barely changed diffuse background staining.
“Thirty minutes following NCS treatment, a vigorous response is observed in wild-type cells while the diffuse background staining in A-T cells is barely changed.”
Quote in the paperSubstantial claimMay combine two claims.
Premisecitation§ AbstractHypomorphic mutations in NBS1 and MRE11 cause Nijmegen breakage syndrome and A-T like disease, respectively.
“Hypomorphic mutations in the NBS1 and MRE11 genes lead to two other genomic instability disorders: the Nijmegen breakage syndrome (NBS) and A-T like disease (A-TLD), respectively.”
Quote in the paperSubstantial claim0 of 3 sources checkedClassified as probably not a substantial claim.
Premisecitation§ IntroductionThe MRN complex participates in initial processing of DNA double-strand breaks through nuclease activity and DNA binding.
“The MRN complex is involved in the initial processing of DSBs due to its nuclease activity and DNA binding capability (Petrini et al., 2001;D'Amours and Jackson, 2002).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Petrini et al., 2001
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- cites D'Amours and Jackson, 2002 source
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Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisecitation§ AbstractATM loss leads to ataxia-telangiectasia, marked by cerebellar degeneration, immune deficiency, radiosensitivity, chromosome instability, and a predisposition to cancer.
“ATM de®ciency causes the genetic disorder ataxia-telangiectasia (A-T), characterized by cerebellar degeneration, immunode®ciency, radiation sensitivity, chromosomal instability and cancer predisposition.”
Quote in the paperNot a substantial claim0 of 2 sources checkedMay combine two claims.
Interpretationown data§ Reconstitution of the MRN complex restores ATM activationMre11's nuclease function is needed for correct ATM activation, and assembling the MRN complex alone does not suffice.
“Interestingly, expression of the the Mre11-3 mutant protein in A-TLD(S) cells seemed to reconstitute nuclear MRN complex similarly to wild-type Mre11(Figure 7A), but failed to fully restore damage-induced ATM activation (Figure 7B).”
- Also stated in: § Reconstitution of the MRN complex restores ATM activation · hedged
“This result suggested to us that the mere assembly of the MRN complex is not suf®cient for proper ATM activation, and its nuclease activity, which resides in the Mre11 protein, is speci®cally required for this process.”
Quote in the paperSubstantial claim- Also stated in: § Reconstitution of the MRN complex restores ATM activation · hedged
Classified as probably not a substantial claim.
Premisecitation§ ATM activation is defective in cells with MRN de®cienciesATM activation involves intermolecular autophosphorylation on Ser1981.
“Bakkenist and Kastan (2003) have recently shown, however, that the damage-induced increase in ATM's kinase activity in vitro is just a modest re¯ection of the actual activation of ATM in cells, and demonstrated that this activation involves intermolecular autophosphorylation of ATM on Ser1981.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Bakkenist and Kastan, 2003 source
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Interpretationown data§ AbstractFunctional MRN complex in the nucleus is required for proper ATM activation and for timely activation of ATM-mediated pathways.
“Here we show that functional MRN is required for ATM activation, and consequently for timely activation of ATM-mediated pathways.”
- Also stated in: § Reconstitution of the MRN complex restores ATM activation · plain
“We concluded from these results that the presence of functional MRN complex in the nucleus is required for proper ATM activation.”
- Also stated in: § Discussion · plain
“We conclude that functional MRN complex is necessary for proper ATM-mediated response to DSBs (Figure 8).”
Quote in the paperSubstantial claim- Also stated in: § Reconstitution of the MRN complex restores ATM activation · plain
Probably not a substantial claim: may not pass S3 (load-bearing).
Premisecitation§ DiscussionATM-mediated phosphorylation of Chk2 occurs specifically and exclusively at damaged sites.
“The demonstration of ATM-mediated phosphorylation of Chk2 speci®cally and exclusively at the damaged sites (Lukas et al., 2003) attests to the importance of the binding of ATM to these sites, which is re¯ected in the retention phenomenon (Andegeko et al., 2001).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Lukas et al., 2003 source
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Interpretationown data§ Nuclear retention of ATM is defective in cells with MRN de®cienciesThe ordering of genotypes by increasing effect on ATM activation and on ATM nuclear retention is similar, suggesting the two phenomena are parallel facets of ATM's DNA damage response.
“Interestingly, the order in which the different genotypes increasingly affected ATM activation and retention was similar for both phenomena, suggesting that they re¯ect two parallel facets of ATM's response to DNA damage.”
