Cited by 242SARS-CoV-2 and COVID-19 ResearchAnimal Virus Infections StudiesSARS-CoV-2 detection and testing

An Alphavirus -derived replicon RNA vaccine induces SARS-CoV-2 neutralizing antibody and T cell responses in mice and nonhuman primates

Open access
Erasmus, Jesse H., Khandhar, Amit P., O’Connor, Megan A., Walls, Alexandra C., Hemann, Emily A., Murapa, Patience, Archer, Jacob, Leventhal, Shanna +14 more·2020·Science Translational Medicine

Abstract

-derived replicon RNA vaccine candidate, repRNA-CoV2S, encoding the SARS-CoV-2 spike (S) protein. The RNA replicons were formulated with lipid inorganic nanoparticles (LIONs) that were designed to enhance vaccine stability, delivery, and immunogenicity. We show that a single intramuscular injection of the LION/repRNA-CoV2S vaccine in mice elicited robust production of anti-SARS-CoV-2 S protein IgG antibody isotypes indicative of a type 1 T helper cell response. A prime/boost regimen induced potent T cell responses in mice including antigen-specific responses in the lung and spleen. Prime-only immunization of aged (17 months old) mice induced smaller immune responses compared to young mice, but this difference was abrogated by booster immunization. In nonhuman primates, prime-only immunization in one intramuscular injection site or prime/boost immunizations in five intramuscular injection sites elicited modest T cell responses and robust antibody responses. The antibody responses persisted for at least 70 days and neutralized SARS-CoV-2 at titers comparable to those in human serum samples collected from individuals convalescing from COVID-19. These data support further development of LION/repRNA-CoV2S as a vaccine candidate for prophylactic protection against SARS-CoV-2 infection.

AI snapshot

Written from the paper’s full text.

TL;DR

A prime-only alphavirus replicon RNA vaccine encoding SARS-CoV-2 spike, formulated with lipid inorganic nanoparticles (LION/repRNA-CoV2S), induced neutralizing antibodies and T cell responses in mice and pigtail macaques. The vaccine was immunogenic in aged mice and generated macaque neutralizing titers in the range of human convalescent sera, without challenge data.

Key findings

  • In C57BL/6 mice, a single intramuscular dose of 10 or 1 μg LION/repRNA-CoV2S induced 100% seroconversion by day 14, with mean anti-S IgG concentrations of 200 and 109 μg/ml, respectively; pseudovirus neutralizing IC50 titers were 1:643 and 1:226. A 0.1 μg dose gave partial seroconversion (2/5 at day 14, 4/5 by day 28). After boost, anti-S IgG reached 1517, 937, and 312 μg/ml for 10, 1, and 0.1 μg groups.
  • In aged BALB/c mice, 17-month-old mice had significantly lower anti-S IgG after prime than 2- and 8-month-old mice, but post-boost responses approached younger groups; LION/repRNA-CoV2S induced IgG2a:IgG1 ratios >1 in all age groups, indicating Th1-biased responses.
  • In pigtail macaques, a 250 μg prime-only dose (n=3) induced seroconversion by day 10, anti-S IgG of 48, 51, and 61 μg/ml by day 42, and pseudovirus IC50 titers of 1:472, 1:108, and 1:149 by day 42. Mean PRNT80 against SARS-CoV-2/WA/2020 was 1:211 at day 42; a 50 μg prime/boost group (n=2) reached mean PRNT80 1:176 after boost. All 5 macaques had mean PRNT80 1:197, not significantly different from 7 convalescent humans (1:518, P=0.27).
  • Macaques developed T cell responses to S protein by day 28, directed mostly toward S1 and RBD; no adverse reactions were observed at injection sites, though 1 animal had mild azotemia at day 14.

Methods

  • Vaccine design: codon-optimized full-length SARS-CoV-2 spike (Wuhan-Hu-1 positions 21,536–25,384) fused to a C-terminal v5 tag was cloned into a Venezuelan equine encephalitis virus TC-83 replicon; repRNA was mixed 1:1 with LION, a cationic squalene emulsion containing superparamagnetic iron oxide nanoparticles and DOTAP.
  • Animal studies: C57BL/6 and BALB/c mice (n=5/group) received intramuscular doses of 10, 1, or 0.1 μg; pigtail macaques received 250 μg prime-only (n=3, 5 injection sites) or 50 μg prime/boost (n=2). Immunogenicity was measured by anti-S IgG ELISA, pseudovirus neutralization, PRNT80 against wild-type SARS-CoV-2/WA/2020, IFN-γ ELISpot, and intracellular cytokine staining.
  • Analysis: group comparisons used one-way ANOVA with Tukey’s test, Student’s t test, Mann-Whitney U test, or Wilcoxon test; significance was p<0.05. Mouse group sizes were based on power analyses; macaque group sizes were limited by animal availability; no blinding was used.

Limitations

  • Stated by the paper: conclusions are drawn in the absence of challenge data, from a limited number of animals, and at time points where T cell responses showed great variability; larger studies are needed to evaluate safety, kinetics, durability, and protection, including absence of immune enhancement of disease.
  • Stated by the paper: the 250 μg macaque dose was given concurrently across five injection sites, so it cannot be ruled out that immunogenicity and safety would differ with a single bolus injection; larger group sizes are needed to confirm the comparison with human convalescent titers.
  • Evident from the text: macaques were five adult males only, no blinding was used, and the macaque immunogenicity experiment was performed once; no viral challenge was performed to test protection.

