Cited by 857Functional Brain Connectivity StudiesAdvanced Neuroimaging Techniques and ApplicationsComplex Network Analysis Techniques

A Weighted and Directed Interareal Connectivity Matrix for Macaque Cerebral Cortex

Open access
Markov, N. T., Ercsey-Ravasz, M. M., Ribeiro Gomes, A. R., Lamy, C., Magrou, L., Vezoli, J., Misery, P., Falchier, A. +14 more·2014·Cerebral Cortex

Abstract

Retrograde tracer injections in 29 of the 91 areas of the macaque cerebral cortex revealed 1,615 interareal pathways, a third of which have not previously been reported. A weight index (extrinsic fraction of labeled neurons [FLNe]) was determined for each area-to-area pathway. Newly found projections were weaker on average compared with the known projections; nevertheless, the 2 sets of pathways had extensively overlapping weight distributions. Repeat injections across individuals revealed modest FLNe variability given the range of FLNe values (standard deviation <1 log unit, range 5 log units). The connectivity profile for each area conformed to a lognormal distribution, where a majority of projections are moderate or weak in strength. In the G29 × 29 interareal subgraph, two-thirds of the connections that can exist do exist. Analysis of the smallest set of areas that collects links from all 91 nodes of the G29 × 91 subgraph (dominating set analysis) confirms the dense (66%) structure of the cortical matrix. The G29 × 29 subgraph suggests an unexpectedly high incidence of unidirectional links. The directed and weighted G29 × 91 connectivity matrix for the macaque will be valuable for comparison with connectivity analyses in other species, including humans. It will also inform future modeling studies that explore the regularities of cortical networks.

AI snapshot

Written from the paper’s full text.

TL;DR

Retrograde tracer injections in 29 of 91 macaque cortical areas identified 1,615 interareal pathways, including 579 newly found projections, and yielded weighted directed connectivity matrices. The G29×29 subgraph was dense (66%) with an unexpectedly high incidence of unidirectional links (33%), and FLNe connection weights followed lognormal distributions.

Key findings

  • Across 29 injected areas, 1,615 cortical pathways were found, of which 579 were newly found projections (NFP); NFP were weaker on average than known projections but overlapped extensively, with 43% of NFP moderate and 2% strong.
  • Repeat injections showed FLNe variability with SD <1 log unit over a 5-log-unit range; single-injection FLNe values predicted the multi-injection mean within a factor of 2.7 (1 SD) in about 68% of cases, and 95% confidence values included 98.5% of observed FLNe means from 14 repeats.
  • Connectivity profiles were well fit by lognormal distributions; in the G29×29 edge-complete subgraph, 536 directed links existed out of 812 possible, giving graph density 66%, with 214 bidirectional pairs, 108 unidirectional pairs, and 84 unconnected pairs.
  • Dominating set analysis found one area pair (8l, 7m) receiving projections from all 91 areas, giving a minimum dominating set size of 2; in-degrees in G29×91 ranged from 26 to 87 with a mean of 57.4.

Methods

  • Single fluorescent retrograde tracer injections (fast blue and diamidino yellow) were made in 28 macaques (27 *Macaca fascicularis*, 1 *Macaca mulatta*), yielding 39 injections in 29 cortical areas; localization used a 91-area M132 atlas mapped to the F99 surface atlas.
  • Brains were sectioned at 40 μm, 1 in 3 sections retained, and 1 in 2 sections examined at 240 μm intervals across the cortical gray matter; FLNe was computed as labeled neurons in a source area relative to total labeled neurons excluding intrinsic neurons, with strong >−2, moderate −2 to −4, and sparse <−4 log10 FLNe.
  • Analyses included negative binomial modeling of FLNe variability, lognormal order-statistic fits, graph density, dominating set analysis, and reciprocity/asymmetry assessment.

Limitations

  • The paper states that some injections had minor white matter encroachment, which may have caused contamination by fibers of passage, though it considers this unlikely to be a major confound; alternative parcellation schemes could affect results, and most weights come from single injections.
  • The paper states that areal heterogeneity may confound apparent unidirectional connections, and reciprocity could only be tested using injections in different animals; positive confirmation suggested a minimum of 10% of pathways are genuinely unidirectional.
  • Evident from the text: only 29 of 91 areas were injected, so FIN density was inferred by assuming non-injected nodes have the same average in-degree as injected nodes; connection strengths are reported for *M. fascicularis* except in one case, and may vary in other macaque species.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.1093/cercor/bhs270

Cites

118 of 118 references verified0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

0 of 81 cited sources checked · 0 supported · 0 flagged

  • Findingown data

    Repeat injections across individuals revealed modest FLNe variability given the range of FLNe values, with standard deviation less than 1 log unit and range 5 log units.

    “Repeat injections across individuals revealed modest FLNe variability given the range of FLNe values (standard deviation <1 log unit, range 5 log units).”
    Quote in the paperNot a substantial claim
  • Findingown data

    Dominating set analysis of the smallest set of areas that collects links from all 91 nodes of the G29 × 91 subgraph confirms the dense 66% structure of the cortical matrix.

    “Analysis of the smallest set of areas that collects links from all 91 nodes of the G29 × 91 subgraph (dominating set analysis) confirms the dense (66%) structure of the cortical matrix.”
    Quote in the paperSubstantial claim
  • Findingown data

    For area 10, 15 projections had a mean FLNe value exceeding 10−2, classified as strong.

    “Fifteen projections had a mean FLNe value exceeding 10−2, which we classify as a strong projection.”
    Quote in the paperNot a substantial claim
  • Findingown data

    One-third (10% of the total) of potentially unidirectional pathways were shown to originate from corresponding locations within the connected cortical areas.

    “Our analysis of 1615 connections, including 36% that we consider to be NFP, reveals a high density of cortico-cortical connectivity (66%) and an unexpectedly high incidence (33%) of potentially unidirectional pathways, of which one-third (10% of the total) were shown to originate from corresponding locations within the connected cortical areas.”
    Quote in the paperNot a substantial claim
  • Findingown data

    For 4 input areas (45A, 31, 7A, and DP), the range of FLNe values exceeds 2 orders of magnitude.

