The DOI matches its Crossref record; 229 of the 229 references it cites were found in a registry or an index; 6 of the 285 sources its claims cite were checked for support.
HDACs and the epigenetic plasticity of cancer cells: Target the complexity
Open accessAbstract
Cancer cells must adapt to the hostile conditions of the microenvironment in terms of nutrition, space, and immune system attack. Mutations of DNA are the drivers of the tumorigenic process, but mutations must be able to hijack cellular functions to sustain the spread of mutant genomes. Transcriptional control is a key function in this context and is controlled by the rearrangement of the epigenome. Unlike genomic mutations, the epigenome of cancer cells can in principle be reversed. The discovery of the first epigenetic drugs triggered a contaminating enthusiasm. Unfortunately, the complexity of the epigenetic machinery has frustrated this enthusiasm. To develop efficient patient-oriented epigenetic therapies, we need to better understand the nature of this complexity. In this review, we will discuss recent advances in understanding the contribution of HDACs to the maintenance of the transformed state and the rational for their selective targeting.
Overview
AI snapshot
Written from the paper’s full text.
TL;DR
This review argues that HDACs are critical but context-dependent regulators of cancer, with both pro-oncogenic and tumor-suppressive activities, so selective targeting requires understanding their multiprotein complexes. It surveys class I, IIa, and IV HDACs and their roles in therapy, resistance, and immunotherapy.
Key findings
- As single agents, HDAC inhibitors are clinically limited to cutaneous T-cell lymphoma and peripheral T-cell lymphoma; all approved HDACIs are pan-selective inhibitors of zinc-dependent HDACs. A ClinicalTrials.gov snapshot reports 725 HDACI cancer trials: 351 completed, 137 terminated, 80 recruiting, 60 active not recruiting, 50 unknown, and 32 withdrawn; by phase, 424 phase 1, 387 phase 2, 30 phase 3, and 3 phase 4.
- HDAC1/2, HDAC3, HDAC8, class IIa HDACs, and HDAC11 show context-dependent effects. For example, in GBM, HDAC1 silencing affects glioma stem cell proliferation, but in vivo absence of HDAC1 leads to a more aggressive/invasive phenotype via STAT3; high HDAC1 expression correlates with poorer prognosis, whereas HDAC2 expression correlates with better prognosis.
- Immunotherapy combinations are highlighted: in the phase 2 PEMDAC trial, entinostat plus pembrolizumab in metastatic uveal melanoma achieved a median overall survival of 13.4 months versus a ten-month historical benchmark; in metastatic clear cell renal cell carcinoma, entinostat with high-dose IL2 downregulated Fox3p and reduced Tregs.
- HDAC8 is frequently overexpressed in tumors; the HDAC8 inhibitor PCI-34051 decreases cell growth and causes apoptosis in T-cell-derived tumor lines, and HDAC8 deletion significantly reduces AML incidence while HDAC8 inhibition increases chemotherapy sensitivity in mice and patients.
Methods
- Narrative review; no primary experimental data are reported. The paper focuses on zinc-dependent HDACs in classes I, IIa, and IV and their contribution to cancer and therapeutic targeting.
- Data sources are published literature and clinical trial data obtained from ClinicalTrials.gov, including 725 clinical trials using HDACIs for cancer treatment.
- Main analysis is a qualitative synthesis by HDAC class/isoform, covering structural features, multiprotein complexes, oncogenic and tumor-suppressive functions, DNA damage response, immunotherapy, resistance, and inhibitors.
Limitations
- Stated by the authors: it remains unclear how HDACs select the right substrate in a time- and context-dependent manner; little is known about the multiprotein complexes that accompany different HDACs; and space limitations prevented citing all relevant manuscripts.
- Stated by the authors: HDACs are frequently implicated in cancer but do not always involve epigenetic targets, and conflicting results exist about their biological functions.
- Evident from the text: this is a narrative review without a systematic search or quantitative meta-analysis; many mechanistic claims derive from preclinical models, cell lines, or mouse studies, and the clinical trial data are descriptive registry counts rather than patient-level outcomes.
Model-written summary. Check it against the paper before relying on it.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
246 Not checked yet · 17 Own interpretation · 4 Supported · 2 Partly supported · accuracy not yet measured
Every source the paper cites for this claim was checked and supports it.
In the paper
“Here, the Sall4/Hdac2 complex represses their expression through an epigenetic switch involving the reduction of H3K27ac levels (Diener et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > HDAC3-SMRT-HDAC4 complex HDAC4
What the sources say
- Supportedcites Diener et al., 2021 source
The Discussion states that SALL4 and HDAC2 bind melanoma invasiveness genes and that SALL4 knockdown increases both H3K27 acetylation and their transcription. The Results section on differential histone acetylation likewise reports gained H3K27ac marks and increased transcription for invasiveness genes after knockdown, supporting the proposed repression mechanism. Page numbers are not provided in our copy. (LLM, conf=0.91)
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
- Supported
Every source the paper cites for this claim was checked and supports it.
In the paper
“Consistent with this, silencing of HDAC3 promotes PD-L1 expression.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Supportedcites Deng et al., 2019 source
The Results section ('HDAC3 inhibition promotes PD-L1 expression in B-cell lymphomas') reports that siRNA-mediated depletion of HDAC3 increased surface PD-L1 in A20 cells. This directly supports the claim in the B-cell lymphoma cells studied. (LLM, conf=0.94)
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
- Supported
The cited sources support only part of this claim — read each source’s verdict below.
In the paper
“In lung cancer, low levels of AMPK promote cell proliferation and tumour growth.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Partly supportedcites Feng et al., 2020 sourceExperimental — accuracy not yet measured
The Results section (‘AMPK is associated with proliferation and metastasis of lung cancer’) reports that low AMPK expression slightly promoted proliferation in A549 and HBE cells. But in the A549 mouse xenograft experiment, tumour weight did not differ significantly between the low-AMPK and control groups, so the claim that low AMPK promotes tumour growth is not supported. (LLM, conf=0.91)
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
- Partly supported
Every source the paper cites for this claim was checked and supports it.
In the paper
“This evidence is more relevant in neuroblastoma cells characterized by MYCN amplification (Thole et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Supportedcites Thole et al., 2017 source
The Results section states that HDAC11 is important for neuroblastoma-cell viability with and without MYCN amplification, “particularly in the presence of MYCN amplification.” This supports the claim that the evidence is more relevant to MYCN-amplified cells. (LLM, conf=0.93)
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
- Supported
The cited sources support only part of this claim — read each source’s verdict below.
In the paper
“In addition, loss of Hdac11 promotes brown adipose tissue accumulation and function.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Partly supportedcites Sun et al., 2018 sourceExperimental — accuracy not yet measured
The Results section on thermogenic potential reports increased UCP1 expression in brown adipose tissue (BAT) of HDAC11-knockout mice, and the Discussion says deletion promoted BAT thermogenic function. Neither section reports increased BAT accumulation; the reported reduction in tissue weight concerns white adipose tissue. (LLM, conf=0.86)
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
- Partly supported
Every source the paper cites for this claim was checked and supports it.
