limma powers differential expression analyses for RNA-sequencing and microarray studies

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1. SOMAscan Proteomics Identifies Serum Biomarkers Associated With Liver Fibrosis in Patients With NASH
   Luo, Yi, Wadhawan, Samir, Greenfield, Alex, Decato, Benjamin E., Oseini, Abdul M., Collen, Rebecca, Shevell, Diane E., Thompson, John, Jarai, Gabor, Charles, Edgar D. et al. · 2021 · Hepatology Communications
2. Decreased lipidated ApoE‐receptor interactions confer protection against pathogenicity of ApoE and its lipid cargoes in lysosomes
   Guo, Jing L., Braun, Dylan, Fitzgerald, Gabriel A., Hsieh, Yun-Ting, Rougé, Lionel, Litvinchuk, Alexandra, Steffek, Micah, Propson, Nicholas E., Heffner, Catherine M., Discenza, Claire et al. · 2025 · Cell
3. Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis
   Ding, Song-Lin, Yao, Zizhen, Hirokawa, Karla E., Nguyen, Thuc Nghi, Graybuck, Lucas T., Fong, Olivia, Bohn, Phillip, Ngo, Kiet, Smith, Kimberly A., Koch, Christof et al. · 2020 · Cell Reports
4. Dual leucine zipper kinase-dependent PERK activation contributes to neuronal degeneration following insult
   Larhammar, Martin, Huntwork-Rodriguez, Sarah, Jiang, Zhiyu, Solanoy, Hilda, Sengupta Ghosh, Arundhati, Wang, Bei, Kaminker, Joshua S, Huang, Kevin, Eastham-Anderson, Jeffrey, Siu, Michael et al. · 2017 · eLife
5. Dual inhibition of KRASG12D and pan-ERBB is synergistic in pancreatic ductal adenocarcinoma
   Gulay, Kevin Christian Montecillo, Zhang, Xinlian, Pantazopoulou, Vasiliki, Patel, Jay, Esparza, Edgar, Pran Babu, Deepa Sheik, Ogawa, Satoshi, Weitz, Jonathan, Ng, Isabella, Mose, Evangeline S. et al. · 2023 · Cancer Research
6. An optimized quantitative proteomics method establishes the cell type‐resolved mouse brain secretome
   Tüshaus, Johanna, Müller, Stephan A, Kataka, Evans Sioma, Zaucha, Jan, Sebastian Monasor, Laura, Su, Minhui, Güner, Gökhan, Jocher, Georg, Tahirovic, Sabina, Frishman, Dmitrij et al. · 2020 · The EMBO Journal
7. ROTS: reproducible RNA-seq biomarker detector—prognostic markers for clear cell renal cell cancer
   Seyednasrollah, Fatemeh, Rantanen, Krista, Jaakkola, Panu, Elo, Laura L. · 2016 · Nucleic Acids Research
8. Comprehensive Analysis Revealed that CDKN2A is a Biomarker for Immune Infiltrates in Multiple Cancers
   Chen, Zheng, Guo, Yingjie, Zhao, Da, Zou, Quan, Yu, Fusheng, Zhang, Lijun, Xu, Lei · 2021 · Frontiers in Cell and Developmental Biology
9. Reactivating TP53 signaling by the novel MDM2 inhibitor DS-3032b as a therapeutic option for high-risk neuroblastoma
   Arnhold, Viktor, Schmelz, Karin, Proba, Jutta, Winkler, Annika, Wünschel, Jasmin, Toedling, Joern, Deubzer, Hedwig E., Künkele, Annette, Eggert, Angelika, Schulte, Johannes H. et al. · 2018 · Oncotarget
10. Adipose stem cell niche reprograms the colorectal cancer stem cell metastatic machinery
    Di Franco, Simone, Bianca, Paola, Sardina, Davide Stefano, Turdo, Alice, Gaggianesi, Miriam, Veschi, Veronica, Nicotra, Annalisa, Mangiapane, Laura Rosa, Lo Iacono, Melania, Pillitteri, Irene et al. · 2021 · Nature Communications
11. Medulloblastoma group 3 and 4 tumors comprise a clinically and biologically significant expression continuum reflecting human cerebellar development
