A custom microarray platform for analysis of microRNA gene expression

Untitled work

Bartel (2004) · doi:10.1016/s0092-8674(04)00045-5 · Cited by 34,714

The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans

Reinhart, B. J., Slack, F. J., Basson, M., Pasquinelli, A. E., Bettinger, J. C., Rougvie, A. E., Horvitz, H. R., & Ruvkun, G. (2000) · Nature · doi:10.1038/35002607 · Cited by 4,981

Identification of Novel Genes Coding for Small Expressed RNAs

Lagos-Quintana, M., Rauhut, R., Lendeckel, W., & Tuschl, T. (2001) · Science · doi:10.1126/science.1064921 · Cited by 4,956

MicroRNAs Modulate Hematopoietic Lineage Differentiation

Chen, C.-Z., Li, L., Lodish, H. F., & Bartel, D. P. (2004) · Science · doi:10.1126/science.1091903 · Cited by 3,257

The microRNA Registry

Griffiths-Jones, S. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh023 · Cited by 2,220

Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs

Meister, G., Landthaler, M., Patkaniowska, A., Dorsett, Y., Teng, G., & Tuschl, T. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.07.007 · Cited by 2,052

Microarray data normalization and transformation

Quackenbush, J. (2002) · Nature Genetics · doi:10.1038/ng1032 · Cited by 1,975

MicroRNA-Directed Cleavage of HOXB8 mRNA

Yekta, S., Shih, I.-H., & Bartel, D. P. (2004) · Science · doi:10.1126/science.1097434 · Cited by 1,702

Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation

Sempere, L. F., Freemantle, S., Pitha-Rowe, I., Moss, E., Dmitrovsky, E., & Ambros, V. (2004) · Genome Biology · doi:10.1186/gb-2004-5-3-r13 · Cited by 1,578

siRNAs can function as miRNAs

Doench, J. G., Petersen, C. P., & Sharp, P. A. (2003) · Genes & Development · doi:10.1101/gad.1064703 · Cited by 1,260

Oncomirs—MicroRNAs with a role in cancer

Esquela-Kerscher, A., & Slack, F. J. (2006) · Nature Reviews Cancer · doi:10.1038/nrc1840 · Cited by 5,884

MicroRNA Gene Expression Deregulation in Human Breast Cancer

Iorio, M. V., Ferracin, M., Liu, C.-G., Veronese, A., Spizzo, R., Sabbioni, S., Magri, E., Pedriali, M., Fabbri, M., Campiglio, M., et al. (2005) · Cancer Research · doi:10.1158/0008-5472.can-05-1783 · Cited by 4,053

The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation

Chen, J.-F., Mandel, E. M., Thomson, J. M., Wu, Q., Callis, T. E., Hammond, S. M., Conlon, F. L., & Wang, D.-Z. (2006) · Nature Genetics · doi:10.1038/ng1725 · Cited by 2,779

microRNA Functions

Bushati, N., & Cohen, S. M. (2007) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.23.090506.123406 · Cited by 2,750

microRNAs as oncogenes and tumor suppressors

Zhang, B., Pan, X., Cobb, G. P., & Anderson, T. A. (2007) · Developmental Biology · doi:10.1016/j.ydbio.2006.08.028 · Cited by 2,749

MicroRNA-21 Is an Antiapoptotic Factor in Human Glioblastoma Cells

Chan, J. A., Krichevsky, A. M., & Kosik, K. S. (2005) · Cancer Research · doi:10.1158/0008-5472.can-05-0137 · Cited by 2,557

Transactivation of miR-34a by p53 broadly influences gene expression and promotes apoptosis

Chang, T.-C., Wentzel, E. A., Kent, O. A., Ramachandran, K., Mullendore, M., Lee, K. H., Feldmann, G., Yamakuchi, M., Ferlito, M., Lowenstein, C. J., et al. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.05.010 · Cited by 2,010

Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes

BASKERVILLE, S., & BARTEL, D. P. (2005) · RNA · doi:10.1261/rna.7240905 · Cited by 1,508

MicroRNAs Regulate Brain Morphogenesis in Zebrafish

Giraldez, A. J., Cinalli, R. M., Glasner, M. E., Enright, A. J., Thomson, J. M., Baskerville, S., Hammond, S. M., Bartel, D. P., & Schier, A. F. (2005) · Science · doi:10.1126/science.1109020 · Cited by 1,315

