UPARSE: highly accurate OTU sequences from microbial amplicon reads

QIIME allows analysis of high-throughput community sequencing data

Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887

Structure, function and diversity of the healthy human microbiome

The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., Keller, K., Huber, T., Dalevi, D., Hu, P., & Andersen, G. L. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.03006-05 · Cited by 10,891

A framework for human microbiome research

The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11209 · Cited by 2,650

PANDAseq: paired-end assembler for Illumina sequences

Masella, A. P., Bartram, A. K., Truszkowski, J. M., Brown, D. G., & Neufeld, J. D. (2012) · BMC Bioinformatics · doi:10.1186/1471-2105-13-31 · Cited by 2,132

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

Schloss, P. D., Gevers, D., & Westcott, S. L. (2011) · PLoS ONE · doi:10.1371/journal.pone.0027310 · Cited by 2,112

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

Huse, S. M., Welch, D. M., Morrison, H. G., & Sogin, M. L. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2010.02193.x · Cited by 1,346

Giardia duodenalis induces pathogenic dysbiosis of human intestinal microbiota biofilms

Beatty, J. K., Akierman, S. V., Motta, J.-P., Muise, S., Workentine, M. L., Harrison, J. J., Bhargava, A., Beck, P. L., Rioux, K. P., McKnight, G. W., et al. (2017) · International Journal for Parasitology · doi:10.1016/j.ijpara.2016.11.010 · Cited by 157

Intratumor microbiome features reveal antitumor potentials of intrahepatic cholangiocarcinoma

Chai, X., Wang, J., Li, H., Gao, C., Li, S., Wei, C., Huang, J., Tian, Y., Yuan, J., Lu, J., et al. (2023) · Gut Microbes · doi:10.1080/19490976.2022.2156255 · Cited by 152

Increased gut permeability in cancer cachexia: mechanisms and clinical relevance

Bindels, L. B., Neyrinck, A. M., Loumaye, A., Catry, E., Walgrave, H., Cherbuy, C., Leclercq, S., Van Hul, M., Plovier, H., Pachikian, B., et al. (2018) · Oncotarget · doi:10.18632/oncotarget.24804 · Cited by 147

Silage fermentation and bacterial community of bur clover, annual ryegrass and their mixtures prepared with microbial inoculant and chemical additive

Li, P., Zhang, Y., Gou, W., Cheng, Q., Bai, S., & Cai, Y. (2019) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2018.11.009 · Cited by 149

Dynamics of microbial community during ensiling direct-cut alfalfa with and without LAB inoculant and sugar

Zheng, M. L., Niu, D. Z., Jiang, D., Zuo, S. S., & Xu, C. C. (2017) · Journal of Applied Microbiology · doi:10.1111/jam.13456 · Cited by 147

Fecal Microbiome Transplantation from Children with Autism Spectrum Disorder Modulates Tryptophan and Serotonergic Synapse Metabolism and Induces Altered Behaviors in Germ-Free Mice

Xiao, L., Yan, J., Yang, T., Zhu, J., Li, T., Wei, H., & Chen, J. (2021) · mSystems · doi:10.1128/msystems.01343-20 · Cited by 141

Saponin-induced shifts in the rumen microbiome and metabolome of young cattle

Wang, B., Ma, M. P., Diao, Q. Y., & Tu, Y. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.00356 · Cited by 140

Advanced glycation end products dietary restriction effects on bacterial gut microbiota in peritoneal dialysis patients; a randomized open label controlled trial

Yacoub, R., Nugent, M., Cai, W., Nadkarni, G. N., Chaves, L. D., Abyad, S., Honan, A. M., Thomas, S. A., Zheng, W., Valiyaparambil, S. A., et al. (2017) · PLOS ONE · doi:10.1371/journal.pone.0184789 · Cited by 139

Tissue-Associated Bacterial Alterations in Rectal Carcinoma Patients Revealed by 16S rRNA Community Profiling

Thomas, A. M., Jesus, E. C., Lopes, A., Aguiar, S., Begnami, M. D., Rocha, R. M., Carpinetti, P. A., Camargo, A. A., Hoffmann, C., Freitas, H. C., et al. (2016) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2016.00179 · Cited by 136

Endophytic bacterial and fungal microbiota in sprouts, roots, and stems of rice (Oryza sativa L.)

