Human gut microbiota: Does diet matter?
Open accessAbstract
The human oro-gastrointestinal (GI) tract is a complex system, consisting of oral cavity, pharynx, oesophagus, stomach, small intestine, large intestine, rectum and anus, which all together with the accessory digestive organs constitute the digestive system. The function of the digestive system is to break down dietary constituents into small molecules and then absorb these for subsequent distribution throughout the body. Besides digestion and carbohydrate metabolism, the indigenous microbiota has an important influence on host physiological, nutritional and immunological processes, and commensal bacteria are able to modulate the expression of host genes that regulate diverse and fundamental physiological functions. The main external factors that can affect the composition of the microbial community in generally healthy adults include major dietary changes and antibiotic therapy. Changes in some selected bacterial groups have been observed due to controlled changes to the normal diet e.g. high-protein diet, high-fat diet, prebiotics, probiotics and polyphenols. More specifically, changes in the type and quantity of non-digestible carbohydrates in the human diet influence both the metabolic products formed in the lower regions of the GI tract and the bacterial populations detected in faeces. The interactions between dietary factors, gut microbiota and host metabolism are increasingly demonstrated to be important for maintaining homeostasis and health. Therefore the aim of this review is to summarise the effect of diet, and especially dietary interventions, on the human gut microbiota. Furthermore, the most important confounding factors (methodologies used and intrinsic human factors) in relation to gut microbiota analyses are elucidated.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Limited food choice is a direct selective pressure on gut microbes because different microbes have preferred substrates; for example, Roseburia and Bacteroides are sensitive to dietary carbohydrate and protein, respectively, and the proportion of Bacteroidetes depends on the type of dietary fiber that reaches the colon.
“Limited food choice is a direct selective pressure as different microbes have their preferred substrates, e.g., Roseburia and Bacteroides are sensitive to dietary carbohydrate and protein, respectively, and the proportion of Bacteroidetes is dependent on the type of dietary fiber that reaches the colon [71,72,73].”
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
A human gut microbial gene catalogue established by metagenomic sequencing
MetaHIT Consortium, Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., et al. (2010) · Nature · doi:10.1038/nature08821 · Cited by 11,624 · see citing works
Human gut microbes associated with obesity
Ley, R. E., Turnbaugh, P. J., Klein, S., & Gordon, J. I. (2006) · Nature · doi:10.1038/4441022a · Cited by 8,785 · see citing works
Diversity of the Human Intestinal Microbial Flora
Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913 · see citing works
A core gut microbiome in obese and lean twins
Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823 · see citing works
Human gut microbiome viewed across age and geography
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815 · see citing works
Linking long-term dietary patterns with gut microbial enterotypes
Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., Bewtra, M., Knights, D., Walters, W. A., Knight, R., et al. (2011) · Science · doi:10.1126/science.1208344 · Cited by 6,513 · see citing works
De Filippo, C., Cavalieri, D., Di Paola, M., Ramazzotti, M., Poullet, J. B., Massart, S., Collini, S., Pieraccini, G., & Lionetti, P. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1005963107 · Cited by 5,579 · see citing works
Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., & Knight, R. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002601107 · Cited by 4,774 · see citing works
Gut microbiota composition correlates with diet and health in the elderly
Claesson, M. J., Jeffery, I. B., Conde, S., Power, S. E., O’Connor, E. M., Cusack, S., Harris, H. M. B., Coakley, M., Lakshminarayanan, B., O’Sullivan, O., et al. (2012) · Nature · doi:10.1038/nature11319 · Cited by 3,314 · see citing works
Development of the Human Infant Intestinal Microbiota
Palmer, C., Bik, E. M., DiGiulio, D. B., Relman, D. A., & Brown, P. O. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050177 · Cited by 2,877 · see citing works
Lozupone, C., Hamady, M., Kelley, S. T., & Knight, R. D. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.01996-06 · Cited by 2,717 · see citing works
Dietary modulation of the human colonic microbiota: updating the concept of prebiotics
Gibson, G. R., Probert, H. M., Loo, J. V., Rastall, R. A., & Roberfroid, M. B. (2004) · Nutrition Research Reviews · doi:10.1079/nrr200479 · Cited by 2,539 · see citing works
MICROBIAL ECOLOGY OF THE GASTROINTESTINAL TRACT
Savage, D. C. (1977) · Annual Review of Microbiology · doi:10.1146/annurev.mi.31.100177.000543 · Cited by 2,436 · see citing works
Microbial degradation of complex carbohydrates in the gut
Flint, H. J., Scott, K. P., Duncan, S. H., Louis, P., & Forano, E. (2012) · Gut Microbes · doi:10.4161/gmic.19897 · Cited by 2,331 · see citing works
Bacteroides : the Good, the Bad, and the Nitty-Gritty
Wexler, H. M. (2007) · Clinical Microbiology Reviews · doi:10.1128/cmr.00008-07 · Cited by 2,318 · see citing works
How antibiotics kill bacteria: from targets to networks
Kohanski, M. A., Dwyer, D. J., & Collins, J. J. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2333 · Cited by 2,266 · see citing works
Factors influencing the composition of the intestinal microbiota in early infancy
Penders, J., Thijs, C., Vink, C., Stelma, F. F., Snijders, B., Kummeling, I., van den Brandt, P. A., & Stobberingh, E. E. (2006) · PEDIATRICS · doi:10.1542/peds.2005-2824 · Cited by 2,232 · see citing works
Prebiotic effects: metabolic and health benefits
Roberfroid, M. B., Gibson, G. R., Hoyles, L., McCartney, A. L., Rastall, R. A., Rowland, I. R., Wolvers, D. A. W., Watzl, B., Szajewska, H., Stahl, B., et al. (2010) · British Journal Of Nutrition · doi:10.1017/s0007114510003363 · Cited by 2,098 · see citing works
Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium
Derrien, M., Vaughan, E. E., Plugge, C. M., & de Vos, W. M. (2004) · International Journal of Systematic and Evolutionary Microbiology · doi:10.1099/ijs.0.02873-0 · Cited by 2,094 · see citing works
Multivariate analyses in microbial ecology
Ramette, A. (2007) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2007.00375.x · Cited by 1,930 · see citing works
Guidelines for the evaluation of probiotics in food
Who, F. (2002) · Medical Entomology and Zoology · Cited by 1,843 · see citing works
The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age
Mariat, D., Firmesse, O., Levenez, F., Guimarăes, V., Sokol, H., Doré, J., Corthier, G., & Furet, J.-P. (2009) · BMC Microbiology · doi:10.1186/1471-2180-9-123 · Cited by 1,755 · see citing works
Composition, variability, and temporal stability of the intestinal microbiota of the elderly
Claesson, M. J., Cusack, S., O'Sullivan, O., Greene-Diniz, R., de Weerd, H., Flannery, E., Marchesi, J. R., Falush, D., Dinan, T., Fitzgerald, G., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000097107 · Cited by 1,754 · see citing works
Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
Flint, H. J., Bayer, E. A., Rincón, M. T., Lamed, R., & White, B. A. (2008) · Nature Reviews Microbiology · doi:10.1038/nrmicro1817 · Cited by 1,710 · see citing works
Dominant and diet-responsive groups of bacteria within the human colonic microbiota
Walker, A. W., Ince, J., Duncan, S. H., Webster, L. M., Holtrop, G., Ze, X., Brown, D., Stares, M. D., Scott, P., Bergerat, A., et al. (2011) · The ISME Journal · doi:10.1038/ismej.2010.118 · Cited by 1,632 · see citing works
The control and consequences of bacterial fermentation in the human colon
Cummings, J. H., & Macfarlane, G. T. (1991) · Journal of Applied Bacteriology · doi:10.1111/j.1365-2672.1991.tb02739.x · Cited by 1,499 · see citing works
Suau, A., Bonnet, R., Sutren, M., Godon, J.-J., Gibson, G. R., Collins, M. D., & Doré, J. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.11.4799-4807.1999 · Cited by 1,490 · see citing works
Wadsworth anaerobic bacteriology manual
Sutter, V. L., Citron, D. M., & Finegold, S. M. (1980) · Medical Entomology and Zoology · Cited by 1,403 · see citing works
Zoetendal, E. G., Akkermans, A. D. L., & de Vos, W. M. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.10.3854-3859.1998 · Cited by 1,360 · see citing works
Harmsen, H. J. M., Wildeboer-Veloo, A. C. M., Raangs, G. C., Wagendorp, A. A., Klijn, N., BINDELS, J. G., & Welling, G. W. (2000) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/00005176-200001000-00019 · Cited by 1,326 · see citing works
The microbiology of butyrate formation in the human colon
Pryde, S. E., Duncan, S. H., Hold, G. L., Stewart, C. S., & Flint, H. J. (2002) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2002.tb11467.x · Cited by 1,320 · see citing works
Human colonic microbiota associated with diet, obesity and weight loss
Duncan, S. H., Lobley, G. E., Holtrop, G., Ince, J., Johnstone, A. M., Louis, P., & Flint, H. J. (2008) · International Journal of Obesity · doi:10.1038/ijo.2008.155 · Cited by 1,222 · see citing works
Viruses in the faecal microbiota of monozygotic twins and their mothers
Reyes, A., Haynes, M. R., Hanson, N., Angly, F. E., Heath, A. C., Rohwer, F. L., & Gordon, J. I. (2010) · Nature · doi:10.1038/nature09199 · Cited by 1,198 · see citing works
Symbiotic gut microbes modulate human metabolic phenotypes
Li, M., Wang, B., Zhang, M., Rantalainen, M., Wang, S., Zhou, H., Zhang, Y., Shen, J., Pang, X., Zhang, M., et al. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0712038105 · Cited by 1,144 · see citing works
Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota
Hehemann, J.-H., Correc, G., Barbeyron, T., Helbert, W., Czjzek, M., & Michel, G. (2010) · Nature · doi:10.1038/nature08937 · Cited by 1,117 · see citing works
Dietary factors and low-grade inflammation in relation to overweight and obesity
