Molecular architecture of the mammalian circadian clock
Open accessAbstract
Circadian clocks coordinate physiology and behavior with the 24h solar day to provide temporal homeostasis with the external environment. The molecular clocks that drive these intrinsic rhythmic changes are based on interlocked transcription/translation feedback loops that integrate with diverse environmental and metabolic stimuli to generate internal 24h timing. In this review we highlight recent advances in our understanding of the core molecular clock and how it utilizes diverse transcriptional and post-transcriptional mechanisms to impart temporal control onto mammalian physiology. Understanding the way in which biological rhythms are generated throughout the body may provide avenues for temporally directed therapeutics to improve health and prevent disease.
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The SCN molecular clock comprises a set of transcriptional-translational feedback loops that drive rhythmic 24-h expression of the core canonical clock components.
“The SCN molecular clock comprises a set of transcriptional–translational feedback loops that drive rhythmic 24-h expression of the core canonical clock components38,39.”
From Circadian rhythm disruption and mental health (2020) · cites this paper as [38]
The mammalian transcriptional-translational feedback loop model consists of multiple interlocking loops.
“The mammalian TTFL model consists of multiple interlocking loops that are described in detail elsewhere (19).”
From Circadian rhythms, metabolism, and chrononutrition in rodents and humans (2016) · cites this paper as [19]
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Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences
Raj, A., & van Oudenaarden, A. (2008) · Cell · doi:10.1016/j.cell.2008.09.050 · Cited by 2,593 · see citing works
Dibner, C., Schibler, U., & Albrecht, U. (2010) · Annual Review of Physiology · doi:10.1146/annurev-physiol-021909-135821 · Cited by 2,421 · see citing works
Yoo, S.-H., Yamazaki, S., Lowrey, P. L., Shimomura, K., Ko, C. H., Buhr, E. D., Siepka, S. M., Hong, H.-K., Oh, W. J., Yoo, O. J., et al. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0308709101 · Cited by 2,329 · see citing works
Self-citationCoordinated Transcription of Key Pathways in the Mouse by the Circadian Clock
Panda, S., Antoch, M. P., Miller, B. H., Su, A. I., Schook, A. C., Straume, M., Schultz, P. G., Kay, S. A., Takahashi, J. S., & Hogenesch, J. B. (2002) · Cell · doi:10.1016/s0092-8674(02)00722-5 · Cited by 2,272 · see citing works
Self-citationPreitner, N., Damiola, F., Luis-Lopez-Molina, Zakany, J., Duboule, D., Albrecht, U., & Schibler, U. (2002) · Cell · doi:10.1016/s0092-8674(02)00825-5 · Cited by 2,198 · see citing works
Transplanted Suprachiasmatic Nucleus Determines Circadian Period
Ralph, M. R., Foster, R. G., Davis, F. C., & Menaker, M. (1990) · Science · doi:10.1126/science.2305266 · Cited by 1,853 · see citing works
Molecular components of the mammalian circadian clock
Ko, C. H., & Takahashi, J. S. (2006) · Human Molecular Genetics · doi:10.1093/hmg/ddl207 · Cited by 1,657 · see citing works
Self-citationDisruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes
Marcheva, B., Ramsey, K. M., Buhr, E. D., Kobayashi, Y., Su, H., Ko, C. H., Ivanova, G., Omura, C., Mo, S., Vitaterna, M. H., et al. (2010) · Nature · doi:10.1038/nature09253 · Cited by 1,525 · see citing works
Self-citationExtensive and divergent circadian gene expression in liver and heart
Storch, K.-F., Lipan, O., Leykin, I., Viswanathan, N., Davis, F. C., Wong, W. H., & Weitz, C. J. (2002) · Nature · doi:10.1038/nature744 · Cited by 1,509 · see citing works
Transcriptional architecture and chromatin landscape of the core circadian clock in mammals
Koike, N., Yoo, S.-H., Huang, H.-C., Kumar, V., Lee, C., Kim, T.-K., & Takahashi, J. S. (2012) · Science · doi:10.1126/science.1226339 · Cited by 1,464 · see citing works
Self-citationAn h <i>Per2</i> Phosphorylation Site Mutation in Familial Advanced Sleep Phase Syndrome
Toh, K. L., Jones, C. R., He, Y., Eide, E. J., Hinz, W. A., Virshup, D. M., Ptáček, L. J., & Fu, Y.-H. (2001) · Science · doi:10.1126/science.1057499 · Cited by 1,460 · see citing works
Nakahata, Y., Kaluzova, M., Grimaldi, B., Sahar, S., Hirayama, J., Chen, D., Guarente, L. P., & Sassone-Corsi, P. (2008) · Cell · doi:10.1016/j.cell.2008.07.002 · Cited by 1,427 · see citing works