    “However, for 4 input areas (45A, 31, 7A, and DP) the range exceeds 2 orders of magnitude.”
    Quote in the paperNot a substantial claim
  • The quote only partly states this claim. 2
  • May combine two claims. 72
  • Classified as probably not a substantial claim. 40
  • The quote only partly states this claim.

    Findingown data

    The G29 × 29 subgraph indicates an unexpectedly high incidence of unidirectional (nonreciprocal) pathways, about 33% of potentially unidirectional pathways.

    “The G29 × 29 subgraph suggests an unexpectedly high incidence of unidirectional links.”
    • Also stated in: § Introduction · hedged
      “In contrast, our analysis of a 29 × 29 subset of cortical areas indicates an unexpectedly high incidence of unidirectional (nonreciprocal) pathways.”
    • Also stated in: § Introduction · plain
      “Our analysis of 1615 connections, including 36% that we consider to be NFP, reveals a high density of cortico-cortical connectivity (66%) and an unexpectedly high incidence (33%) of potentially unidirectional pathways, of which one-third (10% of the total) were shown to originate from corresponding locations within the connected cortical areas.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Newly found projections were weaker on average than known projections, but the two sets had extensively overlapping weight distributions.

    “Newly found projections were weaker on average compared with the known projections; nevertheless, the 2 sets of pathways had extensively overlapping weight distributions.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Retrograde tracer injections in 29 of the 91 areas of the macaque cerebral cortex revealed 1,615 interareal pathways, about one-third of which had not previously been reported.

    “Retrograde tracer injections in 29 of the 91 areas of the macaque cerebral cortex revealed 1,615 interareal pathways, a third of which have not previously been reported.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    The connectivity profile for each area conformed to a lognormal distribution, in which a majority of projections are moderate or weak in strength.

    “The connectivity profile for each area conformed to a lognormal distribution, where a majority of projections are moderate or weak in strength.”
    Quote in the paperNot a substantial claim
  • May combine two claims. The quote only partly states this claim.

    Findingown data

    In the G29 × 29 interareal subgraph, two-thirds of the connections that can exist do exist, giving a high density of cortico-cortical connectivity of 66%.

    “In the G29 × 29 interareal subgraph, two-thirds of the connections that can exist do exist.”
    • Also stated in: § Introduction · plain
      “Our analysis of 1615 connections, including 36% that we consider to be NFP, reveals a high density of cortico-cortical connectivity (66%) and an unexpectedly high incidence (33%) of potentially unidirectional pathways, of which one-third (10% of the total) were shown to originate from corresponding locations within the connected cortical areas.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    For the 67 areas containing label from at least one area 10 injection, 50 (75%) were labeled by all 4 injections, 7 by 3 injections, 4 by 2 injections, and 6 by only a single injection; 24 areas lacked connections in all 4 cases.

    “For the 67 areas containing label from at least one injection, 50 (75%) were labeled by all 4 injections, 7 by 3 injections, 4 by 2 injections and 6 by only a single injection; 24 areas lacked connections to the injection area in all 4 cases.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    The best-fitting negative binomial curve for area 10 is closer to a geometric distribution, as was seen for injections of areas V1, V2, and V4.

    “It is closer to a geometric distribution (blue line), as was seen for injections of areas V1, V2, and V4 (Markov et al. 2011).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Markov et al. 2011 source

      Not checked in the free run.

  • May combine two claims.

    Findingown data

    For an exemplar single V1 injection, the difference between the observed single-case value and the mean of 5 injections is generally quite small and in every case lies within the 95% confidence interval predicted by the negative binomial distribution.

    “The difference between the observed single-case value and the mean of 5 injections (blue circles) is generally quite small and for this exemplar injection in every case lies within the 95% confidence interval predicted by the negative binomial distribution.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    FLNe values obtained from single injections are usually within a factor of 3 and highly likely to be within a factor of 10 of the mean value.

    “Altogether, this analysis indicates that FLNe values obtained from single injections are usually within a factor of 3 and highly likely to be within a factor of 10 of the mean value.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    The maximum difference between the single V1 injection and the mean of 5 injections is 0.99 log unit, corresponding to a 9.5-fold difference.

    “The maximum difference is 0.99 log unit, corresponding to a 9.5-fold difference between the single-subject and group-average results.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Of the 12 cases with probabilities below 0.05, 3 are consistent and had an observed mean exceeding 7 neurons.

    “Of the 12 cases with probabilities below 0.05, 3 are consistent and had an observed mean exceeding 7 neurons.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Most NFP to F2 are sparse, but several (areas 12, MB, and PGa) are moderate in strength.

    “Quantification of each pathway (see Supplementary Table 6) indicates that most NFP to F2 are indeed sparse, but several (areas 12, MB, and PGa) are moderate in strength.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    NFP from the F2 injection are located in temporal (9), prefrontal (4), and frontal (1) regions.

    “NFP are located in temporal (9), prefrontal (4), and frontal (1) regions (blue areal labels in Fig. 6).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Fifty-one projections were identified from the F2 injection, of which 14 are considered NFP.

    “Fifty one projections were identified from this injection, of which 14 we consider NFP.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    The strongest connections tend to be from areas close to the injection, but there are exceptions.

    “The strongest connections tend to be from areas close to the injection, but there are exceptions.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    NFP are rare in the immediate vicinity of the injected area, but are common at both intermediate and distant locations and often form a near-continuous belt of areas.

    “NFP are rare in the immediate vicinity of the injected area, but are common at both intermediate and distant locations and often form a near-continuous belt of areas, as in Figure 7.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingcitation

    The injection in case 27 was in the hindlimb representation and did not lead to labeling in areas V6A, 32, and PIP, whereas more lateral and ventral injections in the arm representation do label these areas.

