Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

Lozupone, C., & Knight, R. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.12.8228-8235.2005 · Cited by 8,227

Analyses of the Stability and Core Taxonomic Memberships of the Human Microbiome

Li, K., Bihan, M., & Methé, B. A. (2013) · PLoS ONE · doi:10.1371/journal.pone.0063139 · Cited by 235

Interaction Between Atypical Antipsychotics and the Gut Microbiome in a Bipolar Disease Cohort

Flowers, S. A., Evans, S. J., Ward, K. M., McInnis, M. G., & Ellingrod, V. L. (2017) · Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy · doi:10.1002/phar.1890 · Cited by 235

Synbiotics Alter Fecal Microbiomes, But Not Liver Fat or Fibrosis, in a Randomized Trial of Patients With Nonalcoholic Fatty Liver Disease

Scorletti, E., Afolabi, P. R., Miles, E. A., Smith, D. E., Almehmadi, A., Alshathry, A., Childs, C. E., Del Fabbro, S., Bilson, J., Moyses, H. E., et al. (2020) · Gastroenterology · doi:10.1053/j.gastro.2020.01.031 · Cited by 237

Effects of agricultural intensification on soil biodiversity and implications for ecosystem functioning: A meta-analysis

de Graaff, M.-A., Hornslein, N., Throop, H. L., Kardol, P., & van Diepen, L. T. A. (2019) · Advances in Agronomy · doi:10.1016/bs.agron.2019.01.001 · Cited by 234

APOE genotype influences the gut microbiome structure and function in humans and mice: relevance for Alzheimer's disease pathophysiology

Tran, T. T. T., Corsini, S., Kellingray, L., Hegarty, C., Le Gall, G., Narbad, A., Müller, M., Tejera, N., O'Toole, P. W., Minihane, A.-M., et al. (2019) · The FASEB Journal · doi:10.1096/fj.201900071r · Cited by 233

The Artificial Sweetener Splenda Promotes Gut Proteobacteria, Dysbiosis, and Myeloperoxidase Reactivity in Crohn’s Disease–Like Ileitis

Rodriguez-Palacios, A., Harding, A., Menghini, P., Himmelman, C., Retuerto, M., Nickerson, K. P., Lam, M., Croniger, C. M., McLean, M. H., Durum, S. K., et al. (2018) · Inflammatory Bowel Diseases · doi:10.1093/ibd/izy060 · Cited by 225

Impact of Pelvic Radiotherapy on Gut Microbiota of Gynecological Cancer Patients Revealed by Massive Pyrosequencing

Nam, Y.-D., Kim, H. J., Seo, J.-G., Kang, S. W., & Bae, J.-W. (2013) · PLoS ONE · doi:10.1371/journal.pone.0082659 · Cited by 230

The combination of sport and sport-specific diet is associated with characteristics of gut microbiota: an observational study

Jang, L.-G., Choi, G., Kim, S.-W., Kim, B.-Y., Lee, S., & Park, H. (2019) · Journal of the International Society of Sports Nutrition · doi:10.1186/s12970-019-0290-y · Cited by 224

Altered microbiome composition in individuals with fibromyalgia

Minerbi, A., Gonzalez, E., Brereton, N. J. B., Anjarkouchian, A., Dewar, K., Fitzcharles, M.-A., Chevalier, S., & Shir, Y. (2019) · Pain · doi:10.1097/j.pain.0000000000001640 · Cited by 220

Next-Generation Sequencing for Infectious Disease Diagnosis and Management

Lefterova, M. I., Suarez, C. J., Banaei, N., & Pinsky, B. A. (2015) · The Journal of Molecular Diagnostics · doi:10.1016/j.jmoldx.2015.07.004 · Cited by 207

Metabolic, Epigenetic, and Transgenerational Effects of Gut Bacterial Choline Consumption

Romano, K. A., Martinez-del Campo, A., Kasahara, K., Chittim, C. L., Vivas, E. I., Amador-Noguez, D., Balskus, E. P., & Rey, F. E. (2017) · Cell Host & Microbe · doi:10.1016/j.chom.2017.07.021 · Cited by 224

