The DOI matches its Crossref record; 269 of the 269 references it cites were found in a registry or an index.
The maternal-to-zygotic transition revisited
Abstract
The development of animal embryos is initially directed by maternal gene products. Then, during the maternal-to-zygotic transition (MZT), developmental control is handed to the zygotic genome. Extensive research in both vertebrate and invertebrate model organisms has revealed that the MZT can be subdivided into two phases, during which very different modes of gene regulation are implemented: initially, regulation is exclusively post-transcriptional and post-translational, following which gradual activation of the zygotic genome leads to predominance of transcriptional regulation. These changes in the gene expression program of embryos are precisely controlled and highly interconnected. Here, we review current understanding of the mechanisms that underlie handover of developmental control during the MZT.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Regulation of microRNA function in animals
Gebert, L. F. R., & MacRae, I. J. (2019) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-018-0045-7 · Cited by 2,284
Direct multiplexed measurement of gene expression with color-coded probe pairs
Geiss, G. K., Bumgarner, R. E., Birditt, B., Dahl, T., Dowidar, N., Dunaway, D. L., Fell, H. P., Ferree, S., George, R. D., Grogan, T., et al. (2008) · Nature Biotechnology · doi:10.1038/nbt1385 · Cited by 2,066
N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions
Liu, N., Dai, Q., Zheng, G., He, C., Parisien, M., & Pan, T. (2015) · Nature · doi:10.1038/nature14234 · Cited by 1,988
Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
Yan, L., Yang, M., Guo, H., Yang, L., Wu, J., Li, R., Liu, P., Lian, Y., Zheng, X., Yan, J., et al. (2013) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2660 · Cited by 1,740
Zebrafish MiR-430 Promotes Deadenylation and Clearance of Maternal mRNAs
Giraldez, A. J., Mishima, Y., Rihel, J., Grocock, R. J., Van Dongen, S., Inoue, K., Enright, A. J., & Schier, A. F. (2006) · Science · doi:10.1126/science.1122689 · Cited by 1,647
Dynamic Reprogramming of DNA Methylation in the Early Mouse Embryo
Santos, F., Hendrich, B., Reik, W., & Dean, W. (2002) · Developmental Biology · doi:10.1006/dbio.2001.0501 · Cited by 1,212
The maternal-to-zygotic transition: a play in two acts
Tadros, W., & Lipshitz, H. D. (2009) · Development · doi:10.1242/dev.033183 · Cited by 1,187
Self-citationALTERATION OF NUCLEOSOME STRUCTURE AS A MECHANISM OF TRANSCRIPTIONAL REGULATION
Workman, J. L., & Kingston, R. E. (1998) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.67.1.545 · Cited by 1,129
Codon Optimality Is a Major Determinant of mRNA Stability
Presnyak, V., Alhusaini, N., Chen, Y.-H., Martin, S., Morris, N., Kline, N., Olson, S., Weinberg, D., Baker, K. E., Graveley, B. R., et al. (2015) · Cell · doi:10.1016/j.cell.2015.02.029 · Cited by 1,078 · cited 1×
“slow-moving ribosomes and directing these transcripts for degradation (Presnyak et al., 2015; Radhakrishnan et al., 2016).”
BackgroundA major developmental transition in early xenopus embryos: II. control of the onset of transcription
Newport, J., & Kirschner, M. (1982) · Cell · doi:10.1016/0092-8674(82)90273-2 · Cited by 1,055
Lécuyer, E., Yoshida, H., Parthasarathy, N., Alm, C., Babak, T., Cerovina, T., Hughes, T. R., Tomancak, P., & Krause, H. M. (2007) · Cell · doi:10.1016/j.cell.2007.08.003 · Cited by 967
The DNA methylation landscape of human early embryos
Guo, H., Zhu, P., Yan, L., Li, R., Hu, B., Lian, Y., Yan, J., Ren, X., Lin, S., Li, J., et al. (2014) · Nature · doi:10.1038/nature13544 · Cited by 913
Dynamics of Global Gene Expression Changes during Mouse Preimplantation Development
Hamatani, T., Carter, M. G., Sharov, A. A., & Ko, M. S. H. (2004) · Developmental Cell · doi:10.1016/s1534-5807(03)00373-3 · Cited by 878
Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
Farrell, J. A., Wang, Y., Riesenfeld, S. J., Shekhar, K., Regev, A., & Schier, A. F. (2018) · Science · doi:10.1126/science.aar3131 · Cited by 876
Histones: annotating chromatin
Campos, E. I., & Reinberg, D. (2009) · Annual Review of Genetics · doi:10.1146/annurev.genet.032608.103928 · Cited by 852
Codon optimality, bias and usage in translation and mRNA decay
Hanson, G., & Coller, J. (2018) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm.2017.91 · Cited by 825 · cited 1×
“Codon optimality In unicellular organisms, ‘optimal’ codons are defined as those with high cognate tRNA abundance, whereas non-optimal codons for the same amino acid have low cognate tRNA levels (Hanson and Coller, 2018).”
BackgroundSystematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
Pauli, A., Valen, E., Lin, M. F., Garber, M., Vastenhouw, N. L., Levin, J. Z., Fan, L., Sandelin, A., Rinn, J. L., Regev, A., et al. (2012) · Genome Research · doi:10.1101/gr.133009.111 · Cited by 786
Self-citationDistinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos
Liu, X., Wang, C., Liu, W., Li, J., Li, C., Kou, X., Chen, J., Zhao, Y., Gao, H., Wang, H., et al. (2016) · Nature · doi:10.1038/nature19362 · Cited by 746
Hendrickson, P. G., Doráis, J. A., Grow, E. J., Whiddon, J. L., Lim, J.-W., Wike, C. L., Weaver, B. D., Pflueger, C., Emery, B. R., Wilcox, A. L., et al. (2017) · Nature Genetics · doi:10.1038/ng.3844 · Cited by 734
RNA-Binding Protein Dnd1 Inhibits MicroRNA Access to Target mRNA
Kedde, M., Strasser, M. J., Boldajipour, B., Vrielink, J. A. F. O., Slanchev, K., le Sage, C., Nagel, R., Voorhoeve, P. M., van Duijse, J., Ørom, U. A., et al. (2007) · Cell · doi:10.1016/j.cell.2007.11.034 · Cited by 732
Ribosome Profiling Shows That miR-430 Reduces Translation Before Causing mRNA Decay in Zebrafish
Bazzini, A. A., Lee, M. T., & Giraldez, A. J. (2012) · Science · doi:10.1126/science.1215704 · Cited by 709 · cited 1×
“Estimates range from about one-quarter of the maternal transcripts in zebrafish (Aanes et al., 2011; Bazzini et al., 2012; Harvey et al., 2013; Mishima and Tomari, 2016), one-third in C.”