    “For example, the injection in case 27 was in the hindlimb representation and did not lead to labeling in areas V6A, 32, and PIP, whereas more lateral and ventral injections (in the arm representation) do label these areas (Johnson et al. 1996; Matelli et al. 1998; Caminiti et al. 1999; Petrides and Pandya 1999; Tanne-Gariepy et al. 2002).”
    Quote in the paperSubstantial claim0 of 3 sources checked
    • cites Johnson et al. 1996

      Not checked in the free run.

    • cites Matelli et al. 1998

      Not checked in the free run.

    • cites Caminiti et al. 1999

      Not checked in the free run.

  • May combine two claims.

    Findingown data

    In general, the areas providing inputs to any given target area form a group that covers at least half of the cortical surface and in some cases more than three quarters of the hemisphere.

    “In general, the areas providing inputs to any given target area form a group that covers at least half of the cortical surface (e.g. area 24c) and in some cases more than 3 quarters of the hemisphere (e.g. area 7A).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    126 reciprocal pathways were categorized as symmetric and 88 as asymmetric.

    “We categorized 126 reciprocal pathways as symmetric and 88 as asymmetric (see Supplementary Table 4).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Of the 108 unidirectional connections, 4 are classified as strong and 36 as medium.

    “Of the 108 unidirectional connections, 4 are classified as strong and 36 as medium (see the Materials and Methods section).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    The 29 × 91 connectivity matrix is asymmetric, in contrast to many connectivity matrices obtained using neuroimaging methods that cannot distinguish the directionality of connections.

    “The matrix is asymmetric, in contrast to many connectivity matrices obtained using neuroimaging methods that cannot distinguish the directionality of connections.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    The curves in Figure 8 illustrate common features in the connectivity profiles, including close tracking of single FLNe values to the lognormal distribution and progressive widening of the 95% confidence interval with decreasing FLNe values.

    “The curves shown in Figure 8 illustrate common features in the connectivity profiles including just how closely the single FLNe values track the lognormal distribution as well as the progressive widening of the 95% confidence interval with decreasing FLNe values.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    For the target areas in each cortical region, NFP constituted a substantial fraction of the total number of connections: limbic 13%, prefrontal 40%, frontal 30%, parietal 30%, temporal 43%, and occipital 37%.

    “For the target areas in each cortical region, the NFP constituted a substantial fraction of the total number of connections (limbic 13%, prefrontal 40%, frontal 30%, parietal 30%, temporal 43%, and occipital 37%).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Known connections are on average stronger than NFP, but the two populations overlap extensively.

    “Known connections are on average stronger than NFP, but the 2 populations overlap extensively.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    In the G29 × 29 edge-complete matrix, connectivity was bidirectional between 214 projection pairs, unidirectional for 108 pairs, and unconnected for 84 pairs.

    “In our G29 × 29 edge-complete matrix, the connectivity was bidirectional between 214 projection pairs, unidirectional for 108 pairs, and unconnected for 84 pairs (see Supplementary Table 4).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    For very low FLNe values, NFP correspond up to 90% of the population, but constitute a decreasing fraction of the source areas with increasing FLNe.

    “For very low FLNe values, NFP correspond up to 90% of the population, but constitute a decreasing fraction of the source areas with increasing FLNe.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    For area triples there are 69 dominating sets (1.88% of 3654), and for sets of 4 areas there are 1,978 (8.33% of 23,751).

    “For area triples there are 69 dominating sets (1.88% of 3654), and for sets of 4 areas, there are 1,978 (8.33% of 23 751).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    The G29 × 29 graph has 536 binary directed links from the maximum possible 812, and is strongly interconnected with a graph density of 0.66 (66%).

    “The G29 × 29 graph has M= 536 (binary) directed links from the maximum possible of N(N−1) = 812, and therefore, it is strongly interconnected, with a graph density of ρ= 0.66 (66%).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    The in-degrees of the G29 × 91 graph range from 26 to 87, and their distribution is concentrated around the mean.

    “The in-degrees of the G29 × 91 graph (i.e. the number of source areas projecting to each of 29 target areas, Fig. 12) range from 26 to 87 with a mean of ; their distribution (right side of figure) is concentrated around the mean.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    The in-degree distribution is inconsistent with a scale-free graph, as is the fact that slightly increasing the size of dominating sets to include 3, 4, and more nodes quickly increases their number.

    “The in-degree distribution (Fig. 12) is “inconsistent” with a scale free graph, as is the fact that slightly increasing the size of dominating sets to include 3, 4, and more nodes quickly increases their number.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    One pair of areas (8l, 7m) receives projections from all 91 areas, revealing an MDS size of 2.

    “One pair of areas (8l, 7m) receives projections from all 91 areas, revealing an MDS size of 2.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    The median number of estimated extrinsic neurons per hemisphere labeled by one repeat injection is 187,000 (interquartile range 98,000-280,000), giving a lower limit to the reliability of the FLNe of <6 × 10−5.

    “The median number of estimated extrinsic neurons per hemisphere labeled by one of our repeat injections is 187,000 (interquartile range: 98,000–280,000), which gives a lower limit to the reliability of the FLNe of <6 × 10−5.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).

    Findingnone given

    Most NFP are long-distance connections.

    “Another is that most NFP are long-distance connections that may have been missed in studies that did not closely scrutinize distant cortical regions.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingcitation

    This consistency was previously shown for central visual field injections in areas V1, V2, and V4 and is extended in the present study to area 10, a higher order area with about twice as many inputs as the early visual areas.

    “This was previously shown for central visual field injections in areas V1, V2, and V4 (Markov et al. 2011) and is extended in the present study to area 10, a higher order area with about twice as many inputs as the early visual areas (Fig. 11).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Markov et al. 2011 source

      Not checked in the free run.

  • May combine two claims.

    Findingown data

    The NFP are sparser than the known connections, but overall their weight distribution overlaps with that of the known connections.

    “While the NFP are sparser than the known connections, overall their weight distribution overlaps with that of the known connections (Fig. 9).”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The areal parcellation/atlas used is consistent and objective enough to define connections and compare across injections.
  • May combine two claims.