Bacterial dynamics in intestines of the black tiger shrimp and the Pacific white shrimp during Vibrio harveyi exposure

Rungrassamee, W., Klanchui, A., Maibunkaew, S., & Karoonuthaisiri, N. (2016) · Journal of Invertebrate Pathology · doi:10.1016/j.jip.2015.11.004 · Cited by 222

Gut Microbiota and Tacrolimus Dosing in Kidney Transplantation

Lee, J. R., Muthukumar, T., Dadhania, D., Taur, Y., Jenq, R. R., Toussaint, N. C., Ling, L., Pamer, E., & Suthanthiran, M. (2015) · PLOS ONE · doi:10.1371/journal.pone.0122399 · Cited by 211

Effectiveness of ecological rescue for altered soil microbial communities and functions

Calderón, K., Spor, A., Breuil, M.-C., Bru, D., Bizouard, F., Violle, C., Barnard, R. L., & Philippot, L. (2017) · The ISME Journal · doi:10.1038/ismej.2016.86 · Cited by 205

Bifidobacterium pseudocatenulatum CECT 7765 Reduces Obesity-Associated Inflammation by Restoring the Lymphocyte-Macrophage Balance and Gut Microbiota Structure in High-Fat Diet-Fed Mice

Moya-Pérez, A., Neef, A., & Sanz, Y. (2015) · PLOS ONE · doi:10.1371/journal.pone.0126976 · Cited by 211

Microbiome dynamics during ensiling of corn with and without Lactobacillus plantarum inoculant

Keshri, J., Chen, Y., Pinto, R., Kroupitski, Y., Weinberg, Z. G., & Sela, S. (2018) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-018-8903-y · Cited by 210

Synbiotic approach restores intestinal homeostasis and prolongs survival in leukaemic mice with cachexia

Bindels, L. B., Neyrinck, A. M., Claus, S. P., Le Roy, C. I., Grangette, C., Pot, B., Martinez, I., Walter, J., Cani, P. D., & Delzenne, N. M. (2016) · The ISME Journal · doi:10.1038/ismej.2015.209 · Cited by 209

The nasal cavity microbiota of healthy adults

Bassis, C. M., Tang, A. L., Young, V. B., & Pynnonen, M. A. (2014) · Microbiome · doi:10.1186/2049-2618-2-27 · Cited by 209

Gut bacterial translocation is associated with microinflammation in end‐stage renal disease patients

WANG, F., JIANG, H., SHI, K., REN, Y., ZHANG, P., & CHENG, S. (2012) · Nephrology · doi:10.1111/j.1440-1797.2012.01647.x · Cited by 209

Analysis of the Intestinal Lumen Microbiota in an Animal Model of Colorectal Cancer

Zhu, Q., Jin, Z., Wu, W., Gao, R., Guo, B., Gao, Z., Yang, Y., & Qin, H. (2014) · PLoS ONE · doi:10.1371/journal.pone.0090849 · Cited by 206

Changes in the intestinal bacterial community during the growth of white shrimp, Litopenaeus vannamei

Huang, Z., Li, X., Wang, L., & Shao, Z. (2016) · Aquaculture Research · doi:10.1111/are.12628 · Cited by 205

Loss of Microbiota-Mediated Colonization Resistance to Clostridium difficile Infection With Oral Vancomycin Compared With Metronidazole

Lewis, B. B., Buffie, C. G., Carter, R. A., Leiner, I., Toussaint, N. C., Miller, L. C., Gobourne, A., Ling, L., & Pamer, E. G. (2015) · Journal of Infectious Diseases · doi:10.1093/infdis/jiv256 · Cited by 197

Variable selection for sparse Dirichlet-multinomial regression with an application to microbiome data analysis

Chen, J., & Li, H. (2013) · The Annals of Applied Statistics · doi:10.1214/12-aoas592 · Cited by 191