Wang, W., Zhai, Y., Cao, L., Tan, H., & Zhang, R. (2016) · Microbiological Research · doi:10.1016/j.micres.2016.04.009 · Cited by 136

Novel compound FLZ alleviates rotenone-induced PD mouse model by suppressing TLR4/MyD88/NF-κB pathway through microbiota–gut–brain axis

Zhao, Z., Li, F., Ning, J., Peng, R., Shang, J., Liu, H., Shang, M., Bao, X.-Q., & Zhang, D. (2021) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2021.03.020 · Cited by 137

Gut microbiome diversity is an independent predictor of survival in cervical cancer patients receiving chemoradiation

Sims, T. T., El Alam, M. B., Karpinets, T. V., Dorta-Estremera, S., Hegde, V. L., Nookala, S., Yoshida-Court, K., Wu, X., Biegert, G. W. G., Delgado Medrano, A. Y., et al. (2021) · Communications Biology · doi:10.1038/s42003-021-01741-x · Cited by 135

Diverse groups of fungi are associated with plastics in the surface waters of the Western South Atlantic and the Antarctic Peninsula

Lacerda, A. L. D. F., Proietti, M. C., Secchi, E. R., & Taylor, J. D. (2020) · Molecular Ecology · doi:10.1111/mec.15444 · Cited by 129

Patterns in the skin microbiota differ in children and teenagers between rural and urban environments

Lehtimäki, J., Karkman, A., Laatikainen, T., Paalanen, L., von Hertzen, L., Haahtela, T., Hanski, I., & Ruokolainen, L. (2017) · Scientific Reports · doi:10.1038/srep45651 · Cited by 131

The impacts of organic amendments: do they confer stability against drought on the soil microbial community?

Bastida, F., Torres, I. F., Hernández, T., & García, C. (2017) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2017.06.012 · Cited by 129

Predicting Clinical Outcomes of Cirrhosis Patients with Hepatic Encephalopathy from the Fecal Microbiome

Sung, C. M., Lin, Y.-F., Chen, K.-F., Ke, H.-M., Huang, H.-Y., Gong, Y.-N., Tsai, W.-S., You, J.-F., Lu, M. J., Cheng, H.-T., et al. (2019) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2019.04.008 · Cited by 127

Vildagliptin increases butyrate-producing bacteria in the gut of diabetic rats

Zhang, Q., Xiao, X., Li, M., Yu, M., Ping, F., Zheng, J., Wang, T., & Wang, X. (2017) · PLOS ONE · doi:10.1371/journal.pone.0184735 · Cited by 124

The human gut microbiota in people with amyotrophic lateral sclerosis

Nicholson, K., Bjornevik, K., Abu-Ali, G., Chan, J., Cortese, M., Dedi, B., Jeon, M., Xavier, R., Huttenhower, C., Ascherio, A., et al. (2021) · Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration · doi:10.1080/21678421.2020.1828475 · Cited by 123

Hypoglycemic and hypolipidemic effect of S-allyl-cysteine sulfoxide (alliin) in DIO mice

Zhai, B., Zhang, C., Sheng, Y., Zhao, C., He, X., Xu, W., Huang, K., & Luo, Y. (2018) · Scientific Reports · doi:10.1038/s41598-018-21421-x · Cited by 123

Probiotic yogurt and acidified milk similarly reduce postprandial inflammation and both alter the gut microbiota of healthy, young men

Burton, K. J., Rosikiewicz, M., Pimentel, G., Bütikofer, U., von Ah, U., Voirol, M.-J., Croxatto, A., Aeby, S., Drai, J., McTernan, P. G., et al. (2017) · British Journal of Nutrition · doi:10.1017/s0007114517000885 · Cited by 121

Interventional Influence of the Intestinal Microbiome Through Dietary Intervention and Bowel Cleansing Might Improve Motor Symptoms in Parkinson’s Disease

Hegelmaier, T., Lebbing, M., Duscha, A., Tomaske, L., Tönges, L., Holm, J. B., Bjørn Nielsen, H., Gatermann, S. G., Przuntek, H., & Haghikia, A. (2020) · Cells · doi:10.3390/cells9020376 · Cited by 118

The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in mice fed a methionine-choline deficient diet

Somm, E., Montandon, S. A., Loizides-Mangold, U., Gaïa, N., Lazarevic, V., De Vito, C., Perroud, E., Bochaton-Piallat, M.-L., Dibner, C., Schrenzel, J., et al. (2021) · Translational Research · doi:10.1016/j.trsl.2020.07.008 · Cited by 118

Lacto-fermented sauerkraut improves symptoms in IBS patients independent of product pasteurisation-a pilot study