Calder, P. C., Ahluwalia, N., Brouns, F., Buetler, T., Clement, K., Cunningham, K., Esposito, K., Jönsson, L. S., Kolb, H., Lansink, M., et al. (2011) · British Journal of Nutrition · doi:10.1017/s0007114511005460 · Cited by 1,098 · see citing works
Ze, X., Duncan, S. H., Louis, P., & Flint, H. J. (2012) · The ISME Journal · doi:10.1038/ismej.2012.4 · Cited by 1,060 · see citing works
Franks, A. H., Harmsen, H. J. M., Raangs, G. C., Jansen, G. J., Schut, F., & Welling, G. W. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.9.3336-3345.1998 · Cited by 1,055 · see citing works
The influence of diet on the gut microbiota
Scott, K. P., Gratz, S. W., Sheridan, P. O., Flint, H. J., & Duncan, S. H. (2013) · Pharmacological Research · doi:10.1016/j.phrs.2012.10.020 · Cited by 1,052 · see citing works
Mueller, S., Saunier, K., Hanisch, C., Norin, E., Alm, L., Midtvedt, T., Cresci, A., Silvi, S., Orpianesi, C., Verdenelli, M. C., et al. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.72.2.1027-1033.2006 · Cited by 1,006 · see citing works
Phylogenetic Relationships of Butyrate-Producing Bacteria from the Human Gut
Barcenilla, A., Pryde, S. E., Martin, J. C., Duncan, S. H., Stewart, C. S., Henderson, C., & Flint, H. J. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.4.1654-1661.2000 · Cited by 996 · see citing works
Duncan, S. H., Belenguer, A., Holtrop, G., Johnstone, A. M., Flint, H. J., & Lobley, G. E. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.02340-06 · Cited by 941 · see citing works
Towards the human intestinal microbiota phylogenetic core
Tap, J., Mondot, S., Levenez, F., Pelletier, E., Caron, C., Furet, J., Ugarte, E., Muñoz‐Tamayo, R., Paslier, D. L. E., Nalin, R., et al. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.01982.x · Cited by 927 · see citing works
Molecular Monitoring of Succession of Bacterial Communities in Human Neonates
Favier, C. F., Vaughan, E. E., de Vos, W. M., & Akkermans, A. D. L. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.1.219-226.2002 · Cited by 859 · see citing works
Belenguer, A., Duncan, S. H., Calder, A. G., Holtrop, G., Louis, P., Lobley, G. E., & Flint, H. J. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.72.5.3593-3599.2006 · Cited by 856 · see citing works
Ramirez-Farias, C., Slezak, K., Fuller, Z., Duncan, A., Holtrop, G., & Louis, P. (2008) · British Journal of Nutrition · doi:10.1017/s0007114508019880 · Cited by 822 · see citing works
Effect of antimicrobial agents on the ecological balance of human microflora
Sullivan, Å., Edlund, C., & Nord, C. E. (2001) · The Lancet Infectious Diseases · doi:10.1016/s1473-3099(01)00066-4 · Cited by 816 · see citing works
Walker, A. W., Duncan, S. H., McWilliam Leitch, E. C., Child, M. W., & Flint, H. J. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.7.3692-3700.2005 · Cited by 796 · see citing works
The role of pH in determining the species composition of the human colonic microbiota
Duncan, S. H., Louis, P., Thomson, J. M., & Flint, H. J. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.01931.x · Cited by 786 · see citing works
Louis, P., Young, P., Holtrop, G., & Flint, H. J. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.02066.x · Cited by 783 · see citing works
Understanding the effects of diet on bacterial metabolism in the large intestine
Louis, P., Scott, K. P., Duncan, S. H., & Flint, H. J. (2007) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2007.03322.x · Cited by 775 · see citing works
Russell, W. R., Gratz, S. W., Duncan, S. H., Holtrop, G., Ince, J., Scobbie, L., Duncan, G., Johnstone, A. M., Lobley, G. E., Wallace, R. J., et al. (2011) · The American Journal of Clinical Nutrition · doi:10.3945/ajcn.110.002188 · Cited by 775 · see citing works
Bartosch, S., Fite, A., Macfarlane, G. T., & McMurdo, M. E. T. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.6.3575-3581.2004 · Cited by 762 · cited 1× · see citing works
“Moreover, when the hospitalisation was combined with antibiotic treatment, reductions in other bacterial groups were also observed((140)).”
Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon
Seksik, P., Rigottier‐Gois, L., Gramet, G., BRIEND‐SUTREN, M., Pochart, P., Marteau, P. R., Jian, R., & Dore, J. M. (2003) · Gut · doi:10.1136/gut.52.2.237 · Cited by 746 · see citing works
Experimental and analytical tools for studying the human microbiome
Kuczynski, J., Lauber, C. L., Walters, W. A., Parfrey, L. W., Clemente, J. C., Gevers, D., & Knight, R. D. (2011) · Nature Reviews Genetics · doi:10.1038/nrg3129 · Cited by 710 · see citing works
Collado, M. C., Derrien, M., Isolauri, E., de Vos, W. M., & Salminen, S. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.01477-07 · Cited by 706 · see citing works
Effect of tea phenolics and their aromatic fecal bacterial metabolites on intestinal microbiota
Lee, H. C., Jenner, A. M., Low, C. S., & Lee, Y. K. (2006) · Research in Microbiology · doi:10.1016/j.resmic.2006.07.004 · Cited by 697 · see citing works
The contribution of the large intestine to energy supplies in man
N I, M. (1984) · The American Journal of Clinical Nutrition · doi:10.1093/ajcn/39.2.338 · Cited by 691 · see citing works
Queipo-Ortuño, M. I., Boto-Ordóñez, M., Murri, M., Gomez-Zumaquero, J. M., Clemente-Postigo, M., Estruch, R., Cardona Diaz, F., Andrés-Lacueva, C., & Tinahones, F. J. (2012) · The American Journal of Clinical Nutrition · doi:10.3945/ajcn.111.027847 · Cited by 671 · see citing works
The Mucin Degrader Akkermansia muciniphila Is an Abundant Resident of the Human Intestinal Tract
Derrien, M., Collado, M. C., Amor, K. B., Salminen, S., & de Vos, W. M. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.01226-07 · Cited by 659 · see citing works
Matsuki, T., Watanabe, K., Fujimoto, J., Takada, T., & Tanaka, R. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.12.7220-7228.2004 · Cited by 656 · see citing works
Martínez, I., Kim, J., Duffy, P. R., Schlegel, V. L., & Walter, J. (2010) · PLoS ONE · doi:10.1371/journal.pone.0015046 · Cited by 645 · see citing works
Schiessel, H. (2013) · doi:10.1201/b16269-3 · Cited by 643 · see citing works
Flint, H. J., Duncan, S. H., Scott, K. P., & Louis, P. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2007.01281.x · Cited by 632 · see citing works
Normal Indigenous Intestinal Flora
Finegold, S. M., Sutter, V. L., & Mathisen, G. E. (1983) · Elsevier eBooks · doi:10.1016/b978-0-12-341280-5.50007-0 · Cited by 618 · see citing works
Stark, P. L., & Lee, A. (1982) · Journal of Medical Microbiology · doi:10.1099/00222615-15-2-189 · Cited by 616 · see citing works
Microbial diversity and the genetic nature of microbial species
Achtman, M., & Wagner, M. (2008) · Nature Reviews Microbiology · doi:10.1038/nrmicro1872 · Cited by 611 · see citing works
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
Werner, J. J., Koren, O., Hugenholtz, P., DeSantis, T. Z., Walters, W. A., Caporaso, J. G., Angenent, L. T., Knight, R. D., & Ley, R. E. (2011) · The ISME Journal · doi:10.1038/ismej.2011.82 · Cited by 602 · see citing works
Salonen, A., Nikkilä, J., Jalanka, J., Immonen, O., Rajilić-Stojanović, M. D., Kekkonen, R. A., Palva, A., & de Vos, W. M. (2010) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2010.02.007 · Cited by 592 · see citing works
Tzounis, X., Rodriguez‐Mateos, A., Vulevic, J., Gibson, G. R., Kwik-Uribe, C. L., & Spencer, J. P. E. (2010) · American Journal of Clinical Nutrition · doi:10.3945/ajcn.110.000075 · Cited by 582 · see citing works
Broekaert, W. F., Courtin, C. M., Verbeke, K., de Wiele, T. V., Verstraete, W., & Delcour, J. A. (2011) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408390903044768 · Cited by 563 · see citing works
Diversity of the human gastrointestinal tract microbiota revisited
Rajilić‐Stojanović, M., Smidt, H., & De Vos, W. M. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2007.01369.x · Cited by 559 · see citing works
Fallani, M., Young, D., Scott, J. A., Norin, E. L., Amarri, S., Adam, R., Aguilera, J., Khanna, S., Gil, Á., Edwards, C. A., et al. (2010) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/mpg.0b013e3181d1b11e · Cited by 559 · see citing works
The Host Genotype Affects the Bacterial Community in the Human Gastronintestinal Tract
Zoetendal, A. D. L. A. E. G. (2001) · Microbial Ecology in Health and Disease · doi:10.1080/089106001750462669 · Cited by 558 · see citing works
Quantification of Bacterial Groups within Human Fecal Flora by Oligonucleotide Probe Hybridization
Sghir, A., Gramet, G., Suau, A., Rochet, V., Pochart, P., & Dore, J. M. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.5.2263-2266.2000 · Cited by 521 · see citing works
Effect of diet on human fecal flora: comparison of Japanese and American diets
Finegold, S. M., Attebery, H. R., & Sutter, V. L. (1974) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/27.12.1456 · Cited by 520 · see citing works
Anderson, R. C., Cookson, A. L., McNabb, W. C., Park, Z., McCann, M. J., Kelly, W. J., & Roy, N. C. (2010) · BMC Microbiology · doi:10.1186/1471-2180-10-316 · Cited by 510 · see citing works
Rajilić‐Stojanović, M., Heilig, H. G. H. J., Molenaar, D., Kajander, K., Surakka, A., Smidt, H., & De Vos, W. M. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.01900.x · Cited by 484 · see citing works
Turnbaugh, P. J., Quince, C., Faith, J. J., McHardy, A. C., Yatsunenko, T., Niazi, F., Affourtit, J., Egholm, M., Henrissat, B., Knight, R., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002355107 · Cited by 478 · see citing works
Interplay Between Weight Loss and Gut Microbiota Composition in Overweight Adolescents
Santacruz, A., Marcos, A., Wärnberǵ, J., Martí, A., Martín‐Matillas, M., Campoy, C., Moreno, L. A., Veiga, Ó. L., Redondo-Figuero, C. G., Garagorri, J. M., et al. (2009) · Obesity · doi:10.1038/oby.2009.112 · Cited by 474 · see citing works
A vegan or vegetarian diet substantially alters the human colonic faecal microbiota
Zimmer, J., Lange, B., Frick, J.-S., Sauer, H., Zimmermann, K., Schwiertz, A., Rusch, K., Klosterhalfen, S., & Enck, P. (2012) · European Journal of Clinical Nutrition · doi:10.1038/ejcn.2011.141 · Cited by 465 · cited 4× · see citing works
“Strict vegetarians have higher percentages and/or numbers of Lachnospiraceae and Clostridium ramosum group (Clostridial cluster XVIII) bacteria than omnivorous people(135,136), whereas vegans have lower faecal numbers of Bacteroides spp., bifidobacteria and Enterobacteriaceae(137).”