In the paper
“It has been known for several years that HDAC11 negatively controls IL-10 transcriptional activity in antigen-presenting cells and regulates immune tolerance (Villagra et al., 2009).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.3. HDAC11 and the immune system
What the sources say
- Supportedcites Villagra et al., 2009 source
The Results section (‘Effects of HDAC11 overexpression in mouse and human APCs’) states that HDAC11 overexpression inhibited Il10 transcriptional activity in APCs, while inhibiting HDAC11 had the opposite effect. The Discussion identifies HDAC11 as a transcriptional repressor of Il10 in APCs and links it to APC-mediated immune activation versus tolerance. (LLM, conf=0.94)
boosteddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
- Supported
In the paper
“HDAC1/2 deacetylate K518ac of GLI1 to allow its association with chromatin and activation of transcription (Canettieri et al., 2010).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4. HDAC1 and HDAC2
What the sources say
- Not checked yetcites Canettieri et al., 2010 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC2, together with HDAC3, can form a noncanonical complex with PACS-1 (phosphofurin acidic cluster sorting protein-1).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.5. HDAC1/2, the DNA damage response (DDR) and the genome stability
What the sources say
- Not checked yetcites Mani et al., 2020 source
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Lysine 85 of linker histone H1 is dynamically acetylated in response to DNA damage by the antagonistic activities of the acetyl-transferase p300/CBPassociated factor (PCAF/KAT2B) and HDAC1.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.5. HDAC1/2, the DNA damage response (DDR) and the genome stability
What the sources say
- Not checked yetcites Li et al., 2018
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“For example, HDAC2, but not HDAC1 and HDAC6, represses the formation of primary cilia in pancreatic ductal carcinoma cells (Kobayashi et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4. HDAC1 and HDAC2
What the sources say
- Not checked yetcites Kobayashi et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“The use of HDAC inhibitors (HDACIs) in clinic, as single agent, is limited to few hematological tumors: the cutaneous T-cell lymphoma and the peripheral T-cell lymphoma (Bose, Dai and Grant, 2014;Moskowitz and Horwitz, 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 2. HDACs
What the sources say
- Not checked yetcites Bose, Dai and Grant, 2014
- Not checked yetcites Moskowitz and Horwitz, 2017
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“By deacetylating of H3K56, they promote NHEJ repair (Miller et al., 2010).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.5. HDAC1/2, the DNA damage response (DDR) and the genome stability
What the sources say
- Not checked yetcites Miller et al., 2010 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“As a sensor, it coordinates signaling responses to environmental stimuli and its repression sustains cell proliferation (Peixoto, Richard, Pant, Biswas, & Gradilone, 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4. HDAC1 and HDAC2
What the sources say
- Not checked yetcites Peixoto, Richard, Pant, Biswas, & Gradilone, 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“IKAROS binds to the promoter of the anti-apoptotic gene BCL2L1/BCLXL where it recruits HDAC1, to repress transcription (Song et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.4. HDAC1/2 as tumor suppressors
What the sources say
- Not checked yetcites Song et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“Focusing on a single target gene could lead to misinterpretation, as HDAC1/2 multiprotein complexes can also repress the expression of pro-apoptotic genes (Contreras et al., 2013;Piazza et al., 2013;Ramsey, He, Forster, Ory, & Ellisen, 2011).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.4. HDAC1/2 as tumor suppressors
What the sources say
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“However, when the same GBM cells are transplanted in a different microenvironment in vivo, the absence of HDAC1 leads to a more aggressive/ invasive phenotype through activation of STAT3 (Lo Cascio et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.2. Glioblastoma multiforme (GBM) and the paradigm of the complexity
What the sources say
- Not checked yetcites Lo Cascio et al., 2021 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“The non-selective action of these inhibitors could be an explanation for the side effects, also severe, experienced by some patients.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 2. HDACs
hedgedconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Consequently, impairment of HDAC1/2 activities both genetically and pharmacologically impairs cell proliferation and survival (Was et al., 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.2. Glioblastoma multiforme (GBM) and the paradigm of the complexity
What the sources say
- Not checked yetcites Was et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Within the CoREST complex, deubiquitylation of HDAC1 increases its interaction with SIN3 (Yang et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.5. HDAC1/2, the DNA damage response (DDR) and the genome stability
What the sources say
- Not checked yetcites Yang et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In GBM, silencing of HDAC1, but not HDAC2, profoundly affects proliferation of glioma stem cells by reactivating TP53 activities.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.2. Glioblastoma multiforme (GBM) and the paradigm of the complexity
What the sources say
- Not checked yetcites Lo Cascio et al., 2021 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Epigenetic switching promotes MDSC differentiation into a more interstitial, macrophage-like phenotype.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Lu et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In this context, HDAC2 plays the main role, independent of HDAC1.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Kumar et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In the presence of entinostat, increased IFN-γ levels in the tumor microenvironment modulate the local cytokine landscape and promote antitumor myeloid polarization (Nguyen et al., 2018).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Nguyen et al., 2018 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Entinostat was also identified as a potent inhibitor of regulatory activities responsible for immune-evasion and metastatic potential in patients with gastroenteropancreatic neuroendocrine tumors (GEP-NET).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Alvarez et al., 2018 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“A peculiar feature of HDAC3 is its interaction with nuclear receptor co-repressor 1 (NCOR1) and silencing mediator of retinoic acid and thyroid hormone receptor (SMRT/NCOR2) (Fig. 4).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.1. Basic concepts
What the sources say
- Not checked yetcites Emmett & Lazar, 2019 source
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“For example, entinostat may increase the infiltration of MDSC (myeloid-derived suppressor cells) in the tumor microenvironment.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Kumar et al., 2017 source
hedgedconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Entinostat can suppress the immunosuppressive effect of tumorinfiltrating myeloid cells and reprogram them to eliminate antigennegative tumor cells.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Nguyen et al., 2018 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“Simply abrogating class I HDAC activity without any interference with other epigenetic regulators is sufficient to influence the expression of cytokines, chemokines, and other inflammatory signals that remodel immune cells activities (Hicks et al., 2020;Hicks et al., 2021;Nguyen et al., 2018).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In syngeneic mouse models of lung and renal cell carcinoma, entinostat alone inhibited the immunosuppressive function of both polymorphonuclear and monocytic-myeloid-derived suppressor cell populations (Orillion et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Orillion et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Mutant TBL1XR1 shifts the repressive SMRT/HDAC3 complex from binding BCL6 to BACH2 TFs.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.1. Basic concepts
What the sources say
- Not checked yetcites Venturutti et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“Cancer cells at the primary site can sculpture a pre-metastatic niche by releasing soluble factors and extracellular vesicles (Liu & Cao, 2016;Peinado et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Liu & Cao, 2016
- Not checked yetcites Peinado et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“A reprogramming that inhibits trafficking of MDSC through downregulation of CCR2 and CXCR2.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Lu et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Indeed, knockdown of MIDEAS or DNTTIP1 in cancer cells leads to misalignment of chromosomes during mitosis.(Turnbull et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.5. HDAC1/2, the DNA damage response (DDR) and the genome stability
What the sources say
- Not checked yetcites Turnbull et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“Genetic or pharmacological targeting of the CoREST complex enhances anti-tumour activity in mice (Bantscheff et al., 2011;Xiong et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“This study showed that a small group of patients benefited from the combined treatment.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Ny et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Interestingly, low-dose adjuvant epigenetic therapy (a combination of the DNA methyltransferase inhibitor 5-azacytidine and entinostat) can disrupt the premetastatic microenvironment and inhibit both metastasis formation and growth.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Lu et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Interestingly, somatic mutations of TBL1XR1 are observed in the most aggressive B-cell lymphomas.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.1. Basic concepts
What the sources say
- Not checked yetcites Venturutti et al., 2020 source
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“However, the epigenetic repression exerted is dynamic and fully reversible.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“HDAC8 is subject to allosteric regulation, with populations moving back and forth between active and inactive states.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 3.1. Structural features and rational of targeting
What the sources say
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“In HDAC8, the presence of a tryptophan limits the available space in the foot pocket.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 3.1. Structural features and rational of targeting
What the sources say
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Epigenetic independent activity of HDAC3 has been associated with breast cancer cell metastasis.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Zhang et al., 2017
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“CREBBP silencing in murine and human cells triggers the depletion of H3K27ac marks at enhancers and changes in gene expression that are very similar to signatures characterizing human lymphomas with CREBBP mutations.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Jiang et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“A similar effect of HDAC3 as an antagonist for the activation of enhancers involved in tumorigenesis has been observed in B-cell lymphomas (Höpken, 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Höpken, 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“A pro-oncogenic role of HDAC3 has also been identified in leukemogenesis.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Mehdipour et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“DNMT1 is required to maintain the proliferation of MM.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Harada et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Its deletion reactivates the MYOD1-dependent myogenic program.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Phelps et al., 2016 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“It is important to note that these HATs can be coopted, in different cancer contexts, to sustain the transcriptional addiction required for cell fitness (Hogg et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Hogg et al., 2021 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Mice deficient for Hdac3 do not develop because of defects at the gastrulation stage (Emmett & Lazar, 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.1. Basic concepts
What the sources say
- Not checked yetcites Emmett & Lazar, 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC3 is recruited to critical enhancers via the BCL6/NCOR2 complex to promote lymphomagenesis (Jiang et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Jiang et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“An interplay that is also engaged as adaptive response to pan-HDACIs (Minisini et al., 2022).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Minisini et al., 2022 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In multiple myeloma (MM), HDAC3 deacetylates DNMT1, thereby increasing its stability.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Harada et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Another non-histone target of HDAC3 that plays a role in cancer is DNA methyltransferase 1 (DNMT1).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Harada et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In colorectal carcinoma, CBX4 negatively regulates cancer metastasis by repressing RUNX2 transcription.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Wang et al., 2016
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Moreover, down-modulation of Hdac3 or its inhibition supported the differentiation of PML-RARα-expressing cells (Mehdipour et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Mehdipour et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“A general antagonistic activity of the NCOR1/HDAC3 complex in regulating H3K27ac turnover at genomic loci under the supervision of CREBBP or EP300 was confirmed by additional studies (Basu et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Basu et al., 2020 source
boosteddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“The generation of tissue-specific deletions of Hdac3 in mice has revealed the critical role of this deacetylase in several contexts (Emmett & Lazar, 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.1. Basic concepts
What the sources say
- Not checked yetcites Emmett & Lazar, 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Interestingly, the downregulation of HDAC4, albeit to a lesser extent, also promoted the myogenic program (Phelps, Bailey, Vleeshouwer-Neumann, & Chen, 2016).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Phelps et al., 2016 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In acute promyelocytic leukemia (APL), HDAC3 contributes to the repressive influence of the oncogenic fusion protein PML-RARα.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Mehdipour et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“Not surprisingly, HDAC3, similar to other HDACs and other epigenetic regulators, can exert antiproliferative effects.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
plainconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC3 can deacetylate the Forkhead box (FoxO) TF FoxO3, due to the bridging function of the protein Geminin.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Zhang et al., 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In pediatric rhabdomyosarcomas the HDAC3/NCOR1/NCOR2 complex acts as a differentiation brake.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Phelps et al., 2016 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Tumors in which, mutations that specifically inactivate HAT enzymatic activity are the driving oncogenic lesions, should benefit from treatment with isoform specific HDAC inhibitors.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: unclear — It is unclear why the paper says it holds.