Circadian Control of the NAD <sup>+</sup> Salvage Pathway by CLOCK-SIRT1
Nakahata, Y., Sahar, S., Astarita, G., Kaluzova, M., & Sassone-Corsi, P. (2009) · Science · doi:10.1126/science.1170803 · Cited by 1,198 · see citing works
Kondratov, R. V., Kondratova, A. A., Gorbacheva, V. Y., Vykhovanets, O. V., & Antoch, M. P. (2006) · Genes & Development · doi:10.1101/gad.1432206 · Cited by 1,188 · see citing works
Circadian Clock Feedback Cycle Through NAMPT-Mediated NAD <sup>+</sup> Biosynthesis
Ramsey, K. M., Yoshino, J., Brace, C. S., Abrassart, D., Kobayashi, Y., Marcheva, B., Hong, H.-K., Chong, J. L., Buhr, E. D., Lee, C., et al. (2009) · Science · doi:10.1126/science.1171641 · Cited by 1,126 · see citing works
Self-citationA Functional Genomics Strategy Reveals Rora as a Component of the Mammalian Circadian Clock
Sato, T. K., Panda, S., Miraglia, L. J., Reyes, T. M., Rudic, R. D., McNamara, P., Naik, K. A., FitzGerald, G. A., Kay, S. A., & Hogenesch, J. B. (2004) · Neuron · doi:10.1016/j.neuron.2004.07.018 · Cited by 1,115 · see citing works
Physiological significance of a peripheral tissue circadian clock
Lamia, K. A., Storch, K.-F., & Weitz, C. J. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0806717105 · Cited by 1,048 · see citing works
Regulation of circadian behaviour and metabolism by REV-ERB-α and REV-ERB-β
Cho, H., Zhao, X., Hatori, M., Yu, R. T., Barish, G. D., Lam, M. T., Chong, L.-W., DiTacchio, L., Atkins, A. R., Glass, C. K., et al. (2012) · Nature · doi:10.1038/nature11048 · Cited by 1,037 · see citing works
Mammalian circadian biology: elucidating genome-wide levels of temporal organization
Lowrey, P. L., & Takahashi, J. S. (2004) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev.genom.5.061903.175925 · Cited by 976 · see citing works
Self-citationMammalian genes are transcribed with widely different bursting kinetics
Suter, D. M., Molina, N., Gatfield, D., Schneider, K., Schibler, U., & Naef, F. (2011) · Science · doi:10.1126/science.1198817 · Cited by 927 · see citing works
Temperature as a Universal Resetting Cue for Mammalian Circadian Oscillators
Buhr, E. D., Yoo, S.-H., & Takahashi, J. S. (2010) · Science · doi:10.1126/science.1195262 · Cited by 917 · see citing works
Self-citationDifferential Functions of mPer1, mPer2, and mPer3 in the SCN Circadian Clock
Bae, K., Jin, X., Maywood, E. S., Hastings, M. H., Reppert, S. M., & Weaver, D. R. (2001) · Neuron · doi:10.1016/s0896-6273(01)00302-6 · Cited by 900 · see citing works
Circadian Regulator CLOCK Is a Histone Acetyltransferase
Doi, M., Hirayama, J., & Sassone‐Corsi, P. (2006) · Cell · doi:10.1016/j.cell.2006.03.033 · Cited by 890 · see citing works
Functional consequences of a CKIδ mutation causing familial advanced sleep phase syndrome
Xu, Y., Padiath, Q. S., Shapiro, R. E., Jones, C. R., Wu, S. C., Saigoh, N., Saigoh, K., Ptáček, L. J., & Fu, Y.-H. (2005) · Nature · doi:10.1038/nature03453 · Cited by 861 · see citing works
Regulation of circadian behaviour and metabolism by synthetic REV-ERB agonists
Solt, L. A., Wang, Y., Banerjee, S., Hughes, T., Kojetin, D. J., Lundåsen, T., Shin, Y., Liu, J., Cameron, M. D., Noël, R., et al. (2012) · Nature · doi:10.1038/nature11030 · Cited by 835 · see citing works
Self-citationA circadian rhythm orchestrated by histone deacetylase 3 controls hepatic lipid metabolism
Feng, D., Liu, T., Sun, Z., Bugge, A., Mullican, S. E., Alenghat, T., Liu, X. S., & Lazar, M. A. (2011) · Science · doi:10.1126/science.1198125 · Cited by 701 · see citing works
Intercellular Coupling Confers Robustness against Mutations in the SCN Circadian Clock Network
Liu, A. C., Welsh, D. K., Ko, C. H., Tran, H. G., Zhang, E. E., Priest, A. A., Buhr, E. D., Singer, O., Meeker, K., Verma, I. M., et al. (2007) · Cell · doi:10.1016/j.cell.2007.02.047 · Cited by 694 · see citing works
Self-citationRhythmic histone acetylation underlies transcription in the mammalian circadian clock
Etchegaray, J.-P., Lee, C., Wade, P. A., & Reppert, S. M. (2003) · Nature · doi:10.1038/nature01314 · Cited by 679 · see citing works
Harmonics of Circadian Gene Transcription in Mammals
Hughes, M. E., DiTacchio, L., Hayes, K. R., Vollmers, C., Pulivarthy, S. R., Baggs, J. E., Panda, S., & Hogenesch, J. B. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000442 · Cited by 674 · see citing works