    Williamson, Daniel, Schwalbe, Edward C., Hicks, Debbie, Aldinger, Kimberly A., Lindsey, Janet C., Crosier, Stephen, Richardson, Stacey, Goddard, Jack, Hill, Rebecca M., Castle, Jemma et al. · 2022 · Cell Reports
12. Integrative approach to sporadic Alzheimer’s disease: deficiency of TYROBP in cerebral Aβ amyloidosis mouse normalizes clinical phenotype and complement subnetwork molecular pathology without reducing Aβ burden
    Haure-Mirande, Jean-Vianney, Wang, Minghui, Audrain, Mickael, Fanutza, Tomas, Kim, Soong Ho, Heja, Szilvia, Readhead, Ben, Dudley, Joel T., Blitzer, Robert D., Schadt, Eric E. et al. · 2019 · Molecular Psychiatry
13. Integrated analysis of single cell transcriptomic data across conditions, technologies, and species
    Butler, Andrew, Satija, Rahul · 2017
14. A cross-species proteomic map reveals neoteny of human synapse development
    Wang, Li, Pang, Kaifang, Zhou, Li, Cebrián-Silla, Arantxa, González-Granero, Susana, Wang, Shaohui, Bi, Qiuli, White, Matthew L., Ho, Brandon, Li, Jiani et al. · 2023 · Nature
15. A cross-species proteomic map reveals neoteny of human synapse development
    Wang, Li, Pang, Kaifang, Zhou, Li, Cebrián-Silla, Arantxa, González-Granero, Susana, Wang, Shaohui, Bi, Qiuli, White, Matthew L., Ho, Brandon, Li, Jiani et al. · 2022
16. A multidimensional precision medicine approach identifies an autism subtype characterized by dyslipidemia
    Luo, Yuan, Eran, Alal, Palmer, Nathan, Avillach, Paul, Levy-Moonshine, Ami, Szolovits, Peter, Kohane, Isaac S. · 2020 · Nature Medicine
17. Sex-differential DNA methylation and associated regulation networks in human brain implicated in the sex-biased risks of psychiatric disorders
    Xia, Yan, Dai, Rujia, Wang, Kangli, Jiao, Chuan, Zhang, Chunling, Xu, Yuchen, Li, Honglei, Jing, Xi, Chen, Yu, Jiang, Yi et al. · 2021 · Molecular Psychiatry
18. Chromosome contacts in activated T cells identify autoimmune disease candidate genes
    Burren, Oliver S., Rubio García, Arcadio, Javierre, Biola-Maria, Rainbow, Daniel B., Cairns, Jonathan, Cooper, Nicholas J., Lambourne, John J., Schofield, Ellen, Castro Dopico, Xaquin, Ferreira, Ricardo C. et al. · 2017 · Genome Biology
19. Does prenatal stress shape postnatal resilience? An epigenome-wide study on violence and mental health in humans
    Serpeloni, Fernanda, Radtke, Karl M., Hecker, Tobias, Sill, Johanna, Vukojevic, Vanja, Assis, Simone G. de, Schauer, Maggie, Elbert, Thomas, Nätt, Daniel · 2019 · Frontiers in Genetics
20. Deciphering the decline of metabolic elasticity in aging and obesity
    Zhou, Qiuzhong, Yu, Lexiang, Cook, Joshua R., Qiang, Li, Sun, Lei · 2023 · Cell Metabolism
21. INPP5D regulates inflammasome activation in human microglia
    Chou, Vicky, Pearse, Richard V., Aylward, Aimee J., Ashour, Nancy, Taga, Mariko, Terzioglu, Gizem, Fujita, Masashi, Fancher, Seeley B., Sigalov, Alina, Benoit, Courtney R. et al. · 2023 · Nature Communications
22. Functional multi-organelle units control inflammatory lipid metabolism of macrophages
    Zimmermann, Julia A., Lucht, Kerstin, Stecher, Manuel, Badhan, Chahat, Glaser, Katharina M., Epple, Maximilian W., Koch, Lena R., Deboutte, Ward, Manke, Thomas, Ebnet, Klaus et al. · 2024 · Nature Cell Biology
