Identification of seven loci affecting mean telomere length and their association with disease
Open accessAbstract
Interindividual variation in mean leukocyte telomere length (LTL) is associated with cancer and several age-associated diseases. We report here a genome-wide meta-analysis of 37,684 individuals with replication of selected variants in an additional 10,739 individuals. We identified seven loci, including five new loci, associated with mean LTL (P < 5 × 10−8). Five of the loci contain candidate genes (TERC, TERT, NAF1, OBFC1 and RTEL1) that are known to be involved in telomere biology. Lead SNPs at two loci (TERC and TERT) associate with several cancers and other diseases, including idiopathic pulmonary fibrosis. Moreover, a genetic risk score analysis combining lead variants at all 7 loci in 22,233 coronary artery disease cases and 64,762 controls showed an association of the alleles associated with shorter LTL with increased risk of coronary artery disease (21% (95% confidence interval, 5–35%) per standard deviation in LTL, P = 0.014). Our findings support a causal role of telomere-length variation in some age-related diseases.
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Written from the paper’s full text.
TL;DR
A genome-wide meta-analysis in 37,684 individuals plus replication in 10,739 identified seven loci, including five novel loci, associated with mean leukocyte telomere length. A genetic risk score combining all seven loci showed that alleles associated with shorter telomere length were associated with increased coronary artery disease risk.
Key findings
- Seven loci reached genome-wide significance (\(P<5\times10^{-8}\)) for mean leukocyte telomere length, including five novel loci; five contain genes known in telomere biology: *TERC*, *TERT*, *NAF1*, *OBFC1*, and *RTEL1*.
- Lead SNPs at *TERC* and *TERT* associate with several cancers and other diseases, including idiopathic pulmonary fibrosis; alleles associated with both shorter and longer telomeres showed associations with specific cancers.
- In 22,233 coronary artery disease cases and 64,762 controls, a genetic risk score using all seven loci showed that alleles associated with shorter telomere length were associated with increased CAD risk: 21% (95% CI 5–35%) per standard deviation in telomere length, \(p=0.014\).
- Per-allele effects were equivalent to 1.9–3.9 years of age-related attrition in T/S ratio, estimated as roughly 57–117 bp based on prior Southern blot attrition of about 30 bp per year.
Methods
- Discovery genome-wide meta-analysis of 37,684 individuals from 15 cohorts, with replication of selected variants in 10,739 individuals from 6 additional cohorts; all subjects were of European descent.
- Mean leukocyte telomere length was measured by quantitative PCR as a T/S ratio, standardized within cohort by Z-transformation, and analyzed by linear regression adjusted for age, sex, and study-specific covariates; meta-analysis used inverse-variance weighting across 2,362,330 SNPs with genomic control correction.
- Follow-up analyses included replication of two borderline loci, sex-stratified and conditional association analyses, bioinformatics annotation, telomerase activity assays in 208 individuals, and a genetic risk score analysis in CARDIoGRAM.
Limitations
- The paper states that the qPCR method cannot directly calculate effects on telomere length in base pairs, so bp estimates rely on prior Southern blot attrition estimates; the telomerase activity analysis had only 80% power to detect a SNP effect explaining 3.7% of variance, so smaller effects may have been missed.
- The paper notes that the lead SNP at *RTEL1* lies 94 kb from the gene, that bioinformatics cannot exclude other genes in each region, and that CAD genetic risk score interpretation requires caution because variants may have other biological effects, including the *NAF1* locus trending in the opposite direction.
- Evident from the text: all participants were of European descent, limiting generalizability; replication was limited to selected variants and two borderline loci; and individual CAD SNP associations were not significant, with the CAD finding driven by the combined score.
Model-written summary. Check it against the paper before relying on it.
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Claims the paper makes
0 of 53 cited sources checked · 0 supported · 0 flagged
- Findingown data
In a genetic risk score analysis combining lead variants at all seven LTL-associated loci in 22,233 CAD cases and 64,762 controls, alleles associated with shorter LTL were associated with increased risk of CAD (21% (95% CI: 5-35%) per standard deviation in LTL, p=0.014).
“Moreover, a genetic risk score analysis combining lead variants at all seven loci in 22,233 coronary artery disease cases and 64,762 controls showed an association of the alleles associated with shorter LTL with increased risk of CAD (21% (95% CI: 5–35%) per standard deviation in LTL, p=0.014).”
- Also stated in: § Abstract · plain
“the combined GRS analysis showed a significant association (p = 0.014) of the allele associated with shorter LTL with increased risk of CAD (Fig 3). Shorter mean LTL equivalent to one SD in LTL was associated with a 21% (95% CI 5% –35%) higher risk of CAD.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [30] Schunkert, H. et al. Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. Nat. Genet. 43, 333–338 (2011). source
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- cites [31] International Consortium for Blood Pressure Genome-Wide Association Studies. Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk. Nature 478, 103–109 (2011). source
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- Rests on an assumption: The LTL-associated genetic variants used in the genetic risk score analysis are not associated with CAD through pathways independent of LTL (no horizontal pleiotropy).
- Rests on an assumption: The genetic variants used in the risk score analysis are randomly assigned at conception and therefore not confounded by environmental factors.
