PKR, the double stranded RNA‐dependent protein kinase as a critical target in Alzheimer's disease
Open accessAbstract
Introduction Control of translation Dysfunctions of protein synthesis mediated by PKR‐ and mTOR‐dependent signalling pathways Crosslink between the up‐regulation of PKR/eIF2α and the down‐regulation of mTOR/RS6K in AD PKR: a potential biomarker of AD diagnosis Conclusion and perspectives Amyloid β‐peptide (Aβ) deposits and neurofibrillary tangles are key hallmarks in Alzheimer's disease (AD). Aβ stimulates many signal transducers involved in the neuronal death. However, many mechanisms remain to be elucidated because no definitive therapy of AD exists. Some studies have focused on the control of translation which involves eIF2 and eIF4E, main eukaryotic factors of initiation. The availability of these factors depends on the activation of the double‐stranded RNA‐dependent protein kinase (PKR) and the mammalian target of rapamycin (mTOR), respectively. mTOR positively regulates the translation while PKR results in a protein synthesis shutdown. Many studies demonstrated that the PKR signalling pathway is up‐regulated in cellular and animal models of AD and in the brain of AD patients. Interestingly, our results showed that phosphorylated PKR and eIF2α levels were significantly increased in lymphocytes of AD patients. These modifications were significantly correlated with cognitive and memory test scores performed in AD patients. On the contrary, the mTOR signalling pathway is down‐regulated in cellular and animal models of AD. Recently, we showed that p53, regulated protein in development and DNA damage response 1 and tuberous sclerosis complex 2 could represent molecular links between PKR and mTOR signalling pathways. PKR could be an early biomarker of the neuronal death and a critical target for a therapeutic programme in AD.
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Written from the paper’s full text.
TL;DR
This review argues that the double-stranded RNA-dependent protein kinase (PKR)/eIF2α pathway is up-regulated in Alzheimer's disease (AD) brains, cellular and animal models, and patient lymphocytes, while the mTOR/p70S6K pathway is down-regulated. The authors propose PKR as an early biomarker of neuronal death and a critical therapeutic target, with p53, Redd1 and TSC2 as molecular links between the two pathways.
Key findings
- Phosphorylated PKR and eIF2α levels were significantly increased in lymphocytes of AD patients and negatively correlated with cognitive and memory test scores (higher PKR, lower score).
- In an initial lymphocyte cohort, the PT389-p70S6K/total p70S6K ratio was reduced in AD patients (n=26) versus controls (n=28) and positively correlated with MMSE scores; however, in a larger cohort no significant differences were found for PT1462-TSC2 (control 2.39 ± 0.59, n=36; AD 2.48 ± 0.51, n=50), PS2448-mTOR (control 0.9 ± 0.1, n=38; AD 1.34 ± 0.2, n=49) or PT389-p70S6K (control 4.83 ± 1.01, n=32; AD 3.87 ± 0.53, n=50).
- In AD lymphocytes, p53 and Redd1 gene expression, p53 activation and Redd1 protein levels were significantly higher than in age-matched controls, but were not correlated with MMSE scores; PKR siRNA transfection in Aβ42-treated SH-SY5Y cells decreased the p66 isoform of p53 and Redd1 transcription and increased phosphorylated TSC2.
- In APPSL/PS1 KI mice, Pt451-PKR and PS51-eIF2α were increased, with PKR up-regulated as early as 3 months of age before massive neuronal loss at 6 months; the number of mononuclear cells was 43% higher in AD patients than controls.
Methods
- Narrative review of the literature on translational control (eIF2/eIF4E, PKR, mTOR) in AD, integrating the authors' own published and unpublished data.
- Evidence drawn from AD patient lymphocytes and blood cells, post-mortem AD brain tissue, neuroblastoma (SH-SY5Y) cell cultures exposed to Aβ, and APP/PS1 transgenic mouse models (APPsl, APPsl/PS1, APPSL/PS1 KI).
- Main analyses cited include Western blot quantification of phosphorylated proteins, statistical correlations with MMSE and memory scores, and PKR gene silencing (siRNA) experiments.
Limitations
- Stated by the paper: PKR is not specific to AD, being active in Parkinson's disease, Huntington's disease and amyotrophic lateral sclerosis, and in infectious, inflammatory and ischemic pathology without cognitive decline; the authors therefore suggest PKR may be an early biomarker of cell death rather than of cognitive decline.
- Stated by the paper: PKR is a constitutive protein and all its physiological roles are unknown, so the appropriate inhibitor concentration or neuron-directed strategy remains to be determined.
- Evident from the text: the Braak score was not indicated in the cited patient studies localizing Pt451-PKR; the authors note a paradox whereby PKR up-regulation in mononuclear cells does not lead to the cell death seen in neurons, and they offer only hypotheses for this discrepancy; several key supporting results are described as unpublished or submitted data.
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Claims the paper makes
39 of 130 cited sources checked · 20 supported · 0 flagged · accuracy not yet measured
- Premisecitation
In cells deficient for PKR or containing a dominant-negative form, there is substantial resistance to apoptosis.
“Conversely, in cells deficient for the kinase or containing a dominant-negative form, there is substantial resistance to apoptosis [30, 61, 63].”
Quote in the paperNot a substantial claim2 of 3 sources checked- cites [30] Chang RC Suen KC Ma CH Involvement of double-stranded RNA-dependent protein kinase and phosphorylation of eukaryotic initiation factor-2alpha in neuronal degeneration J Neurochem 2002 83 1215 25 12437593 source
The section on vulnerability to Aβ peptide toxicity reports significantly fewer apoptotic cells among neurons expressing dominant-negative PKR. The PKR-knockout results (p. 1221) likewise show a much smaller increase in apoptosis after Aβ exposure, but the Discussion says those neurons did not entirely escape toxicity. The evidence concerns Aβ-induced neuronal apoptosis, not resistance to apoptosis generally. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [61] Balachandran S Barber GN PKR in innate immunity, cancer, and viral oncolysis Methods Mol Biol 2007 383 277 301 18217692 source
- cites [63] Srivastava SP Kumar KU Kaufman RJ Phosphorylation of eukaryotic translation initiation factor 2 mediates apoptosis in response to activation of the double-stranded RNA-dependent protein kinase J Biol Chem 1998 273 2416 23 9442091 source
- Premisecitation
Phosphorylation of PKR and eIF2α is associated with degenerating neurons in AD brains.
“previous reports revealed that phosphorylation of PKR and eIF2α was associated with degenerating neurons in AD brains [50, 95, 96].”
Quote in the paperSubstantial claim1 of 3 sources checked- cites [50] Chang RC Wong AK Ng HK Phosphorylation of eukaryotic initiation factor-2alpha (eIF2alpha) is associated with neuronal degeneration in Alzheimer's disease Neuroreport 2002 13 2429 32 12499843 source
- cites [95] Onuki R Bando Y Suyama E An RNA-dependent protein kinase is involved in tunicamycin-induced apoptosis and Alzheimer's disease EMBO J 2004 23 959 68 14765129 PMC380987 source
The section “Levels of nuclear PKR in AD brain tissue” reports elevated phosphorylated PKR in AD brain tissue and suggests an association with AD pathology in neurons. The paper mentions eIF2α phosphorylation as a pathway involving PKR, but does not report phosphorylated eIF2α in AD brains. Its Discussion also notes that neurons with aggregated PKR had not apparently undergone apoptosis, so the evidence does not directly establish an association with degenerating neurons. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [96] Peel AL PKR activation in neurodegenerative disease J Neuropathol Exp Neurol 2004 63 97 105 14989595 source
- Premisecitation
PKR can induce dephosphorylation of 4E-BPs by increasing the activity of phosphatase 2A after its interaction with the regulatory subunit B56α, leading to cell apoptosis.