23. Calreticulin exposure correlates with robust adaptive antitumor immunity and favorable prognosis in ovarian carcinoma patients
    Kasikova, Lenka, Hensler, Michal, Truxova, Iva, Skapa, Petr, Laco, Jan, Belicova, Lucie, Praznovec, Ivan, Vosahlikova, Sarka, Halaska, Michael J., Brtnicky, Tomas et al. · 2019 · Journal for ImmunoTherapy of Cancer
24. Computational methods for the integrative analysis of single-cell data
    Forcato, Mattia, Romano, Oriana, Bicciato, Silvio · 2021 · Briefings in Bioinformatics
25. Sex differences in DNA methylation of the cord blood are related to sex-bias psychiatric diseases
    Maschietto, Mariana, Bastos, Laura Caroline, Tahira, Ana Carolina, Bastos, Elen Pereira, Euclydes, Veronica Luiza Vale, Brentani, Alexandra, Fink, Günther, de Baumont, Angelica, Felipe-Silva, Aloísio, Francisco, Rossana Pulcineli Vieira et al. · 2017 · Scientific Reports
26. Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936
    Hillary, Robert F., McCartney, Daniel L., Harris, Sarah E., Stevenson, Anna J., Seeboth, Anne, Zhang, Qian, Liewald, David C., Evans, Kathryn L., Ritchie, Craig W., Tucker-Drob, Elliot M. et al. · 2019 · Nature Communications
27. Dissecting Murine Muscle Stem Cell Aging through Regeneration Using Integrative Genomic Analysis
    Shcherbina, Anna, Larouche, Jacqueline, Fraczek, Paula, Yang, Benjamin A., Brown, Lemuel A., Markworth, James F., Chung, Carolina H., Khaliq, Mehwish, de Silva, Kanishka, Choi, Jeongmoon J. et al. · 2020 · Cell Reports
28. Splice-Junction-Based Mapping of Alternative Isoforms in the Human Proteome
    Lau, Edward, Han, Yu, Williams, Damon R., Thomas, Cody T., Shrestha, Rajani, Wu, Joseph C., Lam, Maggie P.Y. · 2019 · Cell Reports
29. Initiation of hepatic stellate cell activation extends into chronic liver disease
    De Smet, Vincent, Eysackers, Nathalie, Merens, Vincent, Kazemzadeh Dastjerd, Mina, Halder, Georg, Verhulst, Stefaan, Mannaerts, Inge, van Grunsven, Leo A. · 2021 · Cell Death & Disease
30. Network modeling of single-cell omics data: challenges, opportunities, and progresses
    Blencowe, Montgomery, Arneson, Douglas, Ding, Jessica, Chen, Yen-Wei, Saleem, Zara, Yang, Xia · 2019 · Emerging Topics in Life Sciences
31. Defining and Targeting Adaptations to Oncogenic KRASG12C Inhibition Using Quantitative Temporal Proteomics
    Santana-Codina, Naiara, Chandhoke, Amrita Singh, Yu, Qijia, Małachowska, Beata, Kuljanin, Miljan, Gikandi, Ajami, Stańczak, Marcin, Gableske, Sebastian, Jedrychowski, Mark P., Scott, David A. et al. · 2020 · Cell Reports
32. Functional correlation of genome‐wide DNA methylation profiles in genetic neurodevelopmental disorders
    Levy, Michael A., Relator, Raissa, McConkey, Haley, Pranckeviciene, Erinija, Kerkhof, Jennifer, Barat‐Houari, Mouna, Bargiacchi, Sara, Biamino, Elisa, Palomares Bralo, María, Cappuccio, Gerarda et al. · 2022 · Human Mutation
33. DNA Hypomethylation in Blood Links <i>B3GALT4</i> and <i>ZADH2</i> to Alzheimer’s Disease
    Madrid, Andy, Hogan, Kirk J., Papale, Ligia A., Clark, Lindsay R., Asthana, Sanjay, Johnson, Sterling C., Alisch, Reid S. · 2018 · Journal of Alzheimer’s Disease
