Integrative genomics viewer

Cited by (286)

Items 101–200 of 286

1. Characterizing the molecular regulation of inhibitory immune checkpoints with multimodal single-cell screens
   Papalexi, Efthymia, Mimitou, Eleni P., Butler, Andrew W., Foster, Samantha, Bracken, Bernadette, Mauck, William M., Wessels, Hans-Hermann, Hao, Yuhan, Yeung, Bertrand Z., Smibert, Peter et al. · 2021 · Nature Genetics
2. A key role for EZH2 and associated genes in mouse and human adult T-cell acute leukemia
   Simon, Camille, Chagraoui, Jalila, Krosl, Jana, Gendron, Patrick, Wilhelm, Brian, Lemieux, Sébastien, Boucher, Geneviève, Chagnon, Pierre, Drouin, Simon, Lambert, Raphaëlle et al. · 2012 · Genes & Development
3. PTBP1-Mediated Alternative Splicing Regulates the Inflammatory Secretome and the Pro-tumorigenic Effects of Senescent Cells
   Georgilis, Athena, Klotz, Sabrina, Hanley, Christopher J., Herranz, Nicolas, Weirich, Benedikt, Morancho, Beatriz, Leote, Ana Carolina, D'Artista, Luana, Gallage, Suchira, Seehawer, Marco et al. · 2018 · Cancer Cell
4. Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast
   McManus, C. Joel, May, Gemma E., Spealman, Pieter, Shteyman, Alan · 2014 · Genome Research
5. Injured adult neurons regress to an embryonic transcriptional growth state
   Poplawski, Gunnar H. D., Kawaguchi, Riki, Van Niekerk, Erna, Lu, Paul, Mehta, Neil, Canete, Philip, Lie, Richard, Dragatsis, Ioannis, Meves, Jessica M., Zheng, Binhai et al. · 2020 · Nature
6. KMT2D Deficiency Impairs Super-Enhancers to Confer a Glycolytic Vulnerability in Lung Cancer
   Alam, Hunain, Tang, Ming, Maitituoheti, Mayinuer, Dhar, Shilpa S., Kumar, Manish, Han, Chae Young, Ambati, Chandrashekar R., Amin, Samir B., Gu, Bingnan, Chen, Tsai-Yu et al. · 2020 · Cancer Cell
7. Dissecting super-enhancer hierarchy based on chromatin interactions
   Huang, Jialiang, Li, Kailong, Cai, Wenqing, Liu, Xin, Zhang, Yuannyu, Orkin, Stuart H., Xu, Jian, Yuan, Guo-Cheng · 2018 · Nature Communications
8. Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing
   Helman, Elena, Lawrence, Michael S., Stewart, Chip, Sougnez, Carrie, Getz, Gad, Meyerson, Matthew · 2014 · Genome Research
9. NFIA is a gliogenic switch enabling rapid derivation of functional human astrocytes from pluripotent stem cells
   Tchieu, Jason, Calder, Elizabeth L., Guttikonda, Sudha R., Gutzwiller, Eveline M., Aromolaran, Kelly A., Steinbeck, Julius A., Goldstein, Peter A., Studer, Lorenz · 2019 · Nature Biotechnology
10. Frequent loss of heterozygosity in CRISPR-Cas9–edited early human embryos
    Alanis-Lobato, Gregorio, Zohren, Jasmin, McCarthy, Afshan, Fogarty, Norah M. E., Kubikova, Nada, Hardman, Emily, Greco, Maria, Wells, Dagan, Turner, James M. A., Niakan, Kathy K. · 2021 · Proceedings of the National Academy of Sciences
11. Deeply conserved synteny and the evolution of metazoan chromosomes
    Simakov, Oleg, Bredeson, Jessen, Berkoff, Kodiak, Marletaz, Ferdinand, Mitros, Therese, Schultz, Darrin T., O’Connell, Brendan L., Dear, Paul, Martinez, Daniel E., Steele, Robert E. et al. · 2022 · Science Advances
12. Intrinsic Immunogenicity of Small Cell Lung Carcinoma Revealed by Its Cellular Plasticity