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Integrity signals

Registry

Crossref · 10.1126/scitranslmed.abc9396

Cites

70 of 70 references verified0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

18 of 28 cited sources checked · 6 supported · 0 flagged · accuracy not yet measured

  • Premisecitation

    Human neutralizing antibodies protected mice challenged with SARS-CoV and MERS-CoV.

    “previous reports have shown that human neutralizing antibodies protected mice challenged with SARS-CoV (12–14) and Middle East respiratory syndrome (MERS)-CoV (15)”
    Quote in the paperSubstantial claim2 of 4 sources checked
    • cites [12] Menachery V. D., Yount B. L. J. Jr., Sims A. C., Debbink K., Agnihothram S. S., Gralinski L. E., Graham R. L., Scobey T., Plante J. A., Royal S. R., Swanstrom J., Sheahan T. P., Pickles R. J., Corti D., Randell S. H., Lanzavecchia A., Marasco W. A., Baric R. S., SARS-like WIV1-CoV poised for human emergence. Proc. Natl. Acad. Sci. U.S.A. 113, 3048– 3053 (2016). 10.1073/pnas.1517719113 26976607 PMC4801244 source
    • cites [13] Rockx B., Corti D., Donaldson E., Sheahan T., Stadler K., Lanzavecchia A., Baric R., Structural basis for potent cross-neutralizing human monoclonal antibody protection against lethal human and zoonotic severe acute respiratory syndrome coronavirus challenge. J. Virol. 82, 3220– 3235 (2008). 10.1128/JVI.02377-07 18199635 PMC2268459 source
    • cites [14] Traggiai E., Becker S., Subbarao K., Kolesnikova L., Uematsu Y., Gismondo M. R., Murphy B. R., Rappuoli R., Lanzavecchia A., An efficient method to make human monoclonal antibodies from memory B cells: Potent neutralization of SARS coronavirus. Nat. Med. 10, 871– 875 (2004). 10.1038/nm1080 15247913 PMC7095806 source
    • cites [15] Corti D., Zhao J., Pedotti M., Simonelli L., Agnihothram S., Fett C., Fernandez-Rodriguez B., Foglierini M., Agatic G., Vanzetta F., Gopal R., Langrish C. J., Barrett N. A., Sallusto F., Baric R. S., Varani L., Zambon M., Perlman S., Lanzavecchia A., Prophylactic and postexposure efficacy of a potent human monoclonal antibody against MERS coronavirus. Proc. Natl. Acad. Sci. U.S.A. 112, 10473– 10478 (2015). 10.1073/pnas.1510199112 26216974 PMC4547275 source
  • Premisecitation

    Protection against SARS-CoV-2 is thought to be mediated by neutralizing antibodies against the S protein.

    “Protection is thought to be mediated by neutralizing antibodies against the S protein (7, 8)”
    Quote in the paperSubstantial claim2 of 2 sources checked
    • cites [7] Walls A. C., Xiong X., Park Y.-J., Tortorici M. A., Snijder J., Quispe J., Cameroni E., Gopal R., Dai M., Lanzavecchia A., Zambon M., Rey F. A., Corti D., Veesler D., Unexpected Receptor Functional Mimicry Elucidates Activation of Coronavirus Fusion. Cell 176, 1026– 1039.e15 (2019). 10.1016/j.cell.2018.12.028 30712865 PMC6751136 source

      The Introduction (page not provided) calls the S glycoprotein the main target of neutralizing antibodies and describes antibodies from SARS-CoV and MERS-CoV survivors. The paper does not address SARS-CoV-2 or establish that these antibodies mediate protection against it. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
    • cites [8] Pinto D., Park Y.-J., Beltramello M., Walls A. C., Tortorici M. A., Bianchi S., Jaconi S., Culap K., Zatta F., De Marco A., Peter A., Guarino B., Spreafico R., Cameroni E., Case J. B., Chen R. E., Havenar-Daughton C., Snell G., Telenti A., Virgin H. W., Lanzavecchia A., Diamond M. S., Fink K., Veesler D., Corti D., Structural and functional analysis of a potent sarbecovirus neutralizing antibody. bioRxiv (2020). 10.1101/2020.04.07.023903 source
  • Premisecitation

    mRNA and DNA vaccines may not be able to induce protective efficacy in humans after a single immunization because they typically require multiple administrations over an extended period.

    “However, mRNA and DNA vaccines may not be able to induce protective efficacy in humans after a single immunization since, similar to inactivated and recombinant subunit protein vaccines, they typically require multiple administrations over an extended period of time to become effective (19).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [19] Shang W., Yang Y., Rao Y., Rao X., The outbreak of SARS-CoV-2 pneumonia calls for viral vaccines. Vaccines (Basel) 5, 18 (2020). 32194995 PMC7060195 source

      The paper says subunit vaccines require multiple booster shots, and Table 1 reports lower immune responses in humans for DNA vaccines. It does not say that both DNA and mRNA vaccines typically require multiple administrations over an extended period, or that a single dose cannot provide protective efficacy in humans. The indexed copy provides section labels but no page numbers. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
  • Premisecitation

    In rhesus macaques immunized with DNA vaccine candidates, titers between 1:60 and 1:200 correlated with complete protection from disease.