InfluentialBezirtzoglou, E., Tsiotsias, A., & Welling, G. W. (2011) · Anaerobe · doi:10.1016/j.anaerobe.2011.03.009 · Cited by 453 · see citing works
Establishment and development of intestinal microbiota in preterm neonates
Arboleya, S., Binetti, A. G., Salazar, N., Fernández, N., Sánchez, G. S., Hernández‐Barranco, A. M., Margollés, A., Reyes‐Gavilán, C. G. D. L., & Gueimonde, M. (2011) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2011.01261.x · Cited by 439 · see citing works
Fava, F., Gitau, R., Griffin, B. A., Gibson, G. R., Tuohy, K. M., & Lovegrove, J. A. (2012) · International Journal of Obesity · doi:10.1038/ijo.2012.33 · Cited by 435 · see citing works
Human intestinal microflora in health and disease
(1985) · Food and Chemical Toxicology · doi:10.1016/0278-6915(85)90079-1 · Cited by 429 · see citing works
Woodmansey, E. J., McMurdo, M. E. T., Macfarlane, G. T., & Macfarlane, S. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.10.6113-6122.2004 · Cited by 418 · see citing works
Microbial metabolism of dietary phenolic compounds in the colon
Aura, A. (2008) · Phytochemistry Reviews · doi:10.1007/s11101-008-9095-3 · Cited by 412 · see citing works
Comparative Study of Bacterial Groups within the Human Cecal and Fecal Microbiota
Marteau, P. R., Pochart, P., Dore, J. M., Béra‐Maillet, C., Bernalier, A., & Corthier, G. (2001) · Applied and Environmental Microbiology · doi:10.1128/aem.67.10.4939-4942.2001 · Cited by 406 · see citing works
Extensive Set of 16S rRNA-Based Probes for Detection of Bacteria in Human Feces
Harmsen, H. J. M., Raangs, G. C., He, T., Degener, J. E., & Welling, G. W. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.6.2982-2990.2002 · Cited by 401 · see citing works
Fallani, M., Amarri, S., Uusijärvi, A., Adam, R., Khanna, S., Aguilera, J., Gil, Á., Vieites, J. M., Norin, E. L., Young, D., et al. (2011) · Microbiology · doi:10.1099/mic.0.042143-0 · Cited by 393 · see citing works
Dissimilatory Amino Acid Metabolism in Human Colonic Bacteria
Smith, E. A., & Macfarlane, G. T. (1997) · Anaerobe · doi:10.1006/anae.1997.0121 · Cited by 388 · see citing works
Dridi, B., Henry, M., Khéchine, A. E., Raoult, D., & Drancourt, M. (2009) · PLoS ONE · doi:10.1371/journal.pone.0007063 · Cited by 384 · see citing works
Penders, J., Vink, C., Driessen, C., London, N. H. H. J., Thijs, C. T., & Stobberingh, E. E. (2004) · FEMS Microbiology Letters · doi:10.1016/j.femsle.2004.11.052 · Cited by 380 · see citing works
Champagne, C. P., Ross, R. P., Saarela, M., Hansen, K. F., & Charalampopoulos, D. (2011) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2011.07.005 · Cited by 363 · see citing works
Self-citationThe development of the bacterial flora in normal neonates
Rotimi, V. O., & Duerden, B. I. (1981) · Journal of Medical Microbiology · doi:10.1099/00222615-14-1-51 · Cited by 362 · see citing works
Falony, G., Vlachou, A., Verbrugghe, K., & Vuyst, L. D. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.01296-06 · Cited by 362 · see citing works
Magee, E. A., Richardson, C. J., Hughes, R., & Cummings, J. H. (2000) · The American Journal of Clinical Nutrition · doi:10.1093/ajcn/72.6.1488 · Cited by 359 · see citing works
Prebiotic carbohydrates modify the mucosa associated microflora of the human large bowel
Langlands, S. J. (2004) · Gut · doi:10.1136/gut.2003.037580 · Cited by 359 · see citing works
Colonic bacterial metabolites and human health
Russell, W. R., Hoyles, L., Flint, H. J., & Dumas, M. (2013) · Current Opinion in Microbiology · doi:10.1016/j.mib.2013.07.002 · Cited by 353 · see citing works
Hold, G. L., Schwiertz, A., Aminov, R. I., Blaut, M., & Flint, H. J. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.7.4320-4324.2003 · Cited by 350 · see citing works
Probiotics and prebiotics: can regulating the activities of intestinal bacteria benefit health?
Macfarlane, G. T., & Cummings, J. H. (1999) · BMJ · doi:10.1136/bmj.318.7189.999 · Cited by 347 · see citing works
Nadal, I., Santacruz, A., Marcos, A., Wärnberǵ, J., Garagorri, M., Moreno, L. A., Martín‐Matillas, M., Campoy, C., Martí, A., Moleres, A., et al. (2008) · International Journal of Obesity · doi:10.1038/ijo.2008.260 · Cited by 346 · see citing works
Vuyst, L. D., & Leroy, F. (2011) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2011.03.003 · Cited by 333 · see citing works
Schwiertz, A., Gruhl, B., Löbnitz, M., Michel, P., Radke, M. H., & Blaut, M. (2003) · Pediatric Research · doi:10.1203/01.pdr.0000078274.74607.7a · Cited by 326 · see citing works
Davis, L. M. G., Martínez, I., Walter, J., Goin, C., & Hutkins, R. W. (2011) · PLoS ONE · doi:10.1371/journal.pone.0025200 · Cited by 321 · see citing works
Harbige, L. S. (2003) · Lipids · doi:10.1007/s11745-003-1067-z · Cited by 321 · see citing works
The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity
Bent, S. J., & Forney, L. J. (2008) · The ISME Journal · doi:10.1038/ismej.2008.44 · Cited by 312 · see citing works
Kennedy, N. A., Walker, A. W., Berry, S. H., Duncan, S. H., Farquarson, F. M., Louis, P., Thomson, J., surname):, O. M. N. N. W. T. M. A. L. (. B., Satsangi, J. J., Flint, H. J., et al. (2014) · PLoS ONE · doi:10.1371/journal.pone.0088982 · Cited by 311 · see citing works
Harmsen, H. J. M., Wildeboer-Veloo, A. C. M., Grijpstra, J., Knol, J., Degener, J. E., & Welling, G. W. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.10.4523-4527.2000 · Cited by 309 · see citing works
Tuohy, K. M., Kolida, S., Lustenberger, A. M., & Gibson, G. R. (2001) · British Journal Of Nutrition · doi:10.1079/bjn2001394 · Cited by 304 · see citing works
Relationship of prebiotics and food to intestinal microflora
Blaut, M. (2002) · European Journal of Nutrition · doi:10.1007/s00394-002-1102-7 · Cited by 299 · see citing works
Selective colonization of insoluble substrates by human faecal bacteria
Leitch, E. C. M., Walker, A. W., Duncan, S. H., Holtrop, G., & Flint, H. J. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2006.01186.x · Cited by 297 · see citing works
Colonic Microbiota Signatures across Five Northern European Countries
Lay, C., Rigottier‐Gois, L., Holmstrøm, K., Rajilić-Stojanović, M. D., Vaughan, E. E., de Vos, W. M., Collins, M. D., Thiel, R., Namsolleck, P., Blaut, M., et al. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.7.4153-4155.2005 · Cited by 296 · see citing works
The impact of nutrition on the human microbiome
Flint, H. J. (2012) · Nutrition Reviews · doi:10.1111/j.1753-4887.2012.00499.x · Cited by 291 · see citing works
Studies of Intestinal Microflora
Gorbach, S. L., Nahas, L., Lerner, P. I., & Weinstein, L. (1967) · Gastroenterology · doi:10.1016/s0016-5085(19)34121-6 · Cited by 284 · see citing works
Hughes, S. A., Shewry, P. R., Gibson, G. R., McCleary, B. V., & Rastall, R. A. (2008) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2008.00478.x · Cited by 276 · see citing works
Up-regulating the Human Intestinal Microbiome Using Whole Plant Foods, Polyphenols, and/or Fiber
Tuohy, K. M., Conterno, L., Gasperotti, M., & Viola, R. (2012) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf2053959 · Cited by 272 · see citing works
Brinkworth, G. D., Noakes, M., Clifton, P. M., & Bird, A. R. (2009) · British Journal Of Nutrition · doi:10.1017/s0007114508094658 · Cited by 269 · see citing works
Hydrogen sulphide: a bacterial toxin in ulcerative colitis?