    Mahadevan, Navin R., Knelson, Erik H., Wolff, Jacquelyn O., Vajdi, Amir, Saigí, Maria, Campisi, Marco, Hong, Deli, Thai, Tran C., Piel, Brandon, Han, Saemi et al. · 2021 · Cancer Discovery
13. Dynamics and genomic landscape of CD8+ T cells undergoing hepatic priming
    Bénéchet, Alexandre P., De Simone, Giorgia, Di Lucia, Pietro, Cilenti, Francesco, Barbiera, Giulia, Le Bert, Nina, Fumagalli, Valeria, Lusito, Eleonora, Moalli, Federica, Bianchessi, Valentina et al. · 2019 · Nature
14. Biological plasticity rescues target activity in CRISPR knock outs
    Smits, Arne H., Ziebell, Frederik, Joberty, Gerard, Zinn, Nico, Mueller, William F., Clauder-Münster, Sandra, Eberhard, Dirk, Fälth Savitski, Maria, Grandi, Paola, Jakob, Petra et al. · 2019 · Nature Methods
15. Germline cancer susceptibility gene variants, somatic second hits, and survival outcomes in patients with resected pancreatic cancer
    Yurgelun, Matthew B., Chittenden, Anu B., Morales-Oyarvide, Vicente, Rubinson, Douglas A., Dunne, Richard F., Kozak, Margaret M., Qian, Zhi Rong, Welch, Marisa W., Brais, Lauren K., Da Silva, Annacarolina et al. · 2019 · Genetics in Medicine
16. Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes
    Grarup, Niels, Moltke, Ida, Andersen, Mette K., Dalby, Maria, Vitting-Seerup, Kristoffer, Kern, Timo, Mahendran, Yuvaraj, Jørsboe, Emil, Larsen, Christina V. L., Dahl-Petersen, Inger K. et al. · 2018 · Nature Genetics
17. Loss-of-Function Variants in Schizophrenia Risk and SETD1A as a Candidate Susceptibility Gene
    Takata, Atsushi, Xu, Bin, Ionita-Laza, Iuliana, Roos, J. Louw, Gogos, Joseph A., Karayiorgou, Maria · 2014 · Neuron
18. A Comprehensive Workflow for Read Depth-Based Identification of Copy-Number Variation from Whole-Genome Sequence Data
    Trost, Brett, Walker, Susan, Wang, Zhuozhi, Thiruvahindrapuram, Bhooma, MacDonald, Jeffrey R., Sung, Wilson W.L., Pereira, Sergio L., Whitney, Joe, Chan, Ada J.S., Pellecchia, Giovanna et al. · 2018 · The American Journal of Human Genetics
19. Metabolic heterogeneity underlies reciprocal fates of TH17 cell stemness and plasticity
    Karmaus, Peer W. F., Chen, Xiang, Lim, Seon Ah, Herrada, Andrés A., Nguyen, Thanh-Long M., Xu, Beisi, Dhungana, Yogesh, Rankin, Sherri, Chen, Wenan, Rosencrance, Celeste et al. · 2019 · Nature
20. Widespread Inducible Transcription Downstream of Human Genes
    Vilborg, Anna, Passarelli, Maria C., Yario, Therese A., Tycowski, Kazimierz T., Steitz, Joan A. · 2015 · Molecular Cell
21. The myokine decorin is regulated by contraction and involved in muscle hypertrophy
    Kanzleiter, Timo, Rath, Michaela, Görgens, Sven W., Jensen, Jørgen, Tangen, Daniel S., Kolnes, Anders J., Kolnes, Kristoffer J., Lee, Sindre, Eckel, Jürgen, Schürmann, Annette et al. · 2014 · Biochemical and Biophysical Research Communications
22. Histone Deacetylases 1 and 2 Regulate Microglia Function during Development, Homeostasis, and Neurodegeneration in a Context-Dependent Manner
    Datta, Moumita, Staszewski, Ori, Raschi, Elena, Frosch, Maximilian, Hagemeyer, Nora, Tay, Tuan Leng, Blank, Thomas, Kreutzfeldt, Mario, Merkler, Doron, Ziegler-Waldkirch, Stephanie et al. · 2018 · Immunity