- Also stated in: § Abstract · plain
- Findingcitation
Five of the seven identified LTL-associated loci contain genes (TERC, TERT, NAF1, OBFC1, RTEL1) known to be involved in telomere biology.
“Five of the loci contain genes (TERC, TERT, NAF1, OBFC1, RTEL1) that are known to be involved in telomere biology.”
- Also stated in: § Abstract · plain
“In addition to this, four further loci – 5p15.33 (TERT), 4q32.2 (NAF1, nuclear assembly factor 1), 10q24.33 (OBFC1, oligonucleotide/oligosaccharide-binding fold containing 1)18 and 20q13.3 (RTEL1, regulator of telomere elongation helicase 1) - harbour genes that encode proteins with known function in telomere biology3, 20–23.”
Quote in the paperNot a substantial claim0 of 5 sources checked- cites [3] Wang, C. & Meier, U.T. Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins. EMBO J. 23, 1857–1867 (2004). source
Not checked in the free run.
- cites [20] Egan, E.D. & Collins, K. An enhanced H/ACA RNP assembly mechanism for human telomerase RNA. Mol. Cell. Biol. 32, 2428–2439 (2012). source
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- cites [21] Miyake, Y. et al. RPA-like mammalian Ctc1-Stn1-Ten1 complex binds to single-stranded DNA and protects telomeres independently of the Pot1 pathway. Mol. Cell 36, 193–206 (2009). source
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- cites [22] Ding, H. et al. Regulation of murine telomere length by Rtel1: an essential gene encoding a helicase-like protein. Cell 117, 873–886 (2004). source
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- cites [23] Barber, L.J. et al. RTEL1 maintains genomic stability by suppressing homologous recombination. Cell 135, 261–271 (2008). source
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- Also stated in: § Abstract · plain
- Findingcitation
Lead SNPs at the TERC and TERT loci associate with several cancers and other diseases, including idiopathic pulmonary fibrosis.
“Lead SNPs at two loci (TERC and TERT) associate with several cancers and other diseases, including idiopathic pulmonary fibrosis.”
- Also stated in: § Abstract · plain
“The rs10936599 (TERC) allele associated with longer LTL associates with increased risk of colorectal cancer19 and with two autoimmune diseases, multiple sclerosis (longer LTL allele) and celiac disease (shorter LTL allele). The lead SNP for the 5p15.33 (TERT) locus is associated with different cancer types (both shorter and longer LTL alleles) and with increased risk of idiopathic pulmonary fibros”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [19] Jones, A.M. et al. Terc polymorphisms are associated both with susceptibility to colorectal cancer and with longer telomeres. Gut 61, 248–254 (2012). source
Not checked in the free run.
- cites [26] Alder, J.K. et al. Short telomeres are a risk factor for idiopathic pulmonary fibrosis. Proc. Natl. Acad. Sci. USA 105, 13051–13056 (2008). source
Not checked in the free run.
- Also stated in: § Abstract · plain
- Findingown data
The previously reported OBFC1 locus was replicated.
“We also replicated the previously reported OBFC1 locus18.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [18] Levy, D. et al. Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology. Proc. Natl. Acad. Sci. USA 107, 9293–9298 (2010). source
Not checked in the free run.
- Findingown data
Shorter mean LTL equivalent to one SD in LTL was associated with a 21% (95% CI 5% -35%) higher risk of CAD.
“Shorter mean LTL equivalent to one SD in LTL was associated with a 21% (95% CI 5% –35%) higher risk of CAD.”
Quote in the paperSubstantial claim
- Findingown data
Similar SNPs were also present for other genes in some of the loci.
“However, similar SNPs were also present for other genes in some of the loci.”
Quote in the paperNot a substantial claim - Findingown data
The combined P value from the GWA meta-analyses and replication cohorts for rs11125529 was 7.50x10−10.
“The combined P value from the GWA meta-analyses and replication cohorts for rs11125529 was 7.50x10−10.”
Quote in the paperSubstantial claim - Findingown data
No significant association was found between any of the LTL-associated variants and leukocyte telomerase activity in 208 individuals.
“We did not find significant association of any of the variants with telomerase activity (Supplementary Table 6).”
Quote in the paperNot a substantial claim - Findingown data
Per-allele effects of the lead SNPs are equivalent to between 1.9-3.9 years of age-related attrition in T/S ratio.
“We saw per-allele effects using this measure equivalent to between 1.9–3.9 years of age-related attrition in T/S ratio (Table 1).”
Quote in the paperNot a substantial claim - Findingown data
SNPs in high LD with the lead SNP were found to lie within potential regulatory elements of TERC, NAF1 and OBFC1.
“SNPs in high LD with the lead SNP were found to lie within potential regulatory elements of TERC, NAF1 and OBFC1.”
Quote in the paperNot a substantial claim - Findingown data
The most significantly associated locus was the previously reported TERC locus on 3q26.
“The most significantly associated locus we found was the previously reported TERC locus on 3q26 (Figs 1 and 2, Table 1)17.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [17] Codd, V. et al. Common variants near TERC are associated with mean telomere length. Nat. Genet. 42, 197–199 (2010). source
Not checked in the free run.
- Findingown data
Each of the identified loci explains a relatively small proportion of the total variance in LTL.
“Each of the identified loci explains a relatively small proportion of the total variance in LTL (Table 1).”