BackgroundThe landscape of accessible chromatin in mammalian preimplantation embryos
Wu, J., Huang, B., Chen, H., Yin, Q., Liu, Y., Xiang, Y., Zhang, B., Liu, B., Wang, Q., Xia, W., et al. (2016) · Nature · doi:10.1038/nature18606 · Cited by 706
Allelic reprogramming of the histone modification H3K4me3 in early mammalian development
Zhang, B., Zheng, H., Huang, B., Li, W., Xiang, Y., Peng, X., Ming, J., Wu, X., Zhang, Y., Xu, Q., et al. (2016) · Nature · doi:10.1038/nature19361 · Cited by 691
Poly(A)-tail profiling reveals an embryonic switch in translational control
Subtelny, A. O., Eichhorn, S. W., Chen, G. R., Sive, H., & Bartel, D. P. (2014) · Nature · doi:10.1038/nature13007 · Cited by 664
Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition
Dahl, J. A., Jung, I., Aanes, H., Greggains, G. D., Manaf, A., Lerdrup, M., Li, G., Kuan, S., Li, B., Lee, A. Y., et al. (2016) · Nature · doi:10.1038/nature19360 · Cited by 638
Aoki, F., Worrad, D. M., & Schultz, R. M. (1997) · Developmental Biology · doi:10.1006/dbio.1996.8466 · Cited by 612
Autophagy Is Essential for Preimplantation Development of Mouse Embryos
Tsukamoto, S., Kuma, A., Murakami, M., Kishi, C., Yamamoto, A., & Mizushima, N. (2008) · Science · doi:10.1126/science.1154822 · Cited by 612
DUX-family transcription factors regulate zygotic genome activation in placental mammals
De Iaco, A., Planet, E., Coluccio, A., Verp, S., Duc, J., & Trono, D. (2017) · Nature Genetics · doi:10.1038/ng.3858 · Cited by 606
Lorch, Y., LaPointe, J. W., & Kornberg, R. D. (1987) · Cell · doi:10.1016/0092-8674(87)90561-7 · Cited by 605
Maternal microRNAs are essential for mouse zygotic development
Tang, F., Kaneda, M., O’Carroll, D., Hajkova, P., Barton, S. C., Sun, Y. A., Lee, C., Tarakhovsky, A., Lao, K., & Surani, M. A. (2007) · Genes & Development · doi:10.1101/gad.418707 · Cited by 570
piRNA-Guided Genome Defense: From Biogenesis to Silencing
Czech, B., Munafò, M., Ciabrelli, F., Eastwood, E. L., Fabry, M. H., Kneuss, E., & Hannon, G. J. (2018) · Annual Review of Genetics · doi:10.1146/annurev-genet-120417-031441 · Cited by 570
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution
Briggs, J. A., Weinreb, C., Wagner, D. E., Megason, S., Peshkin, L., Kirschner, M. W., & Klein, A. M. (2018) · Science · doi:10.1126/science.aar5780 · Cited by 565
m6A-dependent maternal mRNA clearance facilitates zebrafish maternal-to-zygotic transition
Zhao, B. S., Wang, X., Beadell, A. V., Lu, Z., Shi, H., Kuuspalu, A., Ho, R. K., & He, C. (2017) · Nature · doi:10.1038/nature21355 · Cited by 564
Mechanisms regulating zygotic genome activation
Schulz, K. N., & Harrison, M. M. (2019) · Nature Reviews Genetics · doi:10.1038/s41576-018-0087-x · Cited by 555
Allelic reprogramming of 3D chromatin architecture during early mammalian development
Du, Z., Zheng, H., Huang, B., Ma, R., Wu, J., Zhang, X., He, J., Xiang, Y., Wang, Q., Li, Y., et al. (2017) · Nature · doi:10.1038/nature23263 · Cited by 527
Ke, Y., Xu, Y., Chen, X., Feng, S., Liu, Z., Sun, Y., Yao, X., Li, F., Zhu, W., Gao, L., et al. (2017) · Cell · doi:10.1016/j.cell.2017.06.029 · Cited by 522
Wang, Q. T., Piotrowska, K., Ciemerych, M. A., Milenkovic, L., Scott, M. P., Davis, R. W., & Zernicka-Goetz, M. (2004) · Developmental Cell · doi:10.1016/s1534-5807(03)00404-0 · Cited by 504
Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition
Lee, M. T., Bonneau, A. R., Takacs, C. M., Bazzini, A. A., DiVito, K. R., Fleming, E. S., & Giraldez, A. J. (2013) · Nature · doi:10.1038/nature12632 · Cited by 503
Sperm, but Not Oocyte, DNA Methylome Is Inherited by Zebrafish Early Embryos
Jiang, L., Zhang, J., Wang, J.-J., Wang, L., Zhang, L., Li, G., Yang, X., Ma, X., Sun, X., Cai, J., et al. (2013) · Cell · doi:10.1016/j.cell.2013.04.041 · Cited by 491
The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila
Liang, H.-L., Nien, C.-Y., Liu, H.-Y., Metzstein, M. M., Kirov, N., & Rushlow, C. (2008) · Nature · doi:10.1038/nature07388 · Cited by 478
Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription
Hug, C. B., Grimaldi, A. G., Kruse, K., & Vaquerizas, J. M. (2017) · Cell · doi:10.1016/j.cell.2017.03.024 · Cited by 466
A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
Domazet-Lošo, T., & Tautz, D. (2010) · Nature · doi:10.1038/nature09632 · Cited by 458
Hake, L. E., & Richter, J. D. (1994) · Cell · doi:10.1016/0092-8674(94)90547-9 · Cited by 454
Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo
Rouget, C., Papin, C., Boureux, A., Meunier, A.-C., Franco, B., Robine, N., Lai, E. C., Pelisson, A., & Simonelig, M. (2010) · Nature · doi:10.1038/nature09465 · Cited by 438
MicroRNA Function Is Globally Suppressed in Mouse Oocytes and Early Embryos
Suh, N., Baehner, L., Moltzahn, F., Melton, C., Shenoy, A., Chen, J., & Blelloch, R. (2010) · Current Biology · doi:10.1016/j.cub.2009.12.044 · Cited by 435
Adenot, P. G., Mercier, Y., Renard, J.-P., & Thompson, E. M. (1997) · Development · doi:10.1242/dev.124.22.4615 · Cited by 427
Gene expression divergence recapitulates the developmental hourglass model
Kalinka, A. T., Varga, K. M., Gerrard, D. T., Preibisch, S., Corcoran, D. L., Jarrells, J., Ohler, U., Bergman, C. M., & Tomancak, P. (2010) · Nature · doi:10.1038/nature09634 · Cited by 426
Potok, M. E., Nix, D. A., Parnell, T. J., & Cairns, B. R. (2013) · Cell · doi:10.1016/j.cell.2013.04.030 · Cited by 395
