The DOI matches its Crossref record.
MrBayes 3: Bayesian phylogenetic inference under mixed models
Open accessAbstract
Summary: MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types—e.g. morphological, nucleotide, and protein—and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters. Availability: http://morphbank.ebc.uu.se/mrbayes Contact: fredrik.ronquist@ebc.uu.se * To whom correspondence should be addressed.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cited by
Items 101–200 of 208
Doyle, V. P., Oudemans, P. V., Rehner, S. A., & Litt, A. (2013) · PLoS ONE · doi:10.1371/journal.pone.0062394 · Cited by 134
Presnell, J. S., Schnitzler, C. E., & Browne, W. E. (2015) · Genome Biology and Evolution · doi:10.1093/gbe/evv141 · Cited by 119
Schnitzler, C. E., Pang, K., Powers, M. L., Reitzel, A. M., Ryan, J. F., Simmons, D., Tada, T., Park, M., Gupta, J., Brooks, S. Y., et al. (2012) · BMC Biology · doi:10.1186/1741-7007-10-107 · Cited by 132
Le Roy, N., Jackson, D. J., Marie, B., Ramos-Silva, P., & Marin, F. (2014) · Frontiers in Zoology · doi:10.1186/s12983-014-0075-8 · Cited by 131
Paleoproterozoic sterol biosynthesis and the rise of oxygen
Gold, D. A., Caron, A., Fournier, G. P., & Summons, R. E. (2017) · Nature · doi:10.1038/nature21412 · Cited by 129
Statham, M. J., Murdoch, J., Janecka, J., Aubry, K. B., Edwards, C. J., Soulsbury, C. D., Berry, O., Wang, Z., Harrison, D., Pearch, M., et al. (2014) · Molecular Ecology · doi:10.1111/mec.12898 · Cited by 117
Mayden, R. L., Tang, K. L., Conway, K. W., Freyhof, J., Chamberlain, S., Haskins, M., Schneider, L., Sudkamp, M., Wood, R. M., Agnew, M., et al. (2007) · Journal of Experimental Zoology Part B: Molecular and Developmental Evolution · doi:10.1002/jez.b.21175 · Cited by 125
A fully resolved genus level phylogeny of neotropical primates (Platyrrhini)
Wildman, D. E., Jameson, N. M., Opazo, J. C., & Yi, S. V. (2009) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2009.07.019 · Cited by 122
Jayawardena, R. S., Hyde, K. D., Chen, Y. J., Papp, V., Palla, B., Papp, D., Bhunjun, C. S., Hurdeal, V. G., Senwanna, C., Manawasinghe, I. S., et al. (2020) · Fungal Diversity · doi:10.1007/s13225-020-00460-8 · Cited by 122
Phylogeny of Sarocladium (Hypocreales)
Giraldo, A., Gené, J., Sutton, D. A., Madrid, H., de Hoog, G. S., Cano, J., Decock, C., Crous, P. W., & Guarro, J. (2015) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/003158515x685364 · Cited by 119
Evolution of heteromeric nitrilase complexes in Poaceae with new functions in nitrile metabolism
Jenrich, R., Trompetter, I., Bak, S., Olsen, C. E., Møller, B. L., & Piotrowski, M. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0709315104 · Cited by 118
Baalsrud, H. T., Tørresen, O. K., Solbakken, M. H., Salzburger, W., Hanel, R., Jakobsen, K. S., & Jentoft, S. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msx311 · Cited by 116
Genomic insights into Wnt signaling in an early diverging metazoan, the ctenophore Mnemiopsis leidyi
Pang, K., Ryan, J. F., Program, N. C. S., Mullikin, J. C., Baxevanis, A. D., & Martindale, M. Q. (2010) · EvoDevo · doi:10.1186/2041-9139-1-10 · Cited by 115
Bian, C., Hu, Y., Ravi, V., Kuznetsova, I. S., Shen, X., Mu, X., Sun, Y., You, X., Li, J., Li, X., et al. (2016) · Scientific Reports · doi:10.1038/srep24501 · Cited by 107
Pisani, D. (2004) · Systematic Biology · doi:10.1080/10635150490888877 · Cited by 107
Jiang, P., Faase, J. A. J., Toyoda, H., Paul, A., Wimmer, E., & Gorbalenya, A. E. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0700451104 · Cited by 105