In the paper
“FoxO3 stimulates Dicer transcription and miRNA biogenesis.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Zhang et al., 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“These cells preferentially return to the germinal center to drive lymphomagenesis.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.1. Basic concepts
What the sources say
- Not checked yetcites Venturutti et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Follicular lymphomas and diffuse large B-cell lymphomas frequently accumulate mutations in epigenetic regulators, including the HATs CREBBP and EP300 (Morin et al., 2011).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Morin et al., 2011 source
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“These CREBBP lymphomas strictly rely on HDAC3 to reduce H3K27ac signals.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Jiang et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC3 was identified by a CRISPR/Cas9-based phenotypic screen of class I and class II HDAC genes.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Phelps et al., 2016 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“For example, in complex with CBX4, HDAC3 may act as a tumor suppressor.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Wang et al., 2016
hedgedconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“In principle, selective inhibition of HDAC3 could be therapeutic in rhabdomyosarcomas.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
hedgedconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Dicer level is critical for the metastatic process of breast cancer cells.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Zhang et al., 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Another non-histone target of HDAC3 is NICD1 (Notch1 intracellular domain).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Ferrante et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC3 is the only class I/II HDAC that promotes AKT phosphorylation.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Yan et al., 2018 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In B-cell lymphomas, HDAC3 is recruited by BCL6 as part of a complex with NCOR1/NCOR2 to the PD -L1 promoter.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Not checked yetcites Deng et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“The PD-1/ PD-L1 axis is hijacked by cancer cells to counteract immune activation, allowing the tumor to escape the immune response.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Not checked yetcites Constantinidou et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Preliminary studies have shown that HDAC3 affects genome instability.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.5. HDAC3, the DNA Damage Response (DDR) and the genome stability
What the sources say
- Not checked yetcites Bhaskara et al., 2010 source
hedgeddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“This result indicates an important mechanism of resistance to HDACIs therapy in vivo in PD-L1.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
hedgeddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“These mutations lead to abnormal activation of the androgen receptor (AR) and AKT-mTORC1 signaling pathways (Blattner et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Blattner et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In the presence of PD-L1, RGFP966 acted synergistically with anti PD-L1 therapy to suppress tumor growth (Deng et al., 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Not checked yetcites Deng et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Thus, inhibiting both HDAC3 and DNMT1 with their respective inhibitors will have a more potent anti-proliferative effect (Harada et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Harada et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Also in this context, the use of a relatively specific HDAC3 inhibitor (RGFP966, Fig. 3) shows promising anti-tumor activities in a preclinical model of prostate cancer (Yan et al., 2018).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Yan et al., 2018 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC3 represses gene programs associated with CD8 T-cells differentiation and cytotoxicity, by buffering H3K27ac levels at relative promoters (Tay et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Not checked yetcites Tay et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“An addiction validated in primary patient-derived xenograft models of DLBCL (diffuse large B-cell lymphoma).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Not checked yetcites Mondello et al., 2020 source
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“As described above for DNMT1, HDAC3 deacetylates NICD1 and controls its stability to sustain Notch signaling (Ferrante et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Ferrante et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Tip60 engagement is important to recruit other factors of the DDR (Mir et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.5. HDAC3, the DNA Damage Response (DDR) and the genome stability
What the sources say
- Not checked yetcites Mir et al., 2021 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“The use of BRD4097 (Fig. 3), a new HDAC3selective inhibitor, (Wagner et al., 2016), confirmed the oncogenic addiction for HDAC3 in these tumors.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Not checked yetcites Wagner et al., 2016 source
boosteddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“More generally, upregulation of PD-L1 is a common feature of the response to HDACIs (Minisini et al., 2022).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Not checked yetcites Minisini et al., 2022 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“The role of the BCL6-HDAC3 axis as an important oncogenic element has been observed in B-cell lymphomas characterized by CREBBP mutations (Jiang et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Not checked yetcites Jiang et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“HDAC3 deacetylates lysine 14 and 20 of Akt (Long et al., 2017;Yan et al., 2018).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Since aberrant Notch signaling is critical for T-cell acute lymphoblastic leukemia (T-ALL) and chronic lymphocytic leukemia (CLL), these tumors represent other potential application of HDAC3-selective inhibitors (Fig. 3).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“Akt1 is another non-histone target of HDAC3 mediated deacetylation (Long et al., 2017;Yan et al., 2018).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“The dynamics of H3K14 acetylation are important for the initiation of NER (Niida et al., 2018).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.5. HDAC3, the DNA Damage Response (DDR) and the genome stability
What the sources say
- Not checked yetcites Niida et al., 2018 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC8 catalyzes the deacetylation of SMC3, which is required for efficient recycling of the cohesin complex (Deardorff et al., 2012).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
- Not checked yetcites Deardorff et al., 2012 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Particularly critical is the deacetylation of SMAC3, which gives HDAC8 a critical and unique role in regulating cohesin function.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
- Not checked yetcites Deardorff et al., 2012 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“HDAC8 is frequently overexpressed in different tumor types (Lehmann et al., 2014;Moreno et al., 2010;Oehme et al., 2009).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In this way, HDAC8 inactivates TP53 by deacetylation.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Qi et al., 2015
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Hdac8 is highly expressed in long-term hematopoietic stem cells (LT-HSCs).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Hua et al., 2017 source
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“More generally, HDAC8 affects cell proliferation in different tumor types (Vannini et al., 2004).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Vannini et al., 2004 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“Dysfunction or alteration of HDAC8, as well as its targeting by specific inhibitors, could have a broader effect via control of cohesin dynamics (Dasgupta, Antony, Braithwaite, & Horsfield, 2016;Yamauchi et al., 2011).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
hedgedconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Depletion of HDAC3 (but not HDAC1/2 or 6) potently cooperates with these inhibitors to kill melanoma cells.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.5. HDAC3, the DNA Damage Response (DDR) and the genome stability
What the sources say
- Not checked yetcites Maertens et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Remarkably, the CM fusion does not interact with other class I members.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Qi et al., 2015
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“The dynamics of H3K14ac may be critical for the temporal recruitment of elements of the repair machinery (Nishimoto et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.5. HDAC3, the DNA Damage Response (DDR) and the genome stability
What the sources say
- Not checked yetcites Nishimoto et al., 2020 source
hedgedconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In AML, characterized by an inversion in chromosome 16, HDAC8 forms a complex with the fusion protein CBFB-SMMHC (CM) and TP53.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Qi et al., 2015
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Consequently, hematopoietic progenitor cells defective in Hdac8 are impaired for long-term serial repopulation activity in vivo (Hua et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Hua et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“HDAC8 deacetylates also nonhistone proteins such as TP53 and ERR-α (Deardorff et al., 2012;Qi et al., 2015;Wilson, Tremblay, Deblois, Sylvain-Drolet, & Giguère, 2010;Yan et al., 2013).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In breast cancer, TGF-β signaling correlates with stemness and metastasis via oligomerization of SMAD3/4.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Tang et al., 2020 source
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“The combination of quizartinib with the HDAC8 inhibitor 22d (Fig. 3), greatly reduces AML cell survival.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.3. HDAC8 and resistance to therapy
What the sources say
- Not checked yetcites Long et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Mechanistically, HDAC8 deacetylates c-Jun to enhance its transcriptional activity.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.3. HDAC8 and resistance to therapy
What the sources say
- Not checked yetcites Emmons et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC7 has also been reported to be modulated during senescence and its downregulation promotes senescence in fibroblasts (Warnon et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Warnon et al., 2021 source
hedgeddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“During RAS-induced senescence, artificial maintenance of HDAC4 levels can counteract cell cycle exit and reduce the expression of CDKN1A and CDKN2A, two important senescence markers.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Di Giorgio et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“This deacetylase, as well as other members of the class IIa family, are downregulated in various forms of senescence, including oncogene-induced senescence.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Di Giorgio et al., 2021