    Findingown data

    Repeat injections in areas V1, V2, V4, and 10 showed that 58% of NFP are present after each repeat injection and are therefore classified as consistent.

    “Further, repeat injections in areas V1, V2, V4, and 10 showed that 58% of NFP are present after each repeat injection and are therefore classified as consistent.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The areal parcellation/atlas used is consistent and objective enough to define connections and compare across injections.
  • May combine two claims.

    Findingown data

    Projections having more than 10 neurons on average occurred consistently in repeat injections, with just 2 exceptions, and therefore can be considered stable projections.

    “Projections having more than 10 neurons on average occurred consistently in repeat injections, with just 2 exceptions, and therefore can be considered stable projections.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    If the analysis were restricted to previously known connections, the estimated density for the entire hemisphere would decrease to 45%, similar to that predicted for the visual system alone by Felleman and Van Essen (1991) and Jouve et al. 1998.

    “If the analysis were restricted to previously known connections, the estimated density for the entire hemisphere would decrease to 45%, similar to that predicted for the visual system alone by Felleman and Van Essen (1991) and Jouve et al. 1998.”
    Quote in the paperSubstantial claim0 of 2 sources checked
    • cites Felleman and Van Essen (1991) source

      Not checked in the free run.

    • cites Jouve et al. 1998

      Not checked in the free run.

    • Rests on an assumption: The areal parcellation/atlas used is consistent and objective enough to define connections and compare across injections.
  • May combine two claims.

    Findingcitation

    NFP significantly span greater distances and more frequently link areas in different regions than do the known connections.

    “In this respect, we found that NFP signficantly span greater distances and more frequently link areas in different regions than do the known connections (Markov et al. in preparation).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Markov et al. in preparation

      Not checked in the free run.

  • May combine two claims.

    Interpretationown data

    The negative binomial and lognormal distributions evidently reflect important regularities of neocortical organization.

    “Here, we demonstrate that both features, the negative binomial and lognormal distributions, generalize to other cortical areas and evidently reflect important regularities of neocortical organization.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    Cortico-cortical connections are directed as well as weighted.

    “Just as with many other real-world networks (Boccaletti et al. 2006), cortico-cortical connections are directed as well as weighted.”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Boccaletti et al. 2006 source

      Not checked in the free run.

  • Classified as probably not a substantial claim.

    Premisecitation

    A seminal analysis across studies concluded that between-animal variability of a given pathway can exceed 2 orders of magnitude.

    “A seminal paper analyzed data across studies and concluded that between-animal variability of a given pathway can exceed 2 orders of magnitude (Scannell et al. 2000).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Scannell et al. 2000

      Not checked in the free run.

  • Classified as probably not a substantial claim.

    Study design and conductnone given

    Only projections that previously were neither depicted nor listed in publications or databases were classified as newly found projections.

    “Here, only projections that previously were neither depicted nor listed in publications or databases (cf. see Supplementary Tables 1 and 6) are classified as NFP.”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim.

    Study design and conductown data

    To identify connections not previously reported, the authors assessed the connections reported in 119 published studies of connectivity.

    “To identify connections to the 29 target areas that were not previously reported, we assessed the connections reported in 119 published studies of connectivity (see Supplementary Tables 1 and 6).”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisenone given

    Subsequent studies using improved tracers, more systematic methods, and different parcellation schemes revealed numerous additional pathways.

    “Subsequent studies using improved tracers, more systematic methods, and different parcellation schemes revealed numerous additional pathways.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    The veracity of labeled neurons was checked by senior team members.

    “The veracity of labeled neurons were checked by senior team members (H.K., C.D., P.M., N.T.M., and C.L.).”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim. May combine two claims.

    Study design and conductnone given

    Injections were included in the analysis if they showed little or no involvement of the underlying white matter and were restricted to a single cortical area.

    “Injections were included in our analysis if they showed little or no involvement of the underlying white matter and were restricted to a single cortical area.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    An early systematic study compiled the interareal connectivity of 32 visual areas in the macaque and reported 305 known projections out of 992 possible pathways, giving a link density of 32% for the visual cortex.

    “In the resultant 32 × 32 connectivity matrix, these authors reported 305 known projections out of 992 possible pathways, giving a link density (or graph density) of 32% for the visual cortex, that is, one-third of the maximum possible connections among visual areas were reported to exist.”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Felleman and Van Essen 1991 source

      Not checked in the free run.

  • Classified as probably not a substantial claim. May combine two claims.

    Study design and conductnone given

    When exploring for labeled neurons, 1 section in 2 (at 240 μm intervals) was examined throughout the cortical gray matter, which enabled the identification of many newly found projections.

    “Importantly, when exploring for labeled neurons, 1 section in 2 (i.e. at 240 μm intervals) was examined throughout the cortical gray matter, which enabled the identification of many NFP.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    The latter study also identified many newly found projections, especially with areas outside the classical visual system.

    “The latter study also identified many newly found projections (NFP), especially with areas outside the classical visual system.”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Markov et al. 2011 source

      Not checked in the free run.

  • May combine two claims.

    Premisecitation

    Indirect methods of assessing cortical connectivity using diffusion imaging and resting state functional connectivity are insensitive to the direction of connections and are limited in estimating the weight of the underlying anatomical connections.

    “Indirect methods of assessing cortical connectivity using diffusion imaging and resting state functional connectivity are insensitive to the direction of connections and are limited in estimating the weight of the underlying anatomical connections (Hagmann et al. 2008).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Hagmann et al. 2008 source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    A recent hemisphere-wide analysis involving retrograde tracers injected into areas V1, V2, and V4 showed interindividual variability typically less than an order of magnitude.

    “In contrast, a recent hemisphere-wide analysis involving retrograde tracers injected into areas V1, V2, and V4 showed greater consistency, with interindividual variability typically less than an order of magnitude (Markov et al. 2011).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Markov et al. 2011 source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Not all sections were scored when mapping heavily labeled areas.