Nielsen, E. S., Garnås, E., Jensen, K. J., Hansen, L. H., Olsen, P. S., Ritz, C., Krych, L., & Nielsen, D. S. (2018) · Food & Function · doi:10.1039/c8fo00968f · Cited by 113

Microbiota modification by probiotic supplementation reduces colitis associated colon cancer in mice

Mendes, M. C. S., Paulino, D. S., Brambilla, S. R., Camargo, J. A., Persinoti, G. F., & Carvalheira, J. B. C. (2018) · World Journal of Gastroenterology · doi:10.3748/wjg.v24.i18.1995 · Cited by 116

Effect of vitamin A supplementation on gut microbiota in children with autism spectrum disorders - a pilot study

Liu, J., Liu, X., Xiong, X.-Q., Yang, T., Cui, T., Hou, N.-L., Lai, X., Liu, S., Guo, M., Liang, X.-H., et al. (2017) · BMC Microbiology · doi:10.1186/s12866-017-1096-1 · Cited by 115

Klebsiella oxytoca expands in cancer cachexia and acts as a gut pathobiont contributing to intestinal dysfunction

Pötgens, S. A., Brossel, H., Sboarina, M., Catry, E., Cani, P. D., Neyrinck, A. M., Delzenne, N. M., & Bindels, L. B. (2018) · Scientific Reports · doi:10.1038/s41598-018-30569-5 · Cited by 114

Biochar addition to forest plantation soil enhances phosphorus availability and soil bacterial community diversity

Zhou, C., Heal, K., Tigabu, M., Xia, L., Hu, H., Yin, D., & Ma, X. (2020) · Forest Ecology and Management · doi:10.1016/j.foreco.2019.117635 · Cited by 115

Alteration of the gut microbiome in first-episode drug-naive and chronic medicated schizophrenia correlate with regional brain volumes

Ma, X., Asif, H., Dai, L., He, Y., Zheng, W., Wang, D., Ren, H., Tang, J., Li, C., Jin, K., et al. (2020) · Journal of Psychiatric Research · doi:10.1016/j.jpsychires.2020.02.005 · Cited by 114

Photo-produced aromatic compounds stimulate microbial degradation of dissolved organic carbon in thermokarst lakes

Hu, J., Kang, L., Li, Z., Feng, X., Liang, C., Wu, Z., Zhou, W., Liu, X., Yang, Y., & Chen, L. (2023) · Nature Communications · doi:10.1038/s41467-023-39432-2 · Cited by 114

Tongue microbiota and oral health status in community-dwelling elderly adults.

Asakawa, M., Takeshita, T., Furuta, M., Kageyama, S., Takeuchi, K., Hata, J., Ninomiya, T., & Yamashita, Y. (2018) · mSphere · doi:10.1128/msphere.00332-18 · Cited by 113

Lambda interferon restructures the nasal microbiome and increases susceptibility to staphylococcus aureus superinfection

Planet, P. J., Parker, D., Cohen, T. S., Smith, H., Leon, J. D., Ryan, C., Hammer, T. J., Fierer, N., Chen, E. I., & Prince, A. S. (2016) · mBio · doi:10.1128/mbio.01939-15 · Cited by 113

Assessing fungal contributions to cellulose degradation in soil by using high-throughput stable isotope probing

Koechli, C., Campbell, A. N., Pepe-Ranney, C., & Buckley, D. H. (2019) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2018.12.013 · Cited by 108

Featured article: Structure moderation of gut microbiota in liraglutide-treated diabetic male rats

Zhang, Q., Xiao, X., Zheng, J., Li, M., Yu, M., Ping, F., Wang, T., & Wang, X. (2018) · Experimental Biology and Medicine · doi:10.1177/1535370217743765 · Cited by 101

Gut microbial diversity and genus-level differences identified in cervical cancer patients versus healthy controls

Sims, T. T., Colbert, L. E., Zheng, J., Delgado Medrano, A. Y., Hoffman, K. L., Ramondetta, L., Jazaeri, A., Jhingran, A., Schmeler, K. M., Daniel, C. R., et al. (2019) · Gynecologic Oncology · doi:10.1016/j.ygyno.2019.09.002 · Cited by 100

Climatic warming and the future of bison as grazers.