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Conversely, deprivation of HDAC4 halts proliferation and induces senescence in low-grade cancer cells.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Di Giorgio et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Here, HDAC8 is upregulated after treatment with quizartinib, an inhibitor of FMS-like receptor tyrosine kinase 3 (FLT3).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.3. HDAC8 and resistance to therapy
What the sources say
- Not checked yetcites Long et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“NAC1 (nucleus accumbens-associated protein-1) is deregulated in various cancers.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Zhang et al., 2017
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“The anti-senescence role of HDAC4 is explained by competition with AP1/P300 to enforce H3K27ac status at selected enhancers and super-enhancers that orchestrate the senescence program (Di Giorgio et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Di Giorgio et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In vertebrates, this subfamily is characterized by limited catalytic activity, mainly due to the replacement of a tyrosine (Y) with a histidine (H) residue in the enzymatic pocket (Lahm et al., 2007).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.1. Basic concepts
What the sources say
- Not checked yetcites Lahm et al., 2007 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“SIRT7, is an important antagonist of the TGF-β signaling, by promoting SMAD4 degradation.(Tang et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Tang et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Upregulation of HDAC8 during FLT3 therapy is mediated by TFs FOXP2 and FOXP3 (Long et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.3. HDAC8 and resistance to therapy
What the sources say
- Not checked yetcites Long et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“This resistance depends on the deacetylase activity of HDAC8 against TP53 described above.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.3. HDAC8 and resistance to therapy
What the sources say
- Not checked yetcites Long et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In addition to the role of HDAC3 in melanoma described above, HDAC8 supports another mechanism of therapy resistance.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.3. HDAC8 and resistance to therapy
What the sources say
- Not checked yetcites Emmons et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC7 has also been reported to be modulated during senescence and its downregulation promotes senescence in fibroblasts (Warnon et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Warnon et al., 2021 source
hedgedcorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In MM, a severe malignancy with poor survival, MIR145-3p promotes apoptosis by downregulating HDAC4.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.2. Class IIa HDACs and pro-oncogenic activities
What the sources say
- Not checked yetcites Wu et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Conversely, deprivation of HDAC4 halts proliferation and induces senescence in low-grade cancer cells.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Di Giorgio et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“The NAC1/HDAC4/HIF-1α axis is important for the regulation of glycolysis and hypoxic adaptation in tumor cells.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Zhang et al., 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“The cytoplasmic pool of HDAC4 has been reported to be involved in the control of autophagy and apoptosis (Zhang, Qi, Yin and Yang, 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.2. Class IIa HDACs and pro-oncogenic activities
What the sources say
- Not checked yetcites Zhang et al., 2019
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“This leads to reduced HIF-1α acetylation, which promotes its stabilization and transcriptional activity.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Zhang et al., 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Another important feature of these HDACs is the different levels of regulation, with 14-3-3dependent control of nuclear cytoplasmic shuttling (Fig. 2) playing an important role in various adaptive responses and during differentiation (Di Giorgio & Brancolini, 2016).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.1. Basic concepts
What the sources say
- Not checked yetcites Di Giorgio & Brancolini, 2016
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Therefore, HDAC4 may support the adaptive response of cells to hypoxia.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Zhang et al., 2017
hedgedconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“An important epigenetic role of class IIa in favouring the initial steps of the tumorigenic process was recently demonstrated for HDAC4.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Di Giorgio et al., 2021
boosteddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Moreover, concomitant treatment with a HDAC8 inhibitor (Fig. 3) and a BRAF inhibitor (PLX4720) restores efficacy in inhibiting tumor growth and melanoma phenotype in vivo.(Emmons et al., 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.3. HDAC8 and resistance to therapy
What the sources say
- Not checked yetcites Emmons et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“During RAS-induced senescence, artificial maintenance of HDAC4 levels can counteract cell cycle exit and reduce the expression of CDKN1A and CDKN2A, two important senescence markers.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Di Giorgio et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“SENEBLOC, a long noncoding RNA, blocks the induction of cellular senescence by inactivating CDKN1A.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Xu et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“As reported for other HDACs, HDAC11 expression is upregulated in multiple carcinomas compared to healthy counterparts (Deubzer et al., 2012;Gong, Zeng, Yi, & Wu, 2019;Liu, Wu, Jin, Chang, & Xu, 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Deubzer et al., 2012 source
- Not checked yetcites Gong, Zeng, Yi, & Wu, 2019
- Not checked yetcites Liu, Wu, Jin, Chang, & Xu, 2020
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Paradoxically, HDAC7 is required to maintain H3K27ac levels at these regulatory elements.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.7. The role of HDAC7 in breast cancer stem cells
What the sources say
- Not checked yetcites Caslini et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC1 and HDAC7 are necessary to maintain the properties of CSCs, and HDAC7 overexpression is sufficient to increase the CSC phenotype (Witt et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.7. The role of HDAC7 in breast cancer stem cells
What the sources say
- Not checked yetcites Witt et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“It can remove long chain fatty-acyl groups from H3K9 peptides.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.1. Basic concepts
What the sources say
- Not checked yetcites Cao et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC1 and HDAC7 are necessary to maintain the properties of CSCs, and HDAC7 overexpression is sufficient to increase the CSC phenotype (Witt et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.7. The role of HDAC7 in breast cancer stem cells
What the sources say
- Not checked yetcites Witt et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In the past few years HDAC7 has emerged as a regulator of cancer stem cells (CSCs).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.7. The role of HDAC7 in breast cancer stem cells
What the sources say
- Not checked yetcites Witt et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“Moreover, in a model of RAS-induced transformation of immortalised mammary epithelial cells, HDAC7 is required for invasion and proliferation of transformed cells.(Cutano et al., 2019;Di Giorgio et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.7. The role of HDAC7 in breast cancer stem cells
What the sources say
- Not checked yetcites Cutano et al., 2019 source
- Not checked yetcites Di Giorgio et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC4 is also associated with de novo lipid biosynthesis.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Zhao et al., 2021 source
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“HDAC7 is required for sculpturing the microenvironment by suppressing the expression of cytokines and other signalling regulators (Fig. 7).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.7. The role of HDAC7 in breast cancer stem cells
What the sources say
- Not checked yetcites Cutano et al., 2019 source
- Not checked yetcites Di Giorgio et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Altogether, these findings provide new insights into the epigenetic basis of altered mitochondrial metabolism in renal clear cell carcinoma (Nam et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Nam et al., 2021 source
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC7 controls the deposition of H3K27ac at transcription start sites (TSS) and super-enhancers.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.7. The role of HDAC7 in breast cancer stem cells
What the sources say
- Not checked yetcites Caslini et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“As mentioned earlier, defatty-acylase activity has also been observed with other HDACs such as HDAC8, but HDAC11 is 10,000 times more effective (Cao et al., 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.1. Basic concepts
What the sources say
- Not checked yetcites Cao et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“Interestingly, HDAC7 levels are downregulated after treatment with pan-HDACIs (Minisini et al., 2022;Witt et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.7. The role of HDAC7 in breast cancer stem cells
What the sources say
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In the normal breast, glucose controls lipid biosynthesis by regulating nuclear import of SerRS via an acetylation switch.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Zhao et al., 2021 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC4 and HDAC5 are the deacetylases that control the acetylation and nuclear translocation of SerRS, thus boosting lipid metabolism and cell growth (Zhao et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Zhao et al., 2021 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In breast and ovarian cancers, HDAC1 and HDAC7 are specifically overexpressed in CSCs compared to non-stem-tumourcells.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.7. The role of HDAC7 in breast cancer stem cells
What the sources say
- Not checked yetcites Witt et al., 2017 source
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Instead, HDAC11 shows strong defatty-acylase activity.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.1. Basic concepts
What the sources say
- Not checked yetcites Cao et al., 2019 source
boosted- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“A decrease in AMPK affects EMT and metastasis in vivo.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Feng et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC5-depleted cells establish a coping mechanism by reprogramming metabolic pathways to glucose and glutamine.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Hendrick et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In a chemically induced model of liver carcinogenesis in mice, Hdac11 is essential for cancer stem cell maintenance.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Bi et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“TGF-β uses HDAC7 as corepressor to switch off the expression of TCA enzymes.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Nam et al., 2021 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“An oncogenic dependence on HDAC11 has also been observed in HCC.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Bi et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
None of the sources cited for this claim have been checked yet.