Ivanova, I., Much, C., Di Giacomo, M., Azzi, C., Morgan, M., Moreira, P. N., Monahan, J., Carrieri, C., Enright, A. J., & O’Carroll, D. (2017) · Molecular Cell · doi:10.1016/j.molcel.2017.08.003 · Cited by 392
Maskin Is a CPEB-Associated Factor that Transiently Interacts with eIF-4E
Stebbins-Boaz, B., Cao, Q., de Moor, C. H., Mendez, R., & Richter, J. D. (1999) · Molecular Cell · doi:10.1016/s1097-2765(00)80230-0 · Cited by 382
Chromatin signature of embryonic pluripotency is established during genome activation
Vastenhouw, N. L., Zhang, Y., Woods, I. G., Imam, F., Regev, A., Liu, X. S., Rinn, J., & Schier, A. F. (2010) · Nature · doi:10.1038/nature08866 · Cited by 373
Self-citationParameters controlling transcriptional activation during early drosophila development
Edgar, B. (1986) · Cell · doi:10.1016/0092-8674(86)90009-7 · Cited by 371
A high-resolution mRNA expression time course of embryonic development in zebrafish
White, R. J., Collins, J. E., Sealy, I. M., Wali, N., Dooley, C. M., Digby, Z., Stemple, D. L., Murphy, D. N., Billis, K., Hourlier, T., et al. (2017) · eLife · doi:10.7554/elife.30860 · Cited by 361
Progression of the cell cycle through mitosis leads to abortion of nascent transcripts
Shermoen, A. W., & O'Farrell, P. H. (1991) · Cell · doi:10.1016/0092-8674(91)90182-x · Cited by 360
Soma-germline asymmetry in the distributions of embryonic RNAs in Caenorhabditis elegans
Seydoux, G., & Fire, A. (1994) · Development · doi:10.1242/dev.120.10.2823 · Cited by 345
Establishing Chromatin Regulatory Landscape during Mouse Preimplantation Development
Lu, F., Liu, Y., Inoue, A., Suzuki, T., Zhao, K., & Zhang, Y. (2016) · Cell · doi:10.1016/j.cell.2016.05.050 · Cited by 340
Chromatin analysis in human early development reveals epigenetic transition during ZGA
Wu, J., Xu, J., Liu, B., Yao, G., Wang, P., Lin, Z., Huang, B., Wang, X., Li, T., Shi, S., et al. (2018) · Nature · doi:10.1038/s41586-018-0080-8 · Cited by 339
Harrison, M. M., Li, X.-Y., Kaplan, T., Botchan, M. R., & Eisen, M. B. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002266 · Cited by 338
Maternal BRG1 regulates zygotic genome activation in the mouse
Bultman, S. J., Gebuhr, T. C., Pan, H., Svoboda, P., Schultz, R. M., & Magnuson, T. (2006) · Genes & Development · doi:10.1101/gad.1435106 · Cited by 335
Tadros, W., Goldman, A. L., Babak, T., Menzies, F., Vardy, L., Orr-Weaver, T., Hughes, T. R., Westwood, J. T., Smibert, C. A., & Lipshitz, H. D. (2007) · Developmental Cell · doi:10.1016/j.devcel.2006.10.005 · Cited by 330
Self-citationTranscriptome Analysis of Zebrafish Embryogenesis Using Microarrays
Mathavan, S., Lee, S. G. P., Mak, A., Miller, L. D., Murthy, K. R. K., Govindarajan, K. R., Tong, Y., Wu, Y. L., Lam, S. H., Yang, H., et al. (2005) · PLoS Genetics · doi:10.1371/journal.pgen.0010029 · Cited by 330
Regulation of APC/C Activators in Mitosis and Meiosis
Pesin, J. A., & Orr-Weaver, T. L. (2008) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.041408.115949 · Cited by 321
Differential Regulation of Germline mRNAs in Soma and Germ Cells by Zebrafish miR-430
Mishima, Y., Giraldez, A. J., Takeda, Y., Fujiwara, T., Sakamoto, H., Schier, A. F., & Inoue, K. (2006) · Current Biology · doi:10.1016/j.cub.2006.08.086 · Cited by 321
Genome-wide RNA Tomography in the Zebrafish Embryo
Junker, J. P., Noël, E. S., Guryev, V., Peterson, K. A., Shah, G., Huisken, J., McMahon, A. P., Berezikov, E., Bakkers, J., & van Oudenaarden, A. (2014) · Cell · doi:10.1016/j.cell.2014.09.038 · Cited by 312
Repression of gene expression in the embryonic germ lineage of C. elegans
Seydoux, G., Mello, C. C., Pettitt, J., Wood, W. B., Priess, J. R., & Fire, A. (1996) · Nature · doi:10.1038/382713a0 · Cited by 311
The events of the midblastula transition in Xenopus are regulated by changes in the cell cycle
Kimelman, D., Kirschner, M., & Scherson, T. (1987) · Cell · doi:10.1016/0092-8674(87)90191-7 · Cited by 309
Bazzini, A. A., del Viso, F., Moreno‐Mateos, M. A., Johnstone, T. G., Vejnar, C. E., Qin, Y., Yao, J., Khokha, M. K., & Giraldez, A. J. (2016) · The EMBO Journal · doi:10.15252/embj.201694699 · Cited by 305
Opposing Polymerase-Deadenylase Activities Regulate Cytoplasmic Polyadenylation
Kim, J. H., & Richter, J. D. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.08.016 · Cited by 300
Codon Usage and 3′ UTR Length Determine Maternal mRNA Stability in Zebrafish
Mishima, Y., & Tomari, Y. (2016) · Molecular Cell · doi:10.1016/j.molcel.2016.02.027 · Cited by 293
The DEAD-Box Protein Dhh1p Couples mRNA Decay and Translation by Monitoring Codon Optimality
Radhakrishnan, A., Chen, Y.-H., Martin, S., Alhusaini, N., Green, R., & Coller, J. (2016) · Cell · doi:10.1016/j.cell.2016.08.053 · Cited by 289
Aanes, H., Winata, C. L., Lin, C. H., Chen, J. P., Srinivasan, K. G., Lee, S. G. P., Lim, A. Y. M., Hajan, H. S., Collas, P., Bourque, G., et al. (2011) · Genome Research · doi:10.1101/gr.116012.110 · Cited by 285
Precise Developmental Gene Expression Arises from Globally Stochastic Transcriptional Activity
Little, S. C., Tikhonov, M., & Gregor, T. (2013) · Cell · doi:10.1016/j.cell.2013.07.025 · Cited by 278
Gerber, A. P., Luschnig, S., Krasnow, M. A., Brown, P. O., & Herschlag, D. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0509260103 · Cited by 276