Kornmann, B., Schaad, O., Bujard, H., Takahashi, J. S., & Schibler, U. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050034 · Cited by 658 · see citing works
Self-citationCryptochromes mediate rhythmic repression of the glucocorticoid receptor
Lamia, K. A., Papp, S. J., Yu, R. T., Barish, G. D., Uhlenhaut, N. H., Jonker, J. W., Downes, M., & Evans, R. M. (2011) · Nature · doi:10.1038/nature10700 · Cited by 590 · see citing works
Rhythms of Mammalian Body Temperature Can Sustain Peripheral Circadian Clocks
Brown, S. A., Zumbrunn, G., Fleury-Olela, F., Preitner, N., & Schibler, U. (2002) · Current Biology · doi:10.1016/s0960-9822(02)01145-4 · Cited by 589 · see citing works
Defining mechanisms that regulate RNA polymerase II transcription in vivo
Fuda, N. J., Ardehali, M. B., & Lis, J. T. (2009) · Nature · doi:10.1038/nature08449 · Cited by 576 · see citing works
Circadian orchestration of the hepatic proteome
Reddy, A. B., Karp, N. A., Maywood, E. S., Sage, E. A., Deery, M., O'Neill, J. S., Wong, G. K. Y., Chesham, J., Odell, M., Lilley, K. S., et al. (2006) · Current Biology · doi:10.1016/j.cub.2006.04.026 · Cited by 548 · see citing works
Siepka, S. M., Yoo, S. H., Park, J., Song, W., Kumar, V., Hu, Y., Lee, C., & Takahashi, J. S. (2007) · Cell · doi:10.1016/j.cell.2007.04.030 · Cited by 536 · see citing works
Self-citationGachon, F., Fleury-Olela, F., Schaad, O., Descombes, P., & Schibler, U. (2006) · Cell Metabolism · doi:10.1016/j.cmet.2006.04.015 · Cited by 511 · see citing works
Busino, L., Bassermann, F. C., Maiolica, A., Lee, C., Nolan, P. M., Godinho, S. I. H., Draetta, G. F., & Pagano, M. (2007) · Science · doi:10.1126/science.1141194 · Cited by 509 · see citing works
Circadian and CLOCK-controlled regulation of the mouse transcriptome and cell proliferation
Miller, B. H., McDearmon, E. L., Panda, S., Hayes, K. R., Zhang, J., Andrews, J. L., Antoch, M. P., Walker, J. R., Esser, K. A., Hogenesch, J. B., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0611724104 · Cited by 509 · see citing works
Self-citationCLOCK and NPAS2 have overlapping roles in the suprachiasmatic circadian clock
DeBruyne, J. P., Weaver, D. R., & Reppert, S. M. (2007) · Nature Neuroscience · doi:10.1038/nn1884 · Cited by 484 · see citing works
Rey, G., Cesbron, F., Rougemont, J., Reinke, H., Brunner, M., & Naef, F. (2011) · PLoS Biology · doi:10.1371/journal.pbio.1000595 · Cited by 473 · see citing works
The After-Hours Mutant Reveals a Role for Fbxl3 in Determining Mammalian Circadian Period
Godinho, S. I. H., Maywood, E. S., Shaw, L. E., Tucci, V., Barnard, A. R., Busino, L., Pagano, M., Kendall, R., Quwailid, M. M., Romero, M. R., et al. (2007) · Science · doi:10.1126/science.1141138 · Cited by 468 · see citing works
Storch, K.-F., Paz, C., Signorovitch, J., Raviola, E., Pawlyk, B., Li, T., & Weitz, C. J. (2007) · Cell · doi:10.1016/j.cell.2007.06.045 · Cited by 460 · see citing works
Liu, A. C., Tran, H. G., Zhang, E. E., Priest, A. A., Welsh, D. K., & Kay, S. A. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000023 · Cited by 396 · see citing works
A Molecular Mechanism for Circadian Clock Negative Feedback
Duong, H. A., Robles, M. S., Knutti, D., & Weitz, C. J. (2011) · Science · doi:10.1126/science.1196766 · Cited by 362 · see citing works
Schmutz, I., Ripperger, J. A., Baeriswyl-Aebischer, S., & Albrecht, U. (2010) · Genes & Development · doi:10.1101/gad.564110 · Cited by 361 · see citing works
Mammalian Per-Arnt-Sim Proteins in Environmental Adaptation
McIntosh, B. E., Hogenesch, J. B., & Bradfield, C. A. (2010) · Annual Review of Physiology · doi:10.1146/annurev-physiol-021909-135922 · Cited by 352 · see citing works
Crystal Structure of the Heterodimeric CLOCK:BMAL1 Transcriptional Activator Complex
Huang, N. N., Chelliah, Y., Shan, Y., Taylor, C. A., Yoo, S. H., Partch, C. L., Green, C. B., Zhang, H., & Takahashi, J. S. (2012) · Science · doi:10.1126/science.1222804 · Cited by 349 · see citing works
Self-citationPoly(ADP-ribose) polymerase 1 participates in the phase entrainment of circadian clocks to feeding
Asher, G., Reinke, H., Altmeyer, M., Gutierrez-Arcelus, M., Hottiger, M. O., & Schibler, U. (2010) · Cell · doi:10.1016/j.cell.2010.08.016 · Cited by 340 · see citing works
Dissecting the Functions of the Mammalian Clock Protein BMAL1 by Tissue-Specific Rescue in Mice