In the paper
“To add further mystery to HDAC11, mice Hdac11 -/-show no significant abnormalities (Huang et al., 2017;Sun et al., 2018;Yue et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.1. Basic concepts
What the sources say
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“The upregulation of HK2 in cells in which AMPK is downregulated depends on HDAC4 and HDAC5 in an undefined manner (Feng et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Feng et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“It has been known for several years that HDAC11 negatively controls IL-10 transcriptional activity in antigen-presenting cells and regulates immune tolerance (Villagra et al., 2009).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.3. HDAC11 and the immune system
What the sources say
- Not checked yetcites Villagra et al., 2009 source
boosteddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“This study is another example of the ambivalent behavior of HDACs in cancer and another indication of adverse effects of their selective targeting in a therapeutic perspective.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Leslie et al., 2019 source
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Hdac11 binds to promoters and represses transcription of TFs Tbet and Eomes, important regulators of inflammatory cytokines and effector molecules production (Woods et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.3. HDAC11 and the immune system
What the sources say
- Not checked yetcites Woods et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Hdac11 binds to promoters and represses transcription of TFs Tbet and Eomes, important regulators of inflammatory cytokines and effector molecules production (Woods et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.3. HDAC11 and the immune system
What the sources say
- Not checked yetcites Woods et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In a B-cell lymphoma model, mice receiving T cells from Hdac11 KO donors show delayed tumor growth (Woods et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.3. HDAC11 and the immune system
What the sources say
- Not checked yetcites Woods et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC11 is important for tumorigenesis and growth in lymph nodes, but its downregulation in the lymph nodes leads to increased migration and colonization of distal sites, resulting in distal metastasis.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Leslie et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In high-fat fed mice, deletion of Hdac11 prevents obesity, insulin resistance and glucose intolerance by increasing energy expenditure through improved thermogenic capacity (Sun et al., 2018).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Sun et al., 2018 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“HDAC11 is also involved in tumors of the hematopoietic system.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Yue et al., 2020 source
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In myeloproliferative neoplasms (MPN), selective HDAC11 inhibitors regulate the expression of mitotic genes, causing cell cycle arrest (Yue et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Yue et al., 2020 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Hdac11 binds to promoters and represses transcription of TFs Tbet and Eomes, important regulators of inflammatory cytokines and effector molecules production (Woods et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.3. HDAC11 and the immune system
What the sources say
- Not checked yetcites Woods et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“While HDAC4 is primarily thought to have a tumor-promoting role, HDAC5 and HDAC7 are associated with both pro-tumorigenic and tumor suppressive functions.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“These activities require the interaction of Hdac11 with the epigenetic reader BRD2 (Bagchi et al., 2018).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Bagchi et al., 2018 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Hdac11 is involved in the control of Foxp3 acetylation, and its absence in Foxp3+ Treg cells results in enhanced suppressive activity due to the increased expression of some T-reg-associated genes such as Tgf-β and Foxp3 (Huang et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.3. HDAC11 and the immune system
What the sources say
- Not checked yetcites Huang et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Hdac11 is involved in the control of Foxp3 acetylation, and its absence in Foxp3+ Treg cells results in enhanced suppressive activity due to the increased expression of some T-reg-associated genes such as Tgf-β and Foxp3 (Huang et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.3. HDAC11 and the immune system
What the sources say
- Not checked yetcites Huang et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“The effect of HDAC11 on cell proliferation depends on the repression of cell cycle inhibitors E2F7 and E2F8 (Leslie et al., 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Leslie et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In MM, HDAC11 regulates cell proliferation and survival by controlling IRF4 acetylation.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Mostofa et al., 2021 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Hdac11 is involved in the control of Foxp3 acetylation, and its absence in Foxp3+ Treg cells results in enhanced suppressive activity due to the increased expression of some T-reg-associated genes such as Tgf-β and Foxp3 (Huang et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.3. HDAC11 and the immune system
What the sources say
- Not checked yetcites Huang et al., 2017 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“The role of Hdac11 in regulating T cell tolerance is confirmed by its influence on anti-tumor effect of the immune system.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.3. HDAC11 and the immune system
boosteddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“In contrast, these mice reduce white adipose tissue deposition.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Sun et al., 2018 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Hdac11 controls the expression of the tumor suppressor Lkb1 by regulating H3K9 acetylation at its promoter.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Bi et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“Through de-fatty acid acylation of SHMT2a, HDAC11 may downregulate the immune response associated with type I IFN.(Cao et al., 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.3. HDAC11 and the immune system
What the sources say
- Not checked yetcites Cao et al., 2019 source
hedgedconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Consequently, mice receiving T cells from Hdac11 KO donors rapidly develop graft-versus-host disease.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.3. HDAC11 and the immune system
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
In the paper
“As a result, treatment of MM cells with elevenostan, a hydroxamic acid derivative and putative selective HDAC11 inhibitor (Fig. 3), induces apoptosis similar to downregulation of HDAC11.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Mostofa et al., 2021 source
hedgeddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
- Probably not a substantial claim. 19
- It may state two separate claims as one. 80
In the paper
“Status of 725 clinical trials for the use of HDACIs in Cancer Terminated (137) Active not recruiting (60) Recruiting (80) Completed (351) Unknown (50) Withdrawn (32) Phase 1 (424) Phase 2 (387) Phase 3 (30) Phase 4 (3)”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.1. HDAC1/2, typical enhancers and super-enhancers
What the sources say
- Not checked yetcites https://www.clinicaltrials.gov
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
In the paper
“HDAC2 can affect the expression of a subset of genes regulated by EZH2/ARID1A, and SAHA/vorinostat can increase survival in mice with ARID1A-mutated cancer (Fukumoto et al., 2018).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.3. HDAC1/2 and the metastatic process: hopes for therapies
What the sources say
- Not checked yetcites Fukumoto et al., 2018
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Acetylation at this residue promotes chromatin compaction through greater interaction with nuclear histones and recruitment of HP1 (heterochromatin protein 1).A condition that makes cells more susceptible to death in response to genotoxic agents, possibly due to an increased amount of DNA damage (Li et al., 2018).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.5. HDAC1/2, the DNA damage response (DDR) and the genome stability
What the sources say
- Not checked yetcites Li et al., 2018
hedgeddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Here, it was proposed that the deacetylase activities of HDAC1/2 act as limiting factors to concentrate the classical NHEJ complexes at the cleaved site by preventing their spread along the chromosome (Rother et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.5. HDAC1/2, the DNA damage response (DDR) and the genome stability
What the sources say
- Not checked yetcites Rother et al., 2020
hedgeddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“There are two main reasons that make HDACs promising targets for cancer therapy: i) their activities need to be hijacked to maintain the transformation state; ii) they are directly responsible for transformation events.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 1. Introduction
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: unclear — It is unclear why the paper says it holds.
It may state two separate claims as one.
- Rests on an assumption: HDAC activities need to be hijacked to maintain the transformation state.
- Rests on an assumption: HDACs are directly responsible for transformation events.
In the paper
“Similarly, in colon cancer, miR-500a-5p targeting the 3' end of HDAC2 mRNA is downregulated during cancer progression and HDAC2 is necessary to maintain proliferation and invasion of neoplastic cells (Tang et al., 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.3. HDAC1/2 and the metastatic process: hopes for therapies
What the sources say
- Not checked yetcites Tang et al., 2019
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Although there are several aspects of this mechanism that deserve further validation, knockdown of HDAC1/2 is sufficient to increase acetylation of H3K9/14 at the SOX11 promoter and increase its expression.(Mohanty et al., 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > HDAC3-SMRT-HDAC4 complex HDAC4
What the sources say
- Not checked yetcites Mohanty et al., 2019
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Although Sall4 is required for primary tumor growth, loss of Sall4 results in increased metastatic burden.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > HDAC3-SMRT-HDAC4 complex HDAC4
What the sources say
- Not checked yetcites Diener et al., 2021 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
None of the sources cited for this claim have been checked yet.
In the paper
“The catalytic activity of HDAC1 is modulated by serine phosphorylation (Pflum, Tong, Lane, & Schreiber, 2001) and cancer cells can sustain it (Citro, Miccolo, Meloni, & Chiocca, 2015).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.4. HDAC1/2 as tumor suppressors
What the sources say
- Not checked yetcites Pflum, Tong, Lane, & Schreiber, 2001
- Not checked yetcites Citro, Miccolo, Meloni, & Chiocca, 2015
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Via LSD1/KDM1A (lysine-specific demethylase 1), it catalyzes the demethylation of mono-and dimethylated lysine 4 of histone H3, while via HDAC1/2 it can deacetylate H3K27ac (Shi et al., 2004).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.1. HDAC1/2, typical enhancers and super-enhancers
What the sources say
- Not checked yetcites Shi et al., 2004 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“During the cell cycle, PACS-1 can accumulate in the nucleus, where it maintains genome stability by buffering replication stress.The action of PACS-1 is important in protecting HDAC2 and HDAC3 from degradation in replication forks and thus can support the establishment of the desired chromatin microenvironment (Mani et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.5. HDAC1/2, the DNA damage response (DDR) and the genome stability
What the sources say
- Not checked yetcites Mani et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Finally, loss of ARID1A is associated with a lack of recruitment of HDAC1 and an increase in histone H4 acetylation in regulated genomic regions (Nagarajan et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.3. HDAC1/2 and the metastatic process: hopes for therapies
What the sources say
- Not checked yetcites Nagarajan et al., 2020
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Here, the SIN3A-HDAC1/2 complex silences BMP6 expression and promotes metastatic spread and tumor growth by suppressing BMP6-activated SMAD5 signaling (Min et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.3. HDAC1/2 and the metastatic process: hopes for therapies
What the sources say
- Not checked yetcites Min et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“In particular, Tyr72 plays an important role in regulating HDAC1 stability, and can be phosphorylated by EGFR.This phosphorylation impinges the anti-apoptotic role of HDAC1 and the repression of the proapoptotic BH3-only family member BIM1 (Bahl et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.4. HDAC1/2 as tumor suppressors
What the sources say
- Not checked yetcites Bahl et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Direct dysfunction of these HDACs is frequently observed in the form of expression levels in various tumors, whereas mutations are rare (http:// www.cbioportal.org).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4. HDAC1 and HDAC2
What the sources say
- Not checked yetcites http:// www.cbioportal.org
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“HDAC1 interacts with ARID1A and tamoxifen may promote recruitment of HDAC1 to ER complexes to mediate a repressive effect (Papachristou et al., 2018).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.3. HDAC1/2 and the metastatic process: hopes for therapies
What the sources say
- Not checked yetcites Papachristou et al., 2018
hedgedconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“The TF Sall4, also known as stem cell factor (Zhan et al., 2006), is strongly upregulated in hyperplastic, melanoma-prone murine melanocytes, where it sustains cell proliferation (Diener et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > HDAC3-SMRT-HDAC4 complex HDAC4
What the sources say
- Not checked yetcites Diener et al., 2021 source
boosteddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“These two HDACs are highly homologous (> 80% aa identity), often fully interchangeable, and are recruited to various multiprotein complexes involved in epigenetic control of gene expression (Millard et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4. HDAC1 and HDAC2
What the sources say
- Not checked yetcites Millard et al., 2017 source
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
None of the sources cited for this claim have been checked yet.