A novel and universal method for microRNA RT-qPCR data normalization

Mestdagh, P., Van Vlierberghe, P., De Weer, A., Muth, D., Westermann, F., Speleman, F., & Vandesompele, J. (2009) · Genome Biology · doi:10.1186/gb-2009-10-6-r64 · Cited by 1,079

Genomics of microRNA

Kim, V. N., & Nam, J.-W. (2006) · Trends in Genetics · doi:10.1016/j.tig.2006.01.003 · Cited by 894

The miR-17/92 cluster: a comprehensive update on its genomics, genetics, functions and increasingly important and numerous roles in health and disease

Mogilyansky, E., & Rigoutsos, I. (2013) · Cell Death & Differentiation · doi:10.1038/cdd.2013.125 · Cited by 889

Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues

Peltier, H. J., & Latham, G. J. (2008) · RNA · doi:10.1261/rna.939908 · Cited by 820

How microRNAs control cell division, differentiation and death

Miska, E. A. (2005) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2005.08.005 · Cited by 819

MicroRNAs accurately identify cancer tissue origin

Rosenfeld, N., Aharonov, R., Meiri, E., Rosenwald, S., Spector, Y., Zepeniuk, M., Benjamin, H., Shabes, N., Tabak, S., Levy, A., et al. (2008) · Nature Biotechnology · doi:10.1038/nbt1392 · Cited by 812

MicroRNA as Biomarkers and Diagnostics

Wang, J., Chen, J., & Sen, S. (2016) · Journal of Cellular Physiology · doi:10.1002/jcp.25056 · Cited by 793

Tunable lifetime multiplexing using luminescent nanocrystals

Lu, Y., Zhao, J., Zhang, R., Liu, Y., Liu, D., Goldys, E. M., Yang, X., Xi, P., Sunna, A., Lu, J., et al. (2014) · Nature Photonics · doi:10.1038/nphoton.2013.322 · Cited by 783

Reciprocal actions of REST and a microRNA promote neuronal identity

Conaco, C., Otto, S., Han, J.-J., & Mandel, G. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0511041103 · Cited by 736

MiRNA-Directed Regulation of VEGF and Other Angiogenic Factors under Hypoxia

Hua, Z., Lv, Q., Ye, W., Wong, C.-K. A., Cai, G., Gu, D., Ji, Y., Zhao, C., Wang, J., Yang, B. B., et al. (2006) · PLoS ONE · doi:10.1371/journal.pone.0000116 · Cited by 655

let-7 microRNAs in development, stem cells and cancer

Büssing, I., Slack, F. J., & Großhans, H. (2008) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2008.07.001 · Cited by 607

In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes

Kloosterman, W. P., Wienholds, E., de Bruijn, E., Kauppinen, S., & Plasterk, R. H. A. (2006) · Nature Methods · doi:10.1038/nmeth843 · Cited by 599

Antiquity of MicroRNAs and Their Targets in Land Plants

Axtell, M. J., & Bartel, D. P. (2005) · The Plant Cell · doi:10.1105/tpc.105.032185 · Cited by 593

microRNA expression in the prefrontal cortex of individuals with schizophrenia and schizoaffective disorder

Perkins, D. O., Jeffries, C. D., Jarskog, L. F., Thomson, J. M., Woods, K., Newman, M. A., Parker, J. S., Jin, J., & Hammond, S. M. (2007) · Genome Biology · doi:10.1186/gb-2007-8-2-r27 · Cited by 574

Role of miR-143 targeting KRAS in colorectal tumorigenesis

Chen, X., Guo, X., Zhang, H., Xiang, Y., Chen, J., Yin, Y., Cai, X., Wang, K., Wang, G., Ba, Y., et al. (2009) · Oncogene · doi:10.1038/onc.2008.474 · Cited by 549

MicroRNA expression in the adult mouse central nervous system

Bak, M., Silahtaroglu, A., Møller, M., Christensen, M., Rath, M. F., Skryabin, B., Tommerup, N., & Kauppinen, S. (2008) · RNA · doi:10.1261/rna.783108 · Cited by 463

MicroRNA—implications for cancer

Sassen, S., Miska, E. A., & Caldas, C. (2008) · Virchows Archiv · doi:10.1007/s00428-007-0532-2 · Cited by 441

MicroRNA profiling of the murine hematopoietic system

Monticelli, S., Ansel, K. M., Xiao, C., Socci, N. D., Krichevsky, A. M., Thai, T.-H., Rajewsky, N., Marks, D. S., Sander, C., Rajewsky, K., et al. (2005) · Genome Biology · doi:10.1186/gb-2005-6-8-r71 · Cited by 436