23. TGF-β uses a novel mode of receptor activation to phosphorylate SMAD1/5 and induce epithelial-to-mesenchymal transition
    Ramachandran, Anassuya, Vizán, Pedro, Das, Debipriya, Chakravarty, Probir, Vogt, Janis, Rogers, Katherine W, Müller, Patrick, Hinck, Andrew P, Sapkota, Gopal P, Hill, Caroline S · 2018 · eLife
24. Multimodal analysis of cell-free DNA whole-genome sequencing for pediatric cancers with low mutational burden
    Peneder, Peter, Stütz, Adrian M., Surdez, Didier, Krumbholz, Manuela, Semper, Sabine, Chicard, Mathieu, Sheffield, Nathan C., Pierron, Gaelle, Lapouble, Eve, Tötzl, Marcus et al. · 2021 · Nature Communications
25. Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma
    Kim, Kyu-Tae, Lee, Hye Won, Lee, Hae-Ock, Song, Hye Jin, Jeong, Da Eun, Shin, Sang, Kim, Hyunho, Shin, Yoojin, Nam, Do-Hyun, Jeong, Byong Chang et al. · 2016 · Genome Biology
26. Hematopoietic lineage distribution and evolutionary dynamics of clonal hematopoiesis
    Arends, Christopher Maximilian, Galan-Sousa, Joel, Hoyer, Kaja, Chan, Willy, Jäger, Marten, Yoshida, Kenichi, Seemann, Ricarda, Noerenberg, Daniel, Waldhueter, Nils, Fleischer-Notter, Helga et al. · 2018 · Leukemia
27. Exome sequencing in schizophrenia-affected parent–offspring trios reveals risk conferred by protein-coding de novo mutations
    Howrigan, Daniel P., Rose, Samuel A., Samocha, Kaitlin E., Fromer, Menachem, Cerrato, Felecia, Chen, Wei J., Churchhouse, Claire, Chambert, Kimberly, Chandler, Sharon D., Daly, Mark J. et al. · 2020 · Nature Neuroscience
28. Loss of SATB1 Induces p21-Dependent Cellular Senescence in Post-mitotic Dopaminergic Neurons
    Riessland, Markus, Kolisnyk, Benjamin, Kim, Tae Wan, Cheng, Jia, Ni, Jason, Pearson, Jordan A., Park, Emily J., Dam, Kevin, Acehan, Devrim, Ramos-Espiritu, Lavoisier S. et al. · 2019 · Cell Stem Cell
29. Untitled work
    Xie · 2021 · 10.1111/jipb.13161
30. An atlas of gene regulatory elements in adult mouse cerebrum
    Li, Yang Eric, Preissl, Sebastian, Hou, Xiaomeng, Zhang, Ziyang, Zhang, Kai, Qiu, Yunjiang, Poirion, Olivier B., Li, Bin, Chiou, Joshua, Liu, Hanqing et al. · 2021 · Nature
31. The evolutionary landscape of chronic lymphocytic leukemia treated with ibrutinib targeted therapy
    Landau, Dan A., Sun, Clare, Rosebrock, Daniel, Herman, Sarah E. M., Fein, Joshua, Sivina, Mariela, Underbayev, Chingiz, Liu, Delong, Hoellenriegel, Julia, Ravichandran, Sarangan et al. · 2017 · Nature Communications
32. High-fat diet fuels prostate cancer progression by rewiring the metabolome and amplifying the MYC program
    Labbé, David P., Zadra, Giorgia, Yang, Meng, Reyes, Jaime M., Lin, Charles Y., Cacciatore, Stefano, Ebot, Ericka M., Creech, Amanda L., Giunchi, Francesca, Fiorentino, Michelangelo et al. · 2019 · Nature Communications
33. Truncation and constitutive activation of the androgen receptor by diverse genomic rearrangements in prostate cancer
    Henzler, Christine, Li, Yingming, Yang, Rendong, McBride, Terri, Ho, Yeung, Sprenger, Cynthia, Liu, Gang, Coleman, Ilsa, Lakely, Bryce, Li, Rui et al. · 2016 · Nature Communications