    “However, not all sections were scored when mapping heavily labeled areas.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisecitation

    While cortico-cortical pathways vary widely in weight, surprisingly little quantitative data are available on quantitative connectivity profiles in nonhuman primates.

    “While it is well known that cortico-cortical pathways vary widely in their weight (connection strength), surprisingly little data are available on quantitative connectivity profiles in nonhuman primates (Falchier et al. 2002; Barbas et al. 2005; Burman et al. 2011; Markov et al. 2011).”
    Quote in the paperSubstantial claim0 of 3 sources checked
    • cites Falchier et al. 2002

      Not checked in the free run.

    • cites Barbas et al. 2005

      Not checked in the free run.

    • cites Burman et al. 2011

      Not checked in the free run.

  • Classified as probably not a substantial claim. May combine two claims.

    Premisecitation

    Previous studies reported that the vast majority of pathways between cortical areas are reciprocal; Felleman and Van Essen identified only 5 unidirectional pathways out of 126 explicitly tested pairs.

    “Felleman and Van Essen (1991) identified only 5 unidirectional pathways out of the 126 explicitly tested pairs.”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Felleman and Van Essen (1991) source

      Not checked in the free run.

  • Classified as probably not a substantial claim.

    Study design and conductown data

    Complete scanning of the hemisphere made it possible to determine the full set of ipsilateral cortical source areas projecting to each injected area.

    “Complete scanning of the hemisphere made it possible to determine the full set of ipsilateral cortical source areas projecting to each injected area.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Comparison of variability of repeat injections in V1, V2, V4, and 10 with variability when areas are grouped into larger regions shows only a modest reduction in variability, suggesting that areal delineation is not the major source of variability.

    “Comparisons of the slopes in Figure 3C,D show only a modest reduction in variability, suggesting that areal delineation is not the major source of variability.”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim.

    Premisecitation

    Increasing the sampling rate reduces the variability in estimates of the FLNe.

    “Elsewhere we have shown that increasing the sampling rate reduces the variability in estimates of the FLNe (Vezoli et al. 2004).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Vezoli et al. 2004 source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Area F2 is located anterior to F1 (area 4), extends rostrally up to 3 mm in front of the genu of the arcuate sulcus, and is bordered ventrally by the spur of the arcuate sulcus.

    “It is located anterior to F1 (area 4), extends rostrally up to 3 mm in front of the genu of the arcuate sulcus and is bordered ventrally by the spur of the arcuate sulcus (Matelli et al. 1998).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Matelli et al. 1998

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Area F2 is located in the dorso-caudal part of Brodmann's premotor area, area 6.

    “Area F2 is located in the dorso-caudal part of Brodmann's premotor area, area 6.”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Matelli et al. 1998

      Not checked in the free run.

  • May combine two claims.

    Study design and conductown data

    The availability of 29 injections analyzed using the same parcellation scheme enabled testing for the existence of all pathways and generating an edge-complete graph, G29 × 29.

    “The availability of 29 injections analyzed using the same parcellation scheme enabled us to test for the existence of all pathways and to generate an edge-complete graph, which we call G29 × 29.”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim. May combine two claims.

    Study design and conductown data

    The curves in each plot are based only on the mean and SDs of the log10(FLNe) values and the number of projections; no free parameters were used to constrain the shape of the curves.

    “The curves in each plot are based only on the mean and SDs of the log10 (FLNe) values and the number of projections; no free parameters were used to constrain the shape of the curves.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductreasoning

    The evidence for the existence of the known connections is generally relatively good, insofar as most projections are reported in several studies.

    “The evidence for the existence of the known connections is generally relatively good, insofar as most projections are reported in several studies.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisenone given

    Some cortical areas have nonuniform connectivity across their extent, and this could impact assessments of reciprocity.

    “As already noted, some cortical areas have nonuniform connectivity across their extent, and this could impact assessments of reciprocity.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    Foveal V1 and V4 are reciprocally connected, whereas peripheral V4 projects to V1 but does not receive a projection from V1.

    “For example, whereas foveal V1 and V4 are reciprocally connected (Zeki 1978; Zeki 1980; Van Essen et al. 1986), peripheral V4 projects to V1 but does not receive a projection from V1 (Kennedy and Bullier 1985; Perkel et al. 1986).”
    Quote in the paperNot a substantial claim0 of 3 sources checked
    • cites Zeki 1978 source

      Not checked in the free run.

    • cites Zeki 1980

      Not checked in the free run.

    • cites Van Essen et al. 1986

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    There are many alternative parcellation schemes for the macaque cortex, some of which are finer-grained than the 91-area parcellation used.

    “For instance, there are many alternative parcellation schemes for the macaque cortex, some of which are finer-grained than the 91-area parcellation we used.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Study design and conductown data

    When combined with close section intervals and full hemisphere scanning, the tracers revealed many NFP for each area injected and enabled estimation of connection weight for each projection.

    “When combined with close section intervals and full hemisphere scanning, these tracers revealed many NFP for each area injected and enabled estimation of connection weight for each projection.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Altogether, this provides a reasonably accurate portrayal of the connectivity profiles for the 29 injected areas and provides G29 × 29 and G29 × 91 subgraphs constructed with consistent criteria.

    “Altogether, this provides a reasonably accurate portrayal of the connectivity profiles for the 29 injected areas and provides G29 × 29 and G29 × 91 subgraphs constructed with consistent criteria.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    The many deviations from the diagonal suggest that some areas having similar input profiles have distinctly different output profiles, and vice versa.

    “However, the many deviations from the diagonal suggest that some areas having similar input profiles have distinctly different output profiles, and vice versa.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Study design and conductown data

    Most injection sites were entirely restricted to the cortical gray matter; in a few there was minor encroachment into immediately subjacent white matter.

    “While most of the injection sites were entirely restricted to the cortical gray matter, in a few there was minor encroachment into immediately subjacent white matter (see the Materials and Methods section and Supplementary Fig. 6).”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim. May combine two claims.

    Premisenone given

    Nearly a thousand of these projections had been previously described, but published data on interareal connection weights has been extremely limited.