Bushati, N., Stark, A., Brennecke, J., & Cohen, S. M. (2008) · Current Biology · doi:10.1016/j.cub.2008.02.081 · Cited by 268
Unmasking Activation of the Zygotic Genome Using Chromosomal Deletions in the Drosophila Embryo
De Renzis, S., Elemento, O., Tavazoie, S., & Wieschaus, E. F. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050117 · Cited by 265
Semotok, J. L., Cooperstock, R. L., Pinder, B. D., Vari, H. K., Lipshitz, H. D., & Smibert, C. A. (2005) · Current Biology · doi:10.1016/j.cub.2005.01.048 · Cited by 265
Self-citationBTG4 is a meiotic cell cycle–coupled maternal-zygotic-transition licensing factor in oocytes
Yu, C., Ji, S.-Y., Sha, Q.-Q., Dang, Y., Zhou, J.-J., Zhang, Y.-L., Liu, Y., Wang, Z.-W., Hu, B., Sun, Q.-Y., et al. (2016) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.3204 · Cited by 265
Shen, L., Inoue, A., He, J., Liu, Y., Lu, F., & Zhang, Y. (2014) · Cell Stem Cell · doi:10.1016/j.stem.2014.09.002 · Cited by 264
Global Chromatin Architecture Reflects Pluripotency and Lineage Commitment in the Early Mouse Embryo
Ahmed, K., Dehghani, H., Rugg-Gunn, P., Fussner, E., Rossant, J., & Bazett-Jones, D. P. (2010) · PLoS ONE · doi:10.1371/journal.pone.0010531 · Cited by 264
Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome
Baugh, L. R., Hill, A. A., Slonim, D. K., Brown, E. L., & Hunter, C. P. (2003) · Development · doi:10.1242/dev.00302 · Cited by 262
Chen, J., Melton, C. A., Suh, N., Oh, J. S., Horner, K., Xie, F., Sette, C., Blelloch, R. H., & Conti, M. (2011) · Genes & Development · doi:10.1101/gad.2028911 · Cited by 259
Drosophila Cup is an eIF4E‐binding protein that functions in Smaug‐mediated translational repression
Nelson, M. R., Leidal, A. M., & Smibert, C. A. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600026 · Cited by 259
Synchronous and Stochastic Patterns of Gene Activation in the Drosophila Embryo
Boettiger, A. N., & Levine, M. (2009) · Science · doi:10.1126/science.1173976 · Cited by 257
Hadzhiev, Y., Qureshi, H. K., Wheatley, L., Cooper, L., Jasiulewicz, A., Van Nguyen, H., Wragg, J. W., Poovathumkadavil, D., Conic, S., Bajan, S., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-08487-5 · Cited by 256
MEX-5 and MEX-6 Function to Establish Soma/Germline Asymmetry in Early C. elegans Embryos
Schubert, C. M., Lin, R., de Vries, C. J., Plasterk, R. H. A., & Priess, J. R. (2000) · Molecular Cell · doi:10.1016/s1097-2765(00)80246-4 · Cited by 251
The unique transcriptome through day 3 of human preimplantation development
Dobson, A. T., Raja, R. G., Abeyta, M. J., Taylor, T. B., Shen, S., Haqq, C. M., & Pera, R. A. R. (2004) · Human Molecular Genetics · doi:10.1093/hmg/ddh157 · Cited by 250
Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development
Ogiyama, Y., Schuettengruber, B., Papadopoulos, G. L., Chang, J., & Cavalli, G. (2018) · Molecular Cell · doi:10.1016/j.molcel.2018.05.032 · Cited by 249
A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos
Akkers, R. C., van Heeringen, S. J., Jacobi, U. G., Janssen-Megens, E. M., Françoijs, K.-J., Stunnenberg, H. G., & Veenstra, G. J. C. (2009) · Developmental Cell · doi:10.1016/j.devcel.2009.08.005 · Cited by 245
Temporal Coordination of Gene Networks by Zelda in the Early Drosophila Embryo
Nien, C.-Y., Liang, H.-L., Butcher, S., Sun, Y., Fu, S., Gocha, T., Kirov, N., Manak, J. R., & Rushlow, C. A. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002339 · Cited by 245
Smaug, a Novel RNA-Binding Protein that Operates a Translational Switch in Drosophila
Dahanukar, A., Walker, J. A., & Wharton, R. P. (1999) · Molecular Cell · doi:10.1016/s1097-2765(00)80368-8 · Cited by 234
Pou5f1 Transcription Factor Controls Zygotic Gene Activation In Vertebrates
Leichsenring, M., Maes, J., Mössner, R., Driever, W., & Onichtchouk, D. (2013) · Science · doi:10.1126/science.1242527 · Cited by 231
The Earliest Transcribed Zygotic Genes Are Short, Newly Evolved, and Different across Species
Heyn, P. C., Kircher, M., Dahl, A., Kelso, J. F., Tomančák, P., Kalinka, A. T., & Neugebauer, K. M. (2014) · Cell Reports · doi:10.1016/j.celrep.2013.12.030 · Cited by 231
Sallés, F. J., Lieberfarb, M. E., Wreden, C. C., Gergen, J. P., & Strickland, S. (1994) · Science · doi:10.1126/science.7801127 · Cited by 230
Bashirullah, A., Halsell, S. R., Cooperstock, R. L., Kloc, M., Karaiskakis, A., Fisher, W. W., Fu, W., Hamilton, J. K., Etkin, L. D., & Lipshitz, H. D. (1999) · The EMBO Journal · doi:10.1093/emboj/18.9.2610 · Cited by 223
Self-citationEstablishment of regions of genomic activity during the Drosophila maternal to zygotic transition
Li, X., Harrison, M. M., Villalta, J. E., Kaplan, T., & Eisen, M. B. (2014) · eLife · doi:10.7554/elife.03737 · Cited by 220
Titration of Four Replication Factors Is Essential for the Xenopus laevis Midblastula Transition
Collart, C., Allen, G. E., Bradshaw, C. R., Smith, J. C., & Zegerman, P. (2013) · Science · doi:10.1126/science.1241530 · Cited by 220
Germ line–inherited H3K27me3 restricts enhancer function during maternal-to-zygotic transition
Zenk, F., Loeser, E., Schiavo, R., Kilpert, F., Bogdanović, O., & Iovino, N. (2017) · Science · doi:10.1126/science.aam5339 · Cited by 220
Cao, Q. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf353 · Cited by 219