34. A selective HDAC8 inhibitor potentiates antitumor immunity and efficacy of immune checkpoint blockade in hepatocellular carcinoma
    Yang, Weiqin, Feng, Yu, Zhou, Jingying, Cheung, Otto Ka-Wing, Cao, Jianquan, Wang, Jing, Tang, Wenshu, Tu, Yalin, Xu, Liangliang, Wu, Feng et al. · 2021 · Science Translational Medicine
35. Single-cell chromatin accessibility landscape identifies tissue repair program in human regulatory T cells
    Delacher, Michael, Simon, Malte, Sanderink, Lieke, Hotz-Wagenblatt, Agnes, Wuttke, Marina, Schambeck, Kathrin, Schmidleithner, Lisa, Bittner, Sebastian, Pant, Asmita, Ritter, Uwe et al. · 2021 · Immunity
36. KrasG12D and Nkx2-1 haploinsufficiency induce mucinous adenocarcinoma of the lung
    Maeda, Yutaka, Tsuchiya, Tomoshi, Hao, Haiping, Tompkins, David H., Xu, Yan, Mucenski, Michael L., Du, Lingling, Keiser, Angela R., Fukazawa, Takuya, Naomoto, Yoshio et al. · 2012 · Journal of Clinical Investigation
37. The HUSH complex is a gatekeeper of type I interferon through epigenetic regulation of LINE-1s
    Tunbak, Hale, Enriquez-Gasca, Rocio, Tie, Christopher H. C., Gould, Poppy A., Mlcochova, Petra, Gupta, Ravindra K., Fernandes, Liane, Holt, James, van der Veen, Annemarthe G., Giampazolias, Evangelos et al. · 2020 · Nature Communications
38. Continuous and Discrete Neuron Types of the Adult Murine Striatum
    Stanley, Geoffrey, Gokce, Ozgun, Malenka, Robert C., Südhof, Thomas C., Quake, Stephen R. · 2020 · Neuron
39. Dichotomous engagement of HDAC3 activity governs inflammatory responses
    Nguyen, Hoang C. B., Adlanmerini, Marine, Hauck, Amy K., Lazar, Mitchell A. · 2020 · Nature
40. Identification of Therapeutic Targets in Rhabdomyosarcoma through Integrated Genomic, Epigenomic, and Proteomic Analyses
    Stewart, Elizabeth, McEvoy, Justina, Wang, Hong, Chen, Xiang, Honnell, Victoria, Ocarz, Monica, Gordon, Brittney, Dapper, Jason, Blankenship, Kaley, Yang, Yanling et al. · 2018 · Cancer Cell
41. YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens
    Abbey, Darren A, Funt, Jason, Lurie-Weinberger, Mor N, Thompson, Dawn A, Regev, Aviv, Myers, Chad L, Berman, Judith · 2014 · Genome Medicine
42. Single-cell ATAC sequencing analysis: From data preprocessing to hypothesis generation
    Baek, Seungbyn, Lee, Insuk · 2020 · Computational and Structural Biotechnology Journal
43. Click chemistry enables preclinical evaluation of targeted epigenetic therapies
    Tyler, Dean S., Vappiani, Johanna, Cañeque, Tatiana, Lam, Enid Y. N., Ward, Aoife, Gilan, Omer, Chan, Yih-Chih, Hienzsch, Antje, Rutkowska, Anna, Werner, Thilo et al. · 2017 · Science
44. Improved plant cytosine base editors with high editing activity, purity, and specificity
    Ren, Qiurong, Sretenovic, Simon, Liu, Guanqing, Zhong, Zhaohui, Wang, Jiaheng, Huang, Lan, Tang, Xu, Guo, Yachong, Liu, Li, Wu, Yuechao et al. · 2021 · Plant Biotechnology Journal
45. Prevalence of pathogenic mutations in cancer predisposition genes among pancreatic cancer patients
    Hu, Chunling, Hart, Steven N., Bamlet, William R., Moore, Raymond M., Nandakumar, Kannabiran, Eckloff, Bruce W., Lee, Yean K., Petersen, Gloria M., McWilliams, Robert R., Couch, Fergus J. · 2016 · Cancer Epidemiology, Biomarkers & Prevention