    “titers between 1:60 and 1:200 correlated with complete protection from disease.”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [53] Yu J., Tostanoski L. H., Peter L., Mercado N. B., McMahan K., Mahrokhian S. H., Nkolola J. P., Liu J., Li Z., Chandrashekar A., Martinez D. R., Loos C., Atyeo C., Fischinger S., Burke J. S., Slein M. D., Chen Y., Zuiani A., N Lelis F. J., Travers M., Habibi S., Pessaint L., Van Ry A., Blade K., Brown R., Cook A., Finneyfrock B., Dodson A., Teow E., Velasco J., Zahn R., Wegmann F., Bondzie E. A., Dagotto G., Gebre M. S., He X., Jacob-Dolan C., Kirilova M., Kordana N., Lin Z., Maxfield L. F., Nampanya F., Nityanandam R., Ventura J. D., Wan H., Cai Y., Chen B., Schmidt A. G., Wesemann D. R., Bari source

      The Immune correlates of vaccine-induced protection section reports higher neutralizing-antibody titers in completely protected than partially protected vaccinated macaques; it defines complete protection as no detectable sgmRNA after challenge. The paper does not identify titers of 1:60 to 1:200 as a range associated with complete protection. The titers of 74 and 170 reported in Construction and immunogenicity are group medians, not protection thresholds (pages not specified in our copy). (LLM, conf=0.88)

      Experimental — accuracy not yet measured
  • Findingown data

    repRNA-CoV2S efficiently expressed the v5-tagged S protein in BHK cells.

    “Using immunofluorescence and Western blot we demonstrated efficient expression of the v5-tagged S protein in BHK cells (Fig. 1B,C).”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim. 12
  • May combine two claims. 30
  • The quote only partly states this claim. 2
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    The SARS-CoV-2 Spike protein mediates binding of coronaviruses to ACE2 on the surface of various cell types including epithelial cells of the pulmonary alveolus.

    “The S protein mediates binding of coronaviruses to angiotensin converting enzyme 2 (ACE2) on the surface of various cell types including epithelial cells of the pulmonary alveolus (4–6).”
    Quote in the paperNot a substantial claim2 of 3 sources checked
    • cites [4] Hamming I., Timens W., Bulthuis M. L. C., Lely A. T., Navis G., van Goor H., Tissue distribution of ACE2 protein, the functional receptor for SARS coronavirus. A first step in understanding SARS pathogenesis. J. Pathol. 203, 631– 637 (2004). 10.1002/path.1570 15141377 PMC7167720 source
    • cites [5] Letko M., Marzi A., Munster V., Functional assessment of cell entry and receptor usage for SARS-CoV-2 and other lineage B betacoronaviruses. Nat. Microbiol. 5, 562– 569 (2020). 10.1038/s41564-020-0688-y 32094589 PMC7095430 source

      The Results (‘Receptor usage of SARS-CoV-2’; page not provided) report that a spike chimera containing the SARS-CoV-2 receptor-binding domain entered cells expressing human ACE2. The paper does not establish ACE2 binding on pulmonary alveolar epithelial cells. Its Main section also identifies a different receptor for MERS-CoV, so the ACE2 statement does not apply to coronaviruses generally. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
    • cites [6] Walls A. C., Park Y.-J., Tortorici M. A., Wall A., McGuire A. T., Veesler D., Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein. Cell 181, 281– 292.e6 (2020). 10.1016/j.cell.2020.02.058 32155444 PMC7102599 source

      The Introduction and Results section “ACE2 Is an Entry Receptor for SARS-CoV-2” establish that SARS-CoV-2 spike binds ACE2 and can mediate entry into ACE2-expressing cells. The same Results section identifies ACE2 at the surface of type II pneumocytes—alveolar epithelial cells—but makes that statement about SARS-CoV, not SARS-CoV-2. The cited paper therefore does not directly establish SARS-CoV-2 spike binding on those lung cells. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    repRNA acts as its own adjuvant, eliciting more robust immune responses after a single dose relative to conventional mRNA which typically requires multiple, 1,000-fold higher doses.

    “As a result, repRNA acts as its own adjuvant, eliciting more robust immune responses after a single dose, relative to conventional mRNA which typically requires multiple, 1,000-fold higher doses (29).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [29] Vogel A. B., Lambert L., Kinnear E., Busse D., Erbar S., Reuter K. C., Wicke L., Perkovic M., Beissert T., Haas H., Reece S. T., Sahin U., Tregoning J. S., Self-Amplifying RNA Vaccines Give Equivalent Protection against Influenza to mRNA Vaccines but at Much Lower Doses. Mol. Ther. 26, 446– 455 (2018). 10.1016/j.ymthe.2017.11.017 29275847 PMC5835025 source

      The Discussion (page unavailable) says self-amplifying RNA provides additional immune stimuli, consistent with the adjuvant-like part of the claim. But the Results report equivalent protection at a 64-fold lower dose, not a 1,000-fold lower dose, and Figure 1 describes a prime-boost regimen for both RNA vaccines, not a single dose of self-amplifying RNA versus multiple doses of conventional mRNA. (LLM, conf=0.91)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    A recent study indicates SARS-CoV-2-specific T cell responses may be associated with better recovery from COVID-19.