In the paper
“Recently, inactivating mutations in this gene have been reported in treatment-resistant tumours and metastases (Yates et al., 2017) as well as in ER+ breast cancer (Pereira et al., 2016).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.3. HDAC1/2 and the metastatic process: hopes for therapies
What the sources say
- Not checked yetcites Yates et al., 2017
- Not checked yetcites Pereira et al., 2016
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“The median overall survival of 13.4 months achieved was longer than the ten-month benchmark survival determined from historical data (Ny et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Ny et al., 2021
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Collectively, these observations suggest that cancer cells utilize class I HDACs to create an immune-repressive environment and orchestrate immune cells activities.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
hedgeddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“HDAC2 is modulated by CSF1 signaling and suppresses granulocytic chemokine expression in carcinoma-associated fibroblasts, limiting MDSC infiltration.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Kumar et al., 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“In patients with metastatic clear cell renal cell carcinoma, entinostat in combination with high dose of IL2 led to downregulation of Fox3p expression and a reduction in the number of Tregs.An effect that enhanced anti-tumor immunity and showed promising clinical activity (Pili et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Pili et al., 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Benzamides and in particular MS-275/ entinostat (Fig. 3) is considered a specific class I inhibitor and shows some selectivity for HDAC1/2/3 over HDAC8 (Hu et al., 2003).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 3.1. Structural features and rational of targeting
What the sources say
- Not checked yetcites Hu et al., 2003
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“These partners are fundamental for the stabilization of HDAC3 and the maturation of catalytic activity (Emmett & Lazar, 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.1. Basic concepts
What the sources say
- Not checked yetcites Emmett & Lazar, 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“After screening with 107 different compounds, entinostat was isolated because it abrogated tumor growth, after perturbing the transcriptome in GEP-NET (Alvarez et al., 2018).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Alvarez et al., 2018
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“This switch in partner binding results in an epigenetic reset that impairs the plasma cell differentiation program and instead impinges an immature memory B cell fate.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.1. Basic concepts
What the sources say
- Not checked yetcites Venturutti et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Accordingly, the KO of HDAC1 and/or HDAC2 in mouse ES cells results in lagging chromosomes at the anaphase, micronuclei formation, and monopolar spindles (Jamaladdin et al., 2014).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.5. HDAC1/2, the DNA damage response (DDR) and the genome stability
What the sources say
- Not checked yetcites Jamaladdin et al., 2014
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“A reprogramming activity towards an immunepermissive tumor microenvironment was confirmed in another study, with beneficial therapeutic effects (Hicks et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Hicks et al., 2021
boosteddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Entinostat also potentiates immunotherapy elicited by an anticancer vaccine designed on human carcinoembryonic antigen.In the presence of entinostat, the tumor microenvironment is marked by increased inflammation, enhanced infiltration of activated CD8+ T cells with maximal granzyme B, T-cell responses to different tumorassociated antigens, increased IFNγ and decreased of regulatory T-cells (Hicks”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.6. Class I HDACs, the example of entinostat and the immunotherapy
What the sources say
- Not checked yetcites Hicks et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“These two proteins contain WD repeats involved in histone recognition and interaction with the ubiquitylation machinery (Yoon et al., 2003).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.1. Basic concepts
What the sources say
- Not checked yetcites Yoon et al., 2003
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“HDAC3 provides H3K27 deacetylase activity at the RUNX2 promoter, where it is recruited by binding with CBX4 (Wang et al., 2016).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.2. HDAC3 in cancer
What the sources say
- Not checked yetcites Wang et al., 2016
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Therefore, HDAC3 can control DNMT1 levels in two different ways: i) directly by deacetylating it and ii) indirectly by stabilizing MYC.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“In addition, DNMT1 transcription is stimulated by MYC, whose stability is reduced after inhibition by HDAC3.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Harada et al., 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Interestingly, some catalytically independent activities of Hdac3 were observed in liver, a feature common to class IIa HDACs (Sun et al., 2013).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.1. Basic concepts
What the sources say
- Not checked yetcites Sun et al., 2013
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it.
In the paper
“HDAC3, which promotes deacetylation of FoxO3 and downregulation of Dicer, aids metastatic potential (Zhang et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Zhang et al., 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“In the liver Hdac3 exerts a non-redundant deacetylase activity against H3K9ac, which is accompanied by an increase in H3K9me3 (Ji et al., 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.5. HDAC3, the DNA Damage Response (DDR) and the genome stability
What the sources say
- Not checked yetcites Ji et al., 2019
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“PD-1 is generally expressed on tumor-infiltrating T cells, while its ligand (PD-L1) is often highly expressed on tumor to inhibit tumor-infiltrating T cell activation and cytotoxicity.(Constantinidou, Alifieris, & Trafalis, 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Not checked yetcites Constantinidou et al., 2019
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“This genomic instability activates oncogenic signalling pathways and impairs p53 activities, leading to early onset of spontaneous hepatocellular carcinoma in Hdac3 -/-mice.(Bhaskara et al., 2010).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.5. HDAC3, the DNA Damage Response (DDR) and the genome stability
What the sources say
- Not checked yetcites Bhaskara et al., 2010
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“HDAC3 is not only involved in the repression of CREBBPtarget genes, but also controls the interferon response and expression of antigen presentation genes, thus restoring the immune surveillance.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Not checked yetcites Mondello et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“The Speckle-type POZ protein (SPOP), the substrate-binding adaptor of the CULLIN3-RBX1 E3 ubiquitin ligase complex, is the most frequently mutated gene in human primary prostate cancer.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Blattner et al., 2017
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it.
In the paper
“The efficiency of both HR and NHEJ repair pathways is reduced in the absence of Hdac3, and in these null cells the number of chromosome breaks and gaps observed in mitosis is increased.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.5. HDAC3, the DNA Damage Response (DDR) and the genome stability
What the sources say
- Not checked yetcites Bhaskara et al., 2010
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Importantly, the HDAC3-specific inhibitor RGFP966 (Fig. 3) impairs the growth of B-cell lymphomas in which PD-L1 was deleted, but not that of WT cells.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Not checked yetcites Deng et al., 2019
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Regulation of H3K9ac/H3K9me3 turnover is one of the first steps in the DSB repair pathway and allows binding of HAT Tip60 to DSB foci.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.5. HDAC3, the DNA Damage Response (DDR) and the genome stability
What the sources say
- Not checked yetcites Mir et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Mechanistically, HDAC3 interacts with AKT at the plasma membrane and facilitates polyubiquitylation of the lysine-63-chain and phosphorylation of AKT, by deacetylation.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Yan et al., 2018
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Certainly, this dual epigenetic targeting may influence additional antiproliferative mechanisms and further enhance antitumor surveillance by the immune system (Chiappinelli et al., 2015).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.3. HDAC3 and the epigenetic-independent activities
What the sources say
- Not checked yetcites Chiappinelli et al., 2015 source
hedgedconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“HDAC3, like HDAC1/2, can control this acetylation, and its depletion impairs DNA repair, leading to CDP accumulation.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.5. HDAC3, the DNA Damage Response (DDR) and the genome stability
What the sources say
- Not checked yetcites Nishimoto et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Practically, HDAC3 inhibition is sufficient to restore the capacity of tumor-infiltrating lymphocytes to kill DLBCL cells in a major histocompatibility complex (MHC) class I and II dependent manner, and to synergize with PD-L1 blocking antibodies (Mondello et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
What the sources say
- Not checked yetcites Mondello et al., 2020
boosteddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“HDAC8 catalyzes the deacetylation of histone substrates (H3/H4) with an efficiency that can be influenced by distal protein-protein interactions or by acetyllysine chain accessibility (Castañeda et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
- Not checked yetcites Castañeda et al., 2017
plainconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it.
None of the sources cited for this claim have been checked yet.