Davies, K. T. J., Cotton, J. A., Kirwan, J. D., Teeling, E. C., & Rossiter, S. J. (2012) · Heredity · doi:10.1038/hdy.2011.119 · Cited by 105
Bragança, C. A. D., Damm, U., Baroncelli, R., Massola Júnior, N. S., & Crous, P. W. (2016) · Fungal Biology · doi:10.1016/j.funbio.2016.01.011 · Cited by 102
Diverse species of Colletotrichum associated with grapevine anthracnose in China
Yan, J.-Y., Jayawardena, M. M. R. S., Goonasekara, I. D., Wang, Y., Zhang, W., Liu, M., Huang, J.-B., Wang, Z.-Y., Shang, J.-J., Peng, Y.-L., et al. (2015) · Fungal Diversity · doi:10.1007/s13225-014-0310-9 · Cited by 100
Dahlbäck, M., Rask, T. S., Andersen, P. H., Nielsen, M. A., Ndam, N. T., Resende, M., Turner, L., Deloron, P., Hviid, L., Lund, O., et al. (2006) · PLoS Pathogens · doi:10.1371/journal.ppat.0020124 · Cited by 98
Whole-Genome Duplication and the Functional Diversification of Teleost Fish Hemoglobins
Opazo, J. C., Butts, G. T., Nery, M. F., Storz, J. F., & Hoffmann, F. G. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mss212 · Cited by 98
Brochier-Armanet, C., & Forterre, P. (2007) · Archaea · doi:10.1155/2006/582916 · Cited by 97
Monroe, E. A., & Van Dolah, F. M. (2008) · Protist · doi:10.1016/j.protis.2008.02.004 · Cited by 93
Evolution of the TGF-β Signaling Pathway and Its Potential Role in the Ctenophore, Mnemiopsis leidyi
Pang, K., Ryan, J. F., Baxevanis, A. D., & Martindale, M. Q. (2011) · PLoS ONE · doi:10.1371/journal.pone.0024152 · Cited by 93
Accelerated diversification explains the exceptional species richness of tropical characoid fishes
Melo, B. F., Sidlauskas, B. L., Near, T. J., Roxo, F. F., Ghezelayagh, A., Ochoa, L. E., Stiassny, M. L. J., Arroyave, J., Chang, J., Faircloth, B. C., et al. (2021) · Systematic Biology · doi:10.1093/sysbio/syab040 · Cited by 93
Pauls, S. U., Graf, W., Haase, P., Lumbsch, H. T., & Waringer, J. (2008) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2007.11.003 · Cited by 92
“1 (Ronquist and Huelsenbeck, 2003) with gaps treated as missing data.”
BackgroundMethodInfluentialPhylogeny of Zebrafish, a “Model Species,” within Danio, a “Model Genus”
McCluskey, B. M., & Postlethwait, J. H. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msu325 · Cited by 90
Murray, S. A., Garby, T., Hoppenrath, M., & Neilan, B. A. (2012) · PLoS ONE · doi:10.1371/journal.pone.0038253 · Cited by 90
A Population Genetics-Phylogenetics Approach to Inferring Natural Selection in Coding Sequences
Wilson, D. J., Hernandez, R. D., Andolfatto, P., & Przeworski, M. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002395 · Cited by 85
Peres, N. A., MacKenzie, S. J., Peever, T. L., & Timmer, L. W. (2008) · Phytopathology® · doi:10.1094/phyto-98-3-0345 · Cited by 81
Likelihood reinstates Archaeopteryx as a primitive bird
Lee, M. S. Y., & Worthy, T. H. (2012) · Biology Letters · doi:10.1098/rsbl.2011.0884 · Cited by 80
Allopatric speciation within a cryptic species complex of Australasian octopuses
Amor, M. D., Norman, M. D., Cameron, H. E., & Strugnell, J. M. (2014) · PLoS ONE · doi:10.1371/journal.pone.0098982 · Cited by 79
Bonett, R. M., Steffen, M. A., Lambert, S. M., Wiens, J. J., & Chippindale, P. T. (2014) · Evolution · doi:10.1111/evo.12274 · Cited by 79
Wu, Y.-C., Rasmussen, M. D., Bansal, M. S., & Kellis, M. (2014) · Genome Research · doi:10.1101/gr.161968.113 · Cited by 77
Developmental expression of homeobox genes in the ctenophore Mnemiopsis leidyi
Pang, K., & Martindale, M. Q. (2008) · Development Genes and Evolution · doi:10.1007/s00427-008-0222-3 · Cited by 70
Livistona palms in Australia: ancient relics or opportunistic immigrants?