    “A recent study indicates SARS-CoV-2-specific T cell responses may be associated with better recovery from COVID-19 (57).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [57] Grifoni A., Weiskopf D., Ramirez S. I., Mateus J., Dan J. M., Moderbacher C. R., Rawlings S. A., Sutherland A., Premkumar L., Jadi R. S., Marrama D., de Silva A. M., Frazier A., Carlin A. F., Greenbaum J. A., Peters B., Krammer F., Smith D. M., Crotty S., Sette A., Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals. Cell 181, 1489– 1501.e15 (2020). 10.1016/j.cell.2020.05.015 32473127 PMC7237901 source

      The Results (CD4+ and CD8+ T Cell Responses; page unavailable) report SARS-CoV-2-specific T cell responses in recovered COVID-19 patients. The study did not compare patients with better and worse recovery, so it does not establish an association between those responses and better recovery. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Findingown data

    LION/repRNA-CoV2S elicited modest but detectable T cell responses in macaques, consistent with previous studies of SARS-CoV-2 S-targeted DNA and live viral vector vaccines tested in nonhuman primates.

    “Our findings demonstrate that LION/repRNA-CoV2S elicited modest but detectable T cell responses in macaques (Fig. 5), an outcome that is consistent with previous studies of SARS-CoV-2 S-targeted DNA and live viral vector vaccines tested in nonhuman primates (53, 58).”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [53] Yu J., Tostanoski L. H., Peter L., Mercado N. B., McMahan K., Mahrokhian S. H., Nkolola J. P., Liu J., Li Z., Chandrashekar A., Martinez D. R., Loos C., Atyeo C., Fischinger S., Burke J. S., Slein M. D., Chen Y., Zuiani A., N Lelis F. J., Travers M., Habibi S., Pessaint L., Van Ry A., Blade K., Brown R., Cook A., Finneyfrock B., Dodson A., Teow E., Velasco J., Zahn R., Wegmann F., Bondzie E. A., Dagotto G., Gebre M. S., He X., Jacob-Dolan C., Kirilova M., Kordana N., Lin Z., Maxfield L. F., Nampanya F., Nityanandam R., Ventura J. D., Wan H., Cai Y., Chen B., Schmidt A. G., Wesemann D. R., Bari source
    • cites [58] N. Van Doremalen, T. Lambe, A. Spencer, S. Belij-rammerstorfer, J. N. Purushotham, J. R. Port, V. Avanzato, T. Bushmaker, M. Ulaszewska, F. Feldmann, E. R. Allen, H. Sharpe, J. Schulz, M. Holbrook, A. Okumura, K. Meade-white, C. Bissett, C. Gilbride, B. N. Williamson, R. Rosenke, D. Long, A. Ishwarbhai, R. Kailath, L. Rose, S. Morris, C. Powers, J. Lovaglio, P. W. Hanley, D. Scott, G. Saturday, E. De Wit, C. Sarah, V. J. Munster, ChAdOx1 nCoV-19 vaccination prevents SARS-CoV-2 pneumonia in rhesus macaques. bioRxiv 10.1101/2020.05.13.093195 (2020). source
  • May combine two claims.

    Premisecitation

    In rhesus macaques, IC50 titers as low as 1:8 were associated with protection from re-infection, and IC50 titers as low as 1:50 were associated with reduced viral load and protection from lung pathology.

    “In the former report, IC50 titers as low as 1:8 were associated with protection from re-infection while in the latter, IC50 titers as low as 1:50 were associated with reduced viral load and protection from lung pathology.”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [51] L. Bao, W. Deng, H. Gao, C. Xiao, J. Liu, J. Xue, Q. Lv, J. Liu, P. Yu, Y. Xu, F. Qi, Y. Qu, F. Li, Z. Xiang, H. Yu, S. Gong, M. Liu, G. Wang, S. Wang, Z. Song, W. Zhao, Y. Han, L. Zhao, X. Liu, Q. Wei, C. Qin, Reinfection could not occur in SARS-CoV-2 infected rhesus macaques, bioRxiv, 2020.03.13.990226 (2020). source

      The ‘former report’ is this paper; the ‘latter’ finding is attributed to a different report and is not assessed here. In ‘SARS-CoV-2-infection protect monkeys from reinfection’ (page unavailable), the paper reports no detectable viral load after rechallenge and suggests neutralizing antibodies might protect against reinfection. Our copy does not establish the specific IC50 titer of 1:8; the Table 1 text is garbled. (LLM, conf=0.82)

      Experimental — accuracy not yet measured
    • cites [52] Gao Q., Bao L., Mao H., Wang L., Xu K., Yang M., Li Y., Zhu L., Wang N., Lv Z., Gao H., Ge X., Kan B., Hu Y., Liu J., Cai F., Jiang D., Yin Y., Qin C., Li J., Gong X., Lou X., Shi W., Wu D., Zhang H., Zhu L., Deng W., Li Y., Lu J., Li C., Wang X., Yin W., Zhang Y., Qin C., Development of an inactivated vaccine candidate for SARS-CoV-2. Science 369, 77– 81 (2020). 10.1126/science.abc1932 32376603 PMC7202686 source
  • May combine two claims.