34. TBR1 regulates autism risk genes in the developing neocortex
    Notwell, James H., Heavner, Whitney E., Darbandi, Siavash Fazel, Katzman, Sol, McKenna, William L., Ortiz-Londono, Christian F., Tastad, David, Eckler, Matthew J., Rubenstein, John L.R., McConnell, Susan K. et al. · 2016 · Genome Research
35. Phosphoproteome and drug-response effects mediated by the three protein phosphatase 2A inhibitor proteins CIP2A, SET, and PME-1
    Kauko, Otto, Imanishi, Susumu Y., Kulesskiy, Evgeny, Yetukuri, Laxman, Laajala, Teemu Daniel, Sharma, Mukund, Pavic, Karolina, Aakula, Anna, Rupp, Christian, Jumppanen, Mikael et al. · 2020 · Journal of Biological Chemistry
36. Modulation of the ATM/autophagy pathway by a G-quadruplex ligand tips the balance between senescence and apoptosis in cancer cells
    Beauvarlet, Jennifer, Bensadoun, Paul, Darbo, Elodie, Labrunie, Gaelle, Rousseau, Benoît, Richard, Elodie, Draskovic, Irena, Londono-Vallejo, Arturo, Dupuy, Jean-William, Nath Das, Rabindra et al. · 2019 · Nucleic Acids Research
37. Th17 cells contribute to combination MEK inhibitor and anti-PD-L1 therapy resistance in KRAS/p53 mutant lung cancers
    Peng, David H., Rodriguez, B. Leticia, Diao, Lixia, Gaudreau, Pierre-Olivier, Padhye, Aparna, Konen, Jessica M., Ochieng, Joshua K., Class, Caleb A., Fradette, Jared J., Gibson, Laura et al. · 2021 · Nature Communications
38. A constitutive interferon-high immunophenotype defines response to immunotherapy in colorectal cancer
    Acha-Sagredo, Amelia, Andrei, Pietro, Clayton, Kalum, Taggart, Emma, Antoniotti, Carlotta, Woodman, Chloé A., Afrache, Hassnae, Fourny, Constance, Armero, Maria, Moinudeen, Hafsa Kaja et al. · 2025 · Cancer Cell
39. Genetic variants of phospholipase C-γ2 alter the phenotype and function of microglia and confer differential risk for Alzheimer’s disease
    Tsai, Andy P., Dong, Chuanpeng, Lin, Peter Bor-Chian, Oblak, Adrian L., Viana Di Prisco, Gonzalo, Wang, Nian, Hajicek, Nicole, Carr, Adam J., Lendy, Emma K., Hahn, Oliver et al. · 2023 · Immunity
40. CD93 is expressed on chronic myeloid leukemia stem cells and identifies a quiescent population which persists after tyrosine kinase inhibitor therapy
    Kinstrie, Ross, Horne, Gillian A., Morrison, Heather, Irvine, David, Munje, Chinmay, Castañeda, Eduardo Gómez, Moka, Hothri A., Dunn, Karen, Cassels, Jennifer E., Parry, Narissa et al. · 2020 · Leukemia
41. Ischemia/reperfusion induces interferon stimulated gene expression in microglia
    McDonough, Ashley, Lee, Richard V., Noor, Shahani, Lee, Chungeun, Le, Thu, Iorga, Michael, Phillips, Jessica L.H., Murphy, Sean, Möller, Thomas, Weinstein, Jonathan R. · 2017 · The Journal of Neuroscience
42. Increased autophagy in EphrinB2-deficient osteocytes is associated with elevated secondary mineralization and brittle bone
    Vrahnas, Christina, Blank, Martha, Dite, Toby A., Tatarczuch, Liliana, Ansari, Niloufar, Crimeen-Irwin, Blessing, Nguyen, Huynh, Forwood, Mark R., Hu, Yifang, Ikegame, Mika et al. · 2019 · Nature Communications
43. No evidence of white adipocyte browning after endurance exercise training in obese men