Effects of a diet based on inulin-rich vegetables on gut health and nutritional behavior in healthy humans

Hiel, S., Bindels, L. B., Pachikian, B. D., Kalala, G., Broers, V., Zamariola, G., Chang, B. P. I., Kambashi, B., Rodriguez, J., Cani, P. D., et al. (2019) · The American Journal of Clinical Nutrition · doi:10.1093/ajcn/nqz001 · Cited by 197

Diet-derived short chain fatty acids stimulate intestinal epithelial cells to induce mucosal tolerogenic dendritic cells

Goverse, G., Molenaar, R., Macia, L., Tan, J., Erkelens, M. N., Konijn, T., Knippenberg, M., Cook, E. C. L., Hanekamp, D., Veldhoen, M., et al. (2017) · The Journal of Immunology · doi:10.4049/jimmunol.1600165 · Cited by 200

A specific gene-microbe interaction drives the development of Crohn’s disease–like colitis in mice

Caruso, R., Mathes, T., Martens, E. C., Kamada, N., Nusrat, A., Inohara, N., & Núñez, G. (2019) · Science Immunology · doi:10.1126/sciimmunol.aaw4341 · Cited by 185

Deep Sequencing Analyses of Low Density Microbial Communities: Working at the Boundary of Accurate Microbiota Detection

Biesbroek, G., Sanders, E. A. M., Roeselers, G., Wang, X., Caspers, M. P. M., Trzciński, K., Bogaert, D., & Keijser, B. J. F. (2012) · PLoS ONE · doi:10.1371/journal.pone.0032942 · Cited by 196

Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data

Jervis-Bardy, J., Leong, L. E. X., Marri, S., Smith, R. J., Choo, J. M., Smith-Vaughan, H. C., Nosworthy, E., Morris, P. S., O’Leary, S., Rogers, G. B., et al. (2015) · Microbiome · doi:10.1186/s40168-015-0083-8 · Cited by 192

Toward an understanding of changes in diversity associated with fecal microbiome transplantation based on 16S rRNA gene deep sequencing

Shahinas, D., Silverman, M., Sittler, T., Chiu, C., Kim, P., Allen-Vercoe, E., Weese, S., Wong, A., Low, D. E., & Pillai, D. R. (2012) · mBio · doi:10.1128/mbio.00338-12 · Cited by 191

The taxonomic composition of the donor intestinal microbiota is a major factor influencing the efficacy of faecal microbiota transplantation in therapy refractory ulcerative colitis

Kump, P., Wurm, P., Gröchenig, H. P., Wenzl, H., Petritsch, W., Halwachs, B., Wagner, M., Stadlbauer, V., Eherer, A., Hoffmann, K. M., et al. (2018) · Alimentary Pharmacology & Therapeutics · doi:10.1111/apt.14387 · Cited by 196

The Mouse Gastrointestinal Bacteria Catalogue enables translation between the mouse and human gut microbiotas via functional mapping

Beresford-Jones, B. S., Forster, S. C., Stares, M. D., Notley, G., Viciani, E., Browne, H. P., Boehmler, D. J., Soderholm, A. T., Kumar, N., Vervier, K., et al. (2022) · Cell Host & Microbe · doi:10.1016/j.chom.2021.12.003 · Cited by 194

Targeting the gut microbiota with inulin-type fructans: preclinical demonstration of a novel approach in the management of endothelial dysfunction

Catry, E., Bindels, L. B., Tailleux, A., Lestavel, S., Neyrinck, A. M., Goossens, J.-F., Lobysheva, I., Plovier, H., Essaghir, A., Demoulin, J.-B., et al. (2018) · Gut · doi:10.1136/gutjnl-2016-313316 · Cited by 194

Impact of next generation sequencing techniques in food microbiology.