    Premisecitation

    Following natural infection of humans with SARS-CoV, neutralizing antibody and memory B cell responses in some individuals are short lived (~3 years), whereas memory T cells persist for at least 6 years.

    “Following natural infection of humans with the related SARS-CoV, neutralizing antibody and memory B cell responses in some individuals are reported to be short lived (~ 3 years), whereas memory T cells persist for at least 6 years (54–56)”
    Quote in the paperSubstantial claim1 of 3 sources checked
    • cites [54] Tang F., Quan Y., Xin Z.-T., Wrammert J., Ma M.-J., Lv H., Wang T.-B., Yang H., Richardus J. H., Liu W., Cao W.-C., Lack of peripheral memory B cell responses in recovered patients with severe acute respiratory syndrome: A six-year follow-up study. J. Immunol. 186, 7264– 7268 (2011). 10.4049/jimmunol.0903490 21576510 source
    • cites [55] Ng O.-W., Chia A., Tan A. T., Jadi R. S., Leong H. N., Bertoletti A., Tan Y.-J., Memory T cell responses targeting the SARS coronavirus persist up to 11 years post-infection. Vaccine 34, 2008– 2014 (2016). 10.1016/j.vaccine.2016.02.063 26954467 PMC7115611 source

      The Introduction reports that SARS-specific memory T cells persisted for up to six years after recovery, and the Conclusion reports their detection at nine and eleven years. The Introduction also says SARS-specific antibody levels were undetectable at six years, but our copy does not establish that neutralizing antibodies or memory B cells were short-lived at approximately three years. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [56] Chen H., Hou J., Jiang X., Ma S., Meng M., Wang B., Zhang M., Zhang M., Tang X., Zhang F., Wan T., Li N., Yu Y., Hu H., Yang R., He W., Wang X., Cao X., Response of memory CD8+ T cells to severe acute respiratory syndrome (SARS) coronavirus in recovered SARS patients and healthy individuals. J. Immunol. 175, 591– 598 (2005). 10.4049/jimmunol.175.1.591 15972696 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Anti-S T-cell responses to SARS- and MERS-CoVs contribute toward viral clearance in normal as well as aged mice infected with SARS- or MERS-CoV, respectively.

    “anti-S T-cell responses to the related SARS- and MERS-CoVs contribute toward viral clearance in normal as well as aged mice infected with SARS- or MERS-CoV, respectively (43–45).”
    Quote in the paperNot a substantial claim3 of 3 sources checked
    • cites [43] Zhao J., Zhao J., Perlman S., T cell responses are required for protection from clinical disease and for virus clearance in severe acute respiratory syndrome coronavirus-infected mice. J. Virol. 84, 9318– 9325 (2010). 10.1128/JVI.01049-10 20610717 PMC2937604 source

      The Results identify S366 as an epitope of the SARS-CoV spike protein and report that transferring S366-specific CD8 T cells accelerated viral clearance in infected BALB/c mice. This supports the SARS-CoV portion of the claim, but the paper does not establish the claimed effect in aged mice or in MERS-CoV-infected mice. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [44] Channappanavar R., Zhao J., Perlman S., T cell-mediated immune response to respiratory coronaviruses. Immunol. Res. 59, 118– 128 (2014). 10.1007/s12026-014-8534-z 24845462 PMC4125530 source

      The sections on T-cell responses in infected animals and on memory T cells report that spike-specific responses contribute to SARS-CoV clearance in young mice and can improve clearance or protection in older mice. The MERS-CoV passage reports spike-specific CD8 T cells and a role for T cells in clearance in susceptible mice, but does not establish the claimed effect in aged MERS-CoV-infected mice. Page numbers are unavailable in our copy. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [45] Channappanavar R., Fett C., Zhao J., Meyerholz D. K., Perlman S., Virus-specific memory CD8 T cells provide substantial protection from lethal severe acute respiratory syndrome coronavirus infection. J. Virol. 88, 11034– 11044 (2014). 10.1128/JVI.01505-14 25056892 PMC4178831 source

      The Results report that responses to the SARS-CoV spike epitopes S436 and S525 accelerated viral clearance in 8- to 10-month-old mice. The Discussion says virus-specific CD8 T cells are important for MERS-CoV clearance, but does not establish that those cells target spike or that the finding applies to both young and aged MERS-CoV-infected mice. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
  • The quote only partly states this claim.

    Findingnone given

    A prime-only replicating RNA vaccine delivered with lipid inorganic nanoparticles induces neutralizing antibody and T cell responses against SARS-CoV-2 in aged mice and macaques.

    “A prime-only replicating RNA vaccine delivered with lipid inorganic nanoparticles induces neutralizing antibody and T cell responses against SARS-CoV-2 in aged mice and macaques.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Mice receiving a 10 or 1 μg prime/boost exhibited robust splenic T cell responses with mean IFN-γ spots/10^6 cells of 1179, 1328, and 946 in the 10 μg groups and 458, 409, and 1231 in the 1 μg groups for the 17-, 8-, and 2-month old mice, respectively.

    “Mice receiving a 10 or 1 μg prime/boost exhibited robust splenic T cell responses with mean IFN-γ spots/106 cells of 1179, 1328, and 946 in the 10 μg groups and 458, 409, and 1231 in the 1 μg groups for the 17-, 8-, and 2-month old mice, respectively (Fig. 3B).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    LION maintained full integrity of repRNA molecules and complex size at 1, 4 and 7 days after mixing.