Interplay between miRNAs and human diseases

Paul, P., Chakraborty, A., Sarkar, D., Langthasa, M., Rahman, M., Bari, M., Singha, R. S., Malakar, A. K., & Chakraborty, S. (2018) · Journal of Cellular Physiology · doi:10.1002/jcp.25854 · Cited by 420

MicroRNAs as oncogenes

Hammond, S. M. (2006) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2005.12.005 · Cited by 406

Determinants of targeting by endogenous and exogenous microRNAs and siRNAs

Nielsen, C. B., Shomron, N., Sandberg, R., Hornstein, E., Kitzman, J., & Burge, C. B. (2007) · RNA · doi:10.1261/rna.768207 · Cited by 384

NONCODING RNAS IN THE MAMMALIAN CENTRAL NERVOUS SYSTEM

Cao, X., Yeo, G., Muotri, A. R., Kuwabara, T., & Gage, F. H. (2006) · Annual Review of Neuroscience · doi:10.1146/annurev.neuro.29.051605.112839 · Cited by 379

Expression profiling of microRNA using real-time quantitative PCR, how to use it and what is available

Benes, V., & Castoldi, M. (2010) · Methods · doi:10.1016/j.ymeth.2010.01.026 · Cited by 361

MicroRNA-regulated pathways associated with endometriosis

Ohlsson Teague, E. M. C., Van der Hoek, K. H., Van der Hoek, M. B., Perry, N., Wagaarachchi, P., Robertson, S. A., Print, C. G., & Hull, L. M. (2009) · Molecular Endocrinology · doi:10.1210/me.2008-0387 · Cited by 357

Development of a micro-array to detect human and mouse microRNAs and characterization of expression in human organs

Sun, Y. (2004) · Nucleic Acids Research · doi:10.1093/nar/gnh186 · Cited by 344

Distinctive MicroRNA Profiles Relating to Patient Survival in Esophageal Squamous Cell Carcinoma

Guo, Y., Chen, Z., Zhang, L., Zhou, F., Shi, S., Feng, X., Li, B., Meng, X., Ma, X., Luo, M., et al. (2008) · Cancer Research · doi:10.1158/0008-5472.can-06-4418 · Cited by 339

DNA methylation regulates microRNA expression

Han, L., Witmer, P. D. W., Casey, E., Valle, D., & Sukumar, S. (2007) · Cancer Biology & Therapy · doi:10.4161/cbt.6.8.4486 · Cited by 332

Biogenesis and regulation of the let-7 miRNAs and their functional implications

Lee, H., Han, S., Kwon, C. S., & Lee, D. (2016) · Protein & Cell · doi:10.1007/s13238-015-0212-y · Cited by 330

Label-Free and Enzyme-Free Homogeneous Electrochemical Biosensing Strategy Based on Hybridization Chain Reaction: A Facile, Sensitive, and Highly Specific MicroRNA Assay

Hou, T., Li, W., Liu, X., & Li, F. (2015) · Analytical Chemistry · doi:10.1021/acs.analchem.5b02790 · Cited by 307

The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition

Cloonan, N., Brown, M. K., Steptoe, A. L., Wani, S., Chan, W. L., Forrest, A. R., Kolle, G., Gabrielli, B., & Grimmond, S. M. (2008) · Genome Biology · doi:10.1186/gb-2008-9-8-r127 · Cited by 304

MicroRNAs regulate the expression of the alternative splicing factor nPTB during muscle development

Boutz, P. L., Chawla, G., Stoilov, P., & Black, D. L. (2007) · Genes & Development · doi:10.1101/gad.1500707 · Cited by 304

MicroRNA expression profiling using microarrays

Liu, C.-G., Calin, G. A., Volinia, S., & Croce, C. M. (2008) · Nature Protocols · doi:10.1038/nprot.2008.14 · Cited by 297

High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA

Mestdagh, P., Feys, T., Bernard, N., Guenther, S., Chen, C., Speleman, F., & Vandesompele, J. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn725 · Cited by 288

The MicroRNA-17-92 Family of MicroRNA Clusters in Development and Disease

Concepcion, C. P., Bonetti, C., & Ventura, A. (2012) · The Cancer Journal · doi:10.1097/ppo.0b013e318258b60a · Cited by 285

MicroRNA expression profiles in head and neck cancer cell lines

Tran, N., McLean, T., Zhang, X., Zhao, C. J., Thomson, J. M., O’Brien, C., & Rose, B. (2007) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2007.03.201 · Cited by 275