Quote in the paperNot a substantial claim - Premisecitation
Inter-individual variation in mean leukocyte telomere length (LTL) is associated with cancer and several age-associated diseases.
“Inter-individual variation in mean leukocyte telomere length (LTL) is associated with cancer and several age-associated diseases.”
- Also stated in: § Abstract · plain
“Both longer and shorter TL are associated with increased risk of certain cancers4, 5”
- Also stated in: § Abstract · plain
“shorter age-and sex-adjusted mean LTL has been found to be associated with risk of several age-related diseases, including CAD12–15”
Quote in the paperSubstantial claim0 of 6 sources checked- cites [4] Ma, H. et al. Shortened telomere length is associated with increased risk of cancer: a meta-analysis. PLoS ONE 6, e20466 (2011). source
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- cites [5] Wentzensen, I.M., Mirabello, L., Pfeiffer, R.M. & Savage, S.A. The association of telomere length and cancer; a meta-analysis. Cancer Epidemiol. Biomarkers Prev. 20, 1238–1250 (2011). source
Not checked in the free run.
- cites [12] Brouilette, S., Singh, R.K., Thompson, J.R., Goodall, A.H. & Samani, N.J. White cell telomere length and risk of premature myocardial infarction. Arterioscler. Thromb. Vasc. Biol. 23, 842–846 (2003). source
Not checked in the free run.
- cites [13] Brouilette, S. et al. Telomere length, risk of coronary heart disease, and statin treatment in the West of Scotland Primary Prevention Study: a nested case-control study. Heart 94, 422–425 (2008). source
Not checked in the free run.
- cites [14] Fitzpatrick, A.L. et al. Leukocyte telomere length and cardiovascular disease in the cardiovascular health study. Am. J. Epidemiol. 165, 14–21 (2007). source
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- cites [15] Benetos, A. et al. Short telomeres are associated with increased carotid atherosclerosis in hypertensive subjects. Hypertension 43, 182–185 (2004). source
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- Also stated in: § Abstract · plain
- Premisecitation
Within an individual, mean TL of leukocytes and other tissues is highly correlated.
“However, there is evidence that within an individual, mean TL of leukocytes (LTL) and other tissues is highly correlated10, 11.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [10] Wilson, W.R. et al. Blood leukocyte telomere DNA content predicts vascular telomere DNA content in humans with and without vascular disease. Eur. Heart J. 29, 2689–2694 (2008). source
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- cites [11] Okuda, K. et al. Telomere length in the newborn. Pediatr. Res. 52, 377–381 (2002). source
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- Premisecitation
Shorter age-and sex-adjusted mean LTL has been found to be associated with risk of several age-related diseases, including CAD.
“Furthermore, shorter age-and sex-adjusted mean LTL has been found to be associated with risk of several age-related diseases, including CAD12–15 and has been advanced as a marker of biological ageing16.”
Quote in the paperSubstantial claim0 of 4 sources checked- cites [12] Brouilette, S., Singh, R.K., Thompson, J.R., Goodall, A.H. & Samani, N.J. White cell telomere length and risk of premature myocardial infarction. Arterioscler. Thromb. Vasc. Biol. 23, 842–846 (2003). source
Not checked in the free run.
- cites [13] Brouilette, S. et al. Telomere length, risk of coronary heart disease, and statin treatment in the West of Scotland Primary Prevention Study: a nested case-control study. Heart 94, 422–425 (2008). source
Not checked in the free run.
- cites [14] Fitzpatrick, A.L. et al. Leukocyte telomere length and cardiovascular disease in the cardiovascular health study. Am. J. Epidemiol. 165, 14–21 (2007). source
Not checked in the free run.
- cites [15] Benetos, A. et al. Short telomeres are associated with increased carotid atherosclerosis in hypertensive subjects. Hypertension 43, 182–185 (2004). source
Not checked in the free run.
- Interpretationown data
The findings support a causal role of telomere length variation in some age-related diseases.
“Our findings support a causal role of telomere length variation in some age-related diseases.”
- Also stated in: § Abstract · hedged
“Our finding here therefore supports a causal association of shorter LTL with CAD and further mechanistic investigation of this relationship is warranted.”
Quote in the paperSubstantial claim- Rests on an assumption: The LTL-associated genetic variants used in the genetic risk score analysis are not associated with CAD through pathways independent of LTL (no horizontal pleiotropy).
- Rests on an assumption: The genetic variants used in the risk score analysis are randomly assigned at conception and therefore not confounded by environmental factors.
- Also stated in: § Abstract · hedged
- Study design and conductnone given
The qPCR method used to measure LTL cannot be used to directly calculate the effect on LTL in base pairs.
“The qPCR method used here to measure LTL cannot be used to directly calculate the effect on LTL in base pairs (bp).”
Quote in the paperNot a substantial claim - Interpretationreasoning
The three most significantly-associated loci (3q26, 5p15.33 and 4q32.2) harbour genes involved in the formation and activity of telomerase.
“Therefore, the three most significantly-associated loci (3q26, 5p15.33 and 4q32.2) harbour genes involved in the formation and activity of telomerase.”
Quote in the paperSubstantial claim - Premisecitation
Common variants at two loci on Chr3q26 (TERC) and Chr10q24.33 (OBFC1), that explain <1% of the variance in TL, have shown a replicated association with mean LTL in genome-wide association studies.