McDearmon, E. L., Patel, K., Ko, C. H., Walisser, J. A., Schook, A. C., Chong, J. L., Wilsbacher, L. D., Song, E. J., Hong, H., Bradfield, C. A., et al. (2006) · Science · doi:10.1126/science.1132430 · Cited by 321 · see citing works
Self-citationNascent-Seq reveals novel features of mouse circadian transcriptional regulation
Menet, J. S., Rodriguez, J., Abruzzi, K. C., & Rosbash, M. (2012) · eLife · doi:10.7554/elife.00011 · Cited by 321 · see citing works
Shirogane, T., Jin, J., Cambronne, X. A., & Harper, J. W. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m502862200 · Cited by 293 · see citing works
The histone methyltransferase MLL1 permits the oscillation of circadian gene expression
Katada, S., & Sassone‐Corsi, P. (2010) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1961 · Cited by 291 · see citing works
PERIOD1-Associated Proteins Modulate the Negative Limb of the Mammalian Circadian Oscillator
Brown, S. A., Ripperger, J. A., Kadener, S., Fleury-Olela, F., Vilbois, F., Rosbash, M., & Schibler, U. (2005) · Science · doi:10.1126/science.1107373 · Cited by 285 · see citing works
Properties, Entrainment, and Physiological Functions of Mammalian Peripheral Oscillators
Stratmann, M., & Schibler, U. (2006) · Journal of Biological Rhythms · doi:10.1177/0748730406293889 · Cited by 268 · see citing works
Delay in Feedback Repression by Cryptochrome 1 Is Required for Circadian Clock Function
Ukai‐Tadenuma, M., Yamada, R. G., Xu, H., Ripperger, J. A., Liu, A. C., & Ueda, H. R. (2011) · Cell · doi:10.1016/j.cell.2010.12.019 · Cited by 264 · see citing works
Cold-Inducible RNA-Binding Protein Modulates Circadian Gene Expression Posttranscriptionally
Morf, J., Rey, G., Schneider, K., Stratmann, M., Fujita, J., Naef, F., & Schibler, U. (2012) · Science · doi:10.1126/science.1217726 · Cited by 263 · see citing works
Vollmers, C., Schmitz, R. J., Nathanson, J. L., Yeo, G. W.-M., Ecker, J. R., & Panda, S. (2012) · Cell Metabolism · doi:10.1016/j.cmet.2012.11.004 · Cited by 253 · see citing works
Kang, T.-H., Lindsey-Boltz, L. A., Reardon, J. T., & Sancar, A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0915085107 · Cited by 250 · see citing works
Hirota, T., Lee, J. W., Lewis, W. G., Zhang, E. E., Breton, G., Liu, X., Garcia, M. E., Peters, E. C., Etchegaray, J., Traver, D. J., et al. (2010) · PLoS Biology · doi:10.1371/journal.pbio.1000559 · Cited by 248 · see citing works
Saini, C., Morf, J., Stratmann, M., Gos, P., & Schibler, U. (2012) · Genes & Development · doi:10.1101/gad.183251.111 · Cited by 248 · see citing works
Cell autonomy and synchrony of suprachiasmatic nucleus circadian oscillators
Mohawk, J. A., & Takahashi, J. S. (2011) · Trends in Neurosciences · doi:10.1016/j.tins.2011.05.003 · Cited by 247 · see citing works
Self-citationIsojima, Y., Nakajima, M., Ukai, H., Fujishima, H., Yamada, R. G., Masumoto, K., Kiuchi, R., Ishida, M., Ukai‐Tadenuma, M., Minami, Y., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0908733106 · Cited by 246 · see citing works
Self-citationHistone Lysine Demethylase JARID1a Activates CLOCK-BMAL1 and Influences the Circadian Clock
DiTacchio, L., Le, H. D., Vollmers, C., Hatori, M., Witcher, M., Secombe, J., & Panda, S. (2011) · Science · doi:10.1126/science.1206022 · Cited by 244 · see citing works
SCFFBXL3 ubiquitin ligase targets cryptochromes at their cofactor pocket
Xing, W., Busino, L., Hinds, T. R., Marionni, S. T., Saifee, N. H., Bush, M. F., Pagano, M., & Zheng, N. (2013) · Nature · doi:10.1038/nature11964 · Cited by 234 · see citing works
Chen, R., Schirmer, A. E., Lee, Y., Lee, H.-M., Kumar, V., Yoo, S. H., Takahashi, J. S., & Lee, C. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.10.012 · Cited by 225 · see citing works
Self-citationGreen, C. B., Douris, N., Kojima, S., Strayer, C. A., Fogerty, J., Lourim, D., Keller, S. R., & Besharse, J. C. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0702448104 · Cited by 215 · see citing works
Self-citationCircadian oscillation of nucleotide excision repair in mammalian brain
Kang, T., Reardon, J. T., Kemp, M. G., & Sancar, A. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0812638106 · Cited by 205 · see citing works
Martelot, G. L., Canella, D., Symul, L., Migliavacca, E., Gilardi, F., Liechti, R., Martin, O., Harshman, K., Delorenzi, M., Desvergne, B., et al. (2012) · PLoS Biology · doi:10.1371/journal.pbio.1001442 · Cited by 203 · see citing works