Crisp, M. D., Isagi, Y., Kato, Y., Cook, L. G., & Bowman, D. M. J. S. (2010) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2009.09.020 · Cited by 72
Origin and evolution of plexins, semaphorins, and Met receptor tyrosine kinases
Junqueira Alves, C., Yotoko, K., Zou, H., & Friedel, R. H. (2019) · Scientific Reports · doi:10.1038/s41598-019-38512-y · Cited by 72
New genomic data and analyses challenge the traditional vision of animal epithelium evolution
Belahbib, H., Renard, E., Santini, S., Jourda, C., Claverie, J.-M., Borchiellini, C., & Le Bivic, A. (2018) · BMC Genomics · doi:10.1186/s12864-018-4715-9 · Cited by 71
do Amaral, F. R., Sheldon, F. H., Gamauf, A., Haring, E., Riesing, M., Silveira, L. F., & Wajntal, A. (2009) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2009.07.020 · Cited by 69
Novel Insights into Evolution of Protistan Polyketide Synthases through Phylogenomic Analysis
John, U., Beszteri, B., Derelle, E., Van de Peer, Y., Read, B., Moreau, H., & Cembella, A. (2008) · Protist · doi:10.1016/j.protis.2007.08.001 · Cited by 69
Barber, N. A., Jones, H. P., Duvall, M. R., Wysocki, W. P., Hansen, M. J., & Gibson, D. J. (2017) · Journal of Applied Ecology · doi:10.1111/1365-2664.12639 · Cited by 67
A Novel Type of Kleptoplastidy in (Dinophyceae): Presence of Haptophyte-type Plastid in
KOIKE, K. (2005) · Protist · doi:10.1016/j.protis.2005.04.002 · Cited by 67
Kobayashi, K., Masuda, T., Tajima, N., Wada, H., & Sato, N. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu170 · Cited by 65
Voigt, O., Adamski, M., Sluzek, K., & Adamska, M. (2014) · BMC Evolutionary Biology · doi:10.1186/s12862-014-0230-z · Cited by 63
Analysis of cytoskeletal and motility proteins in the sea urchin genome assembly
Morris, R. L., Hoffman, M. P., Obar, R. A., McCafferty, S. S., Gibbons, I. R., Leone, A. D., Cool, J., Allgood, E. L., Musante, A. M., Judkins, K. M., et al. (2006) · Developmental Biology · doi:10.1016/j.ydbio.2006.08.052 · Cited by 60
Genomic evidence for independent origins of β-like globin genes in monotremes and therian mammals
Opazo, J. C., Hoffmann, F. G., & Storz, J. F. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0710531105 · Cited by 60
Colletotrichum incanum sp. nov., a curved-conidial species causing soybean anthracnose in USA
Yang, H.-C., Haudenshield, J. S., & Hartman, G. L. (2014) · Mycologia · doi:10.3852/13-013 · Cited by 60
Distinct evolutionary patterns of brain and body size during adaptive radiation
Gonzalez-Voyer, A., Winberg, S., & Kolm, N. (2009) · Evolution · doi:10.1111/j.1558-5646.2009.00705.x · Cited by 52
Yang, L., & Mayden, R. L. (2010) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2009.09.027 · Cited by 54
Raimondo, M. L., & Carlucci, A. (2018) · Plant Pathology · doi:10.1111/ppa.12766 · Cited by 54
Stampar, S. N., Maronna, M. M., Vermeij, M. J. A., Silveira, F. L. D., & Morandini, A. C. (2012) · PLoS ONE · doi:10.1371/journal.pone.0041091 · Cited by 50
Layden, M. J., Meyer, N. P., Pang, K., Seaver, E. C., & Martindale, M. Q. (2010) · EvoDevo · doi:10.1186/2041-9139-1-12 · Cited by 46