“So far, common variants at two loci on Chr3q26 (TERC)17–19 and Chr10q24.33 (OBFC1)18, that explain <1% of the variance in TL, have shown a replicated association with mean LTL in genome-wide association (GWA) studies.”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [17] Codd, V. et al. Common variants near TERC are associated with mean telomere length. Nat. Genet. 42, 197–199 (2010). source
Not checked in the free run.
- cites [18] Levy, D. et al. Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology. Proc. Natl. Acad. Sci. USA 107, 9293–9298 (2010). source
Not checked in the free run.
- cites [19] Jones, A.M. et al. Terc polymorphisms are associated both with susceptibility to colorectal cancer and with longer telomeres. Gut 61, 248–254 (2012). source
Not checked in the free run.
- Premisecitation
One of the most widely reported associations for LTL to date has been that between shorter mean LTL and CAD.
“One of the most widely reported associations for LTL to date has been that between shorter mean LTL and CAD12–14, 25.”
Quote in the paperSubstantial claim0 of 4 sources checked- cites [12] Brouilette, S., Singh, R.K., Thompson, J.R., Goodall, A.H. & Samani, N.J. White cell telomere length and risk of premature myocardial infarction. Arterioscler. Thromb. Vasc. Biol. 23, 842–846 (2003). source
Not checked in the free run.
- cites [13] Brouilette, S. et al. Telomere length, risk of coronary heart disease, and statin treatment in the West of Scotland Primary Prevention Study: a nested case-control study. Heart 94, 422–425 (2008). source
Not checked in the free run.
- cites [14] Fitzpatrick, A.L. et al. Leukocyte telomere length and cardiovascular disease in the cardiovascular health study. Am. J. Epidemiol. 165, 14–21 (2007). source
Not checked in the free run.
- cites [25] Farzaneh-Far, R. et al. Telomere length trajectory and its determinants in persons with coronary artery disease: longitudinal findings from the heart and soul study. PLoS ONE 5, e8612 (2010). source
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- Premisecitation
Many prior studies using Southern blotting have shown that mean LTL attrition rate is about ~30 bp per year.
“However, many prior studies that have used Southern blotting to measure LTL have shown that mean LTL attrition rate is about ~30 bp per year8, 12–14, 25.”
Quote in the paperSubstantial claim0 of 5 sources checked- cites [8] Njajou, O.T. et al. Telomere length is paternally inherited and is associated with parental lifespan. Proc. Natl. Acad. Sci. USA 104, 12135–12139 (2007). source
Not checked in the free run.
- cites [12] Brouilette, S., Singh, R.K., Thompson, J.R., Goodall, A.H. & Samani, N.J. White cell telomere length and risk of premature myocardial infarction. Arterioscler. Thromb. Vasc. Biol. 23, 842–846 (2003). source
Not checked in the free run.
- cites [13] Brouilette, S. et al. Telomere length, risk of coronary heart disease, and statin treatment in the West of Scotland Primary Prevention Study: a nested case-control study. Heart 94, 422–425 (2008). source
Not checked in the free run.
- cites [14] Fitzpatrick, A.L. et al. Leukocyte telomere length and cardiovascular disease in the cardiovascular health study. Am. J. Epidemiol. 165, 14–21 (2007). source
Not checked in the free run.
- cites [25] Farzaneh-Far, R. et al. Telomere length trajectory and its determinants in persons with coronary artery disease: longitudinal findings from the heart and soul study. PLoS ONE 5, e8612 (2010). source
Not checked in the free run.
- Interpretationreasoning
The per-allele effect of the different SNPs on LTL in base pairs ranges from ~57 to 117 bp.
“This suggests that the per allele effect of the different SNPs on LTL in base pairs ranges from ~ 57 to 117 bp (Table 1).”
Quote in the paperNot a substantial claim - Premisecitation
The finding is consistent with the prospective WOSCOPS study where, after adjustment for other CAD risk factors, baseline LTL was associated with a 44% higher risk of CAD over the ensuing mean 5.5 years of follow-up in individuals in the tertile with the shortest LTL compared with the longest LTL.
“Nonetheless, the finding is consistent with that in the prospective WOSCOPS study where, after adjustment for other CAD risk factors, baseline LTL was associated with a 44% higher risk of CAD over the ensuing mean 5.5 years of follow-up in individuals in the tertile with the shortest LTL compared with the longest LTL13.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [13] Brouilette, S. et al. Telomere length, risk of coronary heart disease, and statin treatment in the West of Scotland Primary Prevention Study: a nested case-control study. Heart 94, 422–425 (2008). source
Not checked in the free run.
- Interpretationown data
Our finding supports a causal association of shorter LTL with CAD.
“Our finding here therefore supports a causal association of shorter LTL with CAD and further mechanistic investigation of this relationship is warranted.”
Quote in the paperSubstantial claim- Rests on an assumption: The LTL-associated genetic variants used in the genetic risk score analysis are not associated with CAD through pathways independent of LTL (no horizontal pleiotropy).
- Rests on an assumption: The genetic variants used in the risk score analysis are randomly assigned at conception and therefore not confounded by environmental factors.
- Interpretationown data
Our findings suggest that variants in several genes encoding proteins with known function in telomere biology as well as other genes influence LTL.