Prepatterning of Developmental Gene Expression by Modified Histones before Zygotic Genome Activation
Lindeman, L. C., Andersen, I. S., Reiner, A. H., Li, N., Aanes, H., Østrup, O., Winata, C. L., Mathavan, S., Müller, F., Aleström, P., et al. (2011) · Developmental Cell · doi:10.1016/j.devcel.2011.10.008 · Cited by 217
Drosophila Pgc protein inhibits P-TEFb recruitment to chromatin in primordial germ cells
Hanyu-Nakamura, K., Sonobe-Nojima, H., Tanigawa, A., Lasko, P., & Nakamura, A. (2008) · Nature · doi:10.1038/nature06498 · Cited by 216
The RNA-binding SAM domain of Smaug defines a new family of post-transcriptional regulators
Aviv, T., Lin, Z., Lau, S., Rendl, L. M., Sicheri, F., & Smibert, C. A. (2003) · Nature Structural & Molecular Biology · doi:10.1038/nsb956 · Cited by 216
Single-cell multi-omics sequencing of human early embryos
Li, L., Guo, F., Gao, Y., Ren, Y., Yuan, P., Yan, L., Li, R., Lian, Y., Li, J., Hu, B., et al. (2018) · Nature Cell Biology · doi:10.1038/s41556-018-0123-2 · Cited by 216
β-Catenin/Tcf-regulated transcription prior to the midblastula transition
Yang, J., Tan, C., Darken, R. S., Wilson, P. A., & Klein, P. S. (2002) · Development · doi:10.1242/dev.00150 · Cited by 213
Lott, S. E., Villalta, J. E., Schroth, G. P., Luo, S. J., Tonkin, L. A., & Eisen, M. B. (2011) · PLoS Biology · doi:10.1371/journal.pbio.1000590 · Cited by 211
Chromatin Accessibility Landscape in Human Early Embryos and Its Association with Evolution
Gao, L., Wu, K., Liu, Z., Yao, X., Yuan, S., Tao, W., Yi, L., Yu, G., Hou, Z., Fan, D., et al. (2018) · Cell · doi:10.1016/j.cell.2018.02.028 · Cited by 210
Zygotic Genome Activation Triggers the DNA Replication Checkpoint at the Midblastula Transition
Blythe, S. A., & Wieschaus, E. F. (2015) · Cell · doi:10.1016/j.cell.2015.01.050 · Cited by 204
Yanai, I., Peshkin, L., Jorgensen, P., & Kirschner, M. W. (2011) · Developmental Cell · doi:10.1016/j.devcel.2011.03.015 · Cited by 204
Identification of the zebrafish maternal and paternal transcriptomes
Harvey, S. A., Sealy, I., Kettleborough, R., Fenyes, F., White, R., Stemple, D., & Smith, J. C. (2013) · Development · doi:10.1242/dev.095091 · Cited by 204
Spatial and temporal control of RNA stability
Bashirullah, A., Cooperstock, R. L., & Lipshitz, H. D. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.111145698 · Cited by 202
Self-citationPaused Pol II Coordinates Tissue Morphogenesis in the Drosophila Embryo
Lagha, M., Bothma, J. P., Esposito, E., Ng, S., Stefanik, L. M., Tsui, C., Johnston, J. J., Chen, K., Gilmour, D. S., Zeitlinger, J., et al. (2013) · Cell · doi:10.1016/j.cell.2013.04.045 · Cited by 201
Translational Control of the Embryonic Cell Cycle
Groisman, I., Jung, M.-Y., Sarkissian, M., Cao, Q., & Richter, J. D. (2002) · Cell · doi:10.1016/s0092-8674(02)00733-x · Cited by 201
Dppa2 and Dppa4 directly regulate the Dux-driven zygotic transcriptional programPreprint
Eckersley-Maslin, M. A., Alda-Catalinas, C., Blotenburg, M., Kreibich, E., Krueger, C., & Reik, W. (2019) · Genes & Development · doi:10.1101/gad.321174.118 · Cited by 200
A role for transcription and FRGY2 in masking maternal mRNA within Xenopus oocytes
Bouvet, P. (1994) · Cell · doi:10.1016/0092-8674(94)90141-4 · Cited by 191
Owens, N. D. L., Blitz, I. L., Lane, M. A., Patrushev, I., Overton, J. D., Gilchrist, M. J., Cho, K. W. Y., & Khokha, M. K. (2016) · Cell Reports · doi:10.1016/j.celrep.2015.12.050 · Cited by 191
Histone synthesis in early amphibian development: Histone and DNA syntheses are not co-ordinated
Adamson, E. D., & Woodland, H. R. (1974) · Journal of Molecular Biology · doi:10.1016/0022-2836(74)90481-1 · Cited by 187
Phonon-tunnelling dissipation in mechanical resonators
Cole, G. D., Wilson-Rae, I., Werbach, K., Vanner, M. R., & Aspelmeyer, M. (2011) · Nature Communications · doi:10.1038/ncomms1212 · Cited by 183
CUG-BP binds to RNA substrates and recruits PARN deadenylase
Moraes, K. C. M., Wilusz, C. J., & Wilusz, J. (2006) · RNA · doi:10.1261/rna.59606 · Cited by 181
Two independent transcription initiation codes overlap on vertebrate core promoters
Haberle, V., Li, N., Hadzhiev, Y., Plessy, C., Previti, C., Nepal, C., Gehrig, J., Dong, X., Akalin, A., Suzuki, A. M., et al. (2014) · Nature · doi:10.1038/nature12974 · Cited by 180
Paillard, L., Omilli, F., Legagneux, V., Bassez, T., Maniey, D., & Osborne, H. B. (1998) · The EMBO Journal · doi:10.1093/emboj/17.1.278 · Cited by 178
Schulz, K. N., Bondra, E. R., Moshe, A., Villalta, J. E., Lieb, J. D., Kaplan, T., McKay, D. J., & Harrison, M. M. (2015) · Genome Research · doi:10.1101/gr.192682.115 · Cited by 177
Sun, Y., Nien, C.-Y., Chen, K., Liu, H.-Y., Johnston, J., Zeitlinger, J., & Rushlow, C. (2015) · Genome Research · doi:10.1101/gr.192542.115 · Cited by 176
Kane, D. A., Hammerschmidt, M., Mullins, M. C., Maischein, H.-M., Brand, M., van Eeden, F. J. M., Furutani-Seiki, M., Granato, M., Haffter, P., Heisenberg, C.-P., et al. (1996) · Development · doi:10.1242/dev.123.1.47 · Cited by 173
Subunits of the Drosophila CCR4-NOT complex and their roles in mRNA deadenylation
Temme, C., Zhang, L., Kremmer, E., Ihling, C. H., Chartier, A., Sinz, A., Simonelig, M., & Wahle, E. (2010) · RNA · doi:10.1261/rna.2145110 · Cited by 173
Establishment and maintenance of heritable chromatin structure during early Drosophila embryogenesis