Craine, J. M., Towne, E. G., Miller, M., & Fierer, N. (2015) · Scientific Reports · doi:10.1038/srep16738 · Cited by 98

Alteration of the fecal microbiota in North-Eastern Han Chinese population with sporadic Parkinson’s disease

Li, F., Wang, P., Chen, Z., Sui, X., Xie, X., & Zhang, J. (2019) · Neuroscience Letters · doi:10.1016/j.neulet.2019.134297 · Cited by 97

Mind and gut: Associations between mood and gastrointestinal distress in children exposed to adversity

Callaghan, B. L., Fields, A., Gee, D. G., Gabard-Durnam, L., Caldera, C., Humphreys, K. L., Goff, B., Flannery, J., Telzer, E. H., Shapiro, M., et al. (2020) · Development and Psychopathology · doi:10.1017/s0954579419000087 · Cited by 93

Changes in bacterial community of soil induced by long-term straw returning

Chen, Y., Xin, L., Liu, J., Yuan, M., Liu, S., Jiang, W., & Chen, J. (2017) · Scientia Agricola · doi:10.1590/1678-992x-2016-0025 · Cited by 92

Characterization of the ruminal fermentation and microbiome in lambs supplemented with hydrolysable and condensed tannins

Salami, S. A., Valenti, B., Bella, M., O ' Grady, M. N., Luciano, G., Kerry, J. P., Jones, E., Priolo, A., & Newbold, C. J. (2018) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiy061 · Cited by 91

Host immunity modulates the efficacy of microbiota transplantation for treatment of Clostridioides difficile infection

Littmann, E. R., Lee, J.-J., Denny, J. E., Alam, Z., Maslanka, J. R., Zarin, I., Matsuda, R., Carter, R. A., Susac, B., Saffern, M. S., et al. (2021) · Nature Communications · doi:10.1038/s41467-020-20793-x · Cited by 88

Shaping of Intestinal Microbiota in Nlrp6- and Rag2-Deficient Mice Depends on Community Structure

Gálvez, E. J. C., Iljazovic, A., Gronow, A., Flavell, R., & Strowig, T. (2017) · Cell Reports · doi:10.1016/j.celrep.2017.12.027 · Cited by 81

Maternal obese-type gut microbiota differentially impact cognition, anxiety and compulsive behavior in male and female offspring in mice

Bruce-Keller, A. J., Fernandez-Kim, S.-O., Townsend, R. L., Kruger, C., Carmouche, R., Newman, S., Salbaum, J. M., & Berthoud, H.-R. (2017) · PLoS ONE · doi:10.1371/journal.pone.0175577 · Cited by 76

Relationships of variations in the tongue microbiota and pneumonia mortality in nursing home residents.

Kageyama, S., Takeshita, T., Furuta, M., Tomioka, M., Asakawa, M., Suma, S., Takeuchi, K., Shibata, Y., Iwasa, Y., & Yamashita, Y. (2018) · The Journals of Gerontology Series A · doi:10.1093/gerona/glx205 · Cited by 73

Differentiated mechanisms of biochar mitigating straw-induced greenhouse gas emissions in two contrasting paddy soils

Wang, Y.-Q., Bai, R., Di, H. J., Mo, L.-Y., Han, B., Zhang, L.-M., & He, J.-Z. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02566 · Cited by 74

Neuroprotective effects of an engineered commensal bacterium in the 1‐methyl‐4‐phenyl‐1, 2, 3, 6‐tetrahydropyridine Parkinson disease mouse model via producing glucagon‐like peptide‐1

Fang, X., Tian, P., Zhao, X., Jiang, C., & Chen, T. (2019) · Journal of Neurochemistry · doi:10.1111/jnc.14694 · Cited by 72

Analysis of gut microbiome and metabolite characteristics in patients with slow transit constipation

Tian, H., Chen, Q., Yang, B., Qin, H., & Li, N. (2021) · Digestive Diseases and Sciences · doi:10.1007/s10620-020-06500-2 · Cited by 68

Fertilization shapes a well-organized community of bacterial decomposers for accelerated paddy straw degradation

Zhan, Y., Liu, W., Bao, Y., Zhang, J., Petropoulos, E., Li, Z., Lin, X., & Feng, Y. (2018) · Scientific Reports · doi:10.1038/s41598-018-26375-8 · Cited by 68

Nitrate and the origin of saliva influence composition and short chain fatty acid production of oral microcosms

Koopman, J. E., Buijs, M. J., Brandt, B. W., Keijser, B. J. F., Crielaard, W., & Zaura, E. (2016) · Microbial Ecology · doi:10.1007/s00248-016-0775-z · Cited by 66

Early nasopharyngeal microbial signature associated with severe influenza in children: a retrospective pilot study

Langevin, S., Pichon, M., Smith, E., Morrison, J., Bent, Z., Green, R., Barker, K., Solberg, O., Gillet, Y., Javouhey, E., et al. (2017) · Journal of General Virology · doi:10.1099/jgv.0.000920 · Cited by 64