Mayo, B., Rachid, C., Alegria, A., Leite, A., Peixoto, R., & Delgado, S. (2014) · Current Genomics · doi:10.2174/1389202915666140616233211 · Cited by 188

Differences of small intestinal bacteria populations in adults and children with/without celiac disease: Effect of age, gluten diet, and disease

Nistal, E., Caminero, A., Herrán, A. R., Arias, L., Vivas, S., de Morales, J. M. R., Calleja, S., de Miera, L. E. S., Arroyo, P., & Casqueiro, J. (2012) · Inflammatory Bowel Diseases · doi:10.1002/ibd.21830 · Cited by 187

The maternal vaginal microbiome partially mediates the effects of prenatal stress on offspring gut and hypothalamus

Jašarević, E., Howard, C. D., Morrison, K., Misic, A., Weinkopff, T., Scott, P., Hunter, C., Beiting, D., & Bale, T. L. (2018) · Nature Neuroscience · doi:10.1038/s41593-018-0182-5 · Cited by 189

The eukaryotic life on microplastics in Brackish ecosystems

Kettner, M. T., Oberbeckmann, S., Labrenz, M., & Grossart, H.-P. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.00538 · Cited by 185

Gut microbiota alterations associated with reduced bone mineral density in older adults

Das, M., Cronin, O., Keohane, D. M., Cormac, E. M., Nugent, H., Nugent, M., Molloy, C., O’Toole, P. W., Shanahan, F., Molloy, M. G., et al. (2019) · Rheumatology · doi:10.1093/rheumatology/kez302 · Cited by 185

Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer

de Oliveira, M. N. V., Jewell, K. A., Freitas, F. S., Benjamin, L. A., Tótola, M. R., Borges, A. C., Moraes, C. A., & Suen, G. (2013) · Veterinary Microbiology · doi:10.1016/j.vetmic.2013.02.013 · Cited by 184

Gut Dysbiosis and Muscle Aging: Searching for Novel Targets against Sarcopenia

Picca, A., Fanelli, F., Calvani, R., Mulè, G., Pesce, V., Sisto, A., Pantanelli, C., Bernabei, R., Landi, F., & Marzetti, E. (2018) · Mediators of Inflammation · doi:10.1155/2018/7026198 · Cited by 181

Blockade of interleukin-6 receptor in the periphery promotes rapid and sustained antidepressant actions: a possible role of gut–microbiota–brain axis

Zhang, J.-C., Yao, W., Dong, C., Yang, C., Ren, Q., Ma, M., & Hashimoto, K. (2017) · Translational Psychiatry · doi:10.1038/tp.2017.112 · Cited by 182

Diet-Microbiome Interactions in Health Are Controlled by Intestinal Nitrogen Source Constraints

Holmes, A. J., Chew, Y. V., Colakoglu, F., Cliff, J. B., Klaassens, E., Read, M. N., Solon-Biet, S. M., McMahon, A. C., Cogger, V. C., Ruohonen, K., et al. (2017) · Cell Metabolism · doi:10.1016/j.cmet.2016.10.021 · Cited by 183

A comprehensive analysis of breast cancer microbiota and host gene expression

Thompson, K. J., Ingle, J. N., Tang, X., Chia, N., Jeraldo, P. R., Walther-Antonio, M. R., Kandimalla, K. K., Johnson, S., Yao, J. Z., Harrington, S. C., et al. (2017) · PLOS ONE · doi:10.1371/journal.pone.0188873 · Cited by 183

Bacterial population in intestines of the Black Tiger Shrimp (Penaeus monodon) under different growth stages

Rungrassamee, W., Klanchui, A., Chaiyapechara, S., Maibunkaew, S., Tangphatsornruang, S., Jiravanichpaisal, P., & Karoonuthaisiri, N. (2013) · PLoS ONE · doi:10.1371/journal.pone.0060802 · Cited by 179

Long-term temporal analysis of the human fecal microbiota revealed a stable core of dominant bacterial species

Martínez, I., Muller, C. E., & Walter, J. (2013) · PLoS ONE · doi:10.1371/journal.pone.0069621 · Cited by 181

Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents.