“PKR can induce dephosphorylation of the proteins 4E-BPs by increasing the activity of the phosphatase 2A after its interaction with the regulatory subunit B56α, leading to cell apoptosis [82–84].”
Quote in the paperSubstantial claim2 of 3 sources checked- cites [82] Ruvolo VR Kurinna SM Karanjeet KB PKR regulates B56(alpha)-mediated BCL2 phosphatase activity in acute lymphoblastic leukemia-derived REH cells J Biol Chem 2008 283 35474 85 18957415 PMC2602900 source
The Abstract and the section on PKR suppression in REH cells link PKR, B56α-regulated mitochondrial PP2A activity, and apoptosis. They identify BCL2—not 4E-BPs—as the protein dephosphorylated in this pathway. A search for 4E-BPs and 4E-BP1 found no passage supporting that part of the claim. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [83] Jeffrey IW Bushell M Tilleray VJ Inhibition of protein synthesis in apoptosis: differential requirements by the tumor necrosis factor alpha family and a DNA-damaging agent for caspases and the double-stranded RNA-dependent protein kinase Cancer Res 2002 62 2272 80 11956083
- cites [84] Xu Z Williams BR The B56alpha regulatory subunit of protein phosphatase 2A is a target for regulation by double-stranded RNA-dependent protein kinase PKR Mol Cell Biol 2000 20 5285 99 10866685 PMC85978 source
The Results and Discussion (page unavailable) support a proposed mechanism in which PKR phosphorylates B56α, increases PP2A activity, and decreases phosphorylation of eIF4E—not 4E-BPs. The Discussion mentions apoptosis only as a possible effect of altered PP2A activity; it does not establish that this pathway leads to apoptosis. (LLM, conf=0.90)
Experimental — accuracy not yet measured
- Premisecitation
Aβ neurotoxicity is associated with an increased PKR and eIF2α phosphorylation linked to increased intracellular calcium and caspase-8 activation following Aβ exposure in vitro.
“Another report demonstrated in vitro that Aβ neurotoxicity was associated with an increased PKR and eIF2α phosphorylation linked to increased intracellular calcium and caspase-8 activation following Aβ exposure [28, 30].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [28] Suen KC Yu MS So KF Upstream signaling pathways leading to the activation of double-stranded RNA-dependent serine/threonine protein kinase in beta-amyloid peptide neurotoxicity J Biol Chem 2003 278 49819 27 12975376 source
- cites [30] Chang RC Suen KC Ma CH Involvement of double-stranded RNA-dependent protein kinase and phosphorylation of eukaryotic initiation factor-2alpha in neuronal degeneration J Neurochem 2002 83 1215 25 12437593 source
The Discussion reports increased PKR and eIF2α phosphorylation during Aβ-induced neuronal apoptosis and links pathway activation to increased intracellular calcium. The time-course section reports caspase-3 activity after Aβ exposure, not caspase-8 activation; that part of the claim is unsupported by this source. (LLM, conf=0.90)
Experimental — accuracy not yet measured
- Premisecitation
p53 activation is able to inhibit the activity of mTOR through a pathway involving the subsequent activation of TSC1 and TSC2.
“Furthermore, reports showed that p53 activation is able to inhibit the activity of mTOR through a pathway involving the subsequent activation of TSC gene products TSC1 and TSC2, which are tumour suppressors and negative regulators of mTOR [78, 103–105].”
Quote in the paperSubstantial claim1 of 4 sources checked- cites [78] Krymskaya VP Tumour suppressors hamartin and tuberin: intracellular signalling Cell Signal 2003 15 729 39 12781866 source
- cites [103] Feng Z Hu W de Stanchina E The regulation of AMPK beta1, TSC2, and PTEN expression by p53: stress, cell and tissue specificity, and the role of these gene products in modulating the IGF-1-AKT-mTOR pathways Cancer Res 2007 67 3043 53 17409411 source
- cites [104] Levine AJ Feng Z Mak TW Coordination and communication between the p53 and IGF-1-AKT-TOR signal transduction pathways Genes Dev 2006 20 267 75 16452501 source
- cites [105] Feng Z Zhang H Levine AJ The coordinate regulation of the p53 and mTOR pathways in cells Proc Natl Acad Sci USA 2005 102 8204 9 15928081 PMC1142118 source
- Premisecitation
Antisense Redd1 gene protected the cells from Aβ neurotoxicity.
“Authors showed that the antisense Redd1 gene protected the cells from Aβ neurotoxicity [128].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [128] Kim JR Lee SR Chung HJ Identification of amyloid beta-peptide responsive genes by cDNA microarray technology: involvement of RTP801 in amyloid beta-peptide toxicity Exp Mol Med 2003 35 403 11 14646594 source
- Premisecitation
The control of translation through the PKR/eIF2a signalling pathway is altered in AD lymphocytes as it was observed in brains of AD patients.
“The control of translation through PKR/eIF2a signalling pathway is altered in AD lymphocytes as it was observed in brains of AD patients [50, 95].”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [50] Chang RC Wong AK Ng HK Phosphorylation of eukaryotic initiation factor-2alpha (eIF2alpha) is associated with neuronal degeneration in Alzheimer's disease Neuroreport 2002 13 2429 32 12499843 source
- cites [95] Onuki R Bando Y Suyama E An RNA-dependent protein kinase is involved in tunicamycin-induced apoptosis and Alzheimer's disease EMBO J 2004 23 959 68 14765129 PMC380987 source
The ‘Levels of nuclear PKR in AD brain tissue’ section (p. 963) reports significantly higher phosphorylated PKR in AD brains than in controls. The Introduction explains that PKR can act through eIF2α to block protein synthesis, but the paper does not show altered eIF2α signalling or translation in AD brains; it also does not study AD lymphocytes. (LLM, conf=0.87)
Experimental — accuracy not yet measured
- Findingcitation
The up-regulation of PKR in mononuclear cells does not lead to the cell death observed in cellular models exposed to Aβ, in AD transgenic mice and in brains of AD patients.
“Paradoxically, the up-regulation of PKR in mononuclear cells do not lead to the cell death observed in cellular models exposed to Ap, in AD transgenic mice and in brains of AD patients [50, 95, 97].”
Quote in the paperSubstantial claim1 of 3 sources checked- cites [50] Chang RC Wong AK Ng HK Phosphorylation of eukaryotic initiation factor-2alpha (eIF2alpha) is associated with neuronal degeneration in Alzheimer's disease Neuroreport 2002 13 2429 32 12499843 source
- cites [95] Onuki R Bando Y Suyama E An RNA-dependent protein kinase is involved in tunicamycin-induced apoptosis and Alzheimer's disease EMBO J 2004 23 959 68 14765129 PMC380987 source
The Introduction and ‘Levels of nuclear PKR in AD brain tissue’ report elevated PKR in AD brains and suggest a relationship with neuronal cell death. But the Discussion says that many AD-brain cells with PKR aggregates had not apparently undergone apoptosis. This paper does not examine mononuclear cells or AD transgenic mice, and its PKR-related cell-death experiments used tunicamycin rather than Aβ. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [97] Page G Rioux Bilan A Ingrand S Activated double-stranded RNA-dependent protein kinase and neuronal death in models of Alzheimer's disease Neuroscience 2006 139 1343 54 16581193 source
- Rests on an assumption: The molecular and cellular alterations measured in peripheral lymphocytes reflect the same disease processes occurring in the AD brain sufficiently to serve as biomarkers.