Investigating the long-term effect of subchronic phencyclidine-treatment on novel object recognition and the association between the gut microbiota and behavior in the animal model of schizophrenia

Pyndt Jørgensen, B., Krych, L., Pedersen, T. B., Plath, N., Redrobe, J. P., Hansen, A. K., Nielsen, D. S., Pedersen, C. S., Larsen, C., & Sørensen, D. B. (2015) · Physiology & Behavior · doi:10.1016/j.physbeh.2014.12.042 · Cited by 62

Fecal microbiota signatures of adult patients with different types of short bowel syndrome

Huang, Y., Guo, F., Li, Y., Wang, J., & Li, J. (2017) · Journal of Gastroenterology and Hepatology · doi:10.1111/jgh.13806 · Cited by 64

Loss of microbial diversity does not decrease γ-HCH degradation but increases methanogenesis in flooded paddy soil

Yang, X., Yuan, J., Li, N., Franks, A. E., Shentu, J., Luo, Y., Xu, J., & He, Y. (2021) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2021.108210 · Cited by 64

Fecal Microbiota transplantation modulates the gut Flora favoring patients with functional constipation

Zhang, X., Li, N., Chen, Q., & Qin, H. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.700718 · Cited by 62

Multi-Omics Analyses Reveal Relationships among Dairy Consumption, Gut Microbiota and Cardiometabolic Health

Shuai, M., Zuo, L.-S.-Y., Miao, Z., Gou, W., Xu, F., Jiang, Z., Ling, C.-W., Fu, Y., Xiong, F., Chen, Y.-M., et al. (2021) · eBioMedicine · doi:10.1016/j.ebiom.2021.103284 · Cited by 61

Phylogenetic and functional diversity of total (DNA) and expressed (RNA) bacterial communities in urban green infrastructure bioswale soils

Gill, A. S., Lee, A., & McGuire, K. L. (2017) · Applied and Environmental Microbiology · doi:10.1128/aem.00287-17 · Cited by 62

The microbiomes and metagenomes of forest biochars

Noyce, G. L., Winsborough, C., Fulthorpe, R., & Basiliko, N. (2016) · Scientific Reports · doi:10.1038/srep26425 · Cited by 60

Natural and artificial feeding management before weaning promote different rumen microbial colonization but not differences in gene expression levels at the rumen epithelium of newborn goats

Abecia, L., Jiménez, E., Martínez-Fernandez, G., Martín-García, A. I., Ramos-Morales, E., Pinloche, E., Denman, S. E., Newbold, C. J., & Yáñez-Ruiz, D. R. (2017) · PLoS ONE · doi:10.1371/journal.pone.0182235 · Cited by 59

New insights into cheddar cheese microbiota-metabolome relationships revealed by integrative analysis of multi-omics data

Afshari, R., Pillidge, C. J., Read, E., Rochfort, S., Dias, D. A., Osborn, A. M., & Gill, H. (2020) · Scientific Reports · doi:10.1038/s41598-020-59617-9 · Cited by 58

Cellulase Interacts with Lactic Acid Bacteria to Affect Fermentation Quality, Microbial Community, and Ruminal Degradability in Mixed Silage of Soybean Residue and Corn Stover

Zhao, C., Wang, L., Ma, G., Jiang, X., Yang, J., Lv, J., & Zhang, Y. (2021) · Animals · doi:10.3390/ani11020334 · Cited by 56

In vitro and in vivo evaluation of an exopolysaccharide produced by Lactobacillus helveticus KLDS1.8701 for the alleviative effect on oxidative stress

Li, B., Du, P., Smith, E. E., Wang, S., Jiao, Y., Guo, L., Huo, G., & Liu, F. (2019) · Food & Function · doi:10.1039/c8fo01920g · Cited by 56

A More Robust Gut Microbiota in Calorie-Restricted Mice Is Associated with Attenuated Intestinal Injury Caused by the Chemotherapy Drug Cyclophosphamide

Liu, T., Wu, Y., Wang, L., Pang, X., Zhao, L., Yuan, H., & Zhang, C. (2019) · mBio · doi:10.1128/mbio.02903-18 · Cited by 56

Oral, Nasal, and Gut Microbiota in Parkinson’s Disease

Li, Z., Lu, G., Luo, E., Wu, B., Li, Z., Guo, J., Xia, Z., Zheng, C., Su, Q., Zeng, Y., et al. (2022) · Neuroscience · doi:10.1016/j.neuroscience.2021.10.011 · Cited by 52

Seasonal patterns of bison diet across climate gradients in North America.