46. Ketolysis drives CD8+ T cell effector function through effects on histone acetylation
    Luda, Katarzyna M., Longo, Joseph, Kitchen-Goosen, Susan M., Duimstra, Lauren R., Ma, Eric H., Watson, McLane J., Oswald, Brandon M., Fu, Zhen, Madaj, Zachary, Kupai, Ariana et al. · 2023 · Immunity
47. Ovarian Cancers Harboring Inactivating Mutations in CDK12 Display a Distinct Genomic Instability Pattern Characterized by Large Tandem Duplications
    Popova, Tatiana, Manié, Elodie, Boeva, Valentina, Battistella, Aude, Goundiam, Oumou, Smith, Nicholas K., Mueller, Christopher R., Raynal, Virginie, Mariani, Odette, Sastre-Garau, Xavier et al. · 2016 · Cancer Research
48. Regulation of hepatic drug-metabolizing enzymes in germ-free mice by conventionalization and probiotics
    Selwyn, Felcy Pavithra, Cheng, Sunny Lihua, Klaassen, Curtis D, Cui, Julia Yue · 2016 · Drug Metabolism and Disposition
49. A cell identity switch allows residual BCC to survive Hedgehog pathway inhibition
    Biehs, Brian, Dijkgraaf, Gerrit J. P., Piskol, Robert, Alicke, Bruno, Boumahdi, Soufiane, Peale, Franklin, Gould, Stephen E., de Sauvage, Frederic J. · 2018 · Nature
50. Mechanisms governing the pioneering and redistribution capabilities of the non-classical pioneer PU.1
    Minderjahn, Julia, Schmidt, Andreas, Fuchs, Andreas, Schill, Rudolf, Raithel, Johanna, Babina, Magda, Schmidl, Christian, Gebhard, Claudia, Schmidhofer, Sandra, Mendes, Karina et al. · 2020 · Nature Communications
51. Kupffer-cell-derived IL-6 is repurposed for hepatocyte dedifferentiation via activating progenitor genes from injury-specific enhancers
    Li, Lu, Cui, Lei, Lin, Ping, Liu, Zhaoyuan, Bao, Shujie, Ma, Xiaolong, Nan, Haitao, Zhu, Wencheng, Cen, Jin, Mao, Yunuo et al. · 2023 · Cell Stem Cell
52. Clonal evolution underlying leukemia progression and Richter transformation in patients with ibrutinib-relapsed CLL
    Kadri, Sabah, Lee, Jimmy, Fitzpatrick, Carrie, Galanina, Natalie, Sukhanova, Madina, Venkataraman, Girish, Sharma, Shruti, Long, Brad, Petras, Kristin, Theissen, Megan et al. · 2017 · Blood Advances
53. Genomic landscape of oxidative DNA damage and repair reveals regioselective protection from mutagenesis
    Poetsch, Anna R., Boulton, Simon J., Luscombe, Nicholas M. · 2018 · Genome Biology
54. Intraductal papillary mucinous neoplasms arise from multiple independent clones, each with distinct mutations
    Fischer, Catherine G., Beleva Guthrie, Violeta, Braxton, Alicia M., Zheng, Lily, Wang, Pei, Song, Qianqian, Griffin, James F., Chianchiano, Peter E., Hosoda, Waki, Niknafs, Noushin et al. · 2019 · Gastroenterology
55. Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris
    Muñoz, José F, Welsh, Rory M, Shea, Terrance, Batra, Dhwani, Gade, Lalitha, Howard, Dakota, Rowe, Lori A, Meis, Jacques F, Litvintseva, Anastasia P, Cuomo, Christina A · 2021 · Genetics
56. Lkb1 inactivation drives lung cancer lineage switching governed by Polycomb Repressive Complex 2
    Zhang, Haikuo, Fillmore Brainson, Christine, Koyama, Shohei, Redig, Amanda J., Chen, Ting, Li, Shuai, Gupta, Manav, Garcia-de-Alba, Carolina, Paschini, Margherita, Herter-Sprie, Grit S. et al. · 2017 · Nature Communications