Ekman, S., & Blaalid, R. (2011) · Systematic Biology · doi:10.1093/sysbio/syr022 · Cited by 51
Assessment of substitution model adequacy using frequentist and Bayesian methods
Ripplinger, J., & Sullivan, J. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msq168 · Cited by 50
Ramšak, A., Stopar, K., & Malej, A. (2012) · Hydrobiologia · doi:10.1007/s10750-012-1053-9 · Cited by 50
Simion, P., Bekkouche, N., Jager, M., Quéinnec, E., & Manuel, M. (2015) · Zoology · doi:10.1016/j.zool.2014.06.004 · Cited by 46
A Screen for Gene Paralogies Delineating Evolutionary Branching Order of Early Metazoa
Erives, A., & Fritzsch, B. (2020) · G3 Genes|Genomes|Genetics · doi:10.1534/g3.119.400951 · Cited by 49
Crouch, J. A., Glasheen, B. M., Giunta, M. A., Clarke, B. B., & Hillman, B. I. (2008) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2007.08.004 · Cited by 48
Genetic Diversity in Oxytocin Ligands and Receptors in New World Monkeys
Ren, D., Lu, G., Moriyama, H., Mustoe, A. C., Harrison, E. B., & French, J. A. (2015) · PLOS ONE · doi:10.1371/journal.pone.0125775 · Cited by 47
Stepwise assembly of the Nova -regulated alternative splicing network in the vertebrate brain
Irimia, M., Denuc, A., Burguera, D., Somorjai, I., Martín-Durán, J. M., Genikhovich, G., Jimenez-Delgado, S., Technau, U., Roy, S. W., Marfany, G., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1012333108 · Cited by 47
Sensing and responding to energetic stress: Evolution of the AMPK network
Craig, P. M., Moyes, C. D., & LeMoine, C. M. R. (2018) · Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology · doi:10.1016/j.cbpb.2017.11.001 · Cited by 46
A genome-wide analysis of annexins from parasitic organisms and their vectors
Cantacessi, C., Seddon, J. M., Miller, T. L., Leow, C. Y., Thomas, L., Mason, L., Willis, C., Walker, G., Loukas, A., Gasser, R. B., et al. (2013) · Scientific Reports · doi:10.1038/srep02893 · Cited by 46
Pérez-Pardal, L., Sánchez-Gracia, A., Álvarez, I., Traoré, A., Ferraz, J. B. S., Fernández, I., Costa, V., Chen, S., Tapio, M., Cantet, R. J. C., et al. (2018) · Scientific Reports · doi:10.1038/s41598-018-36444-7 · Cited by 45
Peucker, A. J., Dann, P., & Burridge, C. P. (2009) · The Auk · doi:10.1525/auk.2009.08055 · Cited by 45
Pérez-Rodríguez, I., Bolognini, M., Ricci, J., Bini, E., & Vetriani, C. (2015) · The ISME Journal · doi:10.1038/ismej.2014.214 · Cited by 44
A likelihood method for detecting trait-dependent shifts in the rate of molecular evolution
Mayrose, I., & Otto, S. P. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msq263 · Cited by 43
Simmons, D. K., Pang, K., & Martindale, M. Q. (2012) · EvoDevo · doi:10.1186/2041-9139-3-2 · Cited by 38
Conserved meiotic genes point to sex in the Choanoflagellates
CARR, M., LEADBEATER, B. S. C., & BALDAUF, S. L. (2010) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2009.00450.x · Cited by 41
Genomic Signatures of Distributive Conjugal Transfer among Mycobacteria
Mortimer, T. D., & Pepperell, C. S. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu175 · Cited by 40