Craine, J. M. (2021) · Scientific Reports · doi:10.1038/s41598-021-86260-9 · Cited by 50

Dietary Habits of 2- to 9-Year-Old American Children Are Associated with Gut Microbiome Composition

Herman, D. R., Rhoades, N., Mercado, J., Argueta, P., Lopez, U., & Flores, G. E. (2020) · Journal of the Academy of Nutrition and Dietetics · doi:10.1016/j.jand.2019.07.024 · Cited by 50

Dietary ursolic acid improves health span and life span in male Drosophila melanogaster

Staats, S., Wagner, A. E., Lüersen, K., Künstner, A., Meyer, T., Kahns, A. K., Derer, S., Graspeuntner, S., Rupp, J., Busch, H., et al. (2019) · BioFactors · doi:10.1002/biof.1467 · Cited by 48

Differential effects of coconut versus soy oil on gut microbiota composition and predicted metabolic function in adult mice

Patrone, V., Minuti, A., Lizier, M., Miragoli, F., Lucchini, F., Trevisi, E., Rossi, F., & Callegari, M. L. (2018) · BMC Genomics · doi:10.1186/s12864-018-5202-z · Cited by 47

Neutrophil Extracellular Traps Promote the Development and Growth of Human Salivary Stones

Schapher, M., Koch, M., Weidner, D., Scholz, M., Wirtz, S., Mahajan, A., Herrmann, I., Singh, J., Knopf, J., Leppkes, M., et al. (2020) · Cells · doi:10.3390/cells9092139 · Cited by 47

An altered fecal microbial profiling in rosacea patients compared to matched controls

Chen, Y.-J., Lee, W.-H., Ho, H. J., Tseng, C.-H., & Wu, C.-Y. (2021) · Journal of the Formosan Medical Association · doi:10.1016/j.jfma.2020.04.034 · Cited by 46

Vancomycin Pretreatment on MPTP-Induced Parkinson’s Disease Mice Exerts Neuroprotection by Suppressing Inflammation Both in Brain and Gut

Cui, C., Hong, H., Shi, Y., Zhou, Y., Qiao, C.-M., Zhao, W.-J., Zhao, L.-P., Wu, J., Quan, W., Niu, G.-Y., et al. (2023) · Journal of Neuroimmune Pharmacology · doi:10.1007/s11481-021-10047-y · Cited by 45

Dietary supplementation with leucine or in combination with arginine decreases body fat weight and alters gut microbiota composition in finishing pigs

Hu, C., Li, F., Duan, Y., Yin, Y., & Kong, X. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.01767 · Cited by 41

The modulatory effects of gut microbes and metabolites on blood-brain barrier integrity and brain function in sepsis-associated encephalopathy

Li, Z., Zhang, F., Sun, M., Liu, J., Zhao, L., Liu, S., Li, S., & Wang, B. (2023) · PeerJ · doi:10.7717/peerj.15122 · Cited by 43

Characterisation of lactic acid bacteria in spontaneously fermented camel milk and selection of strains for fermentation of camel milk.

Fugl, A., Berhe, T., Kiran, A., Hussain, S., Laursen, M. F., Bahl, M. I., Hailu, Y., Sørensen, K. I., Guya, M. E., Ipsen, R., et al. (2017) · International Dairy Journal · doi:10.1016/j.idairyj.2017.04.007 · Cited by 44

Gut microbiota dysbiosis associated with bile acid metabolism in neonatal cholestasis disease

Li, M., Liu, S., Wang, M., Hu, H., Yin, J., Liu, C., & Huang, Y. (2020) · Scientific Reports · doi:10.1038/s41598-020-64728-4 · Cited by 41

Parkinson’s Disease Medication Alters Small Intestinal Motility and Microbiota Composition in Healthy Rats

van Kessel, S. P., Bullock, A., van Dijk, G., & El Aidy, S. (2022) · mSystems · doi:10.1128/msystems.01191-21 · Cited by 41

Metagenomic Sequencing Reveals that High-Grain Feeding Alters the Composition and Metabolism of Cecal Microbiota and Induces Cecal Mucosal Injury in Sheep

Xie, F., Xu, L., Wang, Y., & Mao, S. (2021) · mSystems · doi:10.1128/msystems.00915-21 · Cited by 38

Pi-Dan-Jian-Qing decoction ameliorates type 2 diabetes mellitus through regulating the gut microbiota and serum metabolism