- Findingcitation
PKR represents an initiator of deregulated translation via two consecutive targets p53 and Redd1 in AD lymphocytes.
“In addition, we reported that PKR represents an initiator of deregulated translation via two consecutive targets p53 and Redd1 in AD lymphocytes [102].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [102] Damjanac M Page G Ragot S PKR, a cognitive decline biomarker, can regulate translation via two consecutive molecular targets p53 and Redd1 in lymphocytes of AD patients J Cell Mol Med 2009 [Epub ahead of press] PMC6529964 19210572 source
- Rests on an assumption: The molecular link p53/Redd1/TSC2 operates in human AD brain as it does in cell models.
- Findingcitation
p53 and Redd1 at transcriptional and translational levels were not correlated with the MMSE scores.
“However, p53 and Redd1 at transcriptional and translational levels were not correlated with the MMSE scores [102].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [102] Damjanac M Page G Ragot S PKR, a cognitive decline biomarker, can regulate translation via two consecutive molecular targets p53 and Redd1 in lymphocytes of AD patients J Cell Mol Med 2009 [Epub ahead of press] PMC6529964 19210572 source
- Premisecitation
In brains of AD patients, Pt451-PKR was localized in nuclei and around amyloid deposits.
“In brains of AD patients, Pt451-PKR was also localized in nuclei and around amyloid deposits but the Braak score was not indicated in papers [50, 95].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [50] Chang RC Wong AK Ng HK Phosphorylation of eukaryotic initiation factor-2alpha (eIF2alpha) is associated with neuronal degeneration in Alzheimer's disease Neuroreport 2002 13 2429 32 12499843 source
- cites [95] Onuki R Bando Y Suyama E An RNA-dependent protein kinase is involved in tunicamycin-induced apoptosis and Alzheimer's disease EMBO J 2004 23 959 68 14765129 PMC380987 source
The ‘Levels of nuclear PKR in AD brain tissue’ section (page not available) reports nuclear PKR aggregates and elevated phosphorylated PKR in AD brains. It does not report localization around amyloid deposits or establish that the localized protein was phosphorylated specifically at Thr451; the paper identifies its anti-phospho-PKR antibody as recognizing Thr446. No Braak score is given in the passages examined. (LLM, conf=0.90)
Experimental — accuracy not yet measured
- Premisecitation
Five major effectors, eIF2a, FADD, p53, NF-κB and ATF-3, are implicated in mediating PKR-induced apoptosis.
“At present, there are five major effectors, eIF2a, FADD, p53, NF-κB and ATF-3 implicated in mediating PKR-induced apoptosis [171].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [171] Garcia MA Gil J Ventoso I Impact of protein kinase PKR in cell biology: from antiviral to antiproliferative action Microbiol Mol Biol Rev 2006 70 1032 60 17158706 PMC1698511 source
The “Role of PKR Effectors in Apoptosis Induction” section implicates eIF-2α, NF-κB, ATF-3 and p53 in PKR-induced apoptosis. “Connections between PKR and the Apoptotic Machinery” says PKR-induced apoptosis mainly involves the FADD/caspase-8 pathway. The paper therefore supports a role for all five named factors, but does not identify them as a definitive set of five major effectors; it says “at least” four effectors are implicated and discusses FADD as part of the apoptotic machinery. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Premisecitation
In Alzheimer's disease, eIF2a and p53 are targets of PKR.
“In AD, eIF2a and p53 are targets of PKR [28, 30, 97, 102, 129].”
Quote in the paperNot a substantial claim3 of 5 sources checked- cites [28] Suen KC Yu MS So KF Upstream signaling pathways leading to the activation of double-stranded RNA-dependent serine/threonine protein kinase in beta-amyloid peptide neurotoxicity J Biol Chem 2003 278 49819 27 12975376 source
The Abstract states that activated PKR phosphorylates eIF2α, and the Discussion links phosphorylated PKR and eIF2α to degenerating neurons in AD patients. The paper does not establish p53 as a PKR target in AD; a search for p53 found no passage addressing that part of the claim. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [30] Chang RC Suen KC Ma CH Involvement of double-stranded RNA-dependent protein kinase and phosphorylation of eukaryotic initiation factor-2alpha in neuronal degeneration J Neurochem 2002 83 1215 25 12437593 source
The paper’s Abstract states that activated PKR phosphorylates eIF2α, and its experimental findings link PKR activity to eIF2α phosphorylation in amyloid-β-treated neuronal cultures. The cited passages do not identify p53 as a PKR target, and the experiments use neuronal models rather than establishing both targets in people with Alzheimer’s disease. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [97] Page G Rioux Bilan A Ingrand S Activated double-stranded RNA-dependent protein kinase and neuronal death in models of Alzheimer's disease Neuroscience 2006 139 1343 54 16581193 source
- cites [102] Damjanac M Page G Ragot S PKR, a cognitive decline biomarker, can regulate translation via two consecutive molecular targets p53 and Redd1 in lymphocytes of AD patients J Cell Mol Med 2009 [Epub ahead of press] PMC6529964 19210572 source
- cites [129] Morel M Couturier J Pontcharraud R Evidence of molecular links between PKR and mTOR signalling pathways in Aβ neurotoxicity: role of p53, Redd1 and TSC2 Neurobiol Dis 2009 [Epub ahead of print 22 July 2009] 19631745 source
- Premisecitation
In virus-infected cells, NF-κB and ATF-3 activation by PKR is involved in apoptosis induction.
“NF-kB and ATF-3 activation by PKR is also involved in apoptosis induction as shown in virus-infected cells [69, 174–176].”
Quote in the paperNot a substantial claim1 of 4 sources checked- cites [69] Guerra S Lopez-Fernandez LA Garcia MA Human gene profiling in response to the active protein kinase, interferon-induced serine/threonine protein kinase (PKR), in infected cells. Involvement of the transcription factor ATF-3 IN PKR-induced apoptosis J Biol Chem 2006 281 18734 45 16613840 source
- cites [174] Gil J Alcami J Esteban M Induction of apoptosis by double-stranded-RNA-dependent protein kinase (PKR) involves the alpha subunit of eukaryotic translation initiation factor 2 and NF-kappaB Mol Cell Biol 1999 19 4653 63 10373514 PMC84263 source
- cites [175] Taddeo B Luo TR Zhang W Activation of NF-kappaB in cells productively infected with HSV-1 depends on activated protein kinase R and plays no apparent role in blocking apoptosis Proc Natl Acad Sci USA 2003 100 12408 13 14530405 PMC218771 source
- cites [176] Bonnet MC Daurat C Ottone C The N-terminus of PKR is responsible for the activation of the NF-kappaB signaling pathway by interacting with the IKK complex Cell Signal 2006 18 1865 75 16600570 source
- Premisecitation
PKR is implicated in infectious, inflammatory and ischemic pathology without cognitive decline.
“PKR is not specific to neurodegenerative disease because it is also implied in infectious [61, 171], inflammatory [172, 173] and ischemic [171] pathology without cognitive decline.”