Meier, D. V., Pjevac, P., Bach, W., Hourdez, S., Girguis, P. R., Vidoudez, C., Amann, R., & Meyerdierks, A. (2017) · The ISME Journal · doi:10.1038/ismej.2017.37 · Cited by 177

Gut microbiota-induced changes in β-hydroxybutyrate metabolism are linked to altered sociability and depression in alcohol use disorder

Leclercq, S., Le Roy, T., Furgiuele, S., Coste, V., Bindels, L. B., Leyrolle, Q., Neyrinck, A. M., Quoilin, C., Amadieu, C., Petit, G., et al. (2020) · Cell Reports · doi:10.1016/j.celrep.2020.108238 · Cited by 178

“Remake” by high-throughput sequencing of the microbiota involved in the production of water buffalo mozzarella cheese

Ercolini, D., De Filippis, F., La Storia, A., & Iacono, M. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.02218-12 · Cited by 175

Gastro-Intestinal and Oral Microbiome Signatures Associated with Healthy Aging

Singh, H., Torralba, M. G., Moncera, K. J., DiLello, L., Petrini, J., Nelson, K. E., & Pieper, R. (2019) · GeroScience · doi:10.1007/s11357-019-00098-8 · Cited by 158

Analysis of culture-dependent versus culture-independent techniques for identification of bacteria in clinically obtained bronchoalveolar lavage fluid

Dickson, R. P., Erb-Downward, J. R., Prescott, H. C., Martinez, F. J., Curtis, J. L., Lama, V. N., & Huffnagle, G. B. (2014) · Journal of Clinical Microbiology · doi:10.1128/jcm.01028-14 · Cited by 176

A comparison of the gut microbiome between long‐term users and non‐users of proton pump inhibitors

Clooney, A. G., Bernstein, C. N., Leslie, W. D., Vagianos, K., Sargent, M., Laserna‐Mendieta, E. J., Claesson, M. J., & Targownik, L. E. (2016) · Alimentary Pharmacology & Therapeutics · doi:10.1111/apt.13568 · Cited by 166

Effect of the Macroalgae Asparagopsis Taxiformis on Methane Production and Rumen Microbiome Assemblage

Roque, B. M., Brooke, C. G., Ladau, J., Polley, T., Marsh, L. J., Najafi, N., Pandey, P., Singh, L., Kinley, R., Salwen, J. K., et al. (2019) · Animal Microbiome · doi:10.1186/s42523-019-0004-4 · Cited by 166

The microbiota in bronchoalveolar lavage from young children with chronic lung disease includes taxa present in both the oropharynx and nasopharynx

Marsh, R. L., Kaestli, M., Chang, A. B., Binks, M. J., Pope, C. E., Hoffman, L. R., & Smith-Vaughan, H. C. (2016) · Microbiome · doi:10.1186/s40168-016-0182-1 · Cited by 171

Mucosal-associated invariant T cells promote inflammation and intestinal dysbiosis leading to metabolic dysfunction during obesity

Toubal, A., Kiaf, B., Beaudoin, L., Cagninacci, L., Rhimi, M., Fruchet, B., da Silva, J., Corbett, A. J., Simoni, Y., Lantz, O., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-17307-0 · Cited by 165

Gut microbiota profiles in critically ill patients, potential biomarkers and risk variables for sepsis

Agudelo-Ochoa, G. M., Valdés-Duque, B. E., Giraldo-Giraldo, N. A., Jaillier-Ramírez, A. M., Giraldo-Villa, A., Acevedo-Castaño, I., Yepes-Molina, M. A., Barbosa-Barbosa, J., & Benítez-Paéz, A. (2020) · Gut Microbes · doi:10.1080/19490976.2019.1707610 · Cited by 166

Association between gut microbiota and bone health: Potential mechanisms and prospective

Chen, Y.-C., Greenbaum, J., Shen, H., & Deng, H.-W. (2017) · The Journal of Clinical Endocrinology & Metabolism · doi:10.1210/jc.2017-00513 · Cited by 165