Xie, X., Liao, J., Ai, Y., Gao, J., Zhao, J., Qu, F., Xu, C., Zhang, Z., Wen, W., Cui, H., et al. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.748872 · Cited by 37

An Exploratory Study for the Association of Gut Microbiome with Efficacy of Immune Checkpoint Inhibitor in Patients with Hepatocellular Carcinoma

Shen, Y.-C., Lee, P.-C., Kuo, Y.-L., Wu, W.-K., Chen, C.-C., Lei, C.-H., Yeh, C.-P., Hsu, C., Hsu, C.-H., Lin, Z.-Z., et al. (2021) · Journal of Hepatocellular Carcinoma · doi:10.2147/jhc.s315696 · Cited by 36

Deciphering the d-/l-lactate-producing microbiota and manipulating their accumulation during solid-state fermentation of cereal vinegar

Chai, L.-J., Shen, M.-N., Sun, J., Deng, Y.-J., Lu, Z.-M., Zhang, X.-J., Shi, J.-S., & Xu, Z.-H. (2020) · Food Microbiology · doi:10.1016/j.fm.2020.103559 · Cited by 36

Plant Identity Exerts Stronger Effect than Fertilization on Soil Arbuscular Mycorrhizal Fungi in a Sown Pasture

Zheng, Y., Chen, L., Luo, C.-Y., Zhang, Z.-H., Wang, S.-P., & Guo, L.-D. (2016) · Microbial Ecology · doi:10.1007/s00248-016-0817-6 · Cited by 36

Bacteroides dorei BDX-01 alleviates DSS-induced experimental colitis in mice by regulating intestinal bile salt hydrolase activity and the FXR-NLRP3 signaling pathway

Sun, X., Chen, Z., Yu, L., Zeng, W., Sun, B., Fan, H., & Bai, Y. (2023) · Frontiers in Pharmacology · doi:10.3389/fphar.2023.1205323 · Cited by 33

Lactulose regulates gut microbiota dysbiosis and promotes short-chain fatty acids production in acute pancreatitis patients with intestinal dysfunction

Wang, J., Jiang, M., Hu, Y., Lei, Y., Zhu, Y., Xiong, H., & He, C. (2023) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2023.114769 · Cited by 33

Visualizing the dental biofilm matrix by means of fluorescence lectin-binding analysis

Tawakoli, P. N., Neu, T. R., Busck, M. M., Kuhlicke, U., Schramm, A., Attin, T., Wiedemeier, D. B., & Schlafer, S. (2017) · Journal of Oral Microbiology · doi:10.1080/20002297.2017.1345581 · Cited by 33

A sustainable approach by using microalgae to minimize the eutrophication process of Mar Menor lagoon

Gil-Izquierdo, A., Pedreño, M. A., Montoro-García, S., Tárraga-Martínez, M., Iglesias, P., Ferreres, F., Barceló, D., Núñez-Delicado, E., & Gabaldón, J. A. (2021) · Science of The Total Environment · doi:10.1016/j.scitotenv.2020.143613 · Cited by 29

Assessing the colonic microbiome, hydrogenogenic and hydrogenotrophic genes, transit and breath methane in constipation

Wolf, P. G., Parthasarathy, G., Chen, J., O'Connor, H. M., Chia, N., Bharucha, A. E., & Gaskins, H. R. (2017) · Neurogastroenterology & Motility · doi:10.1111/nmo.13056 · Cited by 26

Litter chemistry of common European tree species drives the feeding preference and consumption rate of soil invertebrates, and shapes the diversity and structure of gut and faecal microbiomes

Heděnec, P., Zheng, H., Siqueira, D. P., Peng, Y., Schmidt, I. K., Frøslev, T. G., Kjøller, R., Li, H., Frouz, J., & Vesterdal, L. (2023) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2022.108918 · Cited by 29

Effects of combined aerobic and resistance training on gut microbiota and cardiovascular risk factors in physically active elderly women: A randomized controlled trial

Zhong, F., Xu, Y., Lai, H.-Y., Yang, M., Cheng, L., Liu, X., Sun, X., Yang, Y., Wang, J., Lv, W., et al. (2022) · Frontiers in Physiology · doi:10.3389/fphys.2022.1004863 · Cited by 26

Biochar-induced migration of tetracycline and the alteration of microbial community in agricultural soils

Liu, H.-Y., Song, C., Zhao, S., & Wang, S.-G. (2020) · Science of The Total Environment · doi:10.1016/j.scitotenv.2019.136086 · Cited by 27