Quote in the paperSubstantial claim1 of 4 sources checked- cites [61] Balachandran S Barber GN PKR in innate immunity, cancer, and viral oncolysis Methods Mol Biol 2007 383 277 301 18217692 source
- cites [171] Garcia MA Gil J Ventoso I Impact of protein kinase PKR in cell biology: from antiviral to antiproliferative action Microbiol Mol Biol Rev 2006 70 1032 60 17158706 PMC1698511 source
The Introduction describes PKR as a defense mechanism against infection, and “PKR Mediates Apoptosis Induced by Different Stimuli” links it to pathogenic outcomes after viral infection. The cited paper’s discussion of ischemia/reperfusion injury concerns a stress that activates JNK; it does not establish PKR’s involvement in ischemic pathology or address whether cognitive decline is absent. Inflammatory pathology is attributed to other citations in the citing sentence. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [172] Gern JE French DA Grindle KA Double-stranded RNA induces the synthesis of specific chemokines by bronchial epithelial cells Am J Respir Cell Mol Biol 2003 28 731 7 12600836 source
- cites [173] Matsukura S Kokubu F Kurokawa M Role of RIG-I, MDA-5, and PKR on the expression of inflammatory chemokines induced by synthetic dsRNA in airway epithelial cells Int Arch Allergy Immunol 2007 143 80 3 17541283 source
- Premisecitation
PKR is active in other neurodegenerative diseases, including Parkinson's disease, Huntington's disease and amyotrophic lateral sclerosis.
“PKR is not specific to AD because it is also known to be active in other neurodegenerative diseases like Parkinson's disease [49, 170], Huntington's disease [48] and amyotrophic lateral sclerosis [96].”
Quote in the paperNot a substantial claim1 of 4 sources checked- cites [49] Bando Y Onuki R Katayama T Double-strand RNA dependent protein kinase (PKR) is involved in the extrastriatal degeneration in Parkinson's disease and Huntington's disease Neurochem Int 2005 46 11 8 15567511 source
- cites [170] Ryu EJ Harding HP Angelastro JM Endoplasmic reticulum stress and the unfolded protein response in cellular models of Parkinson's disease J Neurosci 2002 22 10690 8 12486162 PMC6758450 source
The citation is attached to the Parkinson’s disease portion of the sentence, not the Huntington’s disease or ALS portions. The Abstract and the section ‘ER stress and the UPR are induced by 6-OHDA exposure’ report activation of PERK (PKR-like ER kinase) in Parkinson’s disease models, but do not report activation of PKR. A search for PKR found no passage establishing its activity. (LLM, conf=0.77)
Experimental — accuracy not yet measured - cites [48] Peel AL Rao RV Cottrell BA Double-stranded RNA-dependent protein kinase, PKR, binds preferentially to Huntington's disease (HD) transcripts and is activated in HD tissue Hum Mol Genet 2001 10 1531 8 11468270 source
- cites [96] Peel AL PKR activation in neurodegenerative disease J Neuropathol Exp Neurol 2004 63 97 105 14989595 source
- Findingown data
Western blot results revealed an increase of Pt451-PKR and PS51-eIF2α levels in the brains of APPsl/PS1 KI transgenic mice.
“Western blot results revealed an increase of Pt451-PKR and PS51-eIF2α levels in the brains of APPsl/PS1 KI transgenic mice.”
Quote in the paperSubstantial claim - Findingown data
In brains of APPsl/PS1 KI mice at 3 and 6 months of age, mTOR levels were not modified.
“In the brains of APPsl/PS1 KI mice at 3 and 6 months of age, we also analysed upstream and downstream factors of mTOR. Although mTOR levels were not modified, we found a great activation of Akt with a robust accumulation of PT308-Akt in non-apoptotic neurons at 6 months of age.”
Quote in the paperSubstantial claim - Findingown data
In brains of APPsl/PS1 KI mice at 6 months of age, there was a great activation of Akt with a robust accumulation of PT308-Akt in non-apoptotic neurons.
“Although mTOR levels were not modified, we found a great activation of Akt with a robust accumulation of PT308-Akt in non-apoptotic neurons at 6 months of age.”
Quote in the paperSubstantial claim - Findingown data
Phosphorylated PKR and eIF2α levels were significantly increased in lymphocytes of AD patients.
“our results showed that phosphorylated PKR and eIF2α levels were significantly increased in lymphocytes of AD patients.”
- Also stated in: § Dysfunctions of protein synthesis mediated by PKR- and mTOR-dependent signalling pathways · plain
“Interestingly, our results showed that the activation of PKR and eIF2α was significantly increased in lymphocytes of AD patients.”
Quote in the paperSubstantial claim - Also stated in: § Dysfunctions of protein synthesis mediated by PKR- and mTOR-dependent signalling pathways · plain
- Findingown data
In a larger cohort, there was no significant difference between AD and control groups for the levels of PT1462-TSC2, PS2448-mTOR and PT389-p70S6K.
“However, in a larger cohort, our recent results showed no significant difference between AD and control groups for the levels of PT1462-TSC2 (control: 2.39 ± 0.59 [n= 36]; AD: 2.48 ± 0.51 [n= 50]), PS2448-mTOR (control: 0.9 ± 0.1 [n= 38]; AD: 1.34 ± 0.2 [n= 49]) and PT389-p70S6K (Control: 4.83 ± 1.01 [n= 32]; AD: 3.87 ± 0.53 [n= 50]).”
Quote in the paperSubstantial claim - Findingown data
In APPsl/PS1 KI mice, Pt451-PKR was localized in nuclei of neurons at 3 months of age before the presence of amyloid deposits and astrogliosis.
“In the last mouse model, Pt451-PKR was localized in nuclei of neurons at 3 months of age before the presence of amyloid deposits and astrogliosis.”
Quote in the paperSubstantial claim - Findingown data
In APPsl, APPsl/PS1 and APPSL/PS1 KI mice, Pt451-PKR was expressed around amyloid deposits.
“Furthermore, we showed in APPsl, APPsl/PS1 and APPSL/PS1 KI that Pt451-PKR was expressed around amyloid deposits (data not published) as shown by Peel and Bredesen in another APP transgenic mouse model [29].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [29] Peel AL Bredesen DE Activation of the cell stress kinase PKR in Alzheimer's disease and human amyloid precursor protein transgenic mice Neurobiol Dis 2003 14 52 62 13678666 source
- Findingown data
The number of mononuclear cells was significantly higher (43%) in AD patients than in controls.
“However, our data showed that the number of mononuclear cells was significantly higher (43%) in AD patients than in controls.”
Quote in the paperNot a substantial claim - Interpretationown data
These findings demonstrate a clear dissociation between Akt and ribosomal S6K signalling markers in these mice.
“These findings demonstrate a clear dissociation between Akt and ribosomal S6K signalling markers in these mice which could be involved in the AD pathological process [91].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [91] Damjanac M Rioux Bilan A Paccalin M Dissociation of Akt/PKB and ribosomal S6 kinase signaling markers in a transgenic mouse model of Alzheimer's disease Neurobiol Dis 2008 29 354 67 18023354 source
- Interpretationreasoning
PKR could be involved in the pathogenesis of AD.
“All these results suggest that PKR could be involved in the pathogenesis of AD.”