“Our findings suggest that variants in several genes encoding proteins with known function in telomere biology as well as other genes influence LTL.”
Quote in the paperSubstantial claim
- May combine two claims. 14
- Classified as probably not a substantial claim. 7
May combine two claims.
Findingown dataWe identified seven loci, including five novel loci, associated with mean LTL at genome-wide significance (P<5x10−8) in a GWAS meta-analysis of 37,684 individuals with replication in 10,739 individuals.
“Here, in a genome-wide meta-analysis of 37,684 individuals with replication of selected variants in a further 10,739 individuals, we identified seven loci, including five novel loci, associated with mean LTL (P<5x10−8).”
- Also stated in: § Abstract · plain
“SNPs in 7 loci showed association with mean LTL at genome-wide significance (P<5x10−8, Fig 1, Table 1, Fig 2 and Supplementary Fig 2).”
Quote in the paperSubstantial claim- Also stated in: § Abstract · plain
May combine two claims.
Findingown dataHere, we report five novel and confirm two previously reported loci that associate with mean LTL in humans.
“Here, we report five novel and confirm two previously reported loci that associate with mean LTL in humans.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe association of rs11125529 at 2p16.2 was confirmed in replication, while rs2967374 at 16q23.3 was not.
“We confirmed the association of rs11125529 but not of rs2967374 (Table 1).”
Quote in the paperSubstantial claimMay combine two claims.
FindingcitationThe rs10936599 (TERC) allele associated with longer LTL associates with increased risk of colorectal cancer and with multiple sclerosis (longer LTL allele) and celiac disease (shorter LTL allele).
“The rs10936599 (TERC) allele associated with longer LTL associates with increased risk of colorectal cancer19 and with two autoimmune diseases, multiple sclerosis (longer LTL allele) and celiac disease (shorter LTL allele).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [19] Jones, A.M. et al. Terc polymorphisms are associated both with susceptibility to colorectal cancer and with longer telomeres. Gut 61, 248–254 (2012). source
Not checked in the free run.
May combine two claims.
Findingown dataAlthough individual lead SNPs were not significantly associated with CAD, 6 out of 7 variants showed consistency in direction and the combined GRS analysis showed a significant association (p = 0.014) of the allele associated with shorter LTL with increased risk of CAD.
“Although the results for individuals variants were not significant, 6 out of 7 variants showed consistency in direction and the combined GRS analysis showed a significant association (p = 0.014) of the allele associated with shorter LTL with increased risk of CAD (Fig 3).”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenThe remaining two loci (19p21 and 2p16.2) do not harbour obvious candidate genes related to telomere biology.
“The remaining two loci (19p21 and 2p16.2) do not harbour obvious candidate genes related to telomere biology.”
Quote in the paperNot a substantial claimMay combine two claims.
FindingcitationThe lead SNP for the 5p15.33 (TERT) locus is associated with different cancer types (both shorter and longer LTL alleles) and with increased risk of idiopathic pulmonary fibrosis (shorter LTL allele).
“The lead SNP for the 5p15.33 (TERT) locus is associated with different cancer types (both shorter and longer LTL alleles) and with increased risk of idiopathic pulmonary fibrosis (shorter LTL allele), a disease that has previously been shown to be associated with shorter LTL26.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [26] Alder, J.K. et al. Short telomeres are a risk factor for idiopathic pulmonary fibrosis. Proc. Natl. Acad. Sci. USA 105, 13051–13056 (2008). source
Not checked in the free run.
May combine two claims.
Findingown dataThere was no evidence of sex-dependent effects or additional independent signals at any of the identified loci.
“There was no evidence of sex-dependent effects or additional independent signals at any of these loci (Online Methods, Supplementary Tables 3 and 4).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenThe lead SNP at the RTEL1 locus lies 94 kb from RTEL1.
“However, it should be noted that the lead SNP lies 94 kb from RTEL1.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationIn cross-sectional population studies, mean LTL is longer in women than in men and is inversely associated with age, declining by between 20-40 base pairs per year.
“In cross-sectional population studies mean LTL is longer in women than in men and is inversely associated with age (declining by between 20–40 base-pairs (bp) per year)9, 12–14.”
Quote in the paperNot a substantial claim0 of 4 sources checked- cites [9] Vasa Nicotera, M. et al. Mapping of a major locus that determines telomere length in humans. Am. J. Hum. Genet. 76, 147–151 (2005). source
Not checked in the free run.
- cites [12] Brouilette, S., Singh, R.K., Thompson, J.R., Goodall, A.H. & Samani, N.J. White cell telomere length and risk of premature myocardial infarction. Arterioscler. Thromb. Vasc. Biol. 23, 842–846 (2003). source
Not checked in the free run.
- cites [13] Brouilette, S. et al. Telomere length, risk of coronary heart disease, and statin treatment in the West of Scotland Primary Prevention Study: a nested case-control study. Heart 94, 422–425 (2008). source
Not checked in the free run.
- cites [14] Fitzpatrick, A.L. et al. Leukocyte telomere length and cardiovascular disease in the cardiovascular health study. Am. J. Epidemiol. 165, 14–21 (2007). source
Not checked in the free run.
May combine two claims.
PremisecitationMean TL shows considerable inter-individual variability and has high heritability with estimates varying between 44-80%.