    “LION maintained full integrity of the repRNA molecules (Fig. 1H) and complex size (Fig. 1I) at all time points.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Following a boost immunization, 17-month old mice developed significantly higher antibody responses relative to their prime responses, approaching post-boost responses seen in 8- and 2-month old mice; antibody responses in the 17-month old 1 μg dose group were still significantly lower than the 2-month-old counterpart.

    “However, following a boost immunization, the 17-month old mice developed significantly higher antibody responses relative to their prime responses (p=0.001 and p<0.0001, for the 10 and 1 μg doses, respectively), approaching the post-boost responses seen in the 8- and 2-month old mice; antibody responses in the 17-month old 1 μg dose group were still significantly lower than the 2-month-old”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    All three dose groups responded to a boost immunization, reaching anti-S mean IgG concentrations of 1517, 937, and 312 μg/ml for 10, 1, and 0.1 μg, respectively.

    “All three dose groups, 10, 1, and 0.1 μg, responded to a boost immunization, reaching anti-S mean IgG concentrations of 1517, 937, and 312 μg/ml, respectively (Fig. 2A).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    No significant differences were observed between age groups in T cell responses, but more variability was observed in the 17-month old mice relative to the 8- and 2-month old mice.

    “No significant differences were observed between age groups, however, more variability in T cell responses were observed in the 17-month old mice relative to the 8- and 2-month old mice.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Both the 10 and 1 μg prime-only doses induced neutralizing antibodies with mean IC50 of 1:643 and 1:226, respectively, significantly higher than titers induced by the 0.1 μg dose (p=0.03 and p=0.02).

    “Both the 10 and 1 μg prime-only doses induced neutralizing antibodies with mean 50% inhibitory concentrations (IC50) of 1:643 and 1:226, respectively, significantly higher than titers induced by the 0.1 μg dose (p=0.03 and p=0.02, respectively)”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Mixing anionic repRNA with cationic DOTAP on LION promotes immediate complex formation, increasing particle size to an intensity-weighted average diameter of 90 nm.

    “When mixed, electrostatic association between anionic repRNA and cationic DOTAP molecules on the surface of LION promotes immediate complex formation, as confirmed by an increase in particle size to an intensity-weighted average diameter of 90 nm detected by dynamic light scattering (Fig. 1F).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Robust T cell responses were detected in the lung and were similar between groups with mean IFN-γ spots/10^6 cells of 756, 784, and 777.

    “Robust T cell responses were also detected in the lung and were similar between groups with mean IFN-γ spots/106 cells of 756, 784, and 777, respectively (Fig. 2F).”
    Quote in the paperNot a substantial claim
  • May combine two claims. The quote only partly states this claim.

    Findingown data

    The 0.1 μg dose induced partial seroconversion (2 out of 5) at day 14, increasing to 4 out of 5 by day 28.

    “partial seroconversion (2 out of 5) at a 0.1 μg dose, increasing to 4 out of 5 by day 28 (Fig. 2A).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Peptide response specificity showed a biased response toward the S1 domain in the spleen, whereas responses in the lung were more broadly distributed between the S1 and S2 domains.

    “analysis of the specificity of peptide response showed a biased response toward the S1 domain of the S protein in the spleen (Fig. S1A), whereas responses in the lung were more broadly distributed between the S1 and S2 domains of the S protein (Fig. S1B).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    LION/repRNA-CoV2S induced ratios of IgG2a:IgG1 greater than 1 in all age groups of BALB/c mice, indicating a Th1-biased immune response.

    “LION/repRNA-CoV2S induced ratios of IgG2a:IgG1 greater than 1 (Fig. 3C, D) in all age groups of BALB/c mice, indicating a Th1-biased immune response.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    All three macaques immunized with the prime-only 250 μg dose seroconverted as early as day 10, with anti-S IgG concentrations continuing to increase to 48, 51, and 61 μg/ml by day 42, then appearing to plateau through at least day 70.

    “all three macaques immunized with the prime-only 250 μg dose seroconverted as early as day 10, with anti-S IgG concentrations continuing to increase in these 3 animals to 48, 51, and 61 μg/ml by day 42, then appearing to plateau through at least day 70 post vaccination (Fig. 4B).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    LION/repRNA-CoV2S vaccine induced robust neutralization of SARS-CoV-2 in vaccinated mice and pigtail macaques, with a mean PRNT80 titer in all 5 macaques of 1:197.

    “Here, we show that the LION/repRNA-CoV2S vaccine induced robust neutralization of SARS-CoV-2 in vaccinated mice and pigtail macaques, with a mean PRNT80 titer in all 5 macaques of 1:197.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Peak T cell responses varied between days 28-42 and were independent of the vaccine dose.

    “Peak responses varied between days 28-42 and were independent of the vaccine dose.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Findingown data

    None of the pigtail macaques became severely ill or required euthanasia during the study.

    “None of the animals became severely ill during the course of the study and none required euthanasia.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Sera from the three macaques immunized with the prime-only 250 μg dose neutralized pseudovirus with reciprocal IC50 titers of 1:38, 1:20 and 1:47 by day 28, increasing to 1:472, 1:108, and 1:149 by day 42; the 50 μg dose group achieved similar robust IC50 titers only after booster immunization, reaching 1:218 and 1:358 by day 42.