Quote in the paperSubstantial claim- Rests on an assumption: PKR activation is a cause, not merely a consequence, of the neurodegenerative cascade in AD.
- Interpretationown data
p53, Redd1 and TSC2 could represent molecular links between PKR and mTOR signalling pathways.
“Recently, we showed that p53, regulated protein in development and DNA damage response 1 and tuberous sclerosis complex 2 could represent molecular links between PKR and mTOR signalling pathways.”
Quote in the paperSubstantial claim- Rests on an assumption: The molecular link p53/Redd1/TSC2 operates in human AD brain as it does in cell models.
- Premisecitation
Phosphorylated PKR and eIF2α co-localized with phosphorylated τ-protein in affected neurons in AD brains.
“Some data also showed that phosphorylated PKR and eIF2α co-localized with phosphorylated τ-protein in affected neurons in AD brains [50].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [50] Chang RC Wong AK Ng HK Phosphorylation of eukaryotic initiation factor-2alpha (eIF2alpha) is associated with neuronal degeneration in Alzheimer's disease Neuroreport 2002 13 2429 32 12499843 source
- Premisecitation
When phosphorylated, eIF2α becomes a competitive inhibitor of the 5-subunit guanine nucleotide exchange factor eIF2B, decreasing TC assembly.
“When phosphorylated, eIF2α becomes a competitive inhibitor of the 5-subunit guanine nucleotide exchange factor, eIF2B, and decreasing TC assembly [44, 45] (Fig. 1).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [44] Williams BR PKR; a sentinel kinase for cellular stress Oncogene 1999 18 6112 20 10557102 source
- cites [45] Dever TE Feng L Wek RC Phosphorylation of initiation factor 2 alpha by protein kinase GCN2 mediates gene-specific translational control of GCN4 in yeast Cell 1992 68 585 96 1739968 source
- Premisecitation
Aβ exposure induces a sustained reduction of mTOR/p70S6K signalling in neuroblastoma cell cultures.
“Aβ exposure induces a sustained reduction of mTOR/p70S6K signalling in neuroblastoma cell cultures marked by a progressive decrease of phosphorylated mTOR and phosphorylated p70S6K [27, 89].”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [27] Lafay-Chebassier C Paccalin M Page G mTOR/p70S6k signalling alteration by Abeta exposure as well as in APP-PS1 transgenic models and in patients with Alzheimer's disease J Neurochem 2005 94 215 25 15953364 source
- cites [89] Lafay-Chebassier C Perault-Pochat MC Page G The immunosuppressant rapamycin exacerbates neurotoxicity of Abeta peptide J Neurosci Res 2006 84 1323 34 16955484 source
- Premisecitation
Other studies showed significant increases of P-p70S6K (T389 and T421/S424), P-mTOR (S2481), P-eIF4E and P-4E-BP1 (T70 and S65) in homogenates of the medial temporal cortex in AD patients as compared to control brains.
“Other studies showed significant increases of P-p70S6K (T389 and T421/S424), P-mTOR (S2481), P-eIF4E and P-4E-BP1 (T70 and S65) in homogenates of the medial temporal cortex in AD patients as compared to control brains [92, 93].”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [92] Li X Alafuzoff I Soininen H Levels of mTOR and its downstream targets 4E-BP1, eEF2, and eEF2 kinase in relationships with tau in Alzheimer's disease brain FEBS J 2005 272 4211 20 16098202 source
- cites [93] Li X An WL Alafuzoff I Phosphorylated eukaryotic translation factor 4E is elevated in Alzheimer brain Neuroreport 2004 15 2237 40 15371741 source
- Premisecitation
The levels of the mTOR signalling markers were significantly and positively correlated with total τ and P-t.
“The levels of the mTOR signalling markers were significantly and positively correlated with total τ and P-t[92, 93].”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [92] Li X Alafuzoff I Soininen H Levels of mTOR and its downstream targets 4E-BP1, eEF2, and eEF2 kinase in relationships with tau in Alzheimer's disease brain FEBS J 2005 272 4211 20 16098202 source
- cites [93] Li X An WL Alafuzoff I Phosphorylated eukaryotic translation factor 4E is elevated in Alzheimer brain Neuroreport 2004 15 2237 40 15371741 source
- Interpretationreasoning
Peripheral T cells could exert their effects on the AD process without entering the CNS.
“Peripheral T cells could exert their effects on the AD process without entering the CNS.”
Quote in the paperNot a substantial claim - Interpretationreasoning
The inhibition of PKR activity may represent an effective therapeutic strategy in the treatment of AD.
“The inhibition of PKR activity may represent an effective therapeutic strategy in the treatment of AD.”
Quote in the paperSubstantial claim- Rests on an assumption: PKR activation is a cause, not merely a consequence, of the neurodegenerative cascade in AD.
- Premisecitation
Activated T cells exist as infiltrates in the brains of Alzheimer's disease patients.
“Furthermore, activated T cells also exist as infiltrates in the brains of AD patients [158–160].”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [158] Itagaki S McGeer PL Akiyama H Presence of T-cytotoxic suppressor and leucocyte common antigen positive cells in Alzheimer's disease brain tissue Neurosci Lett 1988 91 259 64 2972943 source
- cites [159] Rogers J Luber-Narod J Styren SD Expression of immune system-associated antigens by cells of the human central nervous system: relationship to the pathology of Alzheimer's disease Neurobiol Aging 1988 9 339 49 3263583 source
- cites [160] Togo T Akiyama H Iseki E Occurrence of T cells in the brain of Alzheimer's disease and other neurological diseases J Neuroimmunol 2002 124 83 92 11958825 source
- Premisecitation
Biological analysis of the 18 proteins points to systemic deregulation of haematopoiesis, immune responses, apoptosis and neuronal support in pre-symptomatic AD.
“Biological analysis of the 18 proteins points to systemic deregulation of haematopoiesis, immune responses, apoptosis and neuronal support in pre-symptomatic AD [145].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [145] Ray S Britschgi M Herbert C Classification and prediction of clinical Alzheimer's diagnosis based on plasma signaling proteins Nat Med 2007 13 1359 62 17934472 source
- Premisecitation
Peripheral T cells of Alzheimer's disease patients overexpress CXCR2.
“Furthermore, recent evidence revealed that peripheral T cells of AD patients overexpressed CXCR2 (CXC chemokine receptor 2), which is intracerebral microglial TNF-α-dependent and is associated with T-cell adhesion on brain endothelia and transendothelial migration [167].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [167] Liu YJ Guo DW Tian L Peripheral T cells derived from Alzheimer's disease patients overexpress CXCR2 contributing to its transendothelial migration, which is microglial TNF-alpha-dependent Neurobiol Aging 2008 DOI: 10.1016/j.neurobiolaging.2008.03.024 18462836 source
- Premisecitation
Akt signalling pathway is up-regulated in lymphocytes.
“Second, Akt signalling pathway is up-regulated in lymphocytes [148].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [148] Juntilla MM Koretzky GA Critical roles of the PI3K/Akt signaling pathway in T cell development Immunol Lett 2008 116 104 10 18243340 PMC2322870 source
- Premisecitation
There is some evidence of elevated IL-6 levels in monocytes derived from AD patients.