Biogeographical differences in the influence of maternal microbial sources on the early successional development of the bovine neonatal gastrointestinal tract

Yeoman, C. J., Ishaq, S. L., Bichi, E., Olivo, S. K., Lowe, J., & Aldridge, B. M. (2018) · Scientific Reports · doi:10.1038/s41598-018-21440-8 · Cited by 168

Prolonged use of a proton pump inhibitor reduces microbial diversity: implications for Clostridium difficile susceptibility

Seto, C. T., Jeraldo, P., Orenstein, R., Chia, N., & DiBaise, J. K. (2014) · Microbiome · doi:10.1186/2049-2618-2-42 · Cited by 163

Structural modulation of the gut microbiota and the relationship with body weight: compared evaluation of liraglutide and saxagliptin treatment

Wang, L., Li, P., Tang, Z., Yan, X., & Feng, B. (2016) · Scientific Reports · doi:10.1038/srep33251 · Cited by 165

Bacterial community associated with healthy and diseased pacific white shrimp (Litopenaeus vannamei) larvae and rearing water across different growth stages

Zheng, Y., Yu, M., Liu, J., Qiao, Y., Wang, L., Li, Z., Zhang, X.-H., & Yu, M. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01362 · Cited by 165

Characterisation of the faecal bacterial community in adult and elderly horses fed a high fibre, high oil or high starch diet using 454 pyrosequencing.

Dougal, K., de la Fuente, G., Harris, P. A., Girdwood, S. E., Pinloche, E., Geor, R. J., Nielsen, B. D., Schott, H. C., Elzinga, S., & Newbold, C. J. (2014) · PLoS ONE · doi:10.1371/journal.pone.0087424 · Cited by 165

Comparative microbiome analysis of a Fusarium wilt suppressive soil and a Fusarium wilt conducive soil from the Châteaurenard region

Siegel-Hertz, K., Edel-Hermann, V., Chapelle, E., Terrat, S., Raaijmakers, J. M., & Steinberg, C. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00568 · Cited by 164

Microbiome alteration via fecal microbiota transplantation is effective for refractory immune checkpoint inhibitor–induced colitis

Halsey, T. M., Thomas, A. S., Hayase, T., Ma, W., Abu-Sbeih, H., Sun, B., Parra, E. R., Jiang, Z.-D., DuPont, H. L., Sanchez, C., et al. (2023) · Science Translational Medicine · doi:10.1126/scitranslmed.abq4006 · Cited by 161

CowPI: a rumen microbiome focussed version of the PICRUSt functional inference software

Wilkinson, T. J., Huws, S. A., Edwards, J. E., Kingston-Smith, A. H., Siu-Ting, K., Hughes, M., Rubino, F., Friedersdorff, M., & Creevey, C. J. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01095 · Cited by 160

A clinician's guide to microbiome analysis

Claesson, M. J., Clooney, A. G., & O'Toole, P. W. (2017) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2017.97 · Cited by 153

Citizen science charts two major “stomatotypes” in the oral microbiome of adolescents and reveals links with habits and drinking water composition

Willis, J. R., González-Torres, P., Pittis, A. A., Bejarano, L. A., Cozzuto, L., Andreu-Somavilla, N., Alloza-Trabado, M., Valentín, A., Ksiezopolska, E., Company, C., et al. (2018) · Microbiome · doi:10.1186/s40168-018-0592-3 · Cited by 158

Intratumor microbiome features reveal antitumor potentials of intrahepatic cholangiocarcinoma

Chai, X., Wang, J., Li, H., Gao, C., Li, S., Wei, C., Huang, J., Tian, Y., Yuan, J., Lu, J., et al. (2023) · Gut Microbes · doi:10.1080/19490976.2022.2156255 · Cited by 152

Sebum and Hydration Levels in Specific Regions of Human Face Significantly Predict the Nature and Diversity of Facial Skin Microbiome