57. Refinement of the androgen response element based on ChIP-seq in androgen-insensitive and androgen-responsive prostate cancer cell lines
    Wilson, Stephen, Qi, Jianfei, Filipp, Fabian V. · 2016 · Scientific Reports
58. Phosphatidylinositol 3-kinase δ blockade increases genomic instability in B cells
    Compagno, Mara, Wang, Qi, Pighi, Chiara, Cheong, Taek-Chin, Meng, Fei-Long, Poggio, Teresa, Yeap, Leng-Siew, Karaca, Elif, Blasco, Rafael B., Langellotto, Fernanda et al. · 2017 · Nature
59. Widespread activation of developmental gene expression characterized by PRC1-dependent chromatin looping
    Loubiere, V., Papadopoulos, G. L., Szabo, Q., Martinez, A-M., Cavalli, G. · 2020 · Science Advances
60. Genome plasticity in Candida albicans is driven by long repeat sequences
    Todd, Robert T, Wikoff, Tyler D, Forche, Anja, Selmecki, Anna · 2019 · eLife
61. A homeostatic Arid1a-dependent permissive chromatin state licenses hepatocyte responsiveness to liver-injury-associated YAP signaling
    Li, Weiping, Yang, Liguang, He, Qiang, Hu, Chaobo, Zhu, Linying, Ma, Xiaolong, Ma, Xueyan, Bao, Shujie, Li, Lu, Chen, Yingying et al. · 2019 · Cell Stem Cell
62. Integrative phenotyping framework (iPF): integrative clustering of multiple omics data identifies novel lung disease subphenotypes
    Kim, SungHwan, Herazo-Maya, Jose D., Kang, Dongwan D., Juan-Guardela, Brenda M., Tedrow, John, Martinez, Fernando J., Sciurba, Frank C., Tseng, George C., Kaminski, Naftali · 2015 · BMC Genomics
63. Incorporation of a nucleoside analog maps genome repair sites in postmitotic human neurons
    Reid, Dylan A., Reed, Patrick J., Schlachetzki, Johannes C. M., Nitulescu, Ioana I., Chou, Grace, Tsui, Enoch C., Jones, Jeffrey R., Chandran, Sahaana, Lu, Ake T., McClain, Claire A. et al. · 2021 · Science
64. A comprehensive study of the genetic impact of rare variants in SORL1 in European early-onset Alzheimer’s disease
    Verheijen, Jan, Van den Bossche, Tobi, van der Zee, Julie, Engelborghs, Sebastiaan, Sanchez-Valle, Raquel, Lladó, Albert, Graff, Caroline, Thonberg, Håkan, Pastor, Pau, Ortega-Cubero, Sara et al. · 2016 · Acta Neuropathologica
65. IL-33-PU.1 Transcriptome Reprogramming Drives Functional State Transition and Clearance Activity of Microglia in Alzheimer’s Disease
    Lau, Shun-Fat, Chen, Congping, Fu, Wing-Yu, Qu, Jianan Y., Cheung, Tom H., Fu, Amy K.Y., Ip, Nancy Y. · 2020 · Cell Reports
66. Niche stiffening compromises hair follicle stem cell potential during ageing by reducing bivalent promoter accessibility
    Koester, Janis, Miroshnikova, Yekaterina A., Ghatak, Sushmita, Chacón-Martínez, Carlos Andrés, Morgner, Jessica, Li, Xinping, Atanassov, Ilian, Altmüller, Janine, Birk, David E., Koch, Manuel et al. · 2021 · Nature Cell Biology
67. Plant pan-genomics comes of age
    Lei, Li, Goltsman, Eugene, Goodstein, David, Wu, Guohong Albert, Rokhsar, Daniel S., Vogel, John P. · 2021 · Annual Review of Plant Biology
68. Control of human hemoglobin switching by LIN28B-mediated regulation of BCL11A translation