An optimized isolation and labeling platform for accurate microRNA expression profiling

SHINGARA, J., KEIGER, K., SHELTON, J., LAOSINCHAI-WOLF, W., POWERS, P., CONRAD, R., BROWN, D., & LABOURIER, E. (2005) · RNA · doi:10.1261/rna.2610405 · Cited by 260

Regulated expression of microRNAs in normal and polycythemia vera erythropoiesis

Bruchova, H., Yoon, D., Agarwal, A. M., Mendell, J., & Prchal, J. T. (2007) · Experimental Hematology · doi:10.1016/j.exphem.2007.08.021 · Cited by 214

Microarray based analysis of microRNA expression in rat cerebral cortex after traumatic brain injury

Lei, P., Li, Y., Chen, X., Yang, S., & Zhang, J. (2009) · Brain Research · doi:10.1016/j.brainres.2009.05.074 · Cited by 193

Up-regulation of miR-21 by HER2/neu signaling promotes cell invasion

Huang, T.-H., Wu, F., Loeb, G. B., Hsu, R., Heidersbach, A., Brincat, A., Horiuchi, D., Lebbink, R. J., Mo, Y.-Y., Goga, A., et al. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.006676 · Cited by 191

MicroRNAs in Skeletal and Cardiac Muscle Development

Callis, T. E., Chen, J.-F., & Wang, D.-Z. (2007) · DNA and Cell Biology · doi:10.1089/dna.2006.0556 · Cited by 173

miR‐338‐3p suppresses neuroblastoma proliferation, invasion and migration through targeting PREX2a

Chen, X., Pan, M., Han, L., Lu, H., Hao, X., & Dong, Q. (2013) · FEBS Letters · doi:10.1016/j.febslet.2013.09.044 · Cited by 100

Expression profiling of microRNA using oligo DNA arrays

Liu, C.-G., Spizzo, R., Calin, G. A., & Croce, C. M. (2008) · Methods · doi:10.1016/j.ymeth.2007.10.010 · Cited by 84

MicroRNA expression distinguishes SCLC from NSCLC lung tumor cells and suggests a possible pathological relationship between SCLCs and NSCLCs

Du, L., Schageman, J. J., Irnov, Girard, L., Hammond, S. M., Minna, J. D., Gazdar, A. F., & Pertsemlidis, A. (2010) · Journal of Experimental & Clinical Cancer Research · doi:10.1186/1756-9966-29-75 · Cited by 73

Integrating microRNA and mRNA expression profiles of neuronal progenitors to identify regulatory networks underlying the onset of cortical neurogenesis

Nielsen, J. A., Lau, P., Maric, D., Barker, J. L., & Hudson, L. D. (2009) · BMC Neuroscience · doi:10.1186/1471-2202-10-98 · Cited by 66

Regulation of the tumour suppressor PDCD4 by miR-499 and miR-21 in oropharyngeal cancers

Zhang, X., Gee, H., Rose, B., Lee, C. S., Clark, J., Elliott, M., Gamble, J. R., Cairns, M. J., Harris, A., Khoury, S., et al. (2016) · BMC Cancer · doi:10.1186/s12885-016-2109-4 · Cited by 65

Interrogation of brain miRNA and mRNA expression profiles reveals a molecular regulatory network that is perturbed by mutant huntingtin

Jin, J., Cheng, Y., Zhang, Y., Wood, W., Peng, Q., Hutchison, E., Mattson, M. P., Becker, K. G., & Duan, W. (2012) · Journal of Neurochemistry · doi:10.1111/j.1471-4159.2012.07925.x · Cited by 54

Matrigel Basement Membrane Matrix influences expression of microRNAs in cancer cell lines

Price, K. J., Tsykin, A., Giles, K. M., Sladic, R. T., Epis, M. R., Ganss, R., Goodall, G. J., & Leedman, P. J. (2012) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2012.09.059 · Cited by 49

MicroRNA expression profiles in conventional and micropropagated strawberry (Fragaria × ananassa Duch.) plants

Li, H., Zhang, Z., Huang, F., Chang, L., & Ma, Y. (2009) · Plant Cell Reports · doi:10.1007/s00299-009-0693-3 · Cited by 46

Identification of suitable endogenous control genes for microRNA expression profiling of childhood medulloblastoma and human neural stem cells

Genovesi, L. A., Anderson, D., Carter, K. W., Giles, K. M., & Dallas, P. B. (2012) · BMC Research Notes · doi:10.1186/1756-0500-5-507 · Cited by 23