“Mean TL shows considerable inter-individual variability and has high heritability with estimates varying between 44–80%7–9.”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [7] Slagboom, P.E., Droog, S. & Boomsma, D.I. Genetic determination of telomere size in humans: a twin study of three age groups. Am. J. Hum. Genet. 55, 876–882 (1994).
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- cites [8] Njajou, O.T. et al. Telomere length is paternally inherited and is associated with parental lifespan. Proc. Natl. Acad. Sci. USA 104, 12135–12139 (2007). source
Not checked in the free run.
- cites [9] Vasa Nicotera, M. et al. Mapping of a major locus that determines telomere length in humans. Am. J. Hum. Genet. 76, 147–151 (2005). source
Not checked in the free run.
Classified as probably not a substantial claim.
PremisecitationBecause LTL is also affected by other risk factors for CAD such as oxidative stress, it has been unclear whether the association of shorter LTL with CAD is primary or secondary.
“Because LTL is also affected by other risk factors for CAD such as oxidative stress27–29, it has been unclear whether the association of shorter LTL with CAD is primary or secondary.”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [27] Richter, T. & von Zglinicki, T. Continuous correlation between oxidative stress and telomere length shortening in fibroblasts. Exp. Gerontol. 41, 1039–1042 (2007). source
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- cites [28] Valdes, A.M. et al. Obesity, cigarette smoking, and telomere length in women. Lancet 366, 662–664 (2005). source
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- cites [29] Bekaert, S. et al. Telomere length and cardiovascular risk factors in a middle-aged population free of overt cardiovascular disease. Aging Cell 6, 639–647 (2007). source
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May combine two claims.
Study design and conductown dataThe telomerase activity study had only 80% power (α of 0.05) to detect a SNP effect that explained 3.7% of the variance in telomerase activity, so smaller effects are likely to have been missed.
“However, the study only had 80% power (α of 0.05) to detect a SNP effect that explained 3.7% of the variance in telomerase activity and therefore smaller effects are likely to have been missed in this exploratory analysis.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationThe most persuasive evidence for a causal role comes from in vitro and in vivo manipulation of telomerase activity which impacts on TL and has been shown to enhance or reverse senescence and ageing-associated phenotypes.
“The most persuasive evidence for a causal role comes from in vitro and in vivo manipulation of telomerase activity which impacts on TL and has been shown to enhance or reverse senescence and ageing-associated phenotypes35–39.”
Quote in the paperSubstantial claim0 of 5 sources checked- cites [35] Minamino, T. et al. Endothelial cell senescence inhuman atherosclerosis: role of telomere in endothelial dysfunction. Circulation 105, 1541–1544 (2002). source
Not checked in the free run.
- cites [36] Oh, H. et al. Telomerase reverse transcriptase promotes cardiac muscle cell proliferation, hypertrophy, and survival. Proc. Natl. Acad. Sci. USA 98, 10308–10313 (2001). source
Not checked in the free run.
- cites [37] Wong, K.K. et al. Telomere dysfunction and Atm deficiency compromises organ homeostasis and accelerates ageing. Nature 421, 643–648 (2003). source
Not checked in the free run.
- cites [38] Samper, E., Flores, J.M. & Blasco, M.A. Restoration of telomerase activity rescues chromosomal instability and premature aging in Terc−/− mice with short telomeres. EMBO Rep. 2, 800–807 (2001). source
Not checked in the free run.
- cites [39] Jaskelioff, M. et al. Telomerase reactivation reverses tissue degeneration in aged telomerase deficient mice. Nature 469, 102–106 (2011). source
Not checked in the free run.
May combine two claims.
Interpretationown dataAlthough strong candidate genes are located in some of the loci, at this stage we cannot overlook the potential involvement of other genes within each region.
“These findings emphasise that although strong candidate genes are located in some of the loci, at this stage we cannot overlook the potential involvement of other genes within each region.”
Quote in the paperSubstantial claimClassified as probably not a substantial claim.
Premisenone givenThe extent to which the association of shorter LTL with age-related disorders is causal in nature remains unclear.
“However, the extent to which the association of shorter LTL with age-related disorders is causal in nature remains unclear.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing).
InterpretationreasoningBecause the variants at each of the loci could have other biological effects that could impact on their association with CAD through LTL, some caution is required in the interpretation of this association.
“Because the variants at each of the loci could have other biological effects that could impact on their association with CAD through LTL (and possibly explain why the NAF1 locus may be trending in the opposite direction), some caution is required in the interpretation of this association.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S2 (checkable).
InterpretationreasoningThe findings provide a framework for a genetic approach to investigating the causal role of telomere length in ageing-related diseases.
“The findings provide a framework for a genetic approach to investigating the causal role of telomere length in ageing-related diseases.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningSome of the genetic variants associated with LTL are also associated with risk of specific cancers as well as other diseases, suggesting a causal link.
“Here, we show that some of the genetic variants associated with LTL are also associated with risk of specific cancers as well as other diseases some of which have been shown to be previously associated with shorter LTL, suggesting a causal link.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataAlleles associated with both shorter and longer telomeres showed associations with specific cancers, suggesting that variation in LTL in either direction may contribute to the development of specific cancers.
