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Identification of Genes Periodically Expressed in the Human Cell Cycle and Their Expression in Tumors

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Cell Wall Integrity Signaling in Saccharomyces cerevisiae

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Single-RNA counting reveals alternative modes of gene expression in yeast

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Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae

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Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System

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Genomic Expression Responses to DNA-damaging Agents and the Regulatory Role of the Yeast ATR Homolog Mec1p

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High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling

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Chitin synthesis and fungal pathogenesis

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Comparison of co-expression measures: mutual information, correlation, and model based indices

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Transcriptional regulation and function during the human cell cycle

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Understanding network concepts in modules

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Genome-wide Analysis of Gene Expression Regulated by the Calcineurin/Crz1p Signaling Pathway in Saccharomyces cerevisiae

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A New Coefficient of Correlation

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Integrating regulatory motif discovery and genome-wide expression analysis

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A genomewide oscillation in transcription gates DNA replication and cell cycle

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Regulatory Networks Revealed by Transcriptional Profiling of Damaged Saccharomyces cerevisiae Cells: Rpn4 Links Base Excision Repair with Proteasomes

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Inferring gene networks from time series microarray data using dynamic Bayesian networks

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TimeDelay-ARACNE: reverse engineering of gene networks from time-course data by an information theoretic approach

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Growth control of the eukaryote cell: a systems biology study in yeast

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Impulse Control: Temporal Dynamics in Gene Transcription

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The evolution of combinatorial gene regulation in fungi

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Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data

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Phagocytosis by neutrophils induces an amino acid deprivation response in Saccharomyces cerevisiae and Candida albicans

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Post-transcriptional regulation across human tissues

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Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments

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Review on statistical methods for gene network reconstruction using expression data

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Identification of cell cycle-regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors

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Cellular Noise Regulons Underlie Fluctuations in Saccharomyces cerevisiae

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Dissection of Regulatory Networks that Are Altered in Disease via Differential Co-expression

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Candida albicans transcription factor Rim101 mediates pathogenic interactions through cell wall functions

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Driving the cell cycle through metabolism

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Stress-Dependent Dynamics of Global Chromatin Remodeling in Yeast: Dual Role for SWI/SNF in the Heat Shock Stress Response

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A transcriptional profile of multicellular development in Dictyostelium discoideum

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Rtt106p is a histone chaperone involved in heterochromatin-mediated silencing

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Acetyl-CoA induces transcription of the key G1 cyclin CLN3 to promote entry into the cell division cycle in Saccharomyces cerevisiae

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Transcriptional Coregulation by the Cell Integrity Mitogen-Activated Protein Kinase Slt2 and the Cell Cycle Regulator Swi4

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A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data

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The histone methyltransferase Dot1/DOT1L as a critical regulator of the cell cycle

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Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action

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Regulation of Histone Gene Expression in Budding Yeast

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Cell Cycle–Specified Fluctuation of Nucleosome Occupancy at Gene Promoters

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SVDMAN—singular value decomposition analysis of microarray data

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Metabolic-State-Dependent Remodeling of the Transcriptome in Response to Anoxia and Subsequent Reoxygenation in Saccharomyces cerevisiae

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The genome-wide expression response to telomerase deletion in Saccharomyces cerevisiae

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A Survey of Transfer and Multitask Learning in Bioinformatics

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Translate to divide: сontrol of the cell cycle by protein synthesis

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Global transcriptome analysis of genetically identified neurons in the adult cortex

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Cell Cycle-dependent Degradation of the Saccharomyces cerevisiae Spindle Motor Cin8p Requires APCCdh1and a Bipartite Destruction Sequence

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Perspectives on the DNA damage and replication checkpoint responses in Saccharomyces cerevisiae

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The G2 DNA Damage Checkpoint Delays Expression of Genes Encoding Mitotic Regulators

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Transcriptional Analysis of the Candida albicans Cell Cycle

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Identification of promoter elements responsible for the regulation of MDR1 from Candida albicans, a major facilitator transporter involved in azole resistance

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GOLEM: an interactive graph-based gene-ontology navigation and analysis tool

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Gene Expression Patterns in the Hypoxic Murine Placenta: A Role in Epigenesis?

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Clustered nuclei maintain autonomy and nucleocytoplasmic ratio control in a syncytium

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Prediction of Genetic Interactions Using Machine Learning and Network Properties

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Dynamic Networks from Hierarchical Bayesian Graph Clustering

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The Saccharomyces cerevisiae RAD9 cell cycle checkpoint gene is required for optimal repair of UV-induced pyrimidine dimers in both G1 and G2/M phases of the cell cycle

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The Saccharomyces cerevisiae Histone Chaperone Rtt106 Mediates the Cell Cycle Recruitment of SWI/SNF and RSC to the HIR-Dependent Histone Genes

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Orthologues of the Anaphase-Promoting Complex/Cyclosome Coactivators Cdc20p and Cdh1p Are Important for Mitotic Progression and Morphogenesis in Candida albicans

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Positional artifacts in microarrays: experimental verification and construction of COP, an automated detection tool

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Post-transcriptional regulation across human tissues

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Computational challenges of cell cycle analysis using single cell transcriptomics

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Cargo adaptors use a handhold mechanism to engage with myosin V for organelle transport

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