Mukherjee, S., Mitra, R., Maitra, A., Gupta, S., Kumaran, S., Chakrabortty, A., & Majumder, P. P. (2016) · Scientific Reports · doi:10.1038/srep36062 · Cited by 153

Effects of the Dietary Protein and Carbohydrate Ratio on Gut Microbiomes in Dogs of Different Body Conditions

Li, Q., Lauber, C. L., Czarnecki-Maulden, G., Pan, Y., & Hannah, S. S. (2017) · mBio · doi:10.1128/mbio.01703-16 · Cited by 148

Biodiversity in Oscypek, a traditional Polish cheese, determined by culture-dependent and-independent approaches

Alegría, Á., Szczesny, P., Mayo, B., Bardowski, J., & Kowalczyk, M. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.06081-11 · Cited by 152

Increased gut permeability in cancer cachexia: mechanisms and clinical relevance

Bindels, L. B., Neyrinck, A. M., Loumaye, A., Catry, E., Walgrave, H., Cherbuy, C., Leclercq, S., Van Hul, M., Plovier, H., Pachikian, B., et al. (2018) · Oncotarget · doi:10.18632/oncotarget.24804 · Cited by 147

Multicenter comparison of lung and oral microbiomes of HIV-infected and HIV-uninfected individuals.

Beck, J. M., Schloss, P. D., Venkataraman, A., Twigg, H., Jablonski, K. A., Bushman, F. D., Campbell, T. B., Charlson, E. S., Collman, R. G., Crothers, K., et al. (2015) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201501-0128oc · Cited by 150

Dynamics of microbial community during ensiling direct-cut alfalfa with and without LAB inoculant and sugar

Zheng, M. L., Niu, D. Z., Jiang, D., Zuo, S. S., & Xu, C. C. (2017) · Journal of Applied Microbiology · doi:10.1111/jam.13456 · Cited by 147

Modulation of post-antibiotic bacterial community reassembly and host response by Candida albicans

Erb Downward, J. R., Falkowski, N. R., Mason, K. L., Muraglia, R., & Huffnagle, G. B. (2013) · Scientific Reports · doi:10.1038/srep02191 · Cited by 136

Deep amplicon sequencing as a powerful new tool to screen for sequence polymorphisms associated with anthelmintic resistance in parasitic nematode populations

Avramenko, R. W., Redman, E. M., Melville, L., Bartley, Y., Wit, J., Queiroz, C., Bartley, D. J., & Gilleard, J. S. (2019) · International Journal for Parasitology · doi:10.1016/j.ijpara.2018.10.005 · Cited by 123

The best practice for microbiome analysis using R

Wen, T., Niu, G., Chen, T., Shen, Q., Yuan, J., & Liu, Y.-X. (2023) · Protein & Cell · doi:10.1093/procel/pwad024 · Cited by 139

Bronchial microbiome of severe COPD patients colonised by Pseudomonas aeruginosa

Millares, L., Ferrari, R., Gallego, M., Garcia-Nuñez, M., Pérez-Brocal, V., Espasa, M., Pomares, X., Monton, C., Moya, A., & Monsó, E. (2014) · European Journal of Clinical Microbiology & Infectious Diseases · doi:10.1007/s10096-013-2044-0 · Cited by 136

The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation

Carmody, L. A., Zhao, J., Kalikin, L. M., LeBar, W., Simon, R. H., Venkataraman, A., Schmidt, T. M., Abdo, Z., Schloss, P. D., & LiPuma, J. J. (2015) · Microbiome · doi:10.1186/s40168-015-0074-9 · Cited by 135

PCR and omics based techniques to study the diversity, ecology and biology of anaerobic fungi: insights, challenges and opportunities

Edwards, J. E., Forster, R. J., Callaghan, T. M., Dollhofer, V., Dagar, S. S., Cheng, Y., Chang, J., Kittelmann, S., Fliegerova, K., Puniya, A. K., et al. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01657 · Cited by 130

Aging and sarcopenia associate with specific interactions between gut microbes, serum biomarkers and host physiology in rats

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