In the paper
“This complex is important for the spatial organization of the genome and the segregation of chromosomes and influences several genome-related functions, from gene expression to DNA repair (Broughm et al., 2012;Haarhuis, Elbatsh, & Rowland, 2014;Singh, McKinney and Gerton, 2020;Lee, Sengupta, Villagra, Rezai-Zadeh and Seto, 2006).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
- Not checked yetcites Broughm et al., 2012
- Not checked yetcites Haarhuis et al., 2014 source
- Not checked yetcites Singh et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
In the paper
“Patients suffering for this genetic disorder are characterized by congenital anomalies which consist of distinctive facial features, upper limb abnormalities, intellectual disability, and other symptoms (Dowsett et al., 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
- Not checked yetcites Dowsett et al., 2019
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
In the paper
“HDACIs can repress the binding between HDAC8 and Yin Yang 1 (YY1), restoring the acetylation of YY1 TF that causes the suppression of mutant TP53 transcription in triple negative breast cancer (Wang et al., 2016).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Wang et al., 2016
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Accordingly, the blockade of HDAC8 by a specific inhibitor, (PCI-34051, Fig. 3), decreases cell growth and causes apoptosis in T-cell derived tumor lines (Balasubramanian et al., 2008).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Balasubramanian et al., 2008 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“In neuroblastoma, HDAC8 correlates with poor overall survival, and its knockout leads to increased cell differentiation and cell cycle arrest (Oehme et al. , 2009).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Oehme et al., 2009
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
None of the sources cited for this claim have been checked yet.
In the paper
“The HDAC8 gene is located on the X chromosome, near the X inactivation center, and encodes a 377 amino acid long protein (Hu et al., 2000;Lee, Sengupta, Villagra, Rezai-Zadeh, & Seto, 2006;Somoza et al., 2004;Van den Wyngaert et al., 2000).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
- Not checked yetcites Hu et al., 2000
- Not checked yetcites Lee et al., 2006
- Not checked yetcites Somoza et al., 2004 source
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
In the paper
“Missense mutations in HDAC8 are responsible for Cornelia de Lange Syndrome (CdLS) and associated spectrum disorders.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
- Not checked yetcites Dowsett et al., 2019
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it.
In the paper
“Importantly, deletion of HDAC8 significantly reduces the incidence of AML and treatment with a HDAC8 inhibitor increases the sensitivity of AML cells to chemotherapy in both mice and patients.(Qi et al., 2015).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Qi et al., 2015
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
None of the sources cited for this claim have been checked yet.
In the paper
“The HDAC8 protein is localized primarily in the nucleus, where it acts as a transcriptional repressor and shows a rather ubiquitous expression (Buggy et al., 2000;Hu et al., 2000).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
- Not checked yetcites Buggy et al., 2000 source
- Not checked yetcites Hu et al., 2000
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
In the paper
“Here, Hdac8 interacts with Tp53 and Hdac8-deficient LT-HSCs exhibit hyperacetylation and activation of TP53, causing increased apoptosis under various stress conditions.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Hua et al., 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Interestingly, BRAF/MEK inhibitors in combination with entinostat (a preferred HDAC1/2/3 inhibitor) synergize to induce DNA damage and suppress expression of DDR genes involved in both HR and NHEJ (Maertens et al., 2019).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.5. HDAC3, the DNA Damage Response (DDR) and the genome stability
What the sources say
- Not checked yetcites Maertens et al., 2019 source
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
None of the sources cited for this claim have been checked yet.
In the paper
“In addition to dysfunctions in HDAC8, CdLS is caused by mutations in genes encoding the cohesion structural proteins SMC1A, SMC3 and RAD21 or the cohesin assembly factor NIBPL (Avagliano et al., 2020;Watrin, Kaiser, & Wendt, 2016).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
- Not checked yetcites Avagliano et al., 2020
- Not checked yetcites Watrin et al., 2016
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it.
In the paper
“Another element of variability that should be considered is the presence of somatic mutations of the cohesin subunits in a variety of human cancers (Hill, Kim, & Waldman, 2016).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
- Not checked yetcites Hill et al., 2016
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it.
In the paper
“HDAC8 has the shorter carboxy-terminal tail, which is phosphorylated by PKA and can utilize either Zn 2+ or Fe 2+ for catalysis (Gantt, Gattis, & Fierke, 2006).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.1. Basic concepts
What the sources say
- Not checked yetcites Gantt et al., 2006
plain- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
In the paper
“In this scenario HDAC8 is an important player since its inhibition suppresses cancer metastasis and chemotherapy resistance.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Tang et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“On the other hand, simultaneous treatment with both inhibitors increases TP53 acetylation and activity.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.3. HDAC8 and resistance to therapy
What the sources say
- Not checked yetcites Long et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Conversely, silencing of HDAC4 leads to upregulation of the pro-apoptotic BH3-only protein BCL2L11/BIM and causes inactivation of mTORC1, two actions that lead to alterations in autophagy flux and cell death (Wu et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.2. Class IIa HDACs and pro-oncogenic activities
What the sources say
- Not checked yetcites Wu et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“An epigenetic regulation previously observed for others class IIa and possibly mediated by MEF2 TFs (Clocchiatti et al., 2015).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Clocchiatti et al., 2015
hedgedconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Although several studies have reported a role of class IIa HDACs in cancer, they cannot be unambiguously classified as tumor suppressors or oncogenes, and their contribution to cancer development might vary from context to context.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.1. Basic concepts
hedged- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“HDAC8 can bind the SMAD3/4 complex and supplies its epigenetic influence, by creating a repressive environment at the SIRT7 promoter.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.2. HDAC8 and cancer
What the sources say
- Not checked yetcites Tang et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“NAC1 can bind HDAC4 and impedes phosphorylation of deacetylase, which prevents nuclear export and causes nuclear accumulation.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Zhang et al., 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“The anti-BRAF/MEK therapy can promote expression of HDAC8, which in turn suppresses expression of the pro-apoptotic gene BIM and causes resistance in melanoma cell lines.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.3. HDAC8 and resistance to therapy
What the sources say
- Not checked yetcites Emmons et al., 2019
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Indeed, their interaction increases after treatment with quizartinib and leads to inactivation of TP53, which allows leukemia cell survival.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.3. HDAC8 and resistance to therapy
What the sources say
- Not checked yetcites Long et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
None of the sources cited for this claim have been checked yet.
In the paper
“It has been suggested that class IIa HDACs may act as readers of acetylated lysine, directing other HDAC subtypes (Fig. 4) to complete the deacetylation steps (Brancolini, Di Giorgio, Formisano, & Gagliano, 2021;Di Giorgio & Brancolini, 2016).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.1. Basic concepts
What the sources say
- Not checked yetcites Brancolini et al., 2021
- Not checked yetcites Di Giorgio & Brancolini, 2016
hedgedconditional- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: passes — The paper gives a reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it.
In the paper
“This effect is achieved by two distinct strategies: i) by favouring MDM2-TP53 interaction, which reduces transcriptional output at the CDKN1A promoter, ii) by controlling HDAC5 levels, which affect H3K9 and H4K5 acetylation levels at the proximal promoter of CDKN1A (Xu et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Xu et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“This effect is achieved by two distinct strategies: i) by favouring MDM2-TP53 interaction, which reduces transcriptional output at the CDKN1A promoter, ii) by controlling HDAC5 levels, which affect H3K9 and H4K5 acetylation levels at the proximal promoter of CDKN1A (Xu et al., 2020).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Xu et al., 2020
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Mass spectrometry-based phosphoproteomic analysis revealed that HDAC8 regulates multiple signaling pathways, of which the MAPK pathway is important for resistance.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 6.3. HDAC8 and resistance to therapy
What the sources say
- Not checked yetcites Emmons et al., 2019
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“In contrast, in breast cancer cells, SerRS acetylation and nuclear translocation are strongly inhibited.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Zhao et al., 2021
boosted- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Functional studies have shown that silencing of HDAC11 blocks the cell cycle (mainly in G2/M phase) and induces abnormal mitotic spindle formation and cell death.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Thole et al., 2017
boosteddirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Moreover, pharmacological inhibition of TGF-β can restore TCA cycle enzymes expression and reduce tumour growth in vivo.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Nam et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“In renal clear cell carcinoma loss of TCA cycle enzymes expression marks the metastatic tissues and is a peculiar feature of this type of tumour.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Nam et al., 2021
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“This reduction correlates with and depends on the downregulation of the co-activator PGC-1α.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Nam et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“However, when glucose and glutamine supply is disrupted in HDAC5inhibited cancer cells, apoptotic cell death significantly increases and tumour growth is reduced in vivo (Hendrick et al., 2017).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.5. Class IIa HDACs and the regulation of senescence
What the sources say
- Not checked yetcites Hendrick et al., 2017
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“HDAC7 binds near TSS and to SEs of oncogenes and contributes to their transcriptional regulation.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 7.7. The role of HDAC7 in breast cancer stem cells
What the sources say
- Not checked yetcites Caslini et al., 2019
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“Elevenostan exhibits activity in the nanomolar range and acts synergistically with bortezomib, an anti-myeloma drug, in inducing cell death (Mostofa et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Mostofa et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: unclear — It is unclear whether the paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“HDAC11 is important for tumorigenesis and growth in lymph nodes, but its downregulation in the lymph nodes leads to increased migration and colonization of distal sites, resulting in distal metastasis.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Leslie et al., 2019
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“While HDAC4 is primarily thought to have a tumor-promoting role, HDAC5 and HDAC7 are associated with both pro-tumorigenic and tumor suppressive functions.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
hedgedcorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: fails — The paper may give no reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it. The paper may give no reason why it holds.