Czarna, A., Berndt, A., Singh, H. R., Grudziecki, A., Ladurner, A. G., Timinszky, G., Kramer, A., & Wolf, E. (2013) · Cell · doi:10.1016/j.cell.2013.05.011 · Cited by 196 · see citing works
Chen, Z., Yoo, S. H., Park, Y. S., Kim, K.-H., Wei, S., Buhr, E. D., Ye, Z., Pan, H., & Takahashi, J. S. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1118034108 · Cited by 189 · see citing works
Self-citation(Re)inventing the Circadian Feedback Loop
Brown, S. A., Kowalska, E., & Dallmann, R. (2012) · Developmental Cell · doi:10.1016/j.devcel.2012.02.007 · Cited by 188 · see citing works
Lee, H.-M., Chen, R., Kim, H., Etchegaray, J., Weaver, D. R., & Lee, C. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1107178108 · Cited by 185 · see citing works
β-TrCP1-Mediated Degradation of PERIOD2 Is Essential for Circadian Dynamics
Reischl, S., Vanselow, K., Westermark, P. O., Thierfelder, N., Maier, B., Herzel, H., & Kramer, A. (2007) · Journal of Biological Rhythms · doi:10.1177/0748730407303926 · Cited by 176 · see citing works
Nocturnin, a Deadenylase in Xenopus laevis Retina
Baggs, J. E., & Green, C. B. (2003) · Current Biology · doi:10.1016/s0960-9822(03)00014-9 · Cited by 175 · see citing works
Self-citationThe Polycomb Group Protein EZH2 Is Required for Mammalian Circadian Clock Function
Etchegaray, J., Yang, X., DeBruyne, J. P., Peters, A. H. F. M., Weaver, D. R., Jenuwein, T., & Reppert, S. M. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m603722200 · Cited by 174 · see citing works
Feedback Regulation of Transcriptional Termination by the Mammalian Circadian Clock PERIOD Complex
Padmanabhan, K., Robles, M. S., Westerling, T., & Weitz, C. J. (2012) · Science · doi:10.1126/science.1221592 · Cited by 173 · see citing works
Circadian control of mRNA polyadenylation dynamics regulates rhythmic protein expressionPreprint
Kojima, S., Sher-Chen, E. L., & Green, C. B. (2012) · Genes & Development · doi:10.1101/gad.208306.112 · Cited by 169 · see citing works
Self-citationJumonji domain protein JMJD5 functions in both the plant and human circadian systems
Jones, M. A., Covington, M. F., DiTacchio, L., Vollmers, C., Panda, S., & Harmer, S. L. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1014204108 · Cited by 168 · see citing works
Hatanaka, F., Matsubara, C., Myung, J., Yoritaka, T., Kamimura, N., Tsutsumi, S., Kanai, A., Suzuki, Y., Sassone‐Corsi, P., Aburatani, H., et al. (2010) · Molecular and Cellular Biology · doi:10.1128/mcb.00781-10 · Cited by 142 · see citing works
Circadian gene expression is resilient to large fluctuations in overall transcription rates
Dibner, C., Sage, D., Unser, M. A., Bauer, C. R., d’Eysmond, T., Naef, F., & Schibler, U. (2008) · The EMBO Journal · doi:10.1038/emboj.2008.262 · Cited by 137 · see citing works
The Structural Basis of Gas-Responsive Transcription by the Human Nuclear Hormone Receptor REV-ERBβ
Pardee, K., Xu, X., Reinking, J., Schuetz, A., Dong, A., Liu, S., Zhang, R., Tiefenbach, J., Lajoie, G., Plotnikov, A. N., et al. (2009) · PLoS Biology · doi:10.1371/journal.pbio.1000043 · Cited by 133 · see citing works
Biochemical Analysis of the Canonical Model for the Mammalian Circadian Clock
Ye, R., Selby, C. P., Öztürk, N., Annayev, Y., & Sancar, A. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.254680 · Cited by 129 · see citing works
Brain-Specific Rescue of Clock Reveals System-Driven Transcriptional Rhythms in Peripheral Tissue
Hughes, M. E., Hong, H., Chong, J. L., Indacochea, A. A., Lee, S. S., Han, M., Takahashi, J., & Hogenesch, J. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002835 · Cited by 116 · see citing works
Self-citationRegulation of alternative splicing by the circadian clock and food related cues
McGlincy, N. J., Valomon, A., Chesham, J. E., Maywood, E. S., Hastings, M. H., & Ule, J. (2012) · Genome biology · doi:10.1186/gb-2012-13-6-r54 · Cited by 114 · see citing works
The BMAL1 C terminus regulates the circadian transcription feedback loop
Kiyohara, Y. B., Tagao, S., Tamanini, F., Morita, A., Sugisawa, Y., Yasuda, M., Yamanaka, I., Ueda, H. R., van der Horst, G. T. J., Kondo, T., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0601416103 · Cited by 114 · see citing works
Wang, Z., Wu, Y., Li, L., & Su, X. (2012) · Cell Research · doi:10.1038/cr.2012.170 · Cited by 106 · see citing works
Chaves, I., Yagita, K., Barnhoorn, S., et al. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.26.5.1743-1753.2006 · Cited by 104 · see citing works