    “sera from the three macaques immunized with the prime-only 250 μg dose neutralized pseudovirus (SARS-CoV-2 Wuhan-Hu-1 pseudotype) transduction of cells in vitro with reciprocal IC50 titers of 1:38, 1:20 and 1:47 by day 28, with IC50 titers increasing to 1:472, 1:108, and 1:149 by day 42; the 50 μg dose group achieved similar robust IC50 titers only after the booster immunization, reaching pseudov”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    By day 42, mean PRNT80 titers significantly increased to 1:176 after a booster immunization in the 50 μg dose group and to 1:211 in the prime-only 250 μg dose group (p=0.012 for both doses).

    “By day 42, mean PRNT80 titers significantly increased to 1:176 after a booster immunization in the 50 μg dose group and to 1:211 in the prime-only 250 μg dose group, (Fig. 4D, p=0.012 for both doses, and Fig. S4).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Frequencies of IFN-γ producing CD4+ or CD8+ T cells showed an increasing trend in some animals by 42 days post vaccination, although changes were not significant.

    “Frequencies of IFN-γ producing CD4+ or CD8+ T cells showed an increasing trend in some animals by 42 days post vaccination, although changes were not significant (Fig. 5C).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    All 5 macaques developed PRNT80 titers within the same range as titers measured in seven convalescent humans (<1:20 to 1:1280, collected 15 to 64 days post onset of symptoms) and there was no significant difference in mean neutralizing titers between all 5 vaccinated macaques (1:197) and convalescent humans (1:518) (P=0.27).

    “all 5 macaques developed PRNT80 titers within the same range as titers measured in the seven convalescent humans (<1:20 to 1:1280, collected 15 to 64 days post onset of symptoms) and there was no significant difference in mean neutralizing titers between all 5 vaccinated macaques (1:197) and convalescent humans (1:518) (P=0.27, Fig. 4D, Fig. S4, and Table S1).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Both macaques receiving 50 μg repRNA-CoV2S seroconverted after a single dose but developed lower antibody responses with anti-S IgG concentrations of 1 and 0.5 μg/ml by day 28, compared to 7, 20, and 45 μg/ml in the 250 μg dose group at this same time point.

    “Both macaques receiving 50 μg repRNA-CoV2S seroconverted after a single dose but developed lower antibody responses with anti-S IgG concentrations of 1 and 0.5 μg/ml by day 28, compared to 7, 20, and 45 μg/ml in the 250 μg dose group at this same time point (Fig. 4B).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    repRNA vaccines mimic an alphavirus infection by triggering viral-sensing stress factors and activating innate pathways through Toll-like receptors and RIG-I to produce interferons, pro-inflammatory factors and chemotaxis of antigen-presenting cells, as well as promoting antigen cross-priming.

    “repRNA vaccines mimic an alphavirus infection in that viral-sensing stress factors are triggered and innate pathways are activated through Toll-like receptors and retinoic acid inducible gene (RIG)-I to produce interferons, pro-inflammatory factors and chemotaxis of antigen-presenting cells, as well as promoting antigen cross-priming (28).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [28] Jensen S., Thomsen A. R., Sensing of RNA viruses: A review of innate immune receptors involved in recognizing RNA virus invasion. J. Virol. 86, 2900– 2910 (2012). 10.1128/JVI.05738-11 22258243 PMC3302314 source
  • May combine two claims.

    Premisecitation

    Introduction of repRNA into cells initiates ongoing biosynthesis of antigen-encoding RNA that results in dramatically increased expression and duration that enhances humoral and cellular immune responses.

    “introduction of repRNA into cells initiates ongoing biosynthesis of antigen-encoding RNA that results in dramatically increased expression and duration that enhances humoral and cellular immune responses (27).”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [27] Berglund P., Smerdou C., Fleeton M. N., Tubulekas I., Liljeström P., Enhancing immune responses using suicidal DNA vaccines. Nat. Biotechnol. 16, 562– 565 (1998). 10.1038/nbt0698-562 9624688 source
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Study design and conductnone given

    Endpoints were selected prior to the start of each study and were selected based on the primary objective of characterizing the safety and immune responses to vaccination with a LION/repRNA-CoV2S vaccine.

    “Endpoints were selected prior to the start of each study and were selected based on the primary objective of characterizing the safety and immune responses to vaccination with a LION/repRNA-CoV2S vaccine.”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim.

    Premisecitation

    C57BL/6 mice lack the IgG2a isotype.

    “IgG2c isotype was selected for C57BL/6 sera due to their lack of IgG2a isotype (64)”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [64] Martin R. M., Brady J. L., Lew A. M., The need for IgG2c specific antiserum when isotyping antibodies from C57BL/6 and NOD mice. J. Immunol. Methods 212, 187– 192 (1998). 10.1016/S0022-1759(98)00015-5 9672206 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Group sizes in the macaque study were limited by availability of animals.

    “Group sizes in the macaque study were limited by availability of animals.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    BALB/C mice utilize the IgG2a isotype.