“In fact, there is some evidence of elevated IL-6 levels in monocytes derived from AD patients [154–156].”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [154] Huberman M Sredni B Stern L IL-2 and IL-6 secretion in dementia: correlation with type and severity of disease J Neurol Sci 1995 130 161 4 8586980 source
- cites [155] Shalit F Sredni B Stern L Elevated interleukin-6 secretion levels by mononuclear cells of Alzheimer's patients Neurosci Lett 1994 174 130 2 7970167 source
- cites [156] Gutierrez EG Banks WA Kastin AJ Murine tumor necrosis factor alpha is transported from blood to brain in the mouse J Neuroimmunol 1993 47 169 76 8370768 source
- Premisecitation
A cell cycle regulatory failure occurs in lymphocytes as it was observed in neurons.
“Nevertheless, despite these several defence mechanisms, authors showed a cell cycle regulatory failure in lymphocytes as it was observed in neurons [130–132, 168, 169].”
Quote in the paperSubstantial claim0 of 5 sources checked- cites [130] Liu DX Greene LA Neuronal apoptosis at the G1/S cell cycle checkpoint Cell Tissue Res 2001 305 217 28 11545259 source
- cites [131] Nagy Z Cell cycle regulatory failure in neurones: causes and consequences Neurobiol Aging 2000 21 761 9 11124420 source
- cites [132] Neve RL McPhie DL The cell cycle as a therapeutic target for Alzheimer's disease Pharmacol Ther 2006 111 99 113 16274748 source
- cites [168] Nagy Z Combrinck M Budge M Cell cycle kinesis in lymphocytes in the diagnosis of Alzheimer's disease Neurosci Lett 2002 317 81 4 11755245 source
- cites [169] Stieler JT Lederer C Bruckner MK Impairment of mitogenic activation of peripheral blood lymphocytes in Alzheimer's disease Neuroreport 2001 12 3969 72 11742221 source
- Interpretationreasoning
p53, Redd1 and TSC2 can be molecular links between the up-regulation of PKR and the down-regulation of mTOR largely described in AD.
“p53, Redd1 and TSC2 can be molecular links between the up-regulation of PKR and the down-regulation of mTOR largely described in AD (Fig. 2).”
Quote in the paperSubstantial claim- Rests on an assumption: The molecular link p53/Redd1/TSC2 operates in human AD brain as it does in cell models.
- Interpretationreasoning
These results underline the critical role of PKR in the biochemical cascade leading to death in AD.
“Finally, these results underline the critical role of PKR in the biochemical cascade leading to death in AD.”
Quote in the paperSubstantial claim- Rests on an assumption: The molecular link p53/Redd1/TSC2 operates in human AD brain as it does in cell models.
- Premisecitation
PKR has a role in apoptosis induction.
“Indeed, many studies revealed the role of PKR in apoptosis induction.”
Quote in the paperSubstantial claim - Interpretationcitation
PKR is not specific to neurodegenerative disease.
“PKR is not specific to neurodegenerative disease because it is also implied in infectious [61, 171], inflammatory [172, 173] and ischemic [171] pathology without cognitive decline.”
Quote in the paperSubstantial claim - Interpretationreasoning
In the brain, the disturbance of translation control is associated with neuronal death.
“In the brain, this disturbance is associated with the neuronal death while in peripheral mononuclear cells of AD patients, PKR can control the cell cycle and the inflammatory reaction.”
Quote in the paperSubstantial claim - Premisecitation
In brains of APPSL/PS1 KI mice, PKR was early up-regulated before the massive neuronal loss.
“In brains of APPSL/PS1 KI mice, PKR was early up-regulated before the massive neuronal loss [97].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [97] Page G Rioux Bilan A Ingrand S Activated double-stranded RNA-dependent protein kinase and neuronal death in models of Alzheimer's disease Neuroscience 2006 139 1343 54 16581193 source
- Interpretationown data
PKR can represent an initiator of the dysfunction of the control of translation described in Alzheimer's disease.
“In conclusion, data revealed that PKR can represent an initiator of the dysfunction of the control of translation described in AD.”
Quote in the paperSubstantial claim - Interpretationreasoning
PKR could be a critical target in Alzheimer's disease because of its early activation and its apoptotic effectors shared with Aβ.
“Taken together, PKR could be a critical target in AD because of its early activation and its apoptotic effectors shared with Aβ.”
Quote in the paperSubstantial claim - Interpretationcitation
PKR is not specific to Alzheimer's disease.
“PKR is not specific to AD because it is also known to be active in other neurodegenerative diseases like Parkinson's disease [49, 170], Huntington's disease [48] and amyotrophic lateral sclerosis [96].”
Quote in the paperSubstantial claim - Premisecitation
In patients, PKR levels were correlated to the severity of the disease.
“In patients, the PKR levels were correlated to the severity of the disease [101].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [101] Paccalin M Pain-Barc S Pluchon C Activated mTOR and PKR kinases in lymphocytes correlate with memory and cognitive decline in Alzheimer's disease Dement Geriatr Cogn Disord 2006 22 320 6 16954686 source
- May combine two claims. 27
- Classified as probably not a substantial claim. 19
May combine two claims.
PremisecitationActivation of PKR can either induce apoptotic cell death or at least enhance this process when apoptosis is initiated by other agents.
“Several studies established that activation of PKR can either induce apoptotic cell death or at least enhance this process when apoptosis is initiated by other agents [61, 62].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [61] Balachandran S Barber GN PKR in innate immunity, cancer, and viral oncolysis Methods Mol Biol 2007 383 277 301 18217692 source
- cites [62] Der SD Yang YL Weissmann C A double-stranded RNA-activated protein kinase-dependent pathway mediating stress-induced apoptosis Proc Natl Acad Sci USA 1997 94 3279 83 9096384 PMC20360 source
May combine two claims.
FindingcitationPKR and eIF2α levels were negatively correlated with cognitive and memory test scores in AD patients, with higher PKR expression associated with lower cognitive test scores.
“These modifications were significantly correlated with cognitive and memory test scores performed in AD patients.”
- Also stated in: § Dysfunctions of protein synthesis mediated by PKR- and mTOR-dependent signalling pathways · plain
“These PKR and eIF2α levels were negatively correlated with cognitive and memory test scores performed in AD patients: the higher expression of PKR with the lower cognitive test score [101, 102].”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [101] Paccalin M Pain-Barc S Pluchon C Activated mTOR and PKR kinases in lymphocytes correlate with memory and cognitive decline in Alzheimer's disease Dement Geriatr Cogn Disord 2006 22 320 6 16954686 source
- cites [102] Damjanac M Page G Ragot S PKR, a cognitive decline biomarker, can regulate translation via two consecutive molecular targets p53 and Redd1 in lymphocytes of AD patients J Cell Mol Med 2009 [Epub ahead of press] PMC6529964 19210572 source
- Also stated in: § Dysfunctions of protein synthesis mediated by PKR- and mTOR-dependent signalling pathways · plain
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationmTOR can phosphorylate eIF4G and ribosomal S6 kinases such as p70S6K, which phosphorylate eIF4B, enhancing its interaction with eIF3 and stimulating protein synthesis.
“mTOR can also phosphorylate eIF4G, the ribosomal S6 kinases (RS6K) such as p70S6K which phosphorylate eIF4B, enhancing its interaction with eIF3 and stimulate protein synthesis [75–77] (Fig. 1).”