    Basak, Anindita, Munschauer, Mathias, Lareau, Caleb A., Montbleau, Kara E., Ulirsch, Jacob C., Hartigan, Christina R., Schenone, Monica, Lian, John, Wang, Yaomei, Huang, Yumin et al. · 2020 · Nature Genetics
69. Dynamic changes in the Streptococcus pneumoniae transcriptome during transition from biofilm formation to invasive disease upon influenza A virus infection
    Pettigrew, Melinda M., Marks, Laura R., Kong, Yong, Gent, Janneane F., Roche-Hakansson, Hazeline, Hakansson, Anders P. · 2014 · Infection and Immunity
70. Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions
    Pugacheva, Elena M., Rivero-Hinojosa, Samuel, Espinoza, Celso A., Méndez-Catalá, Claudia Fabiola, Kang, Sungyun, Suzuki, Teruhiko, Kosaka-Suzuki, Natsuki, Robinson, Susan, Nagarajan, Vijayaraj, Ye, Zhen et al. · 2015 · Genome biology
71. Short DNA Hairpins Compromise Recombinant Adeno-Associated Virus Genome Homogeneity
    Xie, Jun, Mao, Qin, Tai, Phillip W.L., He, Ran, Ai, Jianzhong, Su, Qin, Zhu, Ye, Ma, Hong, Li, Jia, Gong, Shoufang et al. · 2017 · Molecular Therapy
72. Improved gRNA secondary structures allow editing of target sites resistant to CRISPR-Cas9 cleavage
    Riesenberg, Stephan, Helmbrecht, Nelly, Kanis, Philipp, Maricic, Tomislav, Pääbo, Svante · 2022 · Nature Communications
73. A tissue injury sensing and repair pathway distinct from host pathogen defense
    Liu, Siqi, Hur, Yun Ha, Cai, Xin, Cong, Qian, Yang, Yihao, Xu, Chiwei, Bilate, Angelina M., Gonzales, Kevin Andrew Uy, Parigi, S. Martina, Cowley, Christopher J. et al. · 2023 · Cell
74. Mutation rates, spectra, and genome-wide distribution of spontaneous mutations in mismatch repair deficient yeast.
    Lang, Gregory I, Parsons, Lance, Gammie, Alison E · 2013 · G3 Genes Genomes Genetics
75. Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability
    McDermott, Jason E., Arshad, Osama A., Petyuk, Vladislav A., Fu, Yi, Gritsenko, Marina A., Clauss, Therese R., Moore, Ronald J., Schepmoes, Athena A., Zhao, Rui, Monroe, Matthew E. et al. · 2020 · Cell Reports Medicine
76. KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans
    Gacek-Matthews, Agnieszka, Berger, Harald, Sasaki, Takahiko, Wittstein, Kathrin, Gruber, Clemens, Lewis, Zachary A., Strauss, Joseph · 2016 · PLOS Genetics
77. Epigenomic map of human liver reveals principles of zonated morphogenic and metabolic control
    Brosch, Mario, Kattler, Kathrin, Herrmann, Alexander, von Schönfels, Witigo, Nordström, Karl, Seehofer, Daniel, Damm, Georg, Becker, Thomas, Zeissig, Sebastian, Nehring, Sophie et al. · 2018 · Nature Communications
78. Adeno-associated Virus Genome Population Sequencing Achieves Full Vector Genome Resolution and Reveals Human-Vector Chimeras
    Tai, Phillip W.L., Xie, Jun, Fong, Kaiyuen, Seetin, Matthew, Heiner, Cheryl, Su, Qin, Weiand, Michael, Wilmot, Daniella, Zapp, Maria L., Gao, Guangping · 2018 · Molecular Therapy - Methods & Clinical Development
79. Distributive Conjugal Transfer in Mycobacteria Generates Progeny with Meiotic-Like Genome-Wide Mosaicism, Allowing Mapping of a Mating Identity Locus
    Gray, Todd A., Krywy, Janet A., Harold, Jessica, Palumbo, Michael J., Derbyshire, Keith M. · 2013 · PLoS Biology