    Tsiloulis, T, Carey, A L, Bayliss, J, Canny, B, Meex, R C R, Watt, M J · 2018 · International Journal of Obesity
44. Dedifferentiation and neuronal repression define familial Alzheimer’s disease
    Caldwell, Andrew B., Liu, Qing, Schroth, Gary P., Galasko, Douglas R., Yuan, Shauna H., Wagner, Steven L., Subramaniam, Shankar · 2020 · Science Advances
45. A guide to creating design matrices for gene expression experiments
    Law, Charity W., Zeglinski, Kathleen, Dong, Xueyi, Alhamdoosh, Monther, Smyth, Gordon K., Ritchie, Matthew E. · 2020 · F1000Research
46. Large neutral amino acid levels tune perinatal neuronal excitability and survival
    Knaus, Lisa S., Basilico, Bernadette, Malzl, Daniel, Gerykova Bujalkova, Maria, Smogavec, Mateja, Schwarz, Lena A., Gorkiewicz, Sarah, Amberg, Nicole, Pauler, Florian M., Knittl-Frank, Christian et al. · 2023 · Cell
47. In situ cell-type-specific cell-surface proteomic profiling in mice
    Shuster, S. Andrew, Li, Jiefu, Chon, URee, Sinantha-Hu, Miley C., Luginbuhl, David J., Udeshi, Namrata D., Carey, Dominique Kiki, Takeo, Yukari H., Xie, Qijing, Xu, Chuanyun et al. · 2022 · Neuron
48. PU.1 Is Required for the Developmental Progression of Multipotent Progenitors to Common Lymphoid Progenitors
    Pang, Swee Heng Milon, de Graaf, Carolyn A., Hilton, Douglas J., Huntington, Nicholas D., Carotta, Sebastian, Wu, Li, Nutt, Stephen L. · 2018 · Frontiers in Immunology
49. Mechanisms of Response and Tolerance to Active RAS Inhibition in <i>KRAS</i> -Mutant Non–Small Cell Lung Cancer
    Araujo, Haniel A., Pechuan-Jorge, Ximo, Zhou, Teng, Do, Minh Truong, Hu, Xin, Rojas Alvarez, Frank R., Salvatierra, Maria E., Ibarguen, Heladio P., Lee, Richard, Raghulan, Rashi et al. · 2024 · Cancer Discovery
50. The three-dimensional landscape of cortical chromatin accessibility in Alzheimer’s disease
    Bendl, Jaroslav, Hauberg, Mads E., Girdhar, Kiran, Im, Eunju, Vicari, James M., Rahman, Samir, Fernando, Michael B., Townsley, Kayla G., Dong, Pengfei, Misir, Ruth et al. · 2022 · Nature Neuroscience
51. A community challenge for a pancancer drug mechanism of action inference from perturbational profile data
    Douglass, Eugene F., Allaway, Robert J., Szalai, Bence, Wang, Wenyu, Tian, Tingzhong, Fernández-Torras, Adrià, Realubit, Ron, Karan, Charles, Zheng, Shuyu, Pessia, Alberto et al. · 2022 · Cell Reports Medicine
52. Preserved respiratory chain capacity and physiology in mice with profoundly reduced levels of mitochondrial respirasomes
    Milenkovic, Dusanka, Misic, Jelena, Hevler, Johannes F., Molinié, Thibaut, Chung, Injae, Atanassov, Ilian, Li, Xinping, Filograna, Roberta, Mesaros, Andrea, Mourier, Arnaud et al. · 2023 · Cell Metabolism
53. UBR5 forms ligand-dependent complexes on chromatin to regulate nuclear hormone receptor stability
    Tsai, Jonathan M., Aguirre, Jacob D., Li, Yen-Der, Brown, Jared, Focht, Vivian, Kater, Lukas, Kempf, Georg, Sandoval, Brittany, Schmitt, Stefan, Rutter, Justine C. et al. · 2023 · Molecular Cell
54. Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs
    Cates, Kitra, McCoy, Matthew J., Kwon, Ji-Sun, Liu, Yangjian, Abernathy, Daniel G., Zhang, Bo, Liu, Shaopeng, Gontarz, Paul, Kim, Woo Kyung, Chen, Shawei et al. · 2021 · Cell Stem Cell