Pitcher, M., & Cummings, J. H. (1996) · Gut · doi:10.1136/gut.39.1.1 · Cited by 267 · see citing works
Colonic microflora: Nutrition and health
Cummings, J. H., & Macfarlane, G. T. (1997) · Nutrition · doi:10.1016/s0899-9007(97)00114-7 · Cited by 261 · see citing works
Gibson, G. R., Macfarlane, G. T., & Cummings, J. H. (1988) · Journal of Applied Bacteriology · doi:10.1111/j.1365-2672.1988.tb01498.x · Cited by 259 · see citing works
Medina, M., Izquierdo, E., Ennahar, S., & Sanz, Y. (2007) · Clinical & Experimental Immunology · doi:10.1111/j.1365-2249.2007.03522.x · Cited by 249 · see citing works
Phylogeny, culturing, and metagenomics of the human gut microbiota
Walker, A. W., Duncan, S. H., Louis, P., & Flint, H. J. (2014) · Trends in Microbiology · doi:10.1016/j.tim.2014.03.001 · Cited by 239 · see citing works
Abell, G. C. J., Cooke, C. M., Bennett, C. N., Conlon, M. A., & McOrist, A. L. (2008) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2008.00527.x · Cited by 233 · see citing works
Mohan, R., Koebnick, C., Schildt, J., Schmidt, S., Mueller, M. J., Possner, M., Radke, M. H., & Blaut, M. (2006) · Journal of Clinical Microbiology · doi:10.1128/jcm.00767-06 · Cited by 231 · see citing works
Modulation of Nonspecific Mechanisms of Defense by Lactic Acid Bacteria: Effective Dose
Donnet‐Hughes, A., Rochat, F., Serrant, P., Aeschlimann, J., & Schiffrin, E. J. (1999) · Journal of Dairy Science · doi:10.3168/jds.s0022-0302(99)75304-x · Cited by 215 · see citing works
Vanhoutte, T., Huys, G. R. B., Brandt, E. D., & Swings, J. (2004) · FEMS Microbiology Ecology · doi:10.1016/j.femsec.2004.03.001 · Cited by 215 · see citing works
Donato, K. A., Gareau, M. G., Wang, Y. J. J., & Sherman, P. M. (2010) · Microbiology · doi:10.1099/mic.0.040139-0 · Cited by 212 · see citing works
Benus, R. F. J., van der Werf, T. S., Welling, G. W., Judd, P. A., Taylor, M. A., Harmsen, H. J. M., & Whelan, K. (2010) · British Journal Of Nutrition · doi:10.1017/s0007114510001030 · Cited by 210 · see citing works
Stewart, J. A., CHADWICK, V. S., & Murray, A. (2005) · Journal of Medical Microbiology · doi:10.1099/jmm.0.46189-0 · Cited by 205 · see citing works
Antimicrobial susceptibility of bifidobacteria
Moubareck, C. A., Gavini, F., Vaugien, L., Butel, M. J., & Doucet‐Populaire, F. (2004) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkh495 · Cited by 199 · see citing works
Delgado, S., Flórez, A. B., & Mayo, B. (2005) · Current Microbiology · doi:10.1007/s00284-004-4431-3 · Cited by 195 · see citing works
Development of bacterial and bifidobacterial communities in feces of newborn babies
Favier, C. F., de Vos, W. M., & Akkermans, A. D. L. (2003) · Anaerobe · doi:10.1016/j.anaerobe.2003.07.001 · Cited by 194 · see citing works
Fecal microbial flora in Seventh Day Adventist populations and control subjects
Finegold, S. M., Sutter, V. L., Sugihara, P. T., Elder, H., Lehmann, S., & Phillips, R. (1977) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/30.11.1781 · Cited by 186 · see citing works
Karlsson, F. H., Ussery, D. W., Nielsen, J., & Nookaew, I. (2011) · Microbial Ecology · doi:10.1007/s00248-010-9796-1 · Cited by 179 · see citing works
Hopkins, M. J., Englyst, H. N., Macfarlane, S., Furrie, E., Macfarlane, G. T., & McBain, A. J. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.11.6354-6360.2003 · Cited by 178 · see citing works
Molecular biological methods for studying the gut microbiota: the EU human gut flora project
Blaut, M., COLLINS, M. D., Welling, G. W., Dore, J. M., Loo, J. V., & de Vos, W. M. (2002) · British Journal Of Nutrition · doi:10.1079/bjn/2002539 · Cited by 176 · see citing works
Factors influencing the presence of faecal lactobacilli in early infancy.
Hall, M. A., Cole, C. B., Smith, S. L., Fuller, R., & Cj, R. (1990) · Archives of Disease in Childhood · doi:10.1136/adc.65.2.185 · Cited by 176 · see citing works
Robert, C., & Bernalier‐Donadille, A. (2003) · FEMS Microbiology Ecology · doi:10.1016/s0168-6496(03)00207-1 · Cited by 173 · see citing works
Walton, G., van den Heuvel, E. G. H. M., Kosters, M. H. W., Rastall, R. A., Tuohy, K. M., & Gibson, G. R. (2011) · British Journal Of Nutrition · doi:10.1017/s0007114511004697 · Cited by 173 · see citing works
Dore, J. M., Sghir, A., Gramet, G., Corthier, G., & Pochart, P. (1998) · Systematic and Applied Microbiology · doi:10.1016/s0723-2020(98)80009-x · Cited by 171 · see citing works
Rinne, M., Gueimonde, M., Kalliomäki, M. A., Hoppu, U., Salminen, S., & Isolauri, E. (2004) · FEMS Immunology & Medical Microbiology · doi:10.1016/j.femsim.2004.07.005 · Cited by 168 · see citing works
Lay, C., Sutren, M., Rochet, V., Saunier, K., Dore, J. M., & Rigottier‐Gois, L. (2005) · Environmental Microbiology · doi:10.1111/j.1462-2920.2005.00763.x · Cited by 166 · see citing works
Bifidobacteria in the intestinal tract of infants: an in-vivo study
Bullen, C. L., TEARLE, P. V., & Willis, A. T. (1976) · Journal of Medical Microbiology · doi:10.1099/00222615-9-3-325 · Cited by 164 · see citing works
Rigottier‐Gois, L., Bourhis, A.-G. L., Gramet, G., Rochet, V., & Dore, J. M. (2003) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2003.tb01063.x · Cited by 163 · see citing works
Lactate has the potential to promote hydrogen sulphide formation in the human colon
Marquet, P., Duncan, S. H., Chassard, C., Bernalier‐Donadille, A., & Flint, H. J. (2009) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2009.01750.x · Cited by 162 · see citing works
Maukonen, J., Satokari, R., Mättö, J., Söderlund, H., Mattila-Sandholm, T., & Saarela, M. (2006) · Journal of Medical Microbiology · doi:10.1099/jmm.0.46134-0 · Cited by 156 · see citing works
Self-citationFecal Microbial Diversity in a Strict Vegetarian as Determined by Molecular Analysis and Cultivation
Hayashi, H., Sakamoto, M., & Benno, Y. (2002) · Microbiology and Immunology · doi:10.1111/j.1348-0421.2002.tb02769.x · Cited by 152 · see citing works
Impact of Consumption of Oligosaccharide-Containing Biscuits on the Fecal Microbiota of Humans
Tannock, G. W., Munro, K., Bibiloni, R., Simon, M. A., Hargreaves, P., Gopal, P. K., Harmsen, H. J. M., & Welling, G. W. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.4.2129-2136.2004 · Cited by 144 · see citing works
Investigation of the intestinal microbiota in preterm infants using different methods
Rougé, C., Goldenberg, O., Ferraris, L., Berger, B. W., Rochat, F., Legrand, A., Göbel, U. B., Vodovar, M., Voyer, M., Rozé, J., et al. (2010) · Anaerobe · doi:10.1016/j.anaerobe.2010.06.002 · Cited by 141 · see citing works
Magne, F., Abély, M., Boyer, F., Morville, P., Pochart, P., & Suau, A. (2006) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2006.00097.x · Cited by 140 · see citing works
The Anaerobic Microflora of the Human Body
Hentges, D. J. (1993) · Clinical Infectious Diseases · doi:10.1093/clinids/16.supplement_4.s175 · Cited by 139 · see citing works
A critical review of measurement uncertainty in the enumeration of food micro-organisms
Corry, J. E. L., Jarvis, B., Passmore, S., & Hedges, A. J. (2006) · Food Microbiology · doi:10.1016/j.fm.2006.05.003 · Cited by 138 · see citing works
Fecal bacteriology of colonic polyp patients and control patients.