Oral Microbiomes in Children with Asthma and Dental Caries

Cherkasov, S. V., Popova, L. Y., Vivtanenko, T. V., Demina, R. R., Khlopko, Y. A., Balkin, A. S., & Plotnikov, A. O. (2019) · Oral Diseases · doi:10.1111/odi.13020 · Cited by 26

A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome

Casaro, M. B., Thomas, A. M., Mendes, E., Fukumori, C., Ribeiro, W. R., Oliveira, F. A., Crisma, A. R., Murata, G. M., Bizzarro, B., Sá-Nunes, A., et al. (2021) · Microbiome · doi:10.1186/s40168-021-01081-2 · Cited by 24

Bacterial diversity and community structure during fermentation of Chinese sauerkraut with Lactobacillus casei 11MZ-5-1 by Illumina Miseq sequencing

Du, R., Ge, J., Zhao, D., Sun, J., Ping, W., & Song, G. (2018) · Letters in Applied Microbiology · doi:10.1111/lam.12824 · Cited by 23

In-depth insights into the disruption of the microbiota-gut-blood barrier of model organism (Bombyx mori) by fluoride

Li, G., Zheng, X., Zhu, Y., Long, Y., & Xia, X. (2022) · Science of The Total Environment · doi:10.1016/j.scitotenv.2022.156220 · Cited by 23

Synergistic Effect of Rhamnolipids and Inoculation on the Bioremediation of Petroleum-Contaminated Soils by Bacterial Consortia

Xue, S.-W., Huang, C., Tian, Y.-X., Li, Y.-B., Li, J., & Ma, Y.-L. (2020) · Current Microbiology · doi:10.1007/s00284-020-01899-3 · Cited by 21

Bacterial PncA improves diet-induced NAFLD in mice by enabling the transition from nicotinamide to nicotinic acid

Feng, S., Guo, L., Wang, H., Yang, S., & Liu, H. (2023) · Communications Biology · doi:10.1038/s42003-023-04613-8 · Cited by 20

Spectroradiometric detection of competitor diatoms and the grazer Poteriochromonas in algal cultures

Reichardt, T. A., Maes, D., Jensen, T. J., Dempster, T. A., McGowen, J. A., Poorey, K., Curtis, D. J., Lane, T. W., & Timlin, J. A. (2020) · Algal Research · doi:10.1016/j.algal.2020.102020 · Cited by 18

Stimulating Acidimicrobium sp. Strain A6 in iron-rich, acidic sediments from AFFF-impacted sites for PFAS defluorination

Huang, S., Smorada, C., Schaefer, C. E., & Jaffé, P. R. (2024) · Science of The Total Environment · doi:10.1016/j.scitotenv.2024.176801 · Cited by 17

Conversion of marginal land into switchgrass conditionally accrues soil carbon but reduces methane consumption

Bates, C. T., Escalas, A., Kuang, J., Hale, L., Wang, Y., Herman, D., Nuccio, E. E., Wan, X., Bhattacharyya, A., Fu, Y., et al. (2022) · The ISME Journal · doi:10.1038/s41396-021-00916-y · Cited by 17

Effects of a 10-strain oral probiotic on parameters of vaginal health and microbial community: A pilot clinical study

Martoni, C. J., Frederiksen, A. K. S., Damholt, A., & Leyer, G. (2022) · International Journal of Women's Health · doi:10.2147/ijwh.s341046 · Cited by 12

Regional biogeography versus intra-annual dynamics of the root and soil microbiome

Bell-Dereske, L. P., Benucci, G. M. N., da Costa, P. B., Bonito, G., Friesen, M. L., Tiemann, L. K., & Evans, S. E. (2023) · Environmental Microbiome · doi:10.1186/s40793-023-00504-x · Cited by 14

Marked Response of Rat Ileal and Colonic Microbiota After the Establishment of Alzheimer’s Disease Model With Bilateral Intraventricular Injection of Aβ (1-42)

Xu, Q., Wen, L., Wei, G., Zhao, X., Liu, Y., Xiong, W., Zhang, T., Fan, Y., Chen, C., Xiang, C., et al. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.819523 · Cited by 11

The protozoan commensal Tritrichomonas musculis is a natural adjuvant for mucosal IgA

Cao, E. Y., Burrows, K., Chiaranunt, P., Popovic, A., Zhou, X., Xie, C., Thakur, A., Britton, G., Spindler, M., Ngai, L., et al. (2024) · Journal of Experimental Medicine · doi:10.1084/jem.20221727 · Cited by 8