Quote in the paperNot a substantial claim1 of 3 sources checked- cites [75] Ma XM Blenis J Molecular mechanisms of mTOR-mediated translational control Nat Rev Mol Cell Biol 2009 10 307 18 19339977 source
- cites [76] Holz MK Ballif BA Gygi SP mTOR and S6K1 mediate assembly of the translation preinitiation complex through dynamic protein interchange and ordered phosphorylation events Cell 2005 123 569 80 16286006 source
The Discussion reports that mTOR/raptor phosphorylates S6K1, after which activated S6K1 phosphorylates eIF4B and phosphorylated eIF4B is recruited to the eIF3 preinitiation complex. The Results link this sequence to translation initiation. The paper describes mTOR phosphorylating 4E-BP1, followed by recruitment of eIF4G; it does not support the claim that mTOR phosphorylates eIF4G. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [77] Dufner A Thomas G Ribosomal S6 kinase signaling and the control of translation Exp Cell Res 1999 253 100 9 10579915 source
May combine two claims.
InterpretationreasoningThere are two different neuronal responses: some neurons are characterized by a highly reactive Akt/mTOR/RS6K signalling pathway involved in τ-hyperphosphorylation and in future NFTs, and other neurons display a total inhibition of PT389-p70/85S6K leading to the apoptotic process in AD.
“Taken together, one may propose that there are two different neuronal responses: some neurons are characterized by a highly reactive Akt/mTOR/RS6K signalling pathway involved in τ-hyperphospho-rylation and in future NFTs and other neurons displayed a total inhibition of PT389-p70/85S6K leading to the apoptotic process in AD [91, 94].”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [91] Damjanac M Rioux Bilan A Paccalin M Dissociation of Akt/PKB and ribosomal S6 kinase signaling markers in a transgenic mouse model of Alzheimer's disease Neurobiol Dis 2008 29 354 67 18023354 source
- cites [94] Pei JJ Hugon J mTOR-dependent signalling in Alzheimer's disease J Cell Mol Med 2008 12 2525 32 19210753 PMC3828871 source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationRedd1 is a new stress-induced protein and a negative regulator of mTOR through the TSC1/TSC2 complex.
“Redd1 is a new stress-induced protein and is known as a negative regulator of mTOR through TSC1/TSC2 complex [106–115].”
Quote in the paperNot a substantial claim6 of 10 sources checked- cites [106] Ellisen LW Ramsayer KD Johannessen CM REDD1, a developmentally regulated transcriptional target of p63 and p53, links p63 to regulation of reactive oxygen species Mol Cell 2002 10 995 1005 12453409 source
The Results report that REDD1 protein increases after ionizing radiation or MMS treatment and identify REDD1 as the stress-induced gene RTP801 (page not provided). The cited paper does not establish that REDD1 negatively regulates mTOR through the TSC1/TSC2 complex; its Discussion instead focuses on regulation of reactive oxygen species. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [107] Jin HO An S Lee HC Hypoxic condition- and high cell density-induced expression of Redd1 is regulated by activation of hypoxia-inducible factor-1alpha and Sp1 through the phosphatidylinositol 3-kinase/Akt signaling pathway Cell Signal 2007 19 1393 403 17307335 source
- cites [108] Brugarolas J Lei K Hurley RL Regulation of mTOR function in response to hypoxia by REDD1 and the TSC1/TSC2 tumor suppressor complex Genes Dev 2004 18 2893 904 15545625 PMC534650 source
The Discussion (page not supplied) describes Redd1 as stress-induced and reports that its suppression of mTOR signaling requires Tsc2. It presents signaling through the Tsc1/Tsc2 complex as the simplest model, however, and says a parallel pathway cannot be excluded; the claim states that mechanism more definitively than the paper does. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [109] Corradetti MN Inoki K Guan KL The stress-inducted proteins RTP801 and RTP801L are negative regulators of the mammalian target of rapamycin pathway J Biol Chem 2005 280 9769 72 15632201 source
- cites [110] Shoshani T Faerman A Mett I Identification of a novel hypoxia-inducible factor 1-responsive gene, RTP801, involved in apoptosis Mol Cell Biol 2002 22 2283 93 11884613 PMC133671 source
- cites [111] Sofer A Lei K Johannessen CM Regulation of mTOR and cell growth in response to energy stress by REDD1 Mol Cell Biol 2005 25 5834 45 15988001 PMC1168803 source
- cites [112] Ellisen LW Growth control under stress: mTOR regulation through the REDD1-TSC pathway Cell Cycle 2005 4 1500 2 16258273 source
- cites [113] Jozwiak J Jozwiak S Grzela T Positive and negative regulation of TSC2 activity and its effects on downstream effectors of the mTOR pathway Neuromolecular Med 2005 7 287 96 16391386 source
- cites [114] Kimball SR Do AN Kutzler L Rapid turnover of the mTOR complex 1 (mTORC1) repressor REDD1 and activation of mTORC1 signaling following inhibition of protein synthesis J Biol Chem 2008 283 3465 75 18070882 PMC2654224 source
- cites [115] Wang H Kubica N Ellisen LW Dexamethasone represses signaling through the mammalian target of rapamycin in muscle cells by enhancing expression of REDD1 J Biol Chem 2006 281 39128 34 17074751 source
May combine two claims.
PremisecitationEndogenous Redd1 is required for both dissociation of endogenous TSC2/14-3-3 proteins and inhibition of mTOR in response to hypoxia.
“A recent study showed that endogenous Redd1 is required for both dissociation of endogenous TSC2/14–3-3 proteins and inhibition of mTOR in response to hypoxia [127].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [127] DeYoung MP Horak P Sofer A Hypoxia regulates TSC1/2-mTOR signaling and tumor suppression through REDD1-mediated 14–3-3 shuttling Genes Dev 2008 22 239 51 18198340 PMC2192757 source
May combine two claims.
PremisecitationPKR activates GSK-3β, which phosphorylates p53 in the nucleus and promotes the proteasomal degradation of p53 by Hdm2-dependent ubiquitination.
“Interestingly, PKR activates GSK-3β, which phosphorylates p53 in nucleus and promotes the proteasomal degradation of p53 by the Hdm2-dependent ubiquitination [121].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [121] Baltzis D Pluquet O Papadakis AI The eIF2α kinases PERK and PKR activate glycogen synthase kinase 3 to promote the proteasomal degradation of p53 J Biol Chem 2007 282 31675 87 17785458 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationT cells can influence microglial differentiation.
“In vitro data showed a ‘cross-talking’ between microglia and T cells, microglia can serve as antigen-presenting cells for Aβ-reactive T cells and, in turn, T cells themselves can influence microglial differentiation [161–163].”
Quote in the paperNot a substantial claim1 of 3 sources checked- cites [161] Monsonego A Imitola J Zota V Microglia-mediated nitric oxide cytotoxicity of T cells following amyloid betapep-tide presentation to Th1 cells J Immunol 2003 171 2216 24 12928365 source
- cites [162] Monsonego A Zota V Karni A Increased T cell reactivity to amyloid beta protein in older humans and patients with Alzheimer disease J Clin Invest 2003 112 415 22 12897209 PMC166296 source
In the passage labeled Figure 4 (page unavailable), the paper suggests that Aβ-reactive T cells might modulate microglial activation at plaque sites. It does not report that T cells influence microglial differentiation, or present in vitro data demonstrating that effect. (LLM, conf=0.83)
Experimental — accuracy not yet measured - cites [163] Seguin R Biernacki K Prat A Differential effects of Th1 and Th2 lymphocyte supernatants on human microglia Glia 2003 42 36 45 12594735 source
May combine two claims.