55. First-in-class MKK4 inhibitors enhance liver regeneration and prevent liver failure
    Zwirner, Stefan, Abu Rmilah, Anan A., Klotz, Sabrina, Pfaffenroth, Bent, Kloevekorn, Philip, Moschopoulou, Athina A., Schuette, Svenja, Haag, Mathias, Selig, Roland, Li, Kewei et al. · 2024 · Cell
56. Musclin, A Myokine Induced by Aerobic Exercise, Retards Muscle Atrophy During Cancer Cachexia in Mice
    Re Cecconi, Andrea D., Forti, Mara, Chiappa, Michela, Zhu, Zhiyong, Zingman, Leonid V., Cervo, Luigi, Beltrame, Luca, Marchini, Sergio, Piccirillo, Rosanna · 2019 · Cancers
57. Species comparison of liver proteomes reveals links to naked mole-rat longevity and human aging
    Heinze, Ivonne, Bens, Martin, Calzia, Enrico, Holtze, Susanne, Dakhovnik, Oleksandr, Sahm, Arne, Kirkpatrick, Joanna M., Szafranski, Karol, Romanov, Natalie, Sama, Sai Nagender et al. · 2018 · BMC Biology
58. Neoantigen-specific immunity in low mutation burden colorectal cancers of the consensus molecular subtype 4
    van den Bulk, Jitske, Verdegaal, Els M. E., Ruano, Dina, Ijsselsteijn, Marieke E., Visser, Marten, van der Breggen, Ruud, Duhen, Thomas, van der Ploeg, Manon, de Vries, Natasja L., Oosting, Jan et al. · 2019 · Genome Medicine
59. PINA 3.0: mining cancer interactome
    Du, Yang, Cai, Meng, Xing, Xiaofang, Ji, Jiafu, Yang, Ence, Wu, Jianmin · 2021 · Nucleic Acids Research
60. Foxp3+ Regulatory T Cells Inhibit CCl4-Induced Liver Inflammation and Fibrosis by Regulating Tissue Cellular Immunity
    Ikeno, Yoshinobu, Ohara, Daiya, Takeuchi, Yusuke, Watanabe, Hitomi, Kondoh, Gen, Taura, Kojiro, Uemoto, Shinji, Hirota, Keiji · 2020 · Frontiers in Immunology
61. Development of PDE6D and CK1α Degraders through Chemical Derivatization of FPFT-2216
    Teng, Mingxing, Lu, Wenchao, Donovan, Katherine A., Sun, Jialin, Krupnick, Noah M., Nowak, Radosław P., Li, Yen-Der, Sperling, Adam S., Zhang, Tinghu, Ebert, Benjamin L. et al. · 2022 · Journal of Medicinal Chemistry
62. Proteotoxic stress response drives T cell exhaustion and immune evasion
    Wang, Yi, Ma, Anjun, Song, No-Joon, Shannon, Ariana E., Amankwah, Yaa S., Chen, Xingyu, Wu, Weidong, Wang, Ziyu, Saadey, Abbey A., Yousif, Amir et al. · 2025 · Nature
63. A clinically applicable gene-expression classifier reveals intrinsic and extrinsic contributions to consensus molecular subtypes in primary and metastatic colon cancer
    Piskol, Robert, Huw, Ling, Sergin, Ismail, Kljin, Christiaan, Modrusan, Zora, Kim, Doris, Kljavin, Noelyn, Tam, Rachel, Patel, Rajesh, Burton, Jeremy et al. · 2019 · Clinical Cancer Research
64. Placental IGFBP1 levels during early pregnancy and the risk of insulin resistance and gestational diabetes
    Hivert, Marie-France, White, Frédérique, Allard, Catherine, James, Kaitlyn, Majid, Sana, Aguet, François, Ardlie, Kristin G., Florez, Jose C., Edlow, Andrea G., Bouchard, Luigi et al. · 2024 · Nature Medicine
65. DNAH10 mutation correlates with cisplatin sensitivity and tumor mutation burden in small-cell lung cancer
    Li, Man, Lin, Anqi, Luo, Peng, Shen, Weitao, Xiao, Dan, Gou, Lanying, Zhang, Jian, Guo, Linlang · 2020 · Aging