Quote in the paperSubstantial claimMay combine two claims.
Premisecitation§ DiscussionIn budding yeast, damage-induced activation of Tel1p, phosphorylation of its downstream targets, and activation of cell cycle checkpoints depend on functional Mre11/Rad50/Xrs2 complex, specifically on Mre11 nuclease activity.
“Indeed, in the budding yeast, damage-induced activation of ATM's ortholog, Tel1p, subsequent phosphorylation of its downstream targets, and activation of pertinent pathways such as the cell cycle checkpoints are dependent on functional Mre11/Rad50/ Xrs2 complex (the yeast ortholog of the mammalian MRN complex)Ðspeci®cally on the nuclease activity of Mre11 (D'Amours and Jackson, 2001;Grenon et al.,”
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Study design and conductown data§ Defective phosphorylation of ATM targets in MRN-de®cient cellsThis antibody recognizes phosphorylated forms of certain established ATM targets, including p53 and Chk2, plus other substrates being studied.
“It detects the phosphorylated forms of some known ATM substrates, such as p53 and Chk2, and several other substrates currently under investigation in our laboratory.”
Quote in the paperSubstantial claimMay combine two claims.
Study design and conductcitation§ Reconstitution of the MRN complex restores ATM activationhTERT immortalization does not alter phenotypic characteristics associated with defective DNA damage response of A-T cells and A-TLD(M) cells.
“It was previously shown that hTERT immortalization does not alter the phenotypic characteristics associated with the defective DNA damage response of A-T cells (Wood et al., 2001) and A-TLD(M) cells (Stracker et al., 2002).”
Quote in the paperSubstantial claim0 of 2 sources checkedMay combine two claims.
Interpretationreasoning§ DiscussionVaried clinical phenotypes from Nbs1 versus Mre11 defects might arise from distinct functions of each protein and from how much the whole MRN complex is disabled by the particular hypomorphic mutation.
“The different phenotypes associated with genetic Nbs1 and Mre11 de®ciencies may re¯ect speci®c roles of each of them in the damage response, as well as the extent to which the function of the entire MRN complex is impaired by the corresponding hypomorphic mutations.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Premisecitation§ DiscussionPhosphorylated Nbs1 plays a separate role in activation of specific cell cycle checkpoints.
“Moreover, phosphorylated Nbs1 plays a separate role in the activation of speci®c cell cycle checkpoints (Buscemi et al., 2001;Lim et al., 2000).”
Quote in the paperNot a substantial claim0 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
Interpretationcitation§ DiscussionEarly DNA damage response events might not form a simple linear hierarchy with one fixed place per protein.
“The sequence of events at the early stage of the DNA damage response may not necessarily be a simple hierarchy in which each protein has a single position in the damage signaling cascade (Bradbury and Jackson, 2003;Petrini and Stracker, 2003).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Bradbury and Jackson, 2003 source
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- cites Petrini and Stracker, 2003
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Interpretationreasoning§ DiscussionBecause the three core MRN proteins physically associate and cooperate functionally, losing even part of one can abolish the complex's activities.
“Due to the physical association and functional cooperation between the three core components of the MRN complex, even partial loss of one of them leads to abrogation of the complex's functions.”
Quote in the paperSubstantial claimClassified as probably not a substantial claim.
Premisecitation§ Defective phosphorylation of ATM targets in MRN-de®cient cellsATM targets serine or threonine residues that are followed by glutamine, known as SQ/TQ motifs.
“ATM phosphorylates serine or threonine residues followed by glutamine (`SQ' or `TQ' motifs) (Kim et al., 1999;O'Neill et al., 2000).”
Quote in the paperSubstantial claim0 of 2 sources checkedMay combine two claims.
Premisecitation§ Reconstitution of the MRN complex restores ATM activationEctopic Nbs1 expression in NBS cells leads to reassembly of nuclear MRN complex and restores ATM-mediated Chk2 phosphorylation.
“In these cells too, ectopic expression of Nbs1 leads to reassembly of the MRN complex in the nucleus (Tauchi et al., 2001) and restores ATM-mediated Chk2 phosphorylation (Buscemi et al., 2001).”
Quote in the paperSubstantial claim0 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisecitation§ DiscussionThe MRN complex forms two types of nuclear foci in response to DNA double-strand breaks: a rapid ATM-independent type and a prolonged ATM-dependent type.