Nutrient sensing and the circadian clock
Peek, C. B., Ramsey, K. M., Marcheva, B., & Bass, J. T. (2012) · Trends in Endocrinology and Metabolism · doi:10.1016/j.tem.2012.02.003 · Cited by 103 · see citing works
Partch, C. L., Shields, K. F., Thompson, C. L., Selby, C. P., & Sancar, A. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0604138103 · Cited by 100 · see citing works
Self-citationSerum factors in older individuals change cellular clock properties
Pagani, L., Schmitt, K., Meier, F., Izakovic, J., Roemer, K., Viola, A., Cajochen, C., Wirz‐Justice, A., Brown, S. A., & Eckert, A. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1008882108 · Cited by 98 · see citing works
Transactivation mechanisms of mouse clock transcription factors, mClock and mArnt3
Takahata, S., Ozaki, T., Mimura, J., Kikuchi, Y., Sogawa, K., & Fujii‐Kuriyama, Y. (2000) · Genes to Cells · doi:10.1046/j.1365-2443.2000.00363.x · Cited by 97 · see citing works
Hennig, S., Strauss, H. M., Vanselow, K., Yıldız, Ö., Schulze, S., Arens, J., Kramer, A., & Wolf, E. (2009) · PLoS Biology · doi:10.1371/journal.pbio.1000094 · Cited by 97 · see citing works
Nocturnin Regulates Circadian Trafficking of Dietary Lipid in Intestinal Enterocytes
Douris, N., Kojima, S., Pan, X., Lerch-Gaggl, A. F., Duong, S. Q., Hussain, M. M., & Green, C. B. (2011) · Current Biology · doi:10.1016/j.cub.2011.07.018 · Cited by 93 · see citing works
Self-citationHamaguchi, H., Fujimoto, K., Kawamoto, T., Noshiro, M., Maemura, K., Takeda, N., Nagai, R., Furukawa, M., Honma, S., Honma, K., et al. (2004) · Biochemical Journal · doi:10.1042/bj20031760 · Cited by 92 · see citing works
Nuclear Receptors, Metabolism, and the Circadian ClockPreprint
Yang, X., Lamia, K. A., & Evans, R. M. (2007) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2007.72.058 · Cited by 87 · see citing works
CIPC is a mammalian circadian clock protein without invertebrate homologues
Zhao, W., Malinin, N. L., Yang, F., et al. (2007) · Nature Cell Biology · doi:10.1038/ncb1539 · Cited by 85 · see citing works
Stoichiometric Relationship among Clock Proteins Determines Robustness of Circadian Rhythms
Lee, Y., Chen, R., Lee, C., & Lee, C. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.207217 · Cited by 82 · see citing works
Immediate early response of the circadian polyA ribonuclease nocturnin to two extracellular stimuli
Garbarino‐Pico, E., Niu, S., Rollag, M. D., Strayer, C. A., Besharse, J. C., & Green, C. B. (2007) · RNA · doi:10.1261/rna.286507 · Cited by 82 · see citing works
Self-citationPhelan, C. A., Gampe, R. T., Lambert, M. H., Parks, D. J., Montana, V. G., Bynum, J. M., Timothy, B., Hu, X., Williams, S. P., Nolte, R. T., et al. (2010) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1860 · Cited by 78 · see citing works
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Kucera, N., Schmalen, I., Hennig, S., Öllinger, R., Strauss, H. M., Grudziecki, A., Wieczorek, C. M., Kramer, A., & Wolf, E. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1113280109 · Cited by 74 · see citing works
Khan, S. K., Xu, H., Ukai‐Tadenuma, M., et al. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.368001 · Cited by 71 · see citing works
Stratmann, M., Stadler, F., Tamanini, F., van der Horst, G. T. J., & Ripperger, J. A. (2010) · Genes & Development · doi:10.1101/gad.578810 · Cited by 70 · see citing works
Partch, C. L., & Gardner, K. H. (2010) · Journal of Cellular Physiology · doi:10.1002/jcp.22067 · Cited by 62 · see citing works
Self-citationThe circadian clock transcriptional complex: metabolic feedback intersects with epigenetic control
Masri, S., Zocchi, L., Katada, S., Mora, E. M., & Sassone‐Corsi, P. (2012) · Annals of the New York Academy of Sciences · doi:10.1111/j.1749-6632.2012.06649.x · Cited by 53 · see citing works
Distinct Roles of DBHS Family Members in the Circadian Transcriptional Feedback Loop
Kowalska, E., Ripperger, J. A., Muheim, C., Maier, B., Kurihara, Y., Fox, A. H., Kramer, A., & Brown, S. A. (2012) · Molecular and Cellular Biology · doi:10.1128/mcb.00334-12 · Cited by 51 · see citing works
The mortality of MOP3 deficient mice with a systemic functional failure
Sun, Y., Yang, Z., Niu, Z., Wang, W., Peng, J., Li, Q., Ma, M. Y. J., & Zhao, Y. X. (2006) · Journal of Biomedical Science · doi:10.1007/s11373-006-9108-4 · Cited by 46 · see citing works
Quantitative Analyses of Cryptochrome-mBMAL1 Interactions