66. Selective deletion of MyD88 signaling in α-SMA positive cells ameliorates experimental intestinal fibrosis via post-transcriptional regulation
    Zhao, Shuai, Dejanovic, Dina, Yao, Peng, Bhilocha, Shardul, Sadler, Tammy, Schirbel, Anja, West, Gail, Doyon, Genevieve, Lopez, Rocio, Mao, Ren et al. · 2020 · Mucosal Immunology
67. An integrated multi-omics analysis reveals osteokines involved in global regulation
    Liang, Wenquan, Wei, Tiantian, Hu, Le, Chen, Meijun, Tong, Liping, Zhou, Wu, Duan, Xingwei, Zhao, Xiaoyang, Zhou, Weijie, Jiang, Qing et al. · 2024 · Cell Metabolism
68. Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase
    Schenk, Sven, Bannister, Stephanie C, Sedlazeck, Fritz J, Anrather, Dorothea, Minh, Bui Quang, Bileck, Andrea, Hartl, Markus, von Haeseler, Arndt, Gerner, Christopher, Raible, Florian et al. · 2019 · eLife
69. Identification of TYROBP and C1QB as Two Novel Key Genes With Prognostic Value in Gastric Cancer by Network Analysis
    Jiang, Junjie, Ding, Yongfeng, Wu, Mengjie, Lyu, Xiadong, Wang, Haifeng, Chen, Yanyan, Wang, Haiyong, Teng, Lisong · 2020 · Frontiers in Oncology
70. Primate innate immune responses to bacterial and viral pathogens reveals an evolutionary trade-off between strength and specificity
    Hawash, Mohamed B. F., Sanz-Remón, Joaquin, Grenier, Jean-Christophe, Kohn, Jordan, Yotova, Vania, Johnson, Zach, Lanford, Robert E., Brinkworth, Jessica F., Barreiro, Luis B. · 2021 · Proceedings of the National Academy of Sciences
71. ASGARD is a single-cell guided pipeline to aid repurposing of drugs
    He, Bing, Xiao, Yao, Liang, Haodong, Huang, Qianhui, Du, Yuheng, Li, Yijun, Garmire, David, Sun, Duxin, Garmire, Lana X. · 2023 · Nature Communications
72. Unique Human and Mouse β-Cell Senescence-Associated Secretory Phenotype (SASP) Reveal Conserved Signaling Pathways and Heterogeneous Factors
    Midha, Ayush, Pan, Hui, Abarca, Cristian, Andle, Joshua, Carapeto, Priscila, Bonner-Weir, Susan, Aguayo-Mazzucato, Cristina · 2021 · Diabetes
73. SREBP2 contributes to cisplatin resistance in ovarian cancer cells
    Zheng, Lei, Li, Li, Lu, Yun, Jiang, Fangfang, Yang, Xiu-An · 2018 · Experimental Biology and Medicine
74. Switch of Mitochondrial Superoxide Dismutase into a Prooxidant Peroxidase in Manganese-Deficient Cells and Mice
    Ganini, Douglas, Santos, Janine H., Bonini, Marcelo G., Mason, Ronald P. · 2018 · Cell Chemical Biology
75. UM171 glues asymmetric CRL3–HDAC1/2 assembly to degrade CoREST corepressors
    Yeo, Megan J. R., Zhang, Olivia, Xie, Xiaowen, Nam, Eunju, Payne, N. Connor, Gosavi, Pallavi M., Kwok, Hui Si, Iram, Irtiza, Lee, Ceejay, Li, Jiaming et al. · 2025 · Nature
76. The 22q11.2 region regulates presynaptic gene-products linked to schizophrenia
    Nehme, Ralda, Pietiläinen, Olli, Artomov, Mykyta, Tegtmeyer, Matthew, Valakh, Vera, Lehtonen, Leevi, Bell, Christina, Singh, Tarjinder, Trehan, Aditi, Sherwood, John et al. · 2022 · Nature Communications
77. Safeguard function of PU.1 shapes the inflammatory epigenome of neutrophils
    Fischer, Josephine, Walter, Carolin, Tönges, Alexander, Aleth, Hanna, Jordão, Marta Joana Costa, Leddin, Mathias, Gröning, Verena, Erdmann, Tabea, Lenz, Georg, Roth, Johannes et al. · 2019 · Nature Immunology