80. Analytical tools and current challenges in the modern era of neuroepigenomics
    Maze, Ian, Shen, Li, Zhang, Bin, Garcia, Benjamin A, Shao, Ningyi, Mitchell, Amanda, Sun, HaoSheng, Akbarian, Schahram, Allis, C David, Nestler, Eric J · 2014 · Nature Neuroscience
81. Mutant KRAS Circulating Tumor DNA Is an Accurate Tool for Pancreatic Cancer Monitoring
    Perets, Ruth, Greenberg, Orli, Shentzer, Talia, Semenisty, Valeria, Epelbaum, Ron, Bick, Tova, Sarji, Shada, Ben-Izhak, Ofer, Sabo, Edmond, Hershkovitz, Dov · 2018 · The Oncologist
82. Genome Analysis of Latin American Cervical Cancer: Frequent Activation of the PIK3CA Pathway
    Lou, Hong, Villagran, Guillermo, Boland, Joseph F., Im, Kate M., Polo, Sarita, Zhou, Weiyin, Odey, Ushie, Juárez-Torres, Eligia, Medina-Martínez, Ingrid, Roman-Basaure, Edgar et al. · 2015 · Clinical Cancer Research
83. HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes
    Hennig, Thomas, Michalski, Marco, Rutkowski, Andrzej J., Djakovic, Lara, Whisnant, Adam W., Friedl, Marie-Sophie, Jha, Bhaskar Anand, Baptista, Marisa A. P., L’Hernault, Anne, Erhard, Florian et al. · 2018 · PLOS Pathogens
84. Genes, behavior and next‐generation RNA sequencing
    Hitzemann, R., Bottomly, D., Darakjian, P., Walter, N., Iancu, O., Searles, R., Wilmot, B., McWeeney, S. · 2013 · Genes, Brain and Behavior
85. ATRX is a regulator of therapy induced senescence in human cells
    Kovatcheva, Marta, Liao, Will, Klein, Mary E., Robine, Nicolas, Geiger, Heather, Crago, Aimee M., Dickson, Mark A., Tap, William D., Singer, Samuel, Koff, Andrew · 2017 · Nature Communications
86. Association of a common genetic variant with Parkinson’s disease is mediated by microglia
    Langston, Rebekah G., Beilina, Alexandra, Reed, Xylena, Kaganovich, Alice, Singleton, Andrew B., Blauwendraat, Cornelis, Gibbs, J. Raphael, Cookson, Mark R. · 2022 · Science Translational Medicine
87. An intronic VNTR affects splicing of ABCA7 and increases risk of Alzheimer’s disease
    On Behalf of the BELNEU Consortium, De Roeck, Arne, Duchateau, Lena, Van Dongen, Jasper, Cacace, Rita, Bjerke, Maria, Van den Bossche, Tobi, Cras, Patrick, Vandenberghe, Rik, De Deyn, Peter P. et al. · 2018 · Acta Neuropathologica
88. Enhancing face validity of mouse models of Alzheimer’s disease with natural genetic variation
    Onos, Kristen D., Uyar, Asli, Keezer, Kelly J., Jackson, Harriet M., Preuss, Christoph, Acklin, Casey J., O’Rourke, Rita, Buchanan, Rebecca, Cossette, Travis L., Sukoff Rizzo, Stacey J. et al. · 2019 · PLOS Genetics
89. Structural evidence for Scc4-dependent localization of cohesin loading
    Hinshaw, Stephen M, Makrantoni, Vasso, Kerr, Alastair, Marston, Adèle L, Harrison, Stephen C · 2015 · eLife
90. Forward and reverse genetic dissection of morphogenesis identifies filament-competent Candida auris strains
    Santana, Darian J., O’Meara, Teresa R. · 2021 · Nature Communications
91. The Suf iron–sulfur cluster biosynthetic system is essential in Staphylococcus aureus, and decreased Suf function results in global metabolic defects and reduced survival in human neutrophils
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