Nishitani, G., Nagai, S., Baba, K., Kiyokawa, S., Kosaka, Y., Miyamura, K., Nishikawa, T., Sakurada, K., Shinada, A., & Kamiyama, T. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.02566-09 · Cited by 38
Amor, M. D., Laptikhovsky, V., Norman, M. D., & Strugnell, J. M. (2017) · Journal of the Marine Biological Association of the United Kingdom · doi:10.1017/s0025315415000958 · Cited by 37
The mouth, the anus, and the blastopore—open questions about questionable openings
Hejnol, A., & Martindale, M. Q. (2009) · Animal Evolution · doi:10.1093/acprof:oso/9780199549429.003.0004 · Cited by 37
Interrelationships of chromalveolates within a broadly sampled tree of photosynthetic protists
Reeb, V. C., Peglar, M. T., Yoon, H. S., Bai, J. R., Wu, M., Shiu, P., Grafenberg, J. L., Reyes-Prieto, A., Rümmele, S. E., & Gross, J. (2009) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2009.04.012 · Cited by 35
Johnston, A. R., & Anthony, N. M. (2012) · BMC Evolutionary Biology · doi:10.1186/1471-2148-12-120 · Cited by 37
Li, X., Martinson, A. S., Layden, M. J., Diatta, F. H., Sberna, A. P., Simmons, D. K., Martindale, M. Q., & Jegla, T. J. (2015) · Journal of Experimental Biology · doi:10.1242/jeb.110080 · Cited by 36
Expanded Functional Diversity of Shaker K+ Channels in Cnidarians Is Driven by Gene Expansion
Jegla, T., Marlow, H. Q., Chen, B., Simmons, D. K., Jacobo, S. M., & Martindale, M. Q. (2012) · PLoS ONE · doi:10.1371/journal.pone.0051366 · Cited by 35
Isolation and molecular characterization of a second serotype of the encephalomyocarditis virus
Philipps, A., Dauber, M., Groth, M., Schirrmeier, H., Platzer, M., Krumbholz, A., Wutzler, P., & Zell, R. (2012) · Veterinary Microbiology · doi:10.1016/j.vetmic.2012.07.006 · Cited by 33
Maltsev, Y., Gusev, E., Maltseva, I., Kulikovskiy, M., Namsaraev, Z., Petrushkina, M., Filimonova, A., Sorokin, B., Golubeva, A., Butaeva, G., et al. (2018) · Algal Research · doi:10.1016/j.algal.2018.06.008 · Cited by 29
Three reciprocally monophyletic mtDNA lineages elucidate the taxonomic status of Grant’s gazelles
Lorenzen, E. D., Arctander, P., & Siegismund, H. R. (2008) · Conservation Genetics · doi:10.1007/s10592-007-9375-2 · Cited by 29
Hara, F., Yamashiro, K., Nemoto, N., Ohta, Y., Yokobori, S.-I., Yasunaga, T., Hisanaga, S.-I., & Yamagishi, A. (2007) · Journal of Bacteriology · doi:10.1128/jb.01454-06 · Cited by 29
Colletotrichum species complexes associated with crops in northern South America: a review
Guevara-Suarez, M., Cárdenas, M., Jiménez, P., Afanador-Kafuri, L., & Restrepo, S. (2022) · Agronomy · doi:10.3390/agronomy12030548 · Cited by 29
Nakajima, Y., Nishikawa, A., Iguchi, A., Nagata, T., Uyeno, D., Sakai, K., & Mitarai, S. (2017) · Coral Reefs · doi:10.1007/s00338-017-1557-x · Cited by 28
Maltsev, Y., Maltseva, I., Maltseva, S., Kociolek, J. P., & Kulikovskiy, M. (2019) · Journal of Phycology · doi:10.1111/jpy.12903 · Cited by 28
Detecting Signatures of Positive Selection along Defined Branches of a Population Tree Using LSD
Librado, P., & Orlando, L. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msy053 · Cited by 28
HAYWARD, A., MCMAHON, D. P., & KATHIRITHAMBY, J. (2011) · Molecular Ecology · doi:10.1111/j.1365-294x.2011.05010.x · Cited by 26