“Indeed, in response to DSBs, the MRN complex forms two types of nuclear foci: the ®rst is rapid and ATM-independent and probably re¯ects its sensor mode of action, while the second is ATM-dependent and prolonged and probably corresponds to MRN's downstream roles (Mirzoeva and Petrini, 2001;Mirzoeva and Petrini, 2003).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Mirzoeva and Petrini, 2001 source
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- cites Mirzoeva and Petrini, 2003
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Interpretationnone given§ DiscussionLow treatment doses are more likely to reflect physiological conditions and to explain human phenotypes.
“Presumably, however, the low treatment doses re¯ect more realistic physiological situations and better explain human phenotypes.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Interpretationreasoning§ DiscussionDifferences in treatment protocols may explain why A-TLD(S) cells showed an A-T-like phenotype in this study but a moderate cellular phenotype in other reports.
“Thus, different treatment protocols may account for the discrepancy between the A-T-like phenotype of A-TLD(S) cells observed by us and the moderate cellular phenotype reported for these cells by Stewart et al. (1999) and Falck et al. (2002).”
Quote in the paperNot a substantial claim0 of 2 sources checkedMay combine two claims.
Interpretationreasoning§ DiscussionPhosphorylated Nbs1 promotes phosphorylation of some ATM substrates and contributes to cell cycle checkpoint activation.
“Phosphorylated Nbs1 facilitates the phosphorylation of certain ATM substrates and plays a role in the activation of cell cycle checkpoint.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationreasoning§ DiscussionProcessed DNA lesions recruit and activate ATM, which then phosphorylates substrates including Nbs1 and Mre11.
“Processed DNA lesions lead to the recruitment and activation of ATM, which in turn phosphorylates its substrates, among them Nbs1 and Mre11.”
Quote in the paperSubstantial claimMay combine two claims.
Premisecitation§ DiscussionPhosphorylation of Hdm2 on Ser395 abolishes its immunoreactivity with monoclonal antibody 2A10, so it appears as loss of the Hdm2 band on immunoblots.
“This phosphorylation abolishes the immunoreactivity of Hdm2 with the monoclonal antibody 2A10 and is therefore expressed as loss of the Hdm2 band on immunoblots(Khosravi et al., 1999).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Khosravi et al., 1999 source
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Interpretationcitation§ DiscussionA constitutive damage response is occasionally seen in cells with defective damage response and reflects elevated basal levels of DNA damage.
“This constitutive damage response is occasionally observed in cells with defective damage response and represents elevated basal levels of DNA damage(Gatei et al., 2001;Kamsler et al., 2001).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Gatei et al., 2001 source
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- cites Kamsler et al., 2001
Not checked in the free run.
The paper relies on this without support.
It is not known whether ATM or MRN acts first after DSB formation.
“The order in which ATM and the MRN complex act in the early phase of the DSB response is unclear.”
The paper relies on this without support.
A-T and A-TLD are highly similar clinically, while NBS does not share cerebellar degeneration.
“Importantly, while A-T and A-TLD are highly similar, NBS does not share the cerebellar degeneration typical of these diseases.”
The paper relies on this without support.
A dose of 50 ng/ml NCS is approximately equivalent to 2 Gy of ionizing radiation.
“a dose of 50 ng/ml of NCS is roughly equivalent to 2 Gy of ionizing radiation”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Nbs1 regulates ATM activation.
“Nbs1 regulates ATM activation (25, 47).”
From Mdm2 Promotes Genetic Instability and Transformation Independent of p53 (2008) · cites this paper as [47]
Following DNA damage, Nbs1 participates in activating ATM, a kinase responsible for signaling DNA damage.
“Following DNA damage, Nbs1 participates in activating ATM, a kinase responsible for signaling DNA damage (25, 47).”
From Mdm2 Promotes Genetic Instability and Transformation Independent of p53 (2008) · cites this paper as [47]
Nbs1 regulates and is regulated by ATM, and ATM signals DNA damage.
“Since Nbs1 regulates and is regulated by ATM and since ATM signals DNA damage (25, 47, 54), we sought to establish whether the delay in DNA repair induced by Mdm2 required ATM.”
From Mdm2 Promotes Genetic Instability and Transformation Independent of p53 (2008) · cites this paper as [47]
The MRN complex recognizes resulting DSBs and facilitates ATM recruitment and activation.