“An interesting finding was that alleles associated with both shorter and longer telomeres showed associations with specific cancers suggesting that variation in LTL in either direction may contribute to the development of specific cancers.”
Quote in the paperSubstantial claim
The paper relies on this without support.
The LTL-associated genetic variants used in the genetic risk score analysis are not associated with CAD through pathways independent of LTL (no horizontal pleiotropy).
“Because the variants at each of the loci could have other biological effects that could impact on their association with CAD through LTL (and possibly explain why the NAF1 locus may be trending in the opposite direction), some caution is required in the interpretation of this association.”
The paper relies on this without support.
The genetic variants used in the risk score analysis are randomly assigned at conception and therefore not confounded by environmental factors.
“To investigate whether the association could be causal, we examined the association of both individual lead SNPs and a genetic risk score (GRS) based on a combination of all seven SNPs, (adjusted for their effect size) with CAD in the CARDIoGRAM GWAS meta-analysis comprising 22,233 CAD cases and 64,762 controls of European descent30, using the approach recently described by the ICBP Consortium31.”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The finding that cardiovascular disease risk is influenced by common variations in genes known molecularly to act in telomere maintenance and protection supports a causal role for impaired telomere maintenance in partially contributing to cardiovascular disease.
“Because this large meta-analysis showed that the risk of cardiovascular disease is influenced by common variations in a defined set of genes known molecularly to act specifically in telomere maintenance and protection (Codd et al., 2013), this finding supports a causal role for impaired telomere maintenance in partially contributing to cardiovascular disease.”
From Psychiatric disorders and leukocyte telomere length: Underlying mechanisms linking mental illness with cellular aging (2015) · cites this paper as Codd et al., 2013
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
The chromosome 19 locus is assigned two different bands
MinorThe remaining chromosome 19 locus is called 19p21 in one sentence and 19p12 in the next.
“The remaining two loci (19p21 and 2p16.2) do not harbour obvious candidate genes related to telomere biology.”
“The locus on 19p12 contains a cluster of genes encoding zinc finger proteins (ZNFs)”
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“Telomere length appears to be one of the causal factors, as recent mendelian genetic studies of telomere length have shown direct prediction of earlier onset of certain diseases of aging (Codd et al., 2013; Zhan et al., 2015).”
BackgroundMachiela, M. J., Hsiung, C. A., Shu, X., Seow, W. J., Wang, Z., Matsuo, K., Hong, Y., Seow, A., Wu, C., Hosgood, H. D., et al. (2015) · International Journal of Cancer · doi:10.1002/ijc.29393 · Cited by 90 · see citing works
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Self-citationNo association between mean telomere length and life stress observed in a 30 year birth cohort
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Cardiovascular disease and the biology of aging
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Telomeres as Therapeutic Targets in Heart Disease
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Shortened telomeres in families with a propensity to autism
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Self-citation
- Authors
- CARDIoGRAM consortium, Codd, V., Nelson, C. P., Albrecht, E., Mangino, M., Deelen, J., Buxton, J. L., Hottenga, J. J., Fischer, K., Esko, T., Surakka, I., Broer, L., Nyholt, D. R., Leach, I. M., Salo, P., Hägg, S., Matthews, M. K., Palmen, J., Norata, G. D., O'Reilly, P. F., Saleheen, D., Amin, N., Balmforth, A. J., Beekman, M., de Boer, R. A., Böhringer, S., Braund, P. S., Burton, P. R., Craen, A. J. M., Denniff, M., Dong, Y., Douroudis, K., Dubinina, E., Eriksson, J. G., Garlaschelli, K., Guo, D., Hartikainen, A.-L., Henders, A. K., Houwing-Duistermaat, J. J., Kananen, L., Karssen, L. C., Kettunen, J., Klopp, N., Lagou, V., van Leeuwen, E. M., Madden, P. A., Mägi, R., Magnusson, P. K. E., Männistö, S., McCarthy, M. I., Medland, S. E., Mihailov, E., Montgomery, G. W., Oostra, B. A., Palotie, A., Peters, A., Pollard, H., Pouta, A., Prokopenko, I., Ripatti, S., Salomaa, V., Suchiman, H. E. D., Valdes, A. M., Verweij, N., Viñuela, A., Wang, X., Wichmann, H.-E., Widen, E., Willemsen, G., Wright, M. J., Xia, K., Xiao, X., van Veldhuisen, D. J., Catapano, A. L., Tobin, M. D., Hall, A. S., Blakemore, A. I. F., van Gilst, W. H., Zhu, H., Erdmann, J., Reilly, M. P., Kathiresan, S., Schunkert, H., Talmud, P. J., Pedersen, N. L., Perola, M., Ouwehand, W., Kaprio, J., Martin, N. G., van Duijn, C. M., Hovatta, I., Gieger, C., Metspalu, A., Boomsma, D. I., Jarvelin, M.-R., Slagboom, P. E., Thompson, J. R., Spector, T. D., van der Harst, P., & Samani, N. J.