Czarna, A., Breitkreuz, H., Mahrenholz, C. C., Arens, J., Strauss, H. M., & Wolf, E. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.244749 · Cited by 46 · see citing works
Origins and consequences of transcriptional discontinuity
Suter, D. M., Molina, N., Naef, F., & Schibler, U. (2011) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2011.09.004 · Cited by 43 · see citing works
Özber, N., Barış, İ., Tatlici, G., et al. (2010) · BMC Molecular Biology · doi:10.1186/1471-2199-11-69 · Cited by 35 · see citing works
Novel Insights from Genetic and Molecular Characterization of the Human ClockPreprint
Ptáček, L. J., Jones, C. R., & Fu, Y. (2007) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2007.72.017 · Cited by 31 · see citing works
McCarthy, E. V., Baggs, J. E., Geskes, J. M., et al. (2009) · Molecular and Cellular Biology · doi:10.1128/mcb.00641-09 · Cited by 26 · see citing works
Structure Function Analysis of Mammalian CryptochromesPreprint
Tamanini, F., Chaves, I., Bajek, M. I., & van der Horst, G. T. J. (2007) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2007.72.066 · Cited by 22 · see citing works
The Three Rs of Transcription: Recruit, Retain, and Recycle
Motta-Mena, L. B., Partch, C. L., & Gardner, K. H. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.12.010 · Cited by 4 · see citing works
Self-citation
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- [102]Wang Z 2012 Intermolecular recognition revealed by the complex structure of human CLOCK-BMAL1 basic helix-loop-helix domains with E-box DNA Cell research PMC3567813 23229515
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Sorted by citations
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Zheng, N., & Shabek, N. (2017) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060815-014922 · Cited by 1,499 · see citing works
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Walker, W. H., Walton, J. C., DeVries, A. C., & Nelson, R. J. (2020) · Translational Psychiatry · doi:10.1038/s41398-020-0694-0 · Cited by 1,030 · see citing works
Brain disorders? Not really: Why network structures block reductionism in psychopathology research
Borsboom, D., Cramer, A. O. J., & Kalis, A. (2019) · Behavioral and Brain Sciences · doi:10.1017/s0140525x17002266 · Cited by 468 · see citing works
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Bedrosian, T. A., & Nelson, R. J. (2017) · Translational Psychiatry · doi:10.1038/tp.2016.262 · Cited by 356 · see citing works
Core circadian clock genes regulate leukemia stem cells in AML
Puram, R. V., Kowalczyk, M. S., de Boer, C. G., Schneider, R. K., Miller, P. G., McConkey, M., Tothova, Z., Tejero, H., Heckl, D., Järås, M., et al. (2016) · Cell · doi:10.1016/j.cell.2016.03.015 · Cited by 274 · see citing works
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Gururajan, A., Reif, A., Cryan, J. F., & Slattery, D. A. (2019) · Nature Reviews Neuroscience · doi:10.1038/s41583-019-0221-6 · Cited by 269 · see citing works
Circadian rhythms, metabolism, and chrononutrition in rodents and humans
Johnston, J. D., Ordovás, J. M., Scheer, F. A., & Turek, F. W. (2016) · Advances in Nutrition · doi:10.3945/an.115.010777 · Cited by 258 · see citing works
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Masri, S., Papagiannakopoulos, T., Kinouchi, K., Liu, Y., Cervantes, M., Baldi, P., Jacks, T., & Sassone-Corsi, P. (2016) · Cell · doi:10.1016/j.cell.2016.04.039 · Cited by 234 · see citing works
Gottlieb, J. F., Benedetti, F., Geoffroy, P. A., Henriksen, T. E. G., Lam, R. W., Murray, G., Phelps, J., Sit, D., Swartz, H. A., Crowe, M., et al. (2019) · Bipolar Disorders · doi:10.1111/bdi.12847 · Cited by 196 · see citing works
Vadnie, C. A., & McClung, C. A. (2017) · Neural Plasticity · doi:10.1155/2017/1504507 · Cited by 199 · see citing works
Skeldon, A. C., Derks, G., & Dijk, D.-J. (2016) · Sleep Medicine Reviews · doi:10.1016/j.smrv.2015.05.011 · Cited by 165 · see citing works
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Bedrosian, T. A., Fonken, L. K., & Nelson, R. J. (2016) · Annual Review of Physiology · doi:10.1146/annurev-physiol-021115-105102 · Cited by 170 · see citing works
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Sancar, A., Lindsey-Boltz, L. A., Gaddameedhi, S., Selby, C. P., Ye, R., Chiou, Y.-Y., Kemp, M. G., Hu, J., Lee, J. H., & Ozturk, N. (2015) · Biochemistry · doi:10.1021/bi5007354 · Cited by 170 · see citing works