    “While nearly a thousand of these projections had been previously described, published data on interareal connection weights has been extremely limited.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Study design and conductcitation

    The study chose an alternative strategy of sampling histological sections at high density and across the entire hemisphere, capturing as much data as feasible and reducing variability related to brain morphology.

    “We chose an alternative strategy that includes sampling histological sections at high density and across the entire hemisphere, thereby capturing as much data as are feasible and also reducing variability related to brain morphology (Falchier et al. 2002; Vezoli et al. 2004; Markov et al. 2011).”
    Quote in the paperSubstantial claim0 of 3 sources checked
    • cites Falchier et al. 2002

      Not checked in the free run.

    • cites Vezoli et al. 2004 source

      Not checked in the free run.

    • cites Markov et al. 2011 source

      Not checked in the free run.

  • May combine two claims.

    Study design and conductcitation

    The retrograde tracers used show high sensitivity and restricted uptake zones, making it possible to verify their restriction to a single cortical area.

    “We used retrograde tracers that show high sensitivity and restricted uptake zones, the latter making it possible to verify their restriction to a single cortical area (for a detailed discussion of the relative merits of the tracers used here, see Supplementary material in Markov et al. 2011).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Markov et al. 2011 source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing).

    Interpretationnone given

    Our analysis provides valuable inferences regarding statistical characteristics of the entire cortical connectivity graph.

    “Our analysis also provides valuable inferences regarding statistical characteristics of the entire cortical connectivity graph.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationreasoning

    As more injections add links but not new nodes, they can only enhance these strong domination effects, confirming that the FIN is a dense graph in terms of binary connectivity.

    “As more injections add links but not new nodes, they can only enhance these strong domination effects, confirming that the FIN is indeed a dense graph when considered in terms of binary connectivity.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationreasoning

    Assuming that non-injected nodes have the same average in-degree as the 29 injected nodes leads to a predicted FIN density of 62%, which is of the same order as the density of G29 × 29.

    “We lack data on the in-links to nodes that were not injected, but we can assume that they are characterized by the same average in-degree as the 29 injected nodes. Assuming for the FIN (G91 × 91) leads to the prediction (62%), which is of the same order as the density for the edge-complete graph G29 × 29.”
    Quote in the paperNot a substantial claim
    • The authors state this as an assumption: Nodes that were not injected have the same average in-degree as the 29 injected nodes.
  • May combine two claims.

    Study design and conductreasoning

    Both G29 × 91 and G29 × 29 contain complete information about the status of their edges and would not be influenced by injections into additional areas elsewhere in the cortex.

    “Both G29 × 91 and G29 × 29 contain complete information about the status of their edges and would not be influenced by injections into additional areas elsewhere in the cortex.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Interpretationreasoning

    In such cases, a small proportion of labeled neurons may have arisen from fibers of passage.

    “In such cases, a small proportion of labeled neurons may have arisen from fibers of passage.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S4 (based). May combine two claims.

    Premisenone given

    Existing databases do not provide reliable estimates of the density of the network of cortical areas, nor has there been a concerted effort to extrapolate from existing data to the connectivity of the full interareal network.

    “Existing databases do not provide reliable estimates of the density of the network of cortical areas, nor has there been a concerted effort to extrapolate from the existing data to the connectivity of the full interareal network (FIN).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Study design and conductcitation

    The M132 parcellation has been mapped to the macaque F99 atlas, which contains accurate surface maps for 15 other published parcellations, enabling detailed cross-parcellation comparisons.

    “Nevertheless, our M132 parcellation has been mapped to the macaque F99 atlas, which contains accurate surface maps for 15 other published parcellations (Van Essen, Glasser, Dierker, Harwell 2011), thereby enabling detailed cross-parcellation comparisons.”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Van Essen, Glasser, Dierker, Harwell 2011

      Not checked in the free run.

  • Classified as probably not a substantial claim. May combine two claims.

    Premisereasoning

    Few experimental studies have directly tested unidirectionality because it is technically not easy.

    “However, few experimental studies have directly tested unidirectionality because it is technically not easy.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationreasoning

    Shifting borders could reduce the NFP, but it would mean abandoning a consistent atlas with an objective parcellation for one where area dimensions are dictated by labeling patterns.

    “So while shifting borders could reduce the NFP, it would mean that we abandon a consistent atlas with an objective parcellation for one where area dimensions are dictated by labeling patterns.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The areal parcellation/atlas used is consistent and objective enough to define connections and compare across injections.
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Interpretationreasoning

    The connection strength values might vary for other macaque species, including the rhesus macaque.

    “We also note that the connection strengths reported here are (except in one case, see Supplementary Table 2) specifically for M. fascicularis; the values might vary for other macaque species, including the widely studied rhesus macaque (M. mulatta).”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Interpretationnone given

    Some of the variability may be attributable to imperfect delineation of areal boundaries for the various source areas.

    “Some of the variability may be attributable to imperfect delineation of areal boundaries for the various source areas.”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim.

    Study design and conductnone given

    We scrutinized the entire hemisphere for labeled cells at high magnification and at close section intervals (240 μm).

    “One factor is that we scrutinized the entire hemisphere for labeled cells at high magnification and at close section intervals (240 µm).”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Previous reports provided scant evidence of unidirectional connectivity in the cortex.

    “Previous reports provided scant evidence of unidirectional connectivity in the cortex (Felleman and Van Essen 1991).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Felleman and Van Essen 1991 source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).

    Interpretationnone given

    Some connections reported as NFP might reflect cross-study differences in the designation of areal boundaries in individual cases.

    “Finally, as already noted, some connections we report as NFP might reflect cross-study differences in the designation of areal boundaries in individual cases.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationown data

    There are genuine individual differences in connection strength that, along with the lognormal distribution, are a characteristic feature of interareal pathways.

    “For the above reasons, we consider it highly likely that there are genuine individual differences in connection strength that along with the lognormal distribution is a characteristic feature of interareal pathways.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Interpretationcitation

    The caution about internal heterogeneity also applies to other topographically organized sensory-motor areas and might apply to higher-order areas.