78. Chronic interleukin-1 exposure triggers selection for <i>Cebpa</i> -knockout multipotent hematopoietic progenitors
    Higa, Kelly C., Goodspeed, Andrew, Chavez, James S., De Dominici, Marco, Danis, Etienne, Zaberezhnyy, Vadym, Rabe, Jennifer L., Tenen, Daniel G., Pietras, Eric M., DeGregori, James · 2021 · Journal of Experimental Medicine
79. Disrupting pro-survival and inflammatory pathways with dimethyl fumarate sensitizes chronic lymphocytic leukemia to cell death
    Mantione, Maria Elena, Meloni, Miriam, Sana, Ilenia, Bordini, Jessica, Del Nero, Martina, Riba, Michela, Ranghetti, Pamela, Perotta, Eleonora, Ghia, Paolo, Scarfò, Lydia et al. · 2024 · Cell Death &amp; Disease
80. Nicotinamide phosphoribosyltransferase prompts bleomycin-induced pulmonary fibrosis by driving macrophage M2 polarization in mice
    Chen, Yaling, Wang, Tong, Liang, Fuxiang, Han, Jia, Lou, Zhiling, Yu, Yifan, Li, Jinsheng, Zhan, Tianwei, Gu, Yuqing, Dong, Lingjun et al. · 2024 · Theranostics
81. Aducanumab anti-amyloid immunotherapy induces sustained microglial and immune alterations
    Cadiz, Mika P., Gibson, Katelin A., Todd, Kennedi T., Nascari, David G., Massa, Nashali, Lilley, Meredith T., Olney, Kimberly C., Al-Amin, Md Mamun, Jiang, Hong, Holtzman, David M. et al. · 2024 · Journal of Experimental Medicine
82. CXCR3 Identifies Human Naive CD8+ T Cells with Enhanced Effector Differentiation Potential
    De Simone, Gabriele, Mazza, Emilia M C, Cassotta, Antonino, Davydov, Alexey N, Kuka, Mirela, Zanon, Veronica, De Paoli, Federica, Scamardella, Eloise, Metsger, Maria, Roberto, Alessandra et al. · 2019 · The Journal of Immunology
83. Autophagy accounts for approximately one-third of mitochondrial protein turnover and is protein selective
    Vincow, Evelyn S., Thomas, Ruth E., Merrihew, Gennifer E., Shulman, Nicholas J., Bammler, Theo K., MacDonald, James W., MacCoss, Michael J., Pallanck, Leo J. · 2019 · Autophagy
84. CPT1A Over-Expression Increases Reactive Oxygen Species in the Mitochondria and Promotes Antioxidant Defenses in Prostate Cancer
    Joshi, Molishree, Kim, Jihye, D’Alessandro, Angelo, Monk, Emily, Bruce, Kimberley, Elajaili, Hanan, Nozik-Grayck, Eva, Goodspeed, Andrew, Costello, James C., Schlaepfer, Isabel R. · 2020 · Cancers
85. SIRT1 regulates trophoblast senescence in premature placental aging in preeclampsia
    Wang, YuJia, Zhang, Yingye, Wu, Yongqi, He, Yunbiao, Xiang, Jingwen, Huang, Jieqiong, Lash, Gendie E., Li, Ping · 2022 · Placenta
86. A computational method for detection of ligand-binding proteins from dose range thermal proteome profiles
    Kurzawa, Nils, Becher, Isabelle, Sridharan, Sindhuja, Franken, Holger, Mateus, André, Anders, Simon, Bantscheff, Marcus, Huber, Wolfgang, Savitski, Mikhail M. · 2020 · Nature Communications
87. Nonalcoholic Steatohepatitis and HCC in a Hyperphagic Mouse Accelerated by Western Diet
    Ganguly, Souradipta, Muench, German Aleman, Shang, Linshan, Rosenthal, Sara Brin, Rahman, Gibraan, Wang, Ruoyu, Wang, Yanhan, Kwon, Hyeok Choon, Diomino, Anthony M., Kisseleva, Tatiana et al. · 2021 · Cellular and Molecular Gastroenterology and Hepatology
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