In the paper
“Repression of Lkb1 thereby affects Ampk activation and glycolysis (Bi et al., 2021).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Bi et al., 2021
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
In the paper
“This gene is associated with poor diseasefree survival in breast cancer and it can affect cancer proliferation, angiogenesis, and invasiveness (Zhang et al., 2014).”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
What the sources say
- Not checked yetcites Zhang et al., 2014
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: passes — The paper’s conclusions depend on it.
- Based: passes — The paper gives a reason why it holds.
It may state two separate claims as one.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“HDAC7 also plays an important role in maintaining stemness properties.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: fails — The paper may give no reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it. The paper may give no reason why it holds.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Class IIa HDACs regulate proliferation, cell cycle, metabolism, senescence, and invasion/metastasis in cancer cells.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
plaindirect- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: fails — The paper may give no reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it. The paper may give no reason why it holds. It may state two separate claims as one.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“HDAC9 is involved in invasion/metastasis, proliferation and response to treatments.”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 8.2. HDAC11 and cancer
plaincorrelational- Asserted: passes — The authors put it forward as true.
- Checkable: passes — It can be checked against evidence.
- Load-bearing: fails — The paper’s conclusions may not depend on it.
- Based: fails — The paper may give no reason why it holds.
Probably not a substantial claim. The paper’s conclusions may not depend on it. The paper may give no reason why it holds. It may state two separate claims as one.
The paper relies on this without support.
The epigenome of cancer cells can in principle be reversed.
“Unlike genomic mutations, the epigenome of cancer cells can in principle be reversed.”
The paper relies on this without support.
Transcriptional control is a key function in cancer and is controlled by rearrangement of the epigenome.
“Transcriptional control is a key function in this context and is controlled by the rearrangement of the epigenome.”
The paper relies on this without support.
DNA mutations must hijack cellular functions to sustain the spread of mutant genomes.
“Mutations of DNA are the drivers of the tumorigenic process, but mutations must be able to hijack cellular functions to sustain the spread of mutant genomes.”
The paper relies on this without support.
The complexity of the epigenetic machinery has frustrated enthusiasm for epigenetic drugs.
“Unfortunately, the complexity of the epigenetic machinery has frustrated this enthusiasm.”
The paper relies on this without support.
HDAC activities need to be hijacked to maintain the transformation state.
“i) their activities need to be hijacked to maintain the transformation state”
The paper relies on this without support.
HDACs are directly responsible for transformation events.
“ii) they are directly responsible for transformation events.”
The paper relies on this without support.
HDAC5 acts as a senescence antagonist.
“Similarly, HDAC5 may also act as a senescence antagonist.”
The paper relies on this without support.
HDAC1 and HDAC3 are involved in maintaining the high expression of HDAC7.
“HDAC1 and HDAC3 appear to be involved in maintaining the high expression of HDAC7 in an undetermined manner.”
The paper relies on this without support.
HDACs are frequently implicated in cancer.
“Although frequently implicated in cancer, they do not always involve epigenetic targets.”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“Histone modifications are dynamically regulated by coordinated enzyme systems commonly referred to as “writers,” “erasers,” and “readers,” which respectively deposit, remove, or recognize specific epigenetic marks (Kelly et al., 2018; Brancolini et al., 2022).”
From Histone modifications and depression: epigenetic mechanisms, therapeutic targets, and translational outlook (2026) · cites this paper as Brancolini et al., 2022
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
Rated minor: it would not touch a result — a value no result rests on, a p-value that stays on the same side of the significance level, or a conflict that is clerical, resolved elsewhere in the paper, or outside its own findings.
In the paper
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 5.4. HDAC3 and the immunotherapy
“The use of BRD4097 (Fig. 3), a new HDAC3selective inhibitor,”
§ HDACs and the epigenetic plasticity of cancer cells: Target the complexity > 4.3. HDAC1/2 and the metastatic process: hopes for therapies
“BRD4097 HDAC1 HDAC2 HDAC3 HDAC8”
Citations
Cites
Safety, activity, and immune correlates of anti–PD-1 antibody in cancer
Topalian, S. L., Hodi, F. S., Brahmer, J. R., Gettinger, S. N., Smith, D. C., McDermott, D. F., Powderly, J. D., Carvajal, R. D., Sosman, J. A., Atkins, M. B., et al. (2012) · New England Journal of Medicine · doi:10.1056/nejmoa1200690 · Cited by 12,628
Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
Shi, Y., Lan, F., Matson, C., Mulligan, P., Whetstine, J. R., Cole, P. A., Casero, R. A., & Shi, Y. (2004) · Cell · doi:10.1016/j.cell.2004.12.012 · Cited by 4,051
Regulatory T cells: mechanisms of differentiation and function
Josefowicz, S. Z., Lu, L.-F., & Rudensky, A. Y. (2012) · Annual Review of Immunology · doi:10.1146/annurev.immunol.25.022106.141623 · Cited by 2,866
Chiappinelli, K. B., Strissel, P. L., Desrichard, A., Li, H., Henke, C., Akman, B., Hein, A., Rote, N. S., Cope, L. M., Snyder, A., et al. (2015) · Cell · doi:10.1016/j.cell.2015.07.011 · Cited by 2,022
Molecular therapies and precision medicine for hepatocellular carcinoma
Llovet, J. M., Montal, R., Sia, D., & Finn, R. S. (2018) · Nature Reviews Clinical Oncology · doi:10.1038/s41571-018-0073-4 · Cited by 1,965
Pre-metastatic niches: organ-specific homes for metastases
Peinado, H., Zhang, H., Matei, I. R., Costa-Silva, B., Hoshino, A., Rodrigues, G., Psaila, B., Kaplan, R. N., Bromberg, J. F., Kang, Y., et al. (2017) · Nature Reviews Cancer · doi:10.1038/nrc.2017.6 · Cited by 1,889
A Mammalian Histone Deacetylase Related to the Yeast Transcriptional Regulator Rpd3p
Taunton, J., Hassig, C. A., & Schreiber, S. L. (1996) · Science · doi:10.1126/science.272.5260.408 · Cited by 1,829
Pereira, B., Chin, S., Rueda, O. M., Vollan, H. K. M., Provenzano, E., Bardwell, H. A., Pugh, M., Jones, L. R., Russell, R., Sammut, S., et al. (2016) · Nature Communications · doi:10.1038/ncomms11479 · Cited by 1,752
The multifaceted roles of fatty acid synthesis in cancer
Röhrig, F., & Schulze, A. (2016) · Nature Reviews Cancer · doi:10.1038/nrc.2016.89 · Cited by 1,651
Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma
Morin, R. D., Mendez-Lago, M., Mungall, A. J., Goya, R., Mungall, K. L., Corbett, R. D., Johnson, N. A., Severson, T. M., Chiu, R., Field, M., et al. (2011) · Nature · doi:10.1038/nature10351 · Cited by 1,614
Research works printed but not linked: 1
- Gil, 2016, Deregulated expression of HDAC9 in B cells promotes development of lymphoproliferative disease and lymphoma in mice, Disease Models & Mechanisms, 9, 1483
Cited by
Sorted by citations
Lv, L.-Z., Wang, Z.-D., Ren, J.-J., Li, L.-H., Liu, X.-B., Li, J.-L., Zhu, H., Jiang, B., Han, Y.-P., Zhou, X.-M., et al. (2026) · Frontiers in Genetics · doi:10.3389/fgene.2025.1722453 · Cited by 7
Metadata
- Authors
- Brancolini, C., Gagliano, T., & Minisini, M.
- Affiliations
- University of Udine (IT)
- Corresponding author
- Brancolini, Claudio
- Venue
- Pharmacology & Therapeutics
- Publisher
- Elsevier BV
- Published
- 2022-10
- Volume
- 238
- Pages
- 108190
- ISSN
- 0163-7258 (ISSN-L)
- OpenAlex
- W4226377997
- Cited by
- 55
- References
- 229
- Citations by year
- 2026: 9 · 2025: 20 · 2024: 14 · 2023: 9 · 2022: 3
- FWCI
- 1.22
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Pharmacology & Therapeutics (publishedVersion, cc-by-nc-nd)
- SSRN Electronic Journal (publishedVersion)
- PubMed (publishedVersion)
- Institutional Research Information System (University of Udine) (submittedVersion, cc-by)
- Funders
- Interreg
- European Commission
- Associazione Italiana per la Ricerca sul Cancro
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Histone Deacetylase Inhibitors Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Keywords
- histone deacetylase, epigenetic plasticity, cancer cells, epigenetic therapy, transcriptional regulation, epigenetic drugs, selective targeting, tumor microenvironment
- MeSH terms
- Histone Deacetylases, Humans, DNA Methylation, Epigenesis, Genetic, Epigenomics, Tumor Microenvironment, Carcinogenesis
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
A language model drew the claims from the paper on 2026-10-10, under version 3 of the claim definition (model deepseek-v4.1-flash, prompt extract-v3).
A second model labelled each claim on 2026-10-10 (model jev-1.13-20260917, definition revision gold-guideline-v0.2).
Cited sources are checked with a language model’s help (gpt-6-sol).
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review