- Affiliations
- University of Leicester (GB)
- Helmholtz Munich (DE)
- King's College London (GB)
- Leiden University Medical Center (NL)
- Imperial College London (GB)
- Vrije Universiteit Amsterdam (NL)
- University of Tartu (EE)
- University of Helsinki (FI)
- QIMR Berghofer Medical Research Institute (AU)
- University Medical Center Groningen (NL)
- Finnish Institute for Health and Welfare (FI)
- Karolinska Institutet (SE)
- University College London (GB)
- Queen Mary University of London (GB)
- University of Cambridge (GB)
- Erasmus MC (NL)
- University of Leeds (GB)
- Ospedale Bassini (IT)
- University of Oulu (FI)
- University of Oxford (GB)
- Washington University in St. Louis (US)
- Centre for Human Genetics (GB)
- University of North Carolina at Chapel Hill (US)
- The University of Texas MD Anderson Cancer Center (US)
- University of Milan (IT)
- University of Lübeck (DE)
- University of Pennsylvania (US)
- Broad Institute (US)
- Corresponding author
- Samani, Nilesh J
- ORCID
- Codd, Veryan
- Nelson, Christopher P
- Mangino, Massimo
- Deelen, Joris
- Hottenga, Jouke Jan
- Fischer, Krista
- Esko, Tõnu
- Surakka, Ida
- Broer, Linda
- Nyholt, Dale R
- Leach, Irene Mateo
- Salo, Perttu
- Hägg, Sara
- Norata, Giuseppe D
- Saleheen, Danish
- Amin, Najaf
- Beekman, Marian
- Böhringer, Stefan
- Braund, Peter S
- Burton, Paul R
- Craen, Anton J Mde
- Dong, Yanbin
- Douroudis, Konstantinos
- Dubinina, Elena
- Eriksson, Johan G
- Henders, Anjali K
- Kananen, Laura
- Karssen, Lennart C
- Kettunen, Johannes
- Lagou, Vasiliki
- Madden, Pamela A
- Mägi, Reedik
- Magnusson, Patrik K E
- Männistö, Satu
- McCarthy, Mark I
- Medland, Sarah E
- Montgomery, Grant W
- Palotie, Aarno
- Peters, Annette
- Prokopenko, Inga
- Ripatti, Samuli
- Salomaa, Veikko
- Suchiman, H Eka D
- Valdes, Ana M
- Verweij, Niek
- Viñuela, Ana
- Wang, Xiaoling
- Wichmann, H-Erich
- Willemsen, Gonneke
- Wright, Margaret J
- Xia, Kai
- Xiao, Xiangjun
- Catapano, Alberico L
- Tobin, Martin D
- Hall, Alistair S
- Blakemore, Alexandra I F
- Zhu, Haidong
- Erdmann, Jeanette
- Reilly, Muredach P
- Kathiresan, Sekar
- Schunkert, Heribert
- Talmud, Philippa J
- Pedersen, Nancy L
- Perola, Markus
- Ouwehand, Willem
- Kaprio, Jaakko
- Martin, Nicholas G
- Hovatta, Iiris
- Gieger, Christian
- Metspalu, Andres
- Boomsma, Dorret I
- Slagboom, P Eline
- Spector, Tim D
- Samani, Nilesh J
- Venue
- Nature Genetics
- Published
- 2013-03-27
- Volume
- 45
- Issue
- 4
- Pages
- 422-427
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- PMC
- PMC4006270
- OpenAlex
- W2024809912
- Semantic Scholar
- d64aa55d6cc0d39691bca9100e007f06e658e682
- Cited by
- 933
- References
- 53
- Citations by year
- 2026: 18 · 2025: 49 · 2024: 62 · 2023: 56 · 2022: 64 · 2021: 77 · 2020: 82 · 2019: 92 · 2018: 100 · 2017: 82 · 2016: 90 · 2015: 74 · 2014: 56 · 2013: 28 · 2012: 1
- FWCI
- 56.95
- Type
- journal article
- Language
- en
- Open access
- Licence
- other-oa
- www.springer.com/tdm (tdm)
- Locations
- Nature Genetics (publishedVersion)
- PubMed (publishedVersion)
- Discovery Research Portal (University of Dundee) (publishedVersion, other-oa)
- Explore Bristol Research (publishedVersion)
- VU Research Portal (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- EUR Research Repository (Erasmus University Rotterdam) (submittedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Leiden Repository (Leiden University) (submittedVersion)
- eSpace (Curtin University) (submittedVersion)
- Research Portal (King's College London) (submittedVersion)
- mediaTUM (Technical University of Munich) (submittedVersion)
- University of Groningen research database (University of Groningen / Centre for Information Technology) (submittedVersion)
- Funders
- Wellcome Trust (090532)
- National Institute for Health and Care Research (NF-SI-0611-10170)
- Medical Research Council (MR/K014536/1)
- National Institute on Drug Abuse (R56DA012854)
- Topics
- Health Sciences › Medicine › Physiology › Telomeres, Telomerase, and Senescence
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Aging › Genetics, Aging, and Longevity in Model Organisms
- Keywords
- leukocyte telomere length, TERC, telomerase reverse transcriptase, NAF1, RTEL1, coronary artery disease, cancer risk, idiopathic pulmonary fibrosis, age-related diseases, polygenic risk score, telomere biology
- MeSH terms
- Disease, Female, Humans, Leukocytes, Male, Risk Factors, Biomarkers, Tumor, Meta-Analysis as Topic, Case-Control Studies, Telomere, Telomerase, Genetic Predisposition to Disease, Genome-Wide Association Study, Genetic Loci
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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