Natural history of SLC11 genes in vertebrates: tales from the fish world
Neves, J. V., Wilson, J. M., Kuhl, H., Reinhardt, R., Castro, L. F. C., & Rodrigues, P. N. (2011) · BMC Evolutionary Biology · doi:10.1186/1471-2148-11-106 · Cited by 24
Genomic, phylogenetic, and cell biological insights into metazoan origins
Nichols, S. A., Dayel, M. J., & King, N. (2009) · Animal Evolution · doi:10.1093/acprof:oso/9780199549429.003.0003 · Cited by 24
Macedo, D. M., Pereira, O. L., Hora Júnior, B. T., Weir, B. S., & Barreto, R. W. (2016) · Australasian Plant Pathology · doi:10.1007/s13313-015-0388-x · Cited by 24
Fusaro, A., Monne, I., Salomoni, A., Angot, A., Trolese, M., Ferrè, N., Mutinelli, F., Holmes, E. C., Capua, I., Lemey, P., et al. (2013) · Infection, Genetics and Evolution · doi:10.1016/j.meegid.2013.03.051 · Cited by 20
Evolution and Legacy of East Asian Aurochs
Hou, J., Guan, X., Xia, X., Lyu, Y., Liu, X., Mazei, Y., Xie, P., Chang, F., Zhang, X., Chen, J., et al. (2024) · Science Bulletin · doi:10.1016/j.scib.2024.09.016 · Cited by 22
A new genus for the Andean mice Akodon latebricola and A. bogotensis(Rodentia: Sigmodontinae)
Alvarado-Serrano, D. F., & D'Elía, G. (2013) · Journal of Mammalogy · doi:10.1644/12-mamm-a-276.1 · Cited by 22
Independent origins of the feather lice (Insecta:Degeeriella) of raptors: Raptor Lice Phylogeny
Catanach, T. A., & Johnson, K. P. (2015) · Biological Journal of the Linnean Society · doi:10.1111/bij.12453 · Cited by 22
Castillo, S., Srithayakumar, V., Meunier, V., & Kyle, C. J. (2010) · PLoS ONE · doi:10.1371/journal.pone.0012066 · Cited by 21
Lins, L. S. F., Trojahn, S., Sockell, A., Yee, M.-C., Tatarenkov, A., Bustamante, C. D., Earley, R. L., & Kelley, J. L. (2018) · Genome · doi:10.1139/gen-2017-0188 · Cited by 18
Theobald, D. L. (2011) · Biology Direct · doi:10.1186/1745-6150-6-60 · Cited by 16
“Second, one can rather easily estimate an upper bound for the effect of alignment bias by randomly permuting the sequences, realigning them, and performing the model selection tests with PhyML [119] or MrBayes.”
MethodInfluentialBabb, P. L., Fernandez-Duque, E., & Schurr, T. G. (2015) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2015.05.006 · Cited by 16
Chethana, C. S., Chowdappa, P., Biju, C. N., Praveena, R., & Sujatha, A. M. (2016) · European Journal of Plant Pathology · doi:10.1007/s10658-016-0931-9 · Cited by 14
Iorio, R., Šlapeta, J., Otranto, D., Paoletti, B., Giangaspero, A., & Traversa, D. (2009) · Parasitology Research · doi:10.1007/s00436-008-1276-x · Cited by 13
DDRprot: a database of DNA damage response-related proteins
Andrés-León, E., Cases, I., Arcas, A., & Rojas, A. M. (2016) · Database · doi:10.1093/database/baw123 · Cited by 12
Metadata
- Authors
- Ronquist, F., & Huelsenbeck, J. P.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-08-12
- Volume
- 19
- Issue
- 12
- Pages
- 1572-1574
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2146058063
- Cited by
- 29,077
- References
- 0
- FWCI
- 113.34
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.