The DOI matches its Crossref record.
Generating samples under a Wright–Fisher neutral model of genetic variation
Open accessAbstract
Summary: A Monte Carlo computer program is available to generate samples drawn from a population evolving according to a Wright–Fisher neutral model. The program assumes an infinite-sites model of mutation, and allows recombination, gene conversion, symmetric migration among subpopulations, and a variety of demographic histories. The samples produced can be used to investigate the sampling properties of any sample statistic under these neutral models. Availability: The source code for the program (in the language C) is available at http://home.uchicago.edu/~rhudson1/source/mksamples.html. Contact: rr-hudson@uchicago.edu
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cited by
A draft sequence of the Neandertal genome
Green, R. E., Krause, J., Briggs, A. W., Maricic, T., Stenzel, U., Kircher, M., Patterson, N., Li, H., Zhai, W., Fritz, M. H.-Y., et al. (2010) · Science · doi:10.1126/science.1188021 · Cited by 4,318
Ancient Admixture in Human History
Patterson, N., Moorjani, P., Luo, Y., Mallick, S., Rohland, N., Zhan, Y., Genschoreck, T., Webster, T., & Reich, D. (2012) · Genetics · doi:10.1534/genetics.112.145037 · Cited by 2,848
Inference of population splits and mixtures from genome-wide allele frequency data
Pickrell, J. K., & Pritchard, J. K. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002967 · Cited by 2,731
Inference of human population history from individual whole-genome sequences
Li, H., & Durbin, R. (2011) · Nature · doi:10.1038/nature10231 · Cited by 2,590
Gutenkunst, R. N., Hernandez, R. D., Williamson, S. H., & Bustamante, C. D. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000695 · Cited by 1,906
“In our applications, we estimate variances using simulations from the coalescent simulator ms [35].”
MethodInfluentialGenABEL: an R library for genome-wide association analysis
Aulchenko, Y. S., Ripke, S., Isaacs, A., & van Duijn, C. M. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm108 · Cited by 1,836
Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude
Yi, X., Liang, Y., Huerta-Sanchez, E., Jin, X., Cuo, Z. X. P., Pool, J. E., Xu, X., Jiang, H., Vinckenbosch, N., Korneliussen, T. S., et al. (2010) · Science · doi:10.1126/science.1190371 · Cited by 1,611
Testing for ancient admixture between closely related populations
Durand, E. Y., Patterson, N., Reich, D., & Slatkin, M. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msr048 · Cited by 1,375
Approximate Bayesian Computation (ABC) in practice
Csilléry, K., Blum, M. G. B., Gaggiotti, O. E., & François, O. (2010) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2010.04.001 · Cited by 1,302
Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA
Huerta-Sánchez, E., Jin, X., Asan, Bianba, Z., Peter, B. M., Vinckenbosch, N., Liang, Y., Yi, X., He, M., Somel, M., et al. (2014) · Nature · doi:10.1038/nature13408 · Cited by 1,208
Inference of Population Structure using Dense Haplotype Data
Lawson, D. J., Hellenthal, G., Myers, S., & Falush, D. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002453 · Cited by 1,188
The genomic landscape of Neanderthal ancestry in present-day humans
Sankararaman, S., Mallick, S., Dannemann, M., Prüfer, K., Kelso, J., Pääbo, S., Patterson, N., & Reich, D. (2014) · Nature · doi:10.1038/nature12961 · Cited by 1,107