Finegold, S. M., Flora, D. J., Attebery, H. R., & Sutter, V. L. (1975) · PubMed · Cited by 137 · see citing works
Habitual Dietary Intake Is Associated with Stool Microbiota Composition in Monozygotic Twins
Simões, C., Maukonen, J., Kaprio, J. A., Rissanen, A., Pietiläinen, K. H., & Saarela, M. (2013) · Journal of Nutrition · doi:10.3945/jn.112.166322 · Cited by 137 · see citing works
Self-citationThe normal intestinal microbiota
Marchesi, J. R., & Shanahan, F. (2007) · Current Opinion in Infectious Diseases · doi:10.1097/qco.0b013e3282a56a99 · Cited by 136 · see citing works
Influence of Fecal Sample Storage on Bacterial Community Diversity
Roesch, L. F. W., Casella, G., Simell, O., Krischer, J. P., Wasserfall, C. H., Schatz, D., Atkinson, M. A., Neu, J., & Triplett, E. W. (2009) · The Open Microbiology Journal · doi:10.2174/1874285800903010040 · Cited by 136 · see citing works
Willemsen, L. E. M., Koetsier, M. A., Balvers, M., Beermann, C., Stahl, B., & van Tol, E. A. F. (2008) · European Journal of Nutrition · doi:10.1007/s00394-008-0712-0 · Cited by 130 · see citing works
Aminov, R. I., Walker, A. W., Duncan, S. H., Harmsen, H. J. M., Welling, G. W., & Flint, H. J. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.00701-06 · Cited by 129 · see citing works
Zoetendal, E. G., Amor, K. B., Harmsen, H. J. M., Schut, F., Akkermans, A. D. L., & de Vos, W. M. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.9.4225-4232.2002 · Cited by 129 · see citing works
In vitro alterations of intestinal bacterial microbiota in fecal samples during storage
Ott, S. J., Musfeldt, M., Timmis, K. N., Hampe, J., Wenderoth, D. F., & Schreiber, S. (2004) · Diagnostic Microbiology and Infectious Disease · doi:10.1016/j.diagmicrobio.2004.08.012 · Cited by 127 · see citing works
Lactobacillus casei Abundance Is Associated with Profound Shifts in the Infant Gut Microbiome
Cox, M. J., Huang, Y. J., Fujimura, K. E., Liu, J. T., McKean, M., Boushey, H. A., Segal, M. R., Brodie, E., Cabana, M. D., & Lynch, S. V. (2010) · PLoS ONE · doi:10.1371/journal.pone.0008745 · Cited by 126 · see citing works
Wang, M., Ahrné, S., Antonsson, M., & Molin, G. (2004) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2004.06.002 · Cited by 123 · see citing works
Maukonen, J., Simões, C., & Saarela, M. (2011) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2011.01257.x · Cited by 121 · see citing works
Self-citationPerspectives of the potential implications of wine polyphenols on human oral and gut microbiota
Requena, T., Monagas, M., Pozo‐Bayón, M. Á., Martín‐Álvarez, P. J., Bartolomé, B., del Campo, R., Ávila, M., Martínez‐Cuesta, M. C., Peláez, C., & Moreno-Arribas, M. V. (2010) · Trends in Food Science & Technology · doi:10.1016/j.tifs.2010.04.004 · Cited by 120 · see citing works
Cani, P. D. (2012) · Clinical Microbiology and Infection · doi:10.1111/j.1469-0691.2012.03866.x · Cited by 117 · see citing works
Effect of a high-beef diet on the fecal bacterial flora of humans.
Hentges, D. J., Maier, B. R., Burton, G. C., Flynn, M. A., & Tsutakawa, R. K. (1977) · PubMed · Cited by 114 · see citing works
An anthroposophic lifestyle and intestinal microflora in infancy
Alm, J. S., Swartz, J., Björkstén, B., Engstrand, L. G., Engström, J., Kühn, I., Lilja, G., Möllby, R., Norin, E. L., Pershagen, G., et al. (2002) · Pediatric Allergy and Immunology · doi:10.1034/j.1399-3038.2002.01062.x · Cited by 112 · see citing works
Puupponen‐Pimiä, R., Seppänen‐Laakso, T., Kankainen, M., Maukonen, J., Törrönen, R., Kolehmainen, M., Leppänen, T., Moilanen, E., Nohynek, L. J., Aura, A., et al. (2013) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.201300280 · Cited by 109 · see citing works
Self-citationThe Genus Bacteroides and Related Taxa
Shah, H. N. (1992) · Springer eBooks · doi:10.1007/978-1-4757-2191-1_34 · Cited by 103 · see citing works
Rigottier‐Gois, L., Rochet, V., Garrec, N., Suau, A., & Dore, J. M. (2003) · Systematic and Applied Microbiology · doi:10.1078/072320203322337399 · Cited by 101 · see citing works
Alakomi, H., Puupponen‐Pimiä, R., Aura, A., Helander, I. M., Nohynek, L. J., Oksman‐Caldentey, K., & Saarela, M. (2007) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf070190y · Cited by 100 · see citing works
Self-citationHippe, B., Zwielehner, J., Liszt, K. I., Laßl, C., Unger, F. M., & Haslberger, A. G. (2010) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2010.02197.x · Cited by 99 · see citing works
Zhao, J., & Cheung, P. C. K. (2011) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf200621y · Cited by 96 · see citing works
Nakamura, N., Gaskins, H. R., Collier, C. T., Nava, G. M., Rai, D., Petschow, B. W., Russell, W. M., Harris, C. L., Mackie, R. I., Wampler, J. L., et al. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02359-07 · Cited by 95 · see citing works
In vitro evaluation of the microbiota modulation abilities of different sized whole oat grain flakes
Connolly, M. L., Lovegrove, J. A., & Tuohy, K. M. (2010) · Anaerobe · doi:10.1016/j.anaerobe.2010.07.001 · Cited by 93 · see citing works
Lyra, A., Krogius-Kurikka, L., Nikkilä, J., Malinen, E., Kajander, K., Kurikka, K., Korpela, R., & Palva, A. (2010) · BMC Gastroenterology · doi:10.1186/1471-230x-10-110 · Cited by 86 · see citing works
Influence of Dietary Fibers on Fermentation in the Human Large Intestine
Ehle, F. R., Robertson, J. B., & Soest, P. J. V. (1982) · Journal of Nutrition · doi:10.1093/jn/112.1.158 · Cited by 81 · see citing works
Probiotic Intervention in the First Months of Life
Rinne, M., Kalliomäki, M. A., Salminen, S., & Isolauri, E. (2006) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/01.mpg.0000228106.91240.5b · Cited by 78 · see citing works
A longitudinal study of infant faecal microbiota during weaning
Magne, F., Hachelaf, W., Suau, A., Boudraa, G., Mangin, I., Touhami, M., BOUZIANE-NEDJADI, K., & Pochart, P. (2006) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2006.00182.x · Cited by 77 · see citing works
Total lipid content and fatty acid composition of oilseed from lesser known sweet pomegranate clones
Melgarejo, P., & Art�s, F. (2000) · Journal of the Science of Food and Agriculture · doi:10.1002/1097-0010(200008)80:10 · Cited by 77 · see citing works
The relation between diet and the gut microflora in man
Drašar, B. S., Crowther, J. S., Goddard, P., HAWKSWORTH, G. M., Hill, M. J., Peach, S., Williams, R. E. O., & Renwich, A. (1973) · Proceedings of The Nutrition Society · doi:10.1079/pns19730014 · Cited by 69 · see citing works
Urwin, H. J., Miles, E. A., Noakes, P. S., Kremmyda, L.-S., Vlachava, M., Diaper, N. D., Godfrey, K. M., Calder, P. C., Vulevic, J., & Yaqoob, P. (2013) · British Journal Of Nutrition · doi:10.1017/s0007114513003097 · Cited by 61 · see citing works
Mättö, J., van Hoek, A. H. A. M., Domig, K. J., Saarela, M., Flórez, A. B., Brockmann, E., Amtmann, E., Mayo, B., Aarts, H. J. M., & Danielsen, M. (2007) · International Dairy Journal · doi:10.1016/j.idairyj.2007.01.008 · Cited by 49 · see citing works
Self-citationUse of multivariate statistics for 16S rRNA gene analysis of microbial communities
Rudi, K., Zimonja, M., Trosvik, P., & Næs, T. (2007) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2007.06.004 · Cited by 49 · see citing works
Daly, C., & Davis, R. (1998) · Agricultural and Food Science · doi:10.23986/afsci.72862 · Cited by 49 · see citing works
Hoyles, L., & McCartney, A. L. (2009) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2009.01741.x · Cited by 45 · see citing works
Krogius-Kurikka, L., Kassinen, A., Paulin, L. G., Corander, J., Mäkivuokko, H., Tuimala, J., & Palva, A. (2009) · BMC Microbiology · doi:10.1186/1471-2180-9-68 · Cited by 44 · see citing works
The Genus Eubacterium and Related Genera
Wade, W. G. (2006) · Springer eBooks · doi:10.1007/0-387-30744-3_28 · Cited by 42 · see citing works
Rochet, V., Rigottier‐Gois, L., Rabot, S., & Dore, J. M. (2004) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2004.07.012 · Cited by 41 · see citing works
Digestion and Absorption of Dietary Protein in Man
Silk, D. B. A. (1980) · Proceedings of The Nutrition Society · doi:10.1079/pns19800009 · Cited by 35 · see citing works
Huys, G. R. B., D'Haene, K., Cnockaert, M. C., Tosi, L., Danielsen, M., Flórez, A. B., Mättö, J., Axelsson, L. T., Korhonen, J., Mayrhofer, S., et al. (2010) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00407-10 · Cited by 32 · see citing works
Songjinda, P., Nakayama, J., KUROKI, Y., TANAKA, S., Fukuda, S., Kiyohara, C., Yamamoto, T., Izuchi, K., Shirakawa, T., & Sonomoto, K. (2005) · Bioscience Biotechnology and Biochemistry · doi:10.1271/bbb.69.638 · Cited by 30 · see citing works
Ecophysiology and Taxonomy of Bacteroides and Related Taxa
Shah, H. N., & Gharbia, S. E. (1993) · Clinical Infectious Diseases · doi:10.1093/clinids/16.supplement_4.s160 · Cited by 29 · see citing works
Maukonen, J., Mättö, J., Kajander, K., Mattila, T., & Saarela, M. (2007) · International Dairy Journal · doi:10.1016/j.idairyj.2007.10.003 · Cited by 21 · see citing works
Self-citationDietary fatty acids linking postprandial metabolic response and chronic diseases
Ortega‐Gómez, A., Varela, L. M., Bermúdez, B., López, S., Abia, R., & Muriana, F. J. G. (2011) · Food & Function · doi:10.1039/c1fo10085h · Cited by 21 · see citing works
Pachikian, B. D., Neyrinck, A. M., Portois, L., Backer, F. C. D., Sohet, F. M., Hacquebard, M., Carpentier, Y., Cani, P. D., & Delzenne, N. M. (2011) · Nutrition & Metabolism · doi:10.1186/1743-7075-8-44 · Cited by 20 · see citing works
Saunier, K., Rougé, C., Lay, C., Rigottier‐Gois, L., & Dore, J. M. (2005) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2005.02.010 · Cited by 17 · see citing works
Diet and faecal flora in three dietary groups in rural northern Nigeria
Drasar, B. S., Montgomery, F., & Tomkins, A. M. (1986) · Journal of Hygiene · doi:10.1017/s0022172400062537 · Cited by 14 · see citing works
Culture-independent characterisation of human faecal flora using rRNA-targeted hybridisation probes
Dore, J. M., Gramet, G., Goderel, I., & Pochart, P. (1998) · Genetics Selection Evolution · doi:10.1051/gse:19980717 · Cited by 13 · see citing works
Flagged first, then by citations
1 of the 206 references couldn’t be matched to a known paper.