    “This cautionary note also applies to other topographically organized sensory-motor areas, and it might apply to higher-order areas as well (Burman et al. 2011).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Burman et al. 2011

      Not checked in the free run.

  • May combine two claims.

    Premisecitation

    The error in testing reciprocity cannot at present be overcome given that diffusion tensor imaging and tractography do not detect direction and existing tracing techniques, including BDA and labeled amino acids, show bidirectional transport.

    “However, this error cannot at present be overcome given that diffusion tensor imaging and tractography do not detect direction and existing tracing techniques, including BDA and labeled amino acids, show bidirectional transport (LeVay and Sherk 1983; da Costa and Martin 2011).”
    Quote in the paperSubstantial claim0 of 2 sources checked
    • cites LeVay and Sherk 1983

      Not checked in the free run.

    • cites da Costa and Martin 2011

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Low cortical matrix densities have been reported in estimates based on large data sets compiled across studies, with Young (1993) reporting a density of ∼15%.

    “Low cortical matrix densities have been reported in estimates based on large data sets compiled across studies (e.g. Young 1993, who reported a density of ∼15%).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Young 1993

      Not checked in the free run.

  • May combine two claims.

    Interpretationreasoning

    A reduction in connectivity could be associated with lower weights of long-range pathways with respect to local connectivity or with a reduction in the number of pathways.

    “A reduction in connectivity could be associated with lower weights of long-range pathways with respect to local connectivity or with a reduction in the number of pathways (at least in relation to the total number of area-to-area combinatorial possibilities).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Graph theoretic analysis allowed us to infer that the binary FIN is dense and that this is therefore a characteristic feature of the macaque cortex.

    “Further graph theoretic analysis allowed us to infer that the binary FIN is dense and that this is therefore a characteristic feature of the macaque cortex.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The areal parcellation/atlas used is consistent and objective enough to define connections and compare across injections.
  • Classified as probably not a substantial claim.

    Interpretationcitation

    The combination of weight and distance of connections may be important for understanding large-scale temporal dynamics.

    “The combination of weight “and” distance of connections may be important for understanding large-scale temporal dynamics (Honey et al. 2007).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Honey et al. 2007

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Increasing brain size has been suggested to result in decreased connectivity.

    “Increasing brain size has been suggested to result in decreased connectivity (Ringo 1991).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Ringo 1991

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Interpretationcitation

    The wide range of densities might reflect either differences in thresholding or technical difficulties.

    “The wide range of densities might reflect either differences in thresholding or technical difficulties (Jones 2010; Jbabdi and Johansen-Berg 2011; Behrens and Sporns 2012; Van Essen and Ugurbil 2012).”
    Quote in the paperNot a substantial claim0 of 3 sources checked
    • cites Jones 2010

      Not checked in the free run.

    • cites Jbabdi and Johansen-Berg 2011

      Not checked in the free run.

    • cites Behrens and Sporns 2012

      Not checked in the free run.

  • May combine two claims.

    Interpretationcitation

    High densities are necessarily accompanied by a short average path length across the cortex and will impact on large-scale models of cortical networks.

    “High densities are necessarily accompanied by a short average path length across the cortex and will impact on large-scale models of cortical networks (Young 1993; Sporns et al. 2000; Honey et al. 2007).”
    Quote in the paperNot a substantial claim0 of 3 sources checked
    • cites Young 1993

      Not checked in the free run.

    • cites Sporns et al. 2000

      Not checked in the free run.

    • cites Honey et al. 2007

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    The human cerebral cortex probably contains a maximum of 150-200 cortical areas compared with the estimated maximum of 130-140 in the macaque.

    “The human cerebral cortex is 9-fold greater in surface area than the macaque and probably contains a maximum of 150–200 cortical areas compared with the estimated maximum of 130–140 in the macaque (Van Essen, Glasser, Dierker, Harwell 2011; Van Essen, Glasser, Dierker, Harwell, Coalson 2011).”
    Quote in the paperNot a substantial claim0 of 2 sources checked
    • cites Van Essen, Glasser, Dierker, Harwell 2011

      Not checked in the free run.

    • cites Van Essen, Glasser, Dierker, Harwell, Coalson 2011

      Not checked in the free run.

  • Classified as probably not a substantial claim. May combine two claims.

    Premisecitation

    While there is evidence for a good correlation between functional connectivity and strong short-distance connections, this is not the case for the more numerous long-distance connections.

    “For instance, while there is evidence for a good correlation between functional connectivity and strong short-distance connections, this is not the case for the more numerous long-distance connections (Honey et al. 2009; Adachi et al. 2012).”
    Quote in the paperSubstantial claim0 of 2 sources checked
    • cites Honey et al. 2009 source

      Not checked in the free run.

    • cites Adachi et al. 2012 source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    The human cerebral cortex is 9-fold greater in surface area than the macaque.

    “The human cerebral cortex is 9-fold greater in surface area than the macaque and probably contains a maximum of 150–200 cortical areas compared with the estimated maximum of 130–140 in the macaque (Van Essen, Glasser, Dierker, Harwell 2011; Van Essen, Glasser, Dierker, Harwell, Coalson 2011).”
    Quote in the paperNot a substantial claim0 of 2 sources checked
    • cites Van Essen, Glasser, Dierker, Harwell 2011

      Not checked in the free run.

    • cites Van Essen, Glasser, Dierker, Harwell, Coalson 2011

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Interpretationcitation

    Sparse long-distance connections, conceivably via nonlinear phenomena such as "contraction dynamics", may have disproportionate effects relative to the far more dense intrinsic and intermediate-distance connections.

    “Sparse long-distance connections, conceivably via nonlinear phenomena such as “contraction dynamics”, may have disproportionate effects relative to the far more dense intrinsic and intermediate-distance connections (Wang and Slotine 2005).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Wang and Slotine 2005

      Not checked in the free run.

  • Classified as probably not a substantial claim.

    Premisecitation

    A recent modeling study showed that including anatomical directionality and weight led to more realistic biologically modeled brain dynamics.