An RNA gene expressed during cortical development evolved rapidly in humans
Pollard, K. S., Salama, S. R., Lambert, N., Lambot, M.-A., Coppens, S., Pedersen, J. S., Katzman, S., King, B., Onodera, C., Siepel, A., et al. (2006) · Nature · doi:10.1038/nature05113 · Cited by 1,005
Gao, X., Starmer, J., & Martin, E. R. (2008) · Genetic Epidemiology · doi:10.1002/gepi.20310 · Cited by 849
Recalibrating equus evolution using the genome sequence of an early middle pleistocene horse
Orlando, L., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., et al. (2013) · Nature · doi:10.1038/nature12323 · Cited by 841
A high-coverage Neandertal genome from Vindija Cave in Croatia
Prüfer, K., de Filippo, C., Grote, S., Mafessoni, F., Korlević, P., Hajdinjak, M., Vernot, B., Skov, L., Hsieh, P., Peyrégne, S., et al. (2017) · Science · doi:10.1126/science.aao1887 · Cited by 719
Genomic islands of speciation in Anopheles gambiae
Turner, T. L., Hahn, M. W., & Nuzhdin, S. V. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030285 · Cited by 734
Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
Rosenberg, N. A., & Nordborg, M. (2002) · Nature Reviews Genetics · doi:10.1038/nrg795 · Cited by 750
Calibrating a coalescent simulation of human genome sequence variation
Schaffner, S. F., Foo, C., Gabriel, S., Reich, D., Daly, M. J., & Altshuler, D. (2005) · Genome Research · doi:10.1101/gr.3709305 · Cited by 616
Resurrecting Surviving Neandertal Lineages from Modern Human Genomes
Vernot, B., & Akey, J. M. (2014) · Science · doi:10.1126/science.1245938 · Cited by 562
Ancient gene flow from early modern humans into Eastern Neanderthals
Kuhlwilm, M., Gronau, I., Hubisz, M. J., de Filippo, C., Prado-Martinez, J., Kircher, M., Fu, Q., Burbano, H. A., Lalueza-Fox, C., de la Rasilla, M., et al. (2016) · Nature · doi:10.1038/nature16544 · Cited by 577
Recent Explosive Human Population Growth Has Resulted in an Excess of Rare Genetic Variants
Keinan, A., & Clark, A. G. (2012) · Science · doi:10.1126/science.1217283 · Cited by 548
Localizing Recent Adaptive Evolution in the Human Genome.
Williamson, S. H., Hubisz, M. J., Clark, A. G., Payseur, B. A., Bustamante, C. D., & Nielsen, R. (2007) · PLoS Genetics · doi:10.1371/journal.pgen.0030090 · Cited by 507
Shedding light on the grey zone of speciation along a continuum of genomic divergence
Roux, C., Fraïsse, C., Romiguier, J., Anciaux, Y., Galtier, N., & Bierne, N. (2016) · PLOS Biology · doi:10.1371/journal.pbio.2000234 · Cited by 525
Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens
Nédélec, Y., Sanz, J., Baharian, G., Szpiech, Z. A., Pacis, A., Dumaine, A., Grenier, J.-C., Freiman, A., Sams, A. J., Hebert, S., et al. (2016) · Cell · doi:10.1016/j.cell.2016.09.025 · Cited by 512
A new approach for using genome scans to detect recent positive selection in the human genome
Tang, K., Thornton, K. R., & Stoneking, M. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050171 · Cited by 489
An evaluation of statistical approaches to rare variant analysis in genetic association studies
Morris, A. P., & Zeggini, E. (2010) · Genetic Epidemiology · doi:10.1002/gepi.20450 · Cited by 481
Supervised Machine Learning for Population Genetics: A New Paradigm
Schrider, D. R., & Kern, A. D. (2018) · Trends in Genetics · doi:10.1016/j.tig.2017.12.005 · Cited by 453
Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals
Vernot, B., Tucci, S., Kelso, J., Schraiber, J. G., Wolf, A. B., Gittelman, R. M., Dannemann, M., Grote, S., McCoy, R. C., Norton, H., et al. (2016) · Science · doi:10.1126/science.aad9416 · Cited by 459
Recent human effective population size estimated from linkage disequilibrium
Tenesa, A., Navarro, P., Hayes, B. J., Duffy, D. L., Clarke, G. M., Goddard, M. E., & Visscher, P. M. (2007) · Genome Research · doi:10.1101/gr.6023607 · Cited by 438
Phylogenomics reveals three sources of adaptive variation during a rapid radiation
Pease, J. B., Haak, D. C., Hahn, M. W., & Moyle, L. C. (2016) · PLOS Biology · doi:10.1371/journal.pbio.1002379 · Cited by 432
Genomic and archaeological evidence suggest a dual origin of domestic dogs
Frantz, L. A. F., Mullin, V. E., Pionnier-Capitan, M., Lebrasseur, O., Ollivier, M., Perri, A., Linderholm, A., Mattiangeli, V., Teasdale, M. D., Dimopoulos, E. A., et al. (2016) · Science · doi:10.1126/science.aaf3161 · Cited by 430
Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears
Liu, S., Lorenzen, E. D., Fumagalli, M., Li, B., Harris, K., Xiong, Z., Zhou, L., Korneliussen, T. S., Somel, M., Babbitt, C., et al. (2014) · Cell · doi:10.1016/j.cell.2014.03.054 · Cited by 411
Identifying Recent Adaptations in Large-Scale Genomic Data
Grossman, S. R., Andersen, K. G., Shlyakhter, I., Tabrizi, S., Winnicki, S., Yen, A., Park, D. J., Griesemer, D., Karlsson, E. K., Wong, S. H., et al. (2013) · Cell · doi:10.1016/j.cell.2013.01.035 · Cited by 368
Genetic Evidence for Recent Population Mixture in India
Moorjani, P., Thangaraj, K., Patterson, N., Lipson, M., Loh, P.-R., Govindaraj, P., Berger, B., Reich, D., & Singh, L. (2013) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2013.07.006 · Cited by 350
Tracking footprints of artificial selection in the dog genome
Akey, J. M., Ruhe, A. L., Akey, D. T., Wong, A. K., Connelly, C. F., Madeoy, J., Nicholas, T. J., & Neff, M. W. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0909918107 · Cited by 350
Multiple Deeply Divergent Denisovan Ancestries in Papuans
Jacobs, G. S., Hudjashov, G., Saag, L., Kusuma, P., Darusallam, C. C., Lawson, D. J., Mondal, M., Pagani, L., Ricaut, F.-X., Stoneking, M., et al. (2019) · Cell · doi:10.1016/j.cell.2019.02.035 · Cited by 346
Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences
The 1000 Genomes Project Consortium, Poznik, G. D., Xue, Y., Mendez, F. L., Willems, T. F., Massaia, A., Wilson Sayres, M. A., Ayub, Q., McCarthy, S. A., Narechania, A., et al. (2016) · Nature Genetics · doi:10.1038/ng.3559 · Cited by 331
The genetic prehistory of the New World Arctic
Raghavan, M., DeGiorgio, M., Albrechtsen, A., Moltke, I., Skoglund, P., Korneliussen, T. S., Grønnow, B., Appelt, M., Gulløv, H. C., Friesen, T. M., et al. (2014) · Science · doi:10.1126/science.1255832 · Cited by 329
Origins and genetic legacy of prehistoric dogs
Bergström, A., Frantz, L., Schmidt, R., Ersmark, E., Lebrasseur, O., Girdland-Flink, L., Lin, A. T., Storå, J., Sjögren, K.-G., Anthony, D., et al. (2020) · Science · doi:10.1126/science.aba9572 · Cited by 297
Genomic structure in Europeans dating back at least 36,200 years
Seguin-Orlando, A., Korneliussen, T. S., Sikora, M., Malaspinas, A.-S., Manica, A., Moltke, I., Albrechtsen, A., Ko, A., Margaryan, A., Moiseyev, V., et al. (2014) · Science · doi:10.1126/science.aaa0114 · Cited by 315
Genomic regions exhibiting positive selection identified from dense genotype data