Research works printed but not linked: 1
- Wilson M (2008) Bacteriology of Humans. Oxford, UK: Blackwell Publishing.
Cited by
Sorted by citations
Food Components and Dietary Habits: Keys for a Healthy Gut Microbiota Composition
Rinninella, E., Cintoni, M., Raoul, P. C., Lopetuso, L. R., Scaldaferri, F., Pulcini, G., Miggiano, G. A. D., Gasbarrini, A., & Mele, M. C. (2019) · Nutrients · doi:10.3390/nu11102393 · Cited by 678 · see citing works
The role of Gut Microbiota in the development of obesity and Diabetes
Baothman, O. A. S., Zamzami, M. A., Taher, I., Abubaker, J. A., & Abu‐Farha, M. (2016) · Lipids in Health and Disease · doi:10.1186/s12944-016-0278-4 · Cited by 493 · see citing works
Microbiota-gut-brain axis: Modulator of host metabolism and appetite
van de Wouw, M., Schellekens, H., Dinan, T. G., & Cryan, J. F. (2017) · The Journal of Nutrition · doi:10.3945/jn.116.240481 · Cited by 461 · see citing works
Gut microbiota, inflammation and colorectal cancer
Sun, J., & Kato, I. (2016) · Genes & Diseases · doi:10.1016/j.gendis.2016.03.004 · Cited by 257 · see citing works
“Dietary fiber and resistant starch are well known to stimulate gut bacterial fermentation to generate short chain fatty acids (SCFA) as well as lactate and to increase relative abundance of bacterial groups with the relevant metabolic activities.(111) Although meat intake itself has been rarely studied, removal of ani…”
BackgroundIrritable bowel syndrome, the microbiota and the gut-brain axis
Raskov, H., Burcharth, J., Pommergaard, H.-C., & Rosenberg, J. (2016) · Gut Microbes · doi:10.1080/19490976.2016.1218585 · Cited by 243 · see citing works
Piazzon, M. C., Calduch-Giner, J. À., Fouz, B., Estensoro, I., Simó‐Mirabet, P., Puyalto, M., Karalazos, V., Palenzuela, O. R., Sitjà‐Bobadilla, A., & Pérez‐Sánchez, J. (2017) · Microbiome · doi:10.1186/s40168-017-0390-3 · Cited by 238 · see citing works
Lam, Y. Y., Ha, C. W. Y., Hoffmann, J. M. A., Oscarsson, J., Dinudom, A., Mather, T. J., Cook, D. I., Hunt, N. H., Caterson, I. D., Holmes, A. J., et al. (2015) · Obesity · doi:10.1002/oby.21122 · Cited by 223 · see citing works
The role of diet in shaping human gut microbiota
Rinninella, E., Tohumcu, E., Raoul, P. C., Fiorani, M., Cintoni, M., Mele, M. C., Cammarota, G., Gasbarrini, A., & Ianiro, G. (2023) · Best Practice & Research Clinical Gastroenterology · doi:10.1016/j.bpg.2023.101828 · Cited by 233 · see citing works
Hou, Y., Li, J., & Ying, S. (2023) · Metabolites · doi:10.3390/metabo13111166 · Cited by 225 · see citing works
Hanus, M., Parada‐Venegas, D., Landskron, G., Wielandt, A. M., Hurtado, C., Álvarez, K., Hermoso, M. A., López-Köstner, F., & la Fuente, M. D. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.612826 · Cited by 201 · see citing works
Shortt, C., Hasselwander, O., Meynier, A., Nauta, A., Fernández, E. N., Putz, P., Rowland, I., Swann, J., Türk, J., Vermeiren, J., et al. (2018) · European Journal of Nutrition · doi:10.1007/s00394-017-1546-4 · Cited by 194 · see citing works
Diet influence on the gut microbiota and dysbiosis related to nutritional disorders
Alou, M. T., Lagier, J., & Raoult, D. (2016) · Human Microbiome Journal · doi:10.1016/j.humic.2016.09.001 · Cited by 176 · see citing works
Tandon, D., Haque, M. M., Gote, M., Jain, M., Bhaduri, A., Dubey, A., & Mande, S. S. (2019) · Scientific Reports · doi:10.1038/s41598-019-41837-3 · Cited by 146 · see citing works
Alou, M. T., Million, M., Traore, S. I., Mouelhi, D., Khelaifia, S., Bachar, D., Caputo, A., Delerce, J., Brah, S., Alhousseini, D., et al. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00899 · Cited by 146 · see citing works
Linking Gut Microbiota to Colorectal Cancer
Raskov, H., Burcharth, J., & Pommergaard, H. (2017) · Journal of Cancer · doi:10.7150/jca.20497 · Cited by 151 · see citing works
Diet, the intestinal microbiota, and immune health in aging
Clements, S. J., & Carding, S. R. (2016) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2016.1211086 · Cited by 163 · see citing works
Role of hypoxia in cellular senescence
Gao, H., Nepovimová, E., Heger, Z., Valko, M., Wu, Q., Kuča, K., & Adam, V. (2023) · Pharmacological Research · doi:10.1016/j.phrs.2023.106841 · Cited by 130 · see citing works
Frame, L. A., Costa, E., & Jackson, S. A. (2019) · Nutrition Reviews · doi:10.1093/nutrit/nuz106 · Cited by 127 · see citing works
The Metabolism of Glucosinolates by Gut Microbiota
Sikorska-Zimny, K. M., & Beneduce, L. (2021) · Nutrients · doi:10.3390/nu13082750 · Cited by 91 · see citing works
Peng, L., Qu, Z., Zhang, Y., Yao, Z., Song, P., Wei, L., Zhao, G., & Yan, Z. (2019) · Food Science & Nutrition · doi:10.1002/fsn3.1291 · Cited by 87 · see citing works
Lam, Y., Maguire, S., Palacios, T., & Caterson, I. (2017) · Nutrients · doi:10.3390/nu9060602 · Cited by 86 · see citing works
Antibiotic sensitivity pattern of indigenous lactobacilli isolated from curd and human milk samples
Sharma, C., Gulati, S., Thakur, N., Singh, B. P., Gupta, S., Kaur, S., Mishra, S. K., Puniya, A. K., Gill, J. P. S., & Panwar, H. (2017) · 3 Biotech · doi:10.1007/s13205-017-0682-0 · Cited by 92 · see citing works
Gunsalus, K. T. W., Tornberg-Belanger, S. N., Matthan, N. R., Lichtenstein, A. H., & Kumamoto, C. A. (2015) · mSphere · doi:10.1128/msphere.00020-15 · Cited by 81 · see citing works
Khavandegar, A., Heidarzadeh, A., Angoorani, P., Hasani‐Ranjbar, S., Ejtahed, H., Larijani, B. A., & Qorbani, M. (2024) · BMC Medical Genomics · doi:10.1186/s12920-024-01861-3 · Cited by 80 · see citing works
Silva, M. P., Tulini, F. L., Marinho, J. F. U., Mazzocato, M. C., Martinis, E. C. P. D., Luccas, V., & Fávaro-Trindade, C. S. (2016) · LWT · doi:10.1016/j.lwt.2016.10.025 · Cited by 80 · see citing works
Tang, L., Cheng, C. Y., Sun, X., Pedicone, A. J., Mahamadzadeh, M., & Cheng, S. X. (2016) · Frontiers in Physiology · doi:10.3389/fphys.2016.00245 · Cited by 79 · see citing works
The Cytokine Network in Colorectal Cancer: Implications for New Treatment Strategies
Braumüller, H., Mauerer, B., Andris, J., Berlin, C., Wieder, T., & Kesselring, R. (2022) · Cells · doi:10.3390/cells12010138 · Cited by 74 · see citing works
Polyphenols and Intestinal Health
Martinez, K., Mackert, J. D., & McIntosh, M. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-805376-8.00018-6 · Cited by 78 · see citing works
New insights into irritable bowel syndrome: from pathophysiology to treatment
Hadjivasilis, A. (2019) · Annals of Gastroenterology · doi:10.20524/aog.2019.0428 · Cited by 71 · see citing works
Fecal Microbiota Transplantation and Other Gut Microbiota Manipulation Strategies
Quaranta, G., Guarnaccia, A., Fancello, G., Agrillo, C., Iannarelli, F., Sanguinetti, M., & Masucci, L. (2022) · Microorganisms · doi:10.3390/microorganisms10122424 · Cited by 71 · see citing works
Liang, L., Saunders, C., & Sanossian, N. (2023) · Food Science & Nutrition · doi:10.1002/fsn3.3229 · Cited by 74 · see citing works
dos Santos, A. S., de Albuquerque, T. M. R., Alves, J. L. D. B., & de Souza, E. L. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.02229 · Cited by 67 · see citing works
Costabile, G., Vetrani, C., Bozzetto, L., Giacco, R., Bresciani, L., Rio, D. D., Vitale, M., Pepa, G. D., Brighenti, F., Riccardi, G., et al. (2021) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/nqab188 · Cited by 67 · see citing works
Beyond Proteins—Edible Insects as a Source of Dietary Fiber
Kipkoech, C. (2023) · Polysaccharides · doi:10.3390/polysaccharides4020009 · Cited by 57 · see citing works
Tsitko, I. V., Wiik-Miettinen, F., Mattila, O., Rosa‐Sibakov, N., Seppänen‐Laakso, T., Maukonen, J., Nordlund, E., & Saarela, M. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20081925 · Cited by 57 · see citing works
Self-citationZheng, Y., Wu, W., Hu, G., Qiu, L., Meng, S., Song, C., Fan, L., Zhao, Z., Bing, X., & Chen, J. (2018) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2018.03.040 · Cited by 56 · see citing works
Hess, A. L., Benítez‐Páez, A., Blædel, T., Larsen, L. H., Iglesias, J. R., Madera, C., Sanz, Y., & Larsen, T. M. (2019) · European Journal of Nutrition · doi:10.1007/s00394-019-02099-x · Cited by 54 · see citing works
Jiang, H., Gallier, S., Feng, L., Han, J., & Liu, W. (2022) · Food & Function · doi:10.1039/d1fo03223b · Cited by 54 · see citing works
How Do Diet Patterns, Single Foods, Prebiotics and Probiotics Impact Gut Microbiota?