“The Mre11/Rad50/Nbs1 (MRN) complex recognizes the resulting DSBs and facilitates ATM recruitment and activation [20–23].”
From ATR- and ATM-Mediated DNA Damage Response Is Dependent on Excision Repair Assembly during G1 but Not in S Phase of Cell Cycle (2016) · cites this paper as [23]
The MRN complex is involved in ataxia-telangiectasia-like disease and Nijmegen breakage syndrome and is required for ATM activation in the double-strand break response.
“The MRN complex (Mre11-Rad50-Nbs1) is involved in ataxia-telangiectasia like disease and Nijmegen breakage syndrome and is required for ATM activation in DSB response [52–54].”
From Functional interplay between ATM/ATR-mediated DNA damage response and DNA repair pathways in oxidative stress (2014) · cites this paper as [52]
The MRN complex senses and processes double-strand DNA breaks and activates downstream DNA damage response proteins such as ATM.
“The MRN complex is important in sensing and processing double-strand DNA breaks, as well as activating downstream DNA damage response proteins that mediate or signal for DNA repair, such as the DNA damage-induced kinase ATM.9–13”
From Mdmx promotes genomic instability independent of p53 and Mdm2 (2015) · cites this paper as [11]
Full activation of ATM after DNA double-strand breaks requires Nbs1 of the MRN complex.
“Full activation of ATM following DNA double-strand breaks requires Nbs1 of the MRN complex.9,11–13”
From Mdmx promotes genomic instability independent of p53 and Mdm2 (2015) · cites this paper as [11]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
Severe A-TLD fibroblast line has two identifiers
MinorThe cell-line list identifies the severe A-TLD fibroblasts as D6807, but the subsequent immortalization method identifies the severe A-TLD line as D6087. The text does not clarify whether these are different lines or a transposed identifier.
“A-TLD(S) (D6807) ®broblasts (Stewart et al., 1999) were obtained from A.M.Taylor”
“The A-TLD(S) D6087 ®broblast line was immortalized by transducing the cells with a retroviral vector expressing the catalytic subunit of human telomerase (hTERT)”
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Cell-cycle checkpoints and cancer
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DNA damage responses to oxidative stress
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Checking on DNA damage in S phase
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The MRE11 complex: starting from the ends
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A role for the Tip60 histone acetyltransferase in the acetylation and activation of ATM
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Initiating Cellular Stress Responses
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The Mre11 complex is required for ATM activation and the G2/M checkpoint
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Histone H3 methylation links DNA damage detection to activation of the tumour suppressor Tip60
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- Authors
- Uziel, T., Lerenthal, Y., Moyal, L., Andegeko, Y., Mittelman, L., & Shiloh, Y.
- Affiliations
- Tel Aviv University (IL)
- Corresponding author
- Shiloh, Yosef
- Venue
- The EMBO Journal
- Published
- 2003-10-15
- Volume
- 22
- Issue
- 20
- Pages
- 5612-5621
- ISSN
- 0261-4189 (ISSN-L)
- 1460-2075
- PMC
- PMC213795
- OpenAlex
- W2045526190
- Cited by
- 1,075
- References
- 68
- Citations by year
- 2026: 10 · 2025: 22 · 2024: 32 · 2023: 29 · 2022: 44 · 2021: 37 · 2020: 49 · 2019: 36 · 2018: 45 · 2017: 39 · 2016: 36 · 2015: 45 · 2014: 50 · 2013: 54 · 2012: 50
- FWCI
- 23.83
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- The EMBO Journal (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health
- National Institute of Neurological Disorders and Stroke (R01NS031763, R01NS31763)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Effects of Radiation Exposure
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
- Keywords
- ATM kinase activation, MRN complex, MRE11, RAD50, NBS1, DNA double-strand breaks, DNA damage response, ataxia telangiectasia, Nijmegen breakage syndrome, ataxia-telangiectasia-like disorder, genomic instability, DNA end processing
- MeSH terms
- MRE11 Homologue Protein, Ataxia Telangiectasia, Cell Line, Cell Survival, DNA Damage, DNA-Binding Proteins, Gene Expression Regulation, Humans, Nuclear Proteins, Phosphorylation, Reference Values, Protein Serine-Threonine Kinases, Cell Cycle Proteins, Tumor Suppressor Proteins, Saccharomyces cerevisiae Proteins, Ataxia Telangiectasia Mutated Proteins
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