Carlson, C. S., Thomas, D. J., Eberle, M. A., Swanson, J. E., Livingston, R. J., Rieder, M. J., & Nickerson, D. A. (2005) · Genome Research · doi:10.1101/gr.4326505 · Cited by 298
Adaptive evolution of multiple traits through multiple mutations at a single gene
Linnen, C. R., Poh, Y.-P., Peterson, B. K., Barrett, R. D. H., Larson, J. G., Jensen, J. D., & Hoekstra, H. E. (2013) · Science · doi:10.1126/science.1233213 · Cited by 292
Possible Ancestral Structure in Human Populations
Plagnol, V., & Wall, J. D. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020105 · Cited by 275
Voight, B. F., Adams, A. M., Frisse, L. A., Qian, Y., Hudson, R. R., & Di Rienzo, A. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0507325102 · Cited by 262
Self-citationDetection and Polarization of Introgression in a Five-Taxon Phylogeny
Pease, J. B., & Hahn, M. W. (2015) · Systematic Biology · doi:10.1093/sysbio/syv023 · Cited by 268
Genomic diversity and evolution of the head crest in the rock pigeon
Shapiro, M. D., Kronenberg, Z., Li, C., Domyan, E. T., Pan, H., Campbell, M., Tan, H., Huff, C. D., Hu, H., Vickrey, A. I., et al. (2013) · Science · doi:10.1126/science.1230422 · Cited by 265
Evidence that adaptation in Drosophila is not limited by mutation at single sites
Karasov, T., Messer, P. W., & Petrov, D. A. (2010) · PLoS Genetics · doi:10.1371/journal.pgen.1000924 · Cited by 257
Thornton, K., & Andolfatto, P. (2006) · Genetics · doi:10.1534/genetics.105.048223 · Cited by 256
Gene Losses during Human Origins
Wang, X., Grus, W. E., & Zhang, J. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040052 · Cited by 246
Evolutionary and Population Genomics of the Cavity Causing Bacteria Streptococcus mutans
Cornejo, O. E., Lefébure, T., Pavinski Bitar, P. D., Lang, P., Richards, V. P., Eilertson, K., Do, T., Beighton, D., Zeng, L., Ahn, S.-J., et al. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mss278 · Cited by 198
Boitard, S., Rodríguez, W., Jay, F., Mona, S., & Austerlitz, F. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1005877 · Cited by 190
Genetic adaptation associated with genome-doubling in autotetraploid Arabidopsis arenosa
Hollister, J. D., Arnold, B. J., Svedin, E., Xue, K. S., Dilkes, B. P., & Bomblies, K. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1003093 · Cited by 182
DeGiorgio, M., Jakobsson, M., & Rosenberg, N. A. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0903341106 · Cited by 175
Moorjani, P., Sankararaman, S., Fu, Q., Przeworski, M., Patterson, N., & Reich, D. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1514696113 · Cited by 174
Context Dependence, Ancestral Misidentification, and Spurious Signatures of Natural Selection
Hernandez, R. D., Williamson, S. H., & Bustamante, C. D. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm108 · Cited by 169
Evans, P. D., Mekel-Bobrov, N., Vallender, E. J., Hudson, R. R., & Lahn, B. T. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0606966103 · Cited by 153
Self-citationMondal, M., Casals, F., Xu, T., Dall'Olio, G. M., Pybus, M., Netea, M. G., Comas, D., Laayouni, H., Li, Q., Majumder, P. P., et al. (2016) · Nature Genetics · doi:10.1038/ng.3621 · Cited by 149
Complex History of Admixture between Modern Humans and Neandertals
Vernot, B., & Akey, J. M. (2015) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2015.01.006 · Cited by 149