Piccioni, A., Covino, M., Candelli, M., Ojetti, V., Capacci, A., Gasbarrini, A., Franceschi, F., & Merra, G. (2023) · Microbiology Research · doi:10.3390/microbiolres14010030 · Cited by 51 · see citing works
Prebiotic Potential of a Maize-Based Soluble Fibre and Impact of Dose on the Human Gut Microbiota
Costabile, A., Deaville, E. R., Morales, A. M., & Gibson, G. R. (2016) · PLoS ONE · doi:10.1371/journal.pone.0144457 · Cited by 47 · see citing works
Mukhopadhya, I., Martin, J. C., Shaw, S., McKinley, A. J., Gratz, S. W., & Scott, K. P. (2022) · Microbiome · doi:10.1186/s40168-022-01354-4 · Cited by 47 · see citing works
Role of Dietary Flavonoid Compounds in Driving Patterns of Microbial Community Assembly
Ivey, K. L., Chan, A. T., Izard, J., Cassidy, A., Rogers, G. B., & Rimm, E. B. (2019) · mBio · doi:10.1128/mbio.01205-19 · Cited by 43 · see citing works
A critical analysis of eating disorders and the gut microbiome
Terry, S. M., Barnett, J. A., & Gibson, D. L. (2022) · Journal of Eating Disorders · doi:10.1186/s40337-022-00681-z · Cited by 40 · see citing works
Behzadi, P., Dodero, V. I., & Golubnitschaja, O. (2024) · Advances in predictive, preventive and personalised medicine · doi:10.1007/978-3-031-46891-9_15 · Cited by 41 · see citing works
Caution in studying and interpreting the lupus metabolome
Zhang, T., & Mohan, C. (2020) · Arthritis Research & Therapy · doi:10.1186/s13075-020-02264-2 · Cited by 40 · see citing works
The role of sugar-rich diet and salivary proteins in dental plaque formation and oral health
Benahmed, A. G., Gasmi, A., Dadar, M., Arshad, M., & Bjørklund, G. (2021) · Journal of Oral Biosciences · doi:10.1016/j.job.2021.01.007 · Cited by 39 · see citing works
Veselinović, A., Petrović, S., Žikić, V., Subotić, M., Jakovljevic, V. L., Jeremic, N. S., & Vučić, V. (2021) · Medicina · doi:10.3390/medicina57090893 · Cited by 38 · see citing works
Luo, Z., Liu, Y., Wang, X., Fan, F., Yang, Z., & Luo, D. (2024) · Biochemical Pharmacology · doi:10.1016/j.bcp.2024.116554 · Cited by 37 · see citing works
Liu, G., Cao, W., Jia, G., Zhao, H. Y., Chen, X., & Wang, J. (2018) · British Journal Of Nutrition · doi:10.1017/s0007114518002088 · Cited by 37 · see citing works
Noğay, N. H., & Nahikian-Nelms, M. L. (2019) · Nutritional Neuroscience · doi:10.1080/1028415x.2019.1630894 · Cited by 37 · see citing works
Wasfy, R. M., Mbaye, B., Borentain, P., Alou, M. T., Ruiz, M. L. M., Caputo, A., Andrieu, C., Armstrong, N., Million, M., & Gerolami, R. (2023) · Microorganisms · doi:10.3390/microorganisms11102437 · Cited by 34 · see citing works
Montoya, C. A., Henare, S. J., Rutherfurd, S. M., & Moughan, P. J. (2016) · Nutrition Reviews · doi:10.1093/nutrit/nuw014 · Cited by 34 · see citing works
Nambiar, R. B., Sellamuthu, P. S., & Perumal, A. B. (2018) · Food Control · doi:10.1016/j.foodcont.2018.07.024 · Cited by 34 · see citing works
Associations between Flavonoid Intakes and Gut Microbiota in a Group of Adults with Cystic Fibrosis
Li, L., & Somerset, S. M. (2018) · Nutrients · doi:10.3390/nu10091264 · Cited by 32 · see citing works
Zou, Y., Liang, N., Zhang, X., Han, C., & Nan, X. (2021) · BMC Veterinary Research · doi:10.1186/s12917-021-02911-z · Cited by 31 · see citing works
Bacterial cross talk with gut microbiome and its implications: a short review
Shastry, R. P., & Rekha, P. D. (2020) · Folia Microbiologica · doi:10.1007/s12223-020-00821-5 · Cited by 29 · see citing works
Arias, M. A., Cobo, M., Jaime‐Sánchez, P., Pastor, J., Marijuán, P. C., Pardo, J., Rezusta, A., & del Campo, R. (2017) · Journal of Functional Foods · doi:10.1016/j.jff.2017.02.023 · Cited by 29 · see citing works
Encapsulation of Polyphenols: An Effective Way To Enhance Their Bioavailability for Gut Health
Kasote, D. M., Jayaprakasha, G. K., & Patil, B. S. (2018) · ACS symposium series · doi:10.1021/bk-2018-1286.ch013 · Cited by 28 · see citing works
Human Microbiome: age-related changes and functions
Kaybysheva, V. O., Zharova, M. E., Filimendikova, K. Y., & Nikonov, E. L. (2020) · Russian Journal of Evidence-Based Gastroenterology · doi:10.17116/dokgastro2020902142 · Cited by 27 · see citing works
de Almeida, T. S., Neto, J. J. L., Filho, L. C. P. A., Marques, D. M., de Lima, R. D. C. G., Nunes, R. G. D. S., Silva, J. R. D. L., Kamdem, J. P., de Almeida, L. L., Souza, J. A. D. C. R., et al. (2020) · Drug and Chemical Toxicology · doi:10.1080/01480545.2020.1856863 · Cited by 26 · see citing works
Melekoğlu, E., & Samur, G. (2021) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2021.1996331 · Cited by 27 · see citing works
Riegelman, E., Xue, K. S., Wang, J.-S., & Tang, L. (2024) · Nutrients · doi:10.3390/nu16132041 · Cited by 29 · see citing works
The Microbiota and Malnutrition: Impact of Nutritional Status During Early Life
Gómez-Gallego, C., García‐Mantrana, I., Martínez‐Costa, C., Salminen, S., Isolauri, E., & Collado, M. C. (2019) · Annual Review of Nutrition · doi:10.1146/annurev-nutr-082117-051716 · Cited by 26 · see citing works
Chiou, W.-C., Lai, W.-H., Cai, Y.-L., Du, M.-L., Lai, H., Chen, J., Huang, H., Liu, H., & Huang, C. (2022) · Food & Function · doi:10.1039/d2fo01211a · Cited by 23 · see citing works
The microbiome and inborn errors of metabolism: Why we should look carefully at their interplay?