    “while IgG2a is utilized for BALB/C sera (65).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [65] Aberle J. H., Aberle S. W., Kofler R. M., Mandl C. W., Humoral and cellular immune response to RNA immunization with flavivirus replicons derived from tick-borne encephalitis virus. J. Virol. 79, 15107– 15113 (2005). 10.1128/JVI.79.24.15107-15113.2005 16306582 PMC1316042 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    No blinding was used throughout all studies.

    “No blinding was used throughout all studies.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationreasoning

    The prolonged increase in serum antibody titers through day 42 and plateauing through at least day 70 in pigtail macaques is most likely due to sustained antigen expression mediated by repRNA, which may result in plasma cell activation akin to traditional vaccine booster immunizations.

    “This is most likely due to the sustained antigen expression mediated by repRNA, which may result in plasma cell activation akin to what happens following traditional vaccine booster immunizations.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductown data

    Because the 250 μg dose was administered concurrently to five injection sites in pigtail macaques, it cannot be ruled out that immunogenicity and safety measures would be different following administration of this dose via a single bolus injection.

    “However, because the 250 μg dose was administered concurrently to five injection sites in the pigtail macaques, it cannot be ruled out that immunogenicity and safety measures would be different to those following administration of this dose via a single bolus injection.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Study design and conductreasoning

    These conclusions are drawn in the absence of challenge data and from a limited number of animals and at time points after vaccination where observed responses, especially T-cell responses, exhibited great variability.

    “However, these conclusions are drawn in the absence of challenge data and from a limited number of animals and at time points after vaccination where observed responses, especially T-cell responses, exhibited great variability.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Study design and conductnone given

    Mouse group sizes were based on power analyses using data from previous experiments using a similar repRNA platform and mice were randomly distributed between groups.

    “Mouse group sizes were based on power analyses using data from previous experiments using a similar repRNA platform and mice were randomly distributed between groups.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Five pigtail macaques were stratified based on age and weight.

    “Five pigtail macaques were stratified based on age and weight.”
    Quote in the paperNot a substantial claim
40 of 40
  • The paper relies on this without support.

    Pigtail macaques more closely resemble humans in the immune response to vaccination than mice do.

    “nonhuman primate model that more closely resembles humans in the immune response to vaccination”
  • The paper relies on this without support.

    Immune responses and protection observed in mice and pigtail macaques are predictive of protective immunity in humans.

    “Together, our results support further development of LION/repRNA-CoV2S as a vaccine candidate for protection against COVID-19.”
2 of 2

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Authors
Erasmus, J. H., Khandhar, A. P., O’Connor, M. A., Walls, A. C., Hemann, E. A., Murapa, P., Archer, J., Leventhal, S., Fuller, J. T., Lewis, T. B., Draves, K. E., Randall, S., Guerriero, K. A., Duthie, M. S., Carter, D., Reed, S. G., Hawman, D. W., Feldmann, H., Gale, M., Veesler, D., Berglund, P., & Fuller, D. H.
Affiliations
  • University of Washington (US)
  • PAI Life Sciences (United States) (US)
  • National Institute of Allergy and Infectious Diseases (US)
  • HDT Bio, Seattle, WA 98102, USA.
Corresponding author
Fuller, Deborah Heydenburg
Venue
Science Translational Medicine
Published
2020-08-05
Volume
12
Issue
555
ISSN
  • 1946-6234 (ISSN-L)
  • 1946-6242
OpenAlex
W3043351106
Cited by
241
References
69
Citations by year
2026: 11 · 2025: 33 · 2024: 35 · 2023: 33 · 2022: 53 · 2021: 57 · 2020: 19
FWCI
4.96
Type
journal article
Language
en
Open access
Locations
  • Science Translational Medicine (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • PubMed Central (submittedVersion, cc-by)
Funders
  • National Institute of General Medical Sciences (R01GM120553)
  • National Institute of Allergy and Infectious Diseases (P51OD010425, 27220140006C, 75N93019C00037, HHSN272201700059C, 1F32AI136371)
  • Burroughs Wellcome Fund (Investigators in the pathogenesis of infectious disease award)
  • Pew Charitable Trusts (Pew Biomedical Scholars Award)
  • Division of Intramural Research, National Institute of Allergy and Infectious Diseases
  • University of Washington Center for Innate Immunity and Immune Disease
  • Washington Research Foundation (WRF Postdoctoral Fellowship)
Topics
  • Health Sciences › Medicine › Infectious Diseases › SARS-CoV-2 and COVID-19 Research
  • Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Virus Infections Studies
  • Health Sciences › Medicine › Infectious Diseases › SARS-CoV-2 detection and testing
Keywords
SARS-CoV-2, COVID-19 vaccines, spike protein, neutralizing antibodies, T cell response, prime-boost vaccination, aged mice, non-human primates, intramuscular injection
MeSH terms
Betacoronavirus, COVID-19, SARS-CoV-2, COVID-19 Vaccines, Alphavirus, Animals, Antibody Formation, Inorganic Chemicals, Lipids, Mice, Inbred BALB C, Mice, Inbred C57BL, Pneumonia, Viral, Primates, Replicon, RNA, Viral, T-Lymphocytes, Viral Vaccines, Coronavirus Infections, Mice, Nanoparticles, Antibodies, Neutralizing, Pandemics

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-11.

Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-11.

Cited sources are checked by gpt-6-sol.

Statistics and arithmetic are recomputed, not judged.

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