Sams, A. J., Dumaine, A., Nédélec, Y., Yotova, V., Alfieri, C., Tanner, J. E., Messer, P. W., & Barreiro, L. B. (2016) · Genome Biology · doi:10.1186/s13059-016-1098-6 · Cited by 140
Li, B., & Leal, S. M. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000481 · Cited by 142
A global view of the OCA2-HERC2 region and pigmentation
Donnelly, M. P., Paschou, P., Grigorenko, E., Gurwitz, D., Barta, C., Lu, R.-B., Zhukova, O. V., Kim, J.-J., Siniscalco, M., New, M., et al. (2012) · Human Genetics · doi:10.1007/s00439-011-1110-x · Cited by 131
Engelhardt, B. E., & Stephens, M. (2010) · PLoS Genetics · doi:10.1371/journal.pgen.1001117 · Cited by 128
Mondal, M., Bertranpetit, J., & Lao, O. (2019) · Nature Communications · doi:10.1038/s41467-018-08089-7 · Cited by 124
Joint estimates of heterozygosity and runs of homozygosity for modern and ancient samples
Renaud, G., Hanghøj, K., Korneliussen, T. S., Willerslev, E., & Orlando, L. (2019) · Genetics · doi:10.1534/genetics.119.302057 · Cited by 101
Demographically-based evaluation of genomic regions under selection in domestic dogs
Freedman, A. H., Schweizer, R. M., Ortega-Del Vecchyo, D., Han, E., Davis, B. W., Gronau, I., Silva, P. M., Galaverni, M., Fan, Z., Marx, P., et al. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1005851 · Cited by 104
Ancient Structure in Africa Unlikely to Explain Neanderthal and Non-African Genetic Similarity
Yang, M. A., Malaspinas, A.-S., Durand, E. Y., & Slatkin, M. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/mss117 · Cited by 101
Genetic signature of natural selection in first Americans
G. Amorim, C. E., Nunes, K., Meyer, D., Comas, D., Bortolini, M. C., Salzano, F. M., & Hünemeier, T. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1620541114 · Cited by 92
Finding Haplotype Block Boundaries by Using the Minimum-Description-Length Principle
Anderson, E. C., & Novembre, J. (2003) · The American Journal of Human Genetics · doi:10.1086/377106 · Cited by 90
Evidence for recent positive selection at the human AIM1 locus in a European population
Soejima, M., Tachida, H., Ishida, T., Sano, A., & Koda, Y. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msj018 · Cited by 84
Wang, M.-S., Zhang, R.-W., Su, L.-Y., Li, Y., Peng, M.-S., Liu, H.-Q., Zeng, L., Irwin, D. M., Du, J.-L., Yao, Y.-G., et al. (2016) · Cell Research · doi:10.1038/cr.2016.44 · Cited by 85
Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe
Peyrégne, S., Slon, V., Mafessoni, F., de Filippo, C., Hajdinjak, M., Nagel, S., Nickel, B., Essel, E., Le Cabec, A., Wehrberger, K., et al. (2019) · Science Advances · doi:10.1126/sciadv.aaw5873 · Cited by 82
Kim, B. Y., & Lohmueller, K. E. (2015) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2014.12.029 · Cited by 82
Interpreting the estimated timing of migration events between hybridizing species
STRASBURG, J. L., & RIESEBERG, L. H. (2011) · Molecular Ecology · doi:10.1111/j.1365-294x.2011.05048.x · Cited by 79
Understanding the accuracy of statistical haplotype inference with sequence data of known phase
Andrés, A. M., Clark, A. G., Shimmin, L., Boerwinkle, E., Sing, C. F., & Hixson, J. E. (2007) · Genetic Epidemiology · doi:10.1002/gepi.20185 · Cited by 68
Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans
Racimo, F., Renaud, G., & Slatkin, M. (2016) · PLOS Genetics · doi:10.1371/journal.pgen.1005972 · Cited by 56
Gene-centric gene–gene interaction: a model-based kernel machine method
Li, S., & Cui, Y. (2012) · The Annals of Applied Statistics · doi:10.1214/12-aoas545 · Cited by 51