    “A recent modeling study showed that including anatomical directionality and weight led to more realistic biologically modeled brain dynamics (Knock et al. 2009).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Knock et al. 2009

      Not checked in the free run.

102 of 102
  • The authors state this as an assumption.

    A negative binomial model with similar dispersion is valid for injections in other cortical regions.

    “By extension, we assume that a negative binomial model with similar dispersion should be valid for injections in other regions.”
  • The paper relies on this without support.

    Use of an alternative macaque cortical parcellation would have had little effect on the main conclusion.

    “However, we believe that use of an alternative parcellation would have had little effect on our main conclusion (see the Discussion section).”
  • The authors state this as an assumption.

    Nodes that were not injected have the same average in-degree as the 29 injected nodes.

    “We lack data on the in-links to nodes that were not injected, but we can assume that they are characterized by the same average in-degree as the 29 injected nodes.”
  • The paper relies on this without support.

    The areal parcellation/atlas used is consistent and objective enough to define connections and compare across injections.

    “This underscores the importance of accurately specifying the location of the injection sites and the labeled neurons, in the context of a consistent database as provided in the present study (cf. Fig. 7 and see Supplementary Figs 2 and 4).”
    “So while shifting borders could reduce the NFP, it would mean that we abandon a consistent atlas with an objective parcellation for one where area dimensions are dictated by labeling patterns.”
4 of 4

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • For mammals, tracer injection studies have mapped the axonal projections between brain regions of mouse and macaque.

    “For mammals, tracer injection studies have mapped the axonal projections between brain regions of mouse74,75 and macaque76.”

    From Neuronal wiring diagram of an adult brain (2024) · cites this paper as [76]

  • In primate cortex, single tracer injections reliably predict mean values obtained from repeated injections into the same source.

    “In primate cortex, single tracer injections were also found to reliably predict mean values obtained from repeated injections into the same source24.”

    From A mesoscale connectome of the mouse brain (2014) · cites this paper as [24]

  • This extends previously reported findings that cortico-cortical connections follow a lognormal distribution in primate and mouse cortex to the entire mouse brain.

    “This extends previously reported findings that cortico-cortical connections follow a lognormal distribution in the primate24,25 and mouse cortex26 to the entire mouse brain.”

    From A mesoscale connectome of the mouse brain (2014) · cites this paper as [24]

  • Connectivity strengths span a greater than 10^5-fold range across the brain.

    “First, connectivity strengths span a greater than 105-fold range across the brain (Extended Data Fig. 7), suggesting that quantitative descriptions of connectivity must be considered for understanding neural network properties24.”

    From A mesoscale connectome of the mouse brain (2014) · cites this paper as [24]

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

  • Mean in-degree does not match the reported pathway total

    Minor

    Across 29 target areas, 1,615 pathways imply a mean of about 55.7 source areas per target, rather than the 57.4 reported for the in-degree distribution.

    Reported 57.4 · recomputed 55.689655

  • Visual-cortex link density is miscalculated

    Minor

    The stated 305 pathways out of 992 possible pathways give a density of 30.7%, not 32%.

    Reported 32 · recomputed 30.745968

2 of 2

Cites

Flagged first, then by citations

Research works printed but not linked: 2

  1. Kulli, 1991, Inverse domination in graphs, Nat Acad Sci Lett, 14, 473
  2. Van Essen, 2005, Surface-based atlases and a database of cortical structure and function, 369

Cited by

Sorted by citations

Authors
Markov, N. T., Ercsey-Ravasz, M. M., Ribeiro Gomes, A. R., Lamy, C., Magrou, L., Vezoli, J., Misery, P., Falchier, A., Quilodran, R., Gariel, M. A., Sallet, J., Gamanut, R., Huissoud, C., Clavagnier, S., Giroud, P., Sappey-Marinier, D., Barone, P., Dehay, C., Toroczkai, Z., Knoblauch, K., Van Essen, D. C., & Kennedy, H.
Affiliations
  • Lyon 1 Université (FR)
  • University of Notre Dame (US)
Corresponding author
Kennedy, H.
Venue
Cerebral Cortex
Published
2012-09-25
Volume
24
Issue
1
Pages
17-36
ISSN
  • 1047-3211 (ISSN-L)
  • 1460-2199
OpenAlex
W2112151839
Cited by
857
References
118
Citations by year
2026: 43 · 2025: 74 · 2024: 70 · 2023: 75 · 2022: 58 · 2021: 77 · 2020: 87 · 2019: 64 · 2018: 65 · 2017: 61 · 2016: 63 · 2015: 50 · 2014: 36 · 2013: 32 · 2012: 2
FWCI
19.67
Type
journal article
Language
en
Open access
Licence
cc-by-nc
Locations
  • Cerebral Cortex (publishedVersion, cc-by-nc)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by-nc)
  • PubMed Central (publishedVersion, cc-by-nc)
  • PubMed (publishedVersion)
  • HAL (submittedVersion, other-oa)
  • Max Planck Institute for Plasma Physics (submittedVersion)
  • MPG.PuRe (Max Planck Society) (submittedVersion)
Funders
  • National Science Foundation (0826958)
  • Agence Nationale de la Recherche (ANR-05)
  • National Institutes of Health
  • National Institute of Mental Health (R01 MH60974, R01MH060974)
Topics
  • Life Sciences › Neuroscience › Cognitive Neuroscience › Functional Brain Connectivity Studies
  • Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Advanced Neuroimaging Techniques and Applications
  • Physical Sciences › Physics and Astronomy › Statistical and Nonlinear Physics › Complex Network Analysis Techniques
Keywords
retrograde tracing, directed connectivity, lognormal distribution
MeSH terms
Animals, Brain Mapping, Cerebral Cortex, Image Processing, Computer-Assisted, Macaca fascicularis, Macaca mulatta, Models, Neurological, Neural Pathways, Diffusion Magnetic Resonance Imaging, Neuronal Tract-Tracers, Neuroimaging

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-10.

Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-10.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

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