Circadian rhythms – from genes to physiology and disease
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Skeldon, A. C., Phillips, A. J. K., & Dijk, D.-J. (2017) · Scientific Reports · doi:10.1038/srep45158 · Cited by 155 · see citing works
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Kemler, D., Wolff, C. A., & Esser, K. A. (2020) · The Journal of Physiology · doi:10.1113/jp279779 · Cited by 87 · see citing works
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Jones, S. G., & Benca, R. M. (2015) · Sleep Medicine Clinics · doi:10.1016/j.jsmc.2015.07.004 · Cited by 86 · see citing works
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Carter, B., Justin, H. S., Gulick, D., & Gamsby, J. J. (2021) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2021.644747 · Cited by 42 · see citing works
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Adler, M., Chavan, A. R., & Medzhitov, R. (2023) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-120420-113830 · Cited by 40 · see citing works
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Ikeno, T., & Yan, L. (2016) · Journal of Biological Rhythms · doi:10.1177/0748730416642065 · Cited by 37 · see citing works
Douma, L. G., Costello, H. M., Crislip, G. R., Cheng, K.-Y., Lynch, I. J., Juffre, A., Barral, D., Masten, S., Roig, E., Beguiristain, K., et al. (2022) · American Journal of Physiology-Renal Physiology · doi:10.1152/ajprenal.00385.2021 · Cited by 36 · see citing works
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Rohr, K. E., Telega, A., Savaglio, A., & Evans, J. A. (2021) · Hormones and Behavior · doi:10.1016/j.yhbeh.2020.104888 · Cited by 35 · see citing works
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Parsons, K., Nakatani, Y., & Nguyen, M. D. (2015) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-014-1788-8 · Cited by 35 · see citing works
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Cissé, Y. M., Russart, K. L. G., & Nelson, R. J. (2017) · Scientific Reports · doi:10.1038/srep45497 · Cited by 32 · see citing works
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Zwighaft, Z., Reinke, H., & Asher, G. (2016) · Journal of Biological Rhythms · doi:10.1177/0748730416633552 · Cited by 29 · see citing works
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Ki, Y., Ri, H., Lee, H., Yoo, E., Choe, J., & Lim, C. (2015) · The Neuroscientist · doi:10.1177/1073858415577083 · Cited by 24 · see citing works
Palm, D., Uzoni, A., Simon, F., Fischer, M., Coogan, A., Tucha, O., Thome, J., & Faltraco, F. (2021) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2021.06.007 · Cited by 20 · see citing works
Putilov, A. A., Dorokhov, V. B., & Poluektov, M. G. (2018) · Chronobiology International · doi:10.1080/07420528.2017.1417314 · Cited by 8 · see citing works
- Authors
- Partch, C. L., Green, C. B., & Takahashi, J. S.
- Affiliations
- University of California, Santa Cruz (US)
- The University of Texas Southwestern Medical Center (US)
- Corresponding author
- Partch, Carrie L.
- Takahashi, Joseph S.
- Venue
- Trends in Cell Biology
- Publisher
- Elsevier BV
- Published
- 2014-02
- Volume
- 24
- Issue
- 2
- Pages
- 90-99
- ISSN
- 0962-8924 (ISSN-L)
- PMC
- PMC3946763
- OpenAlex
- W1992726958
- Cited by
- 1,449
- References
- 114
- Citations by year
- 2026: 123 · 2025: 139 · 2024: 117 · 2023: 118 · 2022: 128 · 2021: 135 · 2020: 135 · 2019: 121 · 2018: 118 · 2017: 100 · 2016: 88 · 2015: 79 · 2014: 40 · 2013: 2 · 2012: 1
- FWCI
- 8.30
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Trends in Cell Biology (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Funders
- Howard Hughes Medical Institute
- National Institutes of Health (5p50mh074924-05)
- National Institute of Mental Health (P50 MH-074924, R01MH078024)
- National Institute of General Medical Sciences (R01GM090247, R01GM111387)
- National Institute of Neurological Disorders and Stroke (R21NS079986)
- Topics
- Life Sciences › Neuroscience › Endocrine and Autonomic Systems › Circadian rhythm and melatonin
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Light effects on plants
- Keywords
- circadian clock, molecular clock, transcription-translation feedback loop, post-transcriptional regulation, biological rhythms
- MeSH terms
- Animals, Circadian Rhythm, Humans, Circadian Clocks
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