Population history and gene divergence in native Mexicans inferred from 76 human exomes
Ávila-Arcos, M. C., McManus, K. F., Sandoval, K., Rodríguez-Rodríguez, J. E., Villa-Islas, V., Martin, A. R., Luisi, P., Peñaloza-Espinosa, R. I., Eng, C., Huntsman, S., et al. (2020) · Molecular Biology and Evolution · doi:10.1093/molbev/msz282 · Cited by 50
Remigereau, M.-S., Lakis, G., Rekima, S., Leveugle, M., Fontaine, M. C., Langin, T., Sarr, A., & Robert, T. (2011) · PLoS ONE · doi:10.1371/journal.pone.0022404 · Cited by 48
The State of Software for Evolutionary Biology
Darriba, D., Flouri, T., & Stamatakis, A. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msy014 · Cited by 48
Currat, M., Arenas, M., Quilodràn, C. S., Excoffier, L., & Ray, N. (2019) · Bioinformatics · doi:10.1093/bioinformatics/btz311 · Cited by 47
Adaptive variation regulates the expression of the human SGK1 gene in response to stress
Luca, F., Kashyap, S., Southard, C., Zou, M., Witonsky, D., Di Rienzo, A., & Conzen, S. D. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000489 · Cited by 45
“To estimate the significance of Tajima’s D and Fay and Wu’s H, we performed 1,000 neutral simulations for each population sample separately using the program MS [87].”
MethodEarly modern human dispersal from Africa: genomic evidence for multiple waves of migration
Tassi, F., Ghirotto, S., Mezzavilla, M., Vilaça, S. T., De Santi, L., & Barbujani, G. (2015) · Investigative Genetics · doi:10.1186/s13323-015-0030-2 · Cited by 41
Lin, W., & Schaid, D. J. (2009) · Genetic Epidemiology · doi:10.1002/gepi.20364 · Cited by 35
Lee, S. H., Nyholt, D. R., Macgregor, S., Henders, A. K., Zondervan, K. T., Montgomery, G. W., & Visscher, P. M. (2010) · Genetic Epidemiology · doi:10.1002/gepi.20541 · Cited by 33
Albert, F. W., Hodges, E., Jensen, J. D., Besnier, F., Xuan, Z., Rooks, M., Bhattacharjee, A., Brizuela, L., Good, J. M., Green, R. E., et al. (2011) · Heredity · doi:10.1038/hdy.2011.4 · Cited by 28
Nevado, B., Harris, S. A., Beaumont, M. A., & Hiscock, S. J. (2020) · Molecular Ecology · doi:10.1111/mec.15630 · Cited by 26
Genomic signatures associated with transitions to viviparity in cyprinodontiformes
Yusuf, L. H., Saldívar Lemus, Y., Thorpe, P., Macías Garcia, C., & Ritchie, M. G. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad208 · Cited by 22
Taskent, O., Lin, Y. L., Patramanis, I., Pavlidis, P., & Gokcumen, O. (2020) · Genetics · doi:10.1534/genetics.120.303167 · Cited by 20
Finding Associations in Dense Genetic Maps: A Genetic Algorithm Approach
Clark, T. G., De Iorio, M., Griffiths, R. C., & Farrall, M. (2005) · Human Heredity · doi:10.1159/000088845 · Cited by 18
Legofit: estimating population history from genetic data
Rogers, A. R. (2019) · BMC Bioinformatics · doi:10.1186/s12859-019-3154-1 · Cited by 17
Reply to ‘No evidence for unknown archaic ancestry in South Asia’
Mondal, M., Casals, F., Majumder, P. P., & Bertranpetit, J. (2018) · Nature Genetics · doi:10.1038/s41588-018-0280-z · Cited by 8
Cox, M. P. (2009) · Human Biology · doi:10.3378/027.081.0631 · Cited by 3
Metadata
- Authors
- Hudson, R. R.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2002-02-01
- Volume
- 18
- Issue
- 2
- Pages
- 337-338
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2134599124
- Cited by
- 2,364
- References
- 0
- FWCI
- 25.68
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.