Colonetti, K., Roesch, L. F. W., & Schwartz, I. V. D. (2018) · Genetics and Molecular Biology · doi:10.1590/1678-4685-gmb-2017-0235 · Cited by 22 · see citing works
Personalized Medicine for Sepsis
da Silva, F. P., & Machado, M. C. C. (2015) · The American Journal of the Medical Sciences · doi:10.1097/maj.0000000000000558 · Cited by 21 · see citing works
Farrer, S. (2018) · Advances in Preventive Medicine · doi:10.1155/2018/6024747 · Cited by 21 · see citing works
Structure of Chimpanzee Gut Microbiomes across Tropical Africa
de Mesquita, C. P. B., Nichols, L. M., Gebert, M. J., Vanderburgh, C., Bocksberger, G., Lester, J. D., Kalan, A. K., Dieguez, P., McCarthy, M. S., Agbor, A., et al. (2021) · mSystems · doi:10.1128/msystems.01269-20 · Cited by 19 · see citing works
Özsoy, S., Sultanoğlu, N., & Şanlıdağ, T. (2022) · Journal of preventive medicine and hygiene · doi:10.15167/2421-4248/jpmh2022.63.2s3.2751 · Cited by 19 · see citing works
Trimigno, A., Khakimov, B., Castro-Mejía, J. L., Mikkelsen, M. S., Kristensen, M., Jespersen, B. M., & Engelsen, S. B. (2017) · Metabolomics · doi:10.1007/s11306-017-1247-2 · Cited by 19 · see citing works
do Nascimento, R. R., Pimentel, T. C., García, S., & Prudêncio, S. H. (2023) · Food Bioscience · doi:10.1016/j.fbio.2023.103128 · Cited by 18 · see citing works
Food substances alter gut resistome: Mechanisms, health impacts, and food components
Liang, Z., Liang, Z., Hu, H., Howell, K. S., Fang, Z., & Zhang, P. (2025) · Comprehensive Reviews in Food Science and Food Safety · doi:10.1111/1541-4337.70143 · Cited by 17 · see citing works
Li, X., Ren, Y., Zhang, J., Ouyang, C., Wang, C., Lu, F., & Yin, Y. (2022) · Microbiology Spectrum · doi:10.1128/spectrum.02692-21 · Cited by 16 · see citing works
Exercise, Nutrition and Gut Microbiota: Possible Links and Consequences
Costa, A. (2017) · International Journal of Sports and Exercise Medicine · doi:10.23937/2469-5718/1510069 · Cited by 17 · see citing works
Oluwagbemigun, K., Foerster, J., Watkins, C., Fouhy, F., Stanton, C., Bergmann, M. M., Boeing, H., & Nöthlings, U. (2019) · Journal of Nutrition · doi:10.1093/jn/nxz194 · Cited by 17 · see citing works
Dimitrova, M., Ivanov, G., Mihalev, K., Slavchev, A., Ivanova, I., & Vlaseva, R. (2019) · Food Science and Applied Biotechnology · doi:10.30721/fsab2019.v2.i1.57 · Cited by 16 · see citing works
Bacteria in the ageing gut: did the taming of fire promote a long human lifespan?
Danchin, A. (2018) · Environmental Microbiology · doi:10.1111/1462-2920.14255 · Cited by 16 · see citing works
Ahmed, I., Yusuf, K., Roy, B. C., Stubbs, J. R., Anant, S., Attard, T. M., Sampath, V., & Umar, S. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms23010339 · Cited by 15 · see citing works
Occupancy strongly influences faecal microbial composition of wild lemurs
Umanets, A., de Winter, I. I., IJdema, F., Ramiro‐Garcia, J., van Hooft, P., HEITKÖNIG, I. M. A., Prins, H. H. T., & Smidt, H. (2018) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiy017 · Cited by 15 · see citing works
la Fuente, M. D., MacDonald, T. T., & Hermoso, M. A. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.02775 · Cited by 15 · see citing works
Suriyaphol, P., Chiu, J. K. H., Yimpring, N., Tunsagool, P., Mhuantong, W., Chuanchuen, R., Bessarab, I. N., Williams, R. B. H., Ong, R. T., & Suriyaphol, G. (2021) · Scientific Reports · doi:10.1038/s41598-021-97586-9 · Cited by 14 · see citing works
Turner, R. B., Lehtoranta, L., Hibberd, A. A., Männikkö, S., Zabel, B., Yeung, N., Huttunen, T., Burns, F., & Lehtinen, M. J. (2021) · EClinicalMedicine · doi:10.1016/j.eclinm.2021.101224 · Cited by 13 · see citing works
Attributes of Culture Bacteria as Influenced by Ingredients That Help Treat Leaky Gut
Alemán, R. S., Paz, D., Cedillos, R., Tabora, M., Olson, D. W., & Aryana, K. J. (2023) · Microorganisms · doi:10.3390/microorganisms11040893 · Cited by 12 · see citing works
Taylor-Baer, M., & Herman, D. R. (2017) · Springer eBooks · doi:10.1007/978-3-319-47143-3_18 · Cited by 12 · see citing works
Ye, Z., Gao, Y., Yuan, J., Chen, F., Xu, P., & Liu, W. (2025) · NeuroImage · doi:10.1016/j.neuroimage.2025.121292 · Cited by 11 · see citing works
Oh, H., Smith‐Warner, S. A., Tamimi, R. M., Wang, M., Xu, X., Hankinson, S. E., Fuhrman, B. J., Ziegler, R. G., & Eliassen, A. H. (2015) · Journal of Nutrition · doi:10.3945/jn.115.212779 · Cited by 10 · see citing works
Culturable gut bacteria lack Escherichia coli in children with phenylketonuria
Al-Zyoud, W. A., Nasereddin, A., Aljarajrah, H., & Saket, M. M. (2019) · New Microbes and New Infections · doi:10.1016/j.nmni.2019.100616 · Cited by 10 · see citing works
Sewunet, T., Razavi, M., Rosenborg, S., Camporeale, A., Nowak, M., Melnick, D., Gasink, L. B., Eckburg, P. B., Critchley, I. A., Nord, C. E., et al. (2024) · The Lancet Microbe · doi:10.1016/s2666-5247(23)00360-9 · Cited by 9 · see citing works
Álvarez‐Herms, J. (2024) · Microorganisms · doi:10.3390/microorganisms12061138 · Cited by 9 · see citing works
Shinde, T., Brooks, J. D., & Sun‐Waterhouse, D. (2015) · International Journal of Food Science & Technology · doi:10.1111/ijfs.12759 · Cited by 9 · see citing works
Isoflavones: toxicological aspects and efficacy
Esch, H. L., & Lehmann, L. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-821038-3.00045-8 · Cited by 9 · see citing works
Wasfy, R. M., Mbaye, B., Borentain, P., Alou, M. T., Ruiz, M. L. M., Caputo, A., Andrieu, C., Armstrong, N., Raoult, D., Million, M., et al. (2023) · Research Square · doi:10.21203/rs.3.rs-3066403/v1 · Cited by 9 · see citing works
Gut Microbiota Throughout the Lifespan
Ishiguro, E. E., Haskey, N., & Campbell, K. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-810541-2.00003-8 · Cited by 8 · see citing works
Diet-Induced Alterations in Gut Microbiota Composition and Function
Rinninella, E., Cintoni, M., Raoul, P. C., Ianiro, G., Laterza, L., Ponziani, F. R., Pulcini, G., Gasbarrini, A., & Mele, M. C. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-819265-8.00035-8 · Cited by 9 · see citing works
Vegetarian Diets and the Microbiome
Orlich, M. J., Segovia‐Siapco, G., & Jung, S. M. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-803968-7.00024-1 · Cited by 8 · see citing works
Probiotics, Microbiome and the Concept of Cross-Feeding
Torres-Miranda, A., Vega, M. A., & Garrido, D. A. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-819265-8.00055-3 · Cited by 7 · see citing works
Klančič, T., Black, A. M., & Reimer, R. A. (2021) · Pediatric Obesity · doi:10.1111/ijpo.12847 · Cited by 7 · see citing works
In vitro approach to evaluate the fermentation pattern of inulin-rich food in obese individuals
Kalala, G., Kambashi, B., Taminiau, B., Schroyen, M., Everaert, N., Beckers, Y., Richel, A., Njeumen, P., Pachikian, B. D., Neyrinck, A. M., et al. (2019) · British Journal Of Nutrition · doi:10.1017/s0007114519002915 · Cited by 6 · see citing works
Klančič, T., Laforest‐Lapointe, I., Wong, J., Choo, A. C., Nettleton, J. E., Chleilat, F., Arrieta, M., & Reimer, R. A. (2021) · Biomedicines · doi:10.3390/biomedicines9010066 · Cited by 6 · see citing works
Vázquez-Frías, R., Icaza-Chávez, M. E., Ruiz-Castillo, M. A., Amieva‐Balmori, M., Argüello-Arévalo, G. A., Carmona-Sánchez, R., Bello, M. V. F., Hernández-Rosiles, V., Hernández-Vez, G., Vera, I., et al. (2020) · Revista de Gastroenterología de México · doi:10.1016/j.rgmx.2020.07.005 · Cited by 10 · see citing works
- Authors
- Maukonen, J., & Saarela, M.
- Affiliations
- VTT Technical Research Centre of Finland (FI)
- Corresponding author
- Maukonen, Johanna
- Venue
- Proceedings of The Nutrition Society
- Publisher
- Cambridge University Press (CUP)
- Published
- 2014-08-26
- Volume
- 74
- Issue
- 1
- Pages
- 23-36
- ISSN
- 0029-6651 (ISSN-L)
- 1475-2719
- OpenAlex
- W2156255024
- Cited by
- 177
- References
- 206
- Citations by year
- 2026: 7 · 2025: 13 · 2024: 15 · 2023: 15 · 2022: 26 · 2021: 22 · 2020: 10 · 2019: 17 · 2018: 14 · 2017: 17 · 2016: 14 · 2015: 6 · 2014: 1
- FWCI
- 1.19
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Proceedings of The Nutrition Society (publishedVersion)
- PubMed (publishedVersion)
- Funders
- European Commission (222639, 222720)
- FP7 Food, Agriculture and Fisheries, Biotechnology
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Nursing › Nutrition and Dietetics › Microbial Metabolites in Food Biotechnology
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Keywords
- gut microbiota, diet, dietary intervention, high-fat diet, high-protein diet, prebiotics, probiotics, polyphenols, non-digestible carbohydrates, host-microbe interactions, host metabolism, antibiotic therapy, commensal bacteria
- MeSH terms
- Adult, Diet, Feces, Humans, Nutritional Physiological Phenomena, Gastrointestinal Tract, Microbiota
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review