Blythe, S. A., & Wieschaus, E. F. (2016) · eLife · doi:10.7554/elife.20148 · Cited by 173
Deadenylation of maternal mRNAs mediated by miR-427 in Xenopus laevis embryos
Lund, E., Liu, M., Hartley, R. S., Sheets, M. D., & Dahlberg, J. E. (2009) · RNA · doi:10.1261/rna.1882009 · Cited by 170
The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3′ processing
Abe, K., Yamamoto, R., Franke, V., Cao, M., Suzuki, Y., Suzuki, M. G., Vlahoviček, K., Svoboda, P., Schultz, R. M., & Aoki, F. (2015) · The EMBO Journal · doi:10.15252/embj.201490648 · Cited by 169
Higher chromatin mobility supports totipotency and precedes pluripotency in vivoPreprint
Bošković, A., Eid, A., Pontabry, J., Ishiuchi, T., Spiegelhalter, C., Edupuganti, R. R., Meshorer, E., & Torres‐Padilla, M. (2014) · Genes & Development · doi:10.1101/gad.238881.114 · Cited by 167
Blythe, S. A., Cha, S.-W., Tadjuidje, E., Heasman, J., & Klein, P. S. (2010) · Developmental Cell · doi:10.1016/j.devcel.2010.07.007 · Cited by 165
Pritchard, D. K., & Schubiger, G. (1996) · Genes & Development · doi:10.1101/gad.10.9.1131 · Cited by 164
Boag, P. R., Nakamura, A., & Blackwell, T. K. (2005) · Development · doi:10.1242/dev.02060 · Cited by 163
Eichhorn, S. W., Subtelny, A. O., Kronja, I., Kwasnieski, J. C., Orr‐Weaver, T. L., & Bartel, D. P. (2016) · eLife · doi:10.7554/elife.16955 · Cited by 163
Ramos, S. B. V., Stumpo, D. J., Kennington, E. A., Phillips, R. S., Bock, C. B., Ribeiro-Neto, F., & Blackshear, P. J. (2004) · Development · doi:10.1242/dev.01336 · Cited by 161
Prioleau, M. (1994) · Cell · doi:10.1016/0092-8674(94)90158-9 · Cited by 161
Amodeo, A. A., Jukam, D., Straight, A. F., & Skotheim, J. M. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1413990112 · Cited by 160
Systemic Loss and Gain of Chromatin Architecture throughout Zebrafish Development
Kaaij, L. J. T., van der Weide, R. H., Ketting, R. F., & de Wit, E. (2018) · Cell Reports · doi:10.1016/j.celrep.2018.06.003 · Cited by 160
A global change in RNA polymerase II pausing during the Drosophila midblastula transition
Chen, K., Johnston, J. J., Shao, W., Meier, S. R., Staber, C. J., & Zeitlinger, J. (2013) · eLife · doi:10.7554/elife.00861 · Cited by 158
The developmental proteome of Drosophila melanogasterPreprint
Casas-Vila, N., Bluhm, A., Sayols, S., Dinges, N., Dejung, M., Altenhein, T., Kappei, D., Altenhein, B., Roignant, J.-Y., & Butter, F. (2017) · Genome Research · doi:10.1101/gr.213694.116 · Cited by 158
Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila
Sysoev, V. O., Fischer, B., Frese, C. K., Gupta, I., Krijgsveld, J., Hentze, M. W., Castelló, A., & Ephrussi, A. (2016) · Nature Communications · doi:10.1038/ncomms12128 · Cited by 156
Smaug, a novel and conserved protein, contributes to repression of nanos mRNA translation in vitro
Smibert, C. A., Lie, Y. S., Shillinglaw, W., Henzel, W. J., & Macdonald, P. M. (1999) · RNA · doi:10.1017/s1355838299991392 · Cited by 152
Joseph, S. R., Pálfy, M., Hilbert, L., Kumar, M., Karschau, J., Zaburdaev, V., Shevchenko, A., & Vastenhouw, N. L. (2017) · eLife · doi:10.7554/elife.23326 · Cited by 151
Self-citationBenoit, B., He, C. H., Zhang, F., Votruba, S. M., Tadros, W., Westwood, J. T., Smibert, C. A., Lipshitz, H. D., & Theurkauf, W. E. (2009) · Development · doi:10.1242/dev.031815 · Cited by 149
Self-citationProcessing bodies and germ granules are distinct RNA granules that interact in C. elegans embryos
Gallo, C. M., Munro, E., Rasoloson, D., Merritt, C., & Seydoux, G. (2008) · Developmental Biology · doi:10.1016/j.ydbio.2008.07.008 · Cited by 148
Tan, M. H., Au, K. F., Yablonovitch, A. L., Wills, A. E., Chuang, J., Baker, J. C., Wong, W. H., & Li, J. B. (2012) · Genome Research · doi:10.1101/gr.141424.112 · Cited by 146
Barckmann, B., Pierson, S., Dufourt, J., Papin, C., Armenise, C., Port, F., Grentzinger, T., Chambeyron, S., Baronian, G., Desvignes, J., et al. (2015) · Cell Reports · doi:10.1016/j.celrep.2015.07.030 · Cited by 145
Loss of gene function through rapid mitotic cycles in the Drosophila embryo
Rothe, M., Pehl, M. J., Taubert, H., & Jäckle, H. (1992) · Nature · doi:10.1038/359156a0 · Cited by 144
Small RNA class transition from siRNA/piRNA to miRNA during pre-implantation mouse development
Ohnishi, Y., Totoki, Y., Toyoda, A., Watanabe, T., Yamamoto, Y., Tokunaga, K., Sakaki, Y., Sasaki, H., & Hohjoh, H. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq229 · Cited by 141
Peat, J. R., Dean, W., Clark, S. J., Krueger, F., Smallwood, S. A., Ficz, G., Kim, J. K., Marioni, J. C., Hore, T. A., & Reik, W. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.11.034 · Cited by 141
Genome-wide analysis of mRNA decay patterns during early Drosophiladevelopment
Thomsen, S., Anders, S., Janga, S. C., Huber, W. K., & Alonso, C. R. (2010) · Genome biology · doi:10.1186/gb-2010-11-9-r93 · Cited by 141
Quantitative developmental transcriptomes of the sea urchin Strongylocentrotus purpuratus
Tu, Q., Cameron, R. A., & Davidson, E. H. (2013) · Developmental Biology · doi:10.1016/j.ydbio.2013.11.019 · Cited by 139
Ancelin, K., Syx, L., Borensztein, M., Ranisavljevic, N., Vassilev, I., Briseño-Roa, L., Liu, T., Metzger, E., Servant, N., Barillot, E., et al. (2016) · eLife · doi:10.7554/elife.08851 · Cited by 139
Early transcription inCaenorhabditis elegansembryos
Edgar, L. G., Wolf, N., & Wood, W. B. (1994) · Development · doi:10.1242/dev.120.2.443 · Cited by 136
Kronja, I., Yuan, B., Eichhorn, S. W., Dzeyk, K., Krijgsveld, J., Bartel, D. P., & Orr‐Weaver, T. L. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.05.002 · Cited by 133
Rabani, M., Pieper, L. M., Chew, G.-L., & Schier, A. F. (2017) · Molecular Cell · doi:10.1016/j.molcel.2017.11.014 · Cited by 133
Nuclear Size Scaling during Xenopus Early Development Contributes to Midblastula Transition Timing
Jevtić, P., & Levy, D. L. (2014) · Current Biology · doi:10.1016/j.cub.2014.10.051 · Cited by 131
Almouzni, G., & Wolffe, A. P. (1995) · The EMBO Journal · doi:10.1002/j.1460-2075.1995.tb07164.x · Cited by 129
Chang, H., Yeo, J., Kim, J.-G., Kim, H., Lim, J., Lee, M., Kim, H. H., Ohk, J., Jeon, H., Lee, H., et al. (2018) · Molecular Cell · doi:10.1016/j.molcel.2018.03.004 · Cited by 127
Expression of MSY2 in Mouse Oocytes and Preimplantation Embryos1
Yu, J., Hecht, N. B., & Schultz, R. M. (2001) · Biology of Reproduction · doi:10.1095/biolreprod65.4.1260 · Cited by 126
Translational Repression Dependent on the Interaction of the Xenopus Y-box Protein FRGY2 with mRNA
Matsumoto, K., Meric, F., & Wolffe, A. P. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.37.22706 · Cited by 125
Sculpting the Transcriptome During the Oocyte-to-Embryo Transition in Mouse
Svoboda, P., Franke, V., & Schultz, R. M. (2015) · Current topics in developmental biology/Current Topics in Developmental Biology · doi:10.1016/bs.ctdb.2015.06.004 · Cited by 125
DPPA2 and DPPA4 are necessary to establish a 2C‐like state in mouse embryonic stem cells
Iaco, A. D., Coudray, A., Duc, J., & Trono, D. (2019) · EMBO Reports · doi:10.15252/embr.201847382 · Cited by 124
Coupling of zygotic transcription to mitotic control at theDrosophilamid-blastula transition
Lu, X., Li, J., Elemento, O., Tavazoie, S., & Wieschaus, E. F. (2009) · Development · doi:10.1242/dev.034421 · Cited by 123
Kaiso is a genome-wide repressor of transcription that is essential for amphibian development
Ruzov, A. S., Dunican, D. S., Prokhortchouk, A., Pennings, S., Stancheva, I., Prokhortchouk, E., & Meehan, R. R. (2004) · Development · doi:10.1242/dev.01549 · Cited by 122
Essential Role for Endogenous siRNAs during Meiosis in Mouse Oocytes
Stein, P., Rozhkov, N. V., Li, F., Cárdenas, F. L., Davydenk, O., Vandivier, L. E., Gregory, B. D., Hannon, G. J., & Schultz, R. M. (2015) · PLoS Genetics · doi:10.1371/journal.pgen.1005013 · Cited by 121
Maternal Argonaute 2 Is Essential for Early Mouse Development at the Maternal-Zygotic Transition
Lykke‐Hartmann, K., Gilchrist, M. J., Grabarek, J. B., Das, P. P., Miska, E. A., & Zernicka‐Goetz, M. (2008) · Molecular Biology of the Cell · doi:10.1091/mbc.e08-02-0219 · Cited by 118
Transcriptome Profiling of Human Pre-Implantation Development
Zhang, P., Zucchelli, M., Bruce, S., Hambiliki, F., Stavreus-Evers, A. C., Levkov, L., Skottman, H., Kerkelä, E., Kere, J., & Hovatta, O. (2009) · PLoS ONE · doi:10.1371/journal.pone.0007844 · Cited by 117
Embryonic transcription is controlled by maternally defined chromatin state
Hontelez, S., van Kruijsbergen, I., Γεωργίου, Γ., van Heeringen, S. J., Bogdanović, O., Lister, R., & Veenstra, G. J. C. (2015) · Nature Communications · doi:10.1038/ncomms10148 · Cited by 117
Benoît, P., Papin, C., Kwak, J. E., Wickens, M., & Simonelig, M. (2008) · Development · doi:10.1242/dev.021444 · Cited by 116
AUUUA Sequences Direct mRNA Deadenylation Uncoupled from Decay during Xenopus Early Development
Voeltz, G. K., & STEITZ, J. A. (1998) · Molecular and Cellular Biology · doi:10.1128/mcb.18.12.7537 · Cited by 115
Chen, L.-N., Dumelie, J. G., Li, X., Cheng, M. H. K., Yang, Z., Laver, J. D., Siddiqui, N. U., Westwood, J. T., Morris, Q., Lipshitz, H. D., et al. (2014) · Genome biology · doi:10.1186/gb-2014-15-1-r4 · Cited by 115
Self-citationGuven-Ozkan, T., Nishi, Y., Robertson, S. M., & Lin, R. (2008) · Cell · doi:10.1016/j.cell.2008.07.040 · Cited by 113
High-resolution analysis of gene activity during the Xenopus mid-blastula transition
Collart, C., Owens, N. D. L., Bhaw, L., Cooper, B. R. D., Domenico, E. D., Patrushev, I., Sesay, A. K., Smith, J. C., Smith, J. C., & Gilchrist, M. J. (2014) · Development · doi:10.1242/dev.102012 · Cited by 106
Linker histone variants control chromatin dynamics during early embryogenesis
Saeki, H., Ohsumi, K., Aihara, H., et al. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0409824102 · Cited by 106
Canonical nucleosome organization at promoters forms during genome activationPreprint
Zhang, Y., Vastenhouw, N. L., Feng, J., Fu, K., Wang, C., Ge, Y., Pauli, A., Hummelen, P. V., Schier, A., & Liu, X. (2014) · Genome Research · doi:10.1101/gr.157750.113 · Cited by 104
Self-citationMedvedev, S., Pan, H., & Schultz, R. M. (2011) · Biology of Reproduction · doi:10.1095/biolreprod.111.091710 · Cited by 102
Dekens, M. P. S., Pelegri, F. J., Maischein, H., & Nüsslein‐Volhard, C. (2003) · Development · doi:10.1242/dev.00606 · Cited by 102
Quantifying post-transcriptional regulation in the development of Drosophila melanogaster
Becker, K., Bluhm, A., Casas-Vila, N., Dinges, N., Dejung, M., Sayols, S., Kreutz, C., Roignant, J., Butter, F., & Legewie, S. (2018) · Nature Communications · doi:10.1038/s41467-018-07455-9 · Cited by 101
Changing rates of histone mRNA synthesis and turnover in Drosophila embryos
Anderson, K. V., & Lengyel, J. A. (1980) · Cell · doi:10.1016/0092-8674(80)90435-3 · Cited by 95
Endogenous siRNAs: regulators of internal affairs
Piatek, M. J., & Werner, A. (2014) · Biochemical Society Transactions · doi:10.1042/bst20140068 · Cited by 93
Laver, J. D., Li, X., Ray, D., Cook, K. B., Hahn, N. A., Nabeel‐Shah, S., Kekis, M., Luo, H., Marsolais, A. J., Fung, K. Y., et al. (2015) · Genome biology · doi:10.1186/s13059-015-0659-4 · Cited by 92
Self-citationWispy, the Drosophila Homolog of GLD-2, Is Required During Oogenesis and Egg Activation
Cui, J., Sackton, K. L., Horner, V. L., Kumar, K. E., & Wolfner, M. F. (2008) · Genetics · doi:10.1534/genetics.107.084558 · Cited by 90
Veenstra, G. J. C., Destrée, O., & Wolffe, A. P. (1999) · Molecular and Cellular Biology · doi:10.1128/mcb.19.12.7972 · Cited by 90
Grainyhead and Zelda compete for binding to the promoters of the earliest-expressed Drosophila genes
Harrison, M. M., Botchan, M. R., & Cline, T. W. (2010) · Developmental Biology · doi:10.1016/j.ydbio.2010.06.026 · Cited by 89
D’Agostino, I. B., Merritt, C., Chen, P.-L., Seydoux, G., & Subramaniam, K. (2006) · Developmental Biology · doi:10.1016/j.ydbio.2005.11.046 · Cited by 89
Loedige, I., Stotz, M., Qamar, S., Kramer, K., Hennig, J., Schubert, T. E. O., Löffler, P., Längst, G., Merkl, R., Urlaub, H., et al. (2014) · Genes & Development · doi:10.1101/gad.236513.113 · Cited by 88
DAZL and CPEB1 regulate mRNA translation synergistically during oocyte maturation
Martins, J. P. S., Liu, X., Oke, A., Arora, R., Franciosi, F., Viville, S., Laird, D. J., Fung, J. C., & Conti, M. (2016) · Journal of Cell Science · doi:10.1242/jcs.179218 · Cited by 88
A database of mRNA expression patterns for the sea urchin embryo
Zheng, W., Angerer, R. C., & Angerer, L. M. (2006) · Developmental Biology · doi:10.1016/j.ydbio.2006.08.034 · Cited by 86
Materna, S. C., Nam, J., & Davidson, E. H. (2010) · Gene Expression Patterns · doi:10.1016/j.gep.2010.04.002 · Cited by 85
Regulation of Maternal Transcript Destabilization During Egg Activation in Drosophila
Tadros, W., Houston, S., Bashirullah, A., Cooperstock, R. L., Semotok, J. L., Reed, B. H., & Lipshitz, H. D. (2003) · Genetics · doi:10.1093/genetics/164.3.989 · Cited by 85
Self-citationWidespread Enhancer Dememorization and Promoter Priming during Parental-to-Zygotic Transition
Zhang, B., Wu, X., Zhang, W., Shen, W., Sun, Q., Liu, K., Zhang, Y., Wang, Q., Li, Y., Meng, A., et al. (2018) · Molecular Cell · doi:10.1016/j.molcel.2018.10.017 · Cited by 85
Laue, K., Rajshekar, S., Courtney, A. J., Lewis, Z., & Goll, M. G. (2019) · Nature Communications · doi:10.1038/s41467-019-09582-3 · Cited by 85
The Ccr4-Not deadenylase complex constitutes the major poly(A) removal activity inC. elegans
Nousch, M., Techritz, N., Hampel, D., Millonigg, S., & Eckmann, C. R. (2013) · Journal of Cell Science · doi:10.1242/jcs.132936 · Cited by 83
Weidmann, C. A., Raynard, N. A., Blewett, N. H., Etten, J. V., & Goldstrohm, A. C. (2014) · RNA · doi:10.1261/rna.046029.114 · Cited by 83
Laver, J. D., Marsolais, A. J., Smibert, C. A., & Lipshitz, H. D. (2015) · Current topics in developmental biology/Current Topics in Developmental Biology · doi:10.1016/bs.ctdb.2015.06.007 · Cited by 83
Self-citationAoshima, K., Inoue, E., Sawa, H., & Okada, Y. (2015) · EMBO Reports · doi:10.15252/embr.201439700 · Cited by 82
Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transitionPreprint
Despic, V., Dejung, M., Gu, M., Krishnan, J., Zhang, J., Herzel, L., Straube, K., Gerstein, M., Butter, F., & Neugebauer, K. M. (2017) · Genome Research · doi:10.1101/gr.215954.116 · Cited by 82
An essential role for transcription before the MBT in Xenopus laevis
Skirkanich, J., Luxardi, G., Yang, J., Kodjabachian, L., & Klein, P. S. (2011) · Developmental Biology · doi:10.1016/j.ydbio.2011.06.010 · Cited by 81
Developmental features of DNA methylation during activation of the embryonic zebrafish genome
Andersen, I. S., Reiner, A. H., Aanes, H., Aleström, P., & Collas, P. (2012) · Genome biology · doi:10.1186/gb-2012-13-7-r65 · Cited by 81
Veil, M., Yampolsky, L. Y., Grüning, B. A., & Onichtchouk, D. (2019) · Genome Research · doi:10.1101/gr.240572.118 · Cited by 81
Proteomic-based identification of maternal proteins in mature mouse oocytes
Zhang, P., Ni, X., Guo, Y. L., Guo, X., Wang, Y., Zhou, Z., Huo, R., & Sha, J. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-348 · Cited by 80
Stoeckius, M., Grün, D., Kirchner, M., Ayoub, S., Torti, F., Piano, F., Herzog, M., Selbach, M., & Rajewsky, N. (2014) · The EMBO Journal · doi:10.15252/embj.201488769 · Cited by 80
Cited by
eIF4E1b is a non-canonical eIF4E protecting maternal dormant mRNAs
Lorenzo-Orts, L., Strobl, M., Steinmetz, B., Leesch, F., Pribitzer, C., Roehsner, J., Schutzbier, M., Dürnberger, G., & Pauli, A. (2023) · EMBO Reports · doi:10.1038/s44319-023-00006-4 · Cited by 23
Metadata
- Authors
- Vastenhouw, N. L., Cao, W. X., & Lipshitz, H. D.
- Venue
- Development
- Publisher
- The Company of Biologists
- Published
- 2019-06-01
- Volume
- 146
- Issue
- 11
- ISSN
- 0950-1991 (ISSN-L)
- 1477-9129
- OpenAlex
- W2951614277
- Cited by
- 445
- References
- 269
- FWCI
- 12.03
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