InterpretationcitationPKR also controls the state of phosphorylation of TSC2 perhaps through the activation of the proteasomal degradation of cyclin D1 involved in the increased phosphorylation of TSC2 when it is associated to CDK4/6.
“Thus, PKR also controls this state of phosphorylation of TSC2 perhaps through the activation of the proteasomal degradation of cyclin D1 involved in the increased phosphorylation of TSC2 when it is associated to CDK4/6 [139].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [139] Zacharek SJ Xiong Y Shumway SD Negative regulation of TSC1-TSC2 by mammalian D-type cyclins Cancer Res 2005 65 11354 60 16357142 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationGlial cells can mediate the permeability of the blood brain barrier to recruit specialized immune cells from the periphery such as T cells.
“It is also known that glial cells can mediate the permeability of blood brain barrier to recruit specialized immune cells from the periphery such as T cells [164].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [164] Farfara D Lifshitz V Frenkel D Neuroprotective and neurotoxic properties of glial cells in the pathogenesis of Alzheimer's disease J Cell Mol Med 2008 12 762 80 18363841 PMC4401126 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationT-helper 1 cells can promote microglial cell activation through the secretion of IFN-γ.
“T-helper 1 cells can promote microglial cell activation through the secretion of IFN-γ, which also up-regulates the expression major histocompatibility complex class II molecules by microglial cells, thereby enhancing the interaction between T cells and microglial cells [164, 165].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [164] Farfara D Lifshitz V Frenkel D Neuroprotective and neurotoxic properties of glial cells in the pathogenesis of Alzheimer's disease J Cell Mol Med 2008 12 762 80 18363841 PMC4401126 source
- cites [165] Akiyama H Barger S Barnum S Inflammation and Alzheimer's disease Neurobiol Aging 2000 21 383 421 10858586 PMC3887148 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationMicroglia can serve as antigen-presenting cells for Aβ-reactive T cells.
“In vitro data showed a ‘cross-talking’ between microglia and T cells, microglia can serve as antigen-presenting cells for Aβ-reactive T cells and, in turn, T cells themselves can influence microglial differentiation [161–163].”
Quote in the paperNot a substantial claim1 of 3 sources checked- cites [161] Monsonego A Imitola J Zota V Microglia-mediated nitric oxide cytotoxicity of T cells following amyloid betapep-tide presentation to Th1 cells J Immunol 2003 171 2216 24 12928365 source
- cites [162] Monsonego A Zota V Karni A Increased T cell reactivity to amyloid beta protein in older humans and patients with Alzheimer disease J Clin Invest 2003 112 415 22 12897209 PMC166296 source
The discussion following Figure 4 says Aβ is processed and presented by antigen-presenting cells to Aβ-reactive T cells. It also proposes that local APCs in the brain may capture Aβ, but it does not identify those cells as microglia or show microglia presenting Aβ to T cells. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [163] Seguin R Biernacki K Prat A Differential effects of Th1 and Th2 lymphocyte supernatants on human microglia Glia 2003 42 36 45 12594735 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationIFN-γ up-regulates the expression of major histocompatibility complex class II molecules by microglial cells.
“T-helper 1 cells can promote microglial cell activation through the secretion of IFN-γ, which also up-regulates the expression major histocompatibility complex class II molecules by microglial cells, thereby enhancing the interaction between T cells and microglial cells [164, 165].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [164] Farfara D Lifshitz V Frenkel D Neuroprotective and neurotoxic properties of glial cells in the pathogenesis of Alzheimer's disease J Cell Mol Med 2008 12 762 80 18363841 PMC4401126 source
- cites [165] Akiyama H Barger S Barnum S Inflammation and Alzheimer's disease Neurobiol Aging 2000 21 383 421 10858586 PMC3887148 source
May combine two claims.
FindingcitationA progressive increase of apoptotic nuclei is observed at 3, 6 and 12 months of age in APPsl/PS1 KI mice and PKR is closely co-localized with DNA strand breaks in apoptotic nuclei of hippocampal neurons.
“A progressive increase of apoptotic nuclei is also observed at 3, 6 and 12 months of age in these mice and PKR is closely co-localized with DNA strand breaks in apoptotic nuclei of hippocampal neurons [97].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [97] Page G Rioux Bilan A Ingrand S Activated double-stranded RNA-dependent protein kinase and neuronal death in models of Alzheimer's disease Neuroscience 2006 139 1343 54 16581193 source
May combine two claims.
Findingown dataIn brains of PS1 KI and APPSL/PS1 KI mice, there was a significant decrease of p70/85S6K activation with very weak or no nucleocytoplasmic PT389-p70/85S6K staining in apoptotic neurons of APPSL/PS1 KI mice.
“By contrast, a significant decrease of the p70/85S6K activation was observed in brains of PS1 KI and APPSL/PS1 KI mice with a very weak or no nucleocytoplasmic PT389-p70/85S6K staining in apoptotic neurons of APPSL/PS1 KI mice.”
Quote in the paperSubstantial claimMay combine two claims.
FindingcitationIn lymphocytes of AD patients, the PT389-p70S6K/total p70S6K ratio was reduced compared to control individuals and levels were positively correlated with MMSE scores.
“Furthermore, in the lymphocytes of AD patients the PT389-p70S6K/total p70S6K ratio was reduced in AD patients (n= 26) compared to control individuals (n= 28) and levels were positively correlated with Mini Mental Status Examination (MMSE) scores [27].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [27] Lafay-Chebassier C Paccalin M Page G mTOR/p70S6k signalling alteration by Abeta exposure as well as in APP-PS1 transgenic models and in patients with Alzheimer's disease J Neurochem 2005 94 215 25 15953364 source
May combine two claims.
Findingown dataIn lymphocytes of AD patients, the expression of p53 and Redd1 genes, the activation of p53 and the levels of Redd1 protein were significantly higher compared to age-matched controls.
“The results showed that the expression of p53 and Redd1 genes, the activation of p53 and the levels of Redd1 protein were significantly higher in lymphocytes of AD patients compared to age-matched controls.”
Quote in the paperSubstantial claimMay combine two claims.
FindingcitationTransfection of PKR siRNA to Aβ42-treated SH-SY5Y cells significantly decreased the p66 isoform of p53, the transcriptional expression of Redd1 and increased the levels of phosphorylated TSC2.
“Recently, we showed that the transfection of PKR siRNA to Aβ42-treated SH-SY5Y cells significantly decreased the p66 isoform of p53, the transcriptional expression of Redd1 and increased the levels of phosphorylated TSC2 [129].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [129] Morel M Couturier J Pontcharraud R Evidence of molecular links between PKR and mTOR signalling pathways in Aβ neurotoxicity: role of p53, Redd1 and TSC2 Neurobiol Dis 2009 [Epub ahead of print 22 July 2009] 19631745 source
Probably not a substantial claim: may not pass S4 (based).
Findingown dataThe authors demonstrated physical and functional interactions between PKR and FADD in Aβ neurotoxicity.
“Recently, we demonstrated the physical and functional interactions between PKR and FADD in Aβ neurotoxicity (data submitted).”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationPKR expression is increased with ageing or in neurodegenerative diseases such as AD, Parkinson's disease and Huntington's disease.
“Several studies revealed an increased PKR expression with ageing [47] or in neurodegenerative diseases such as AD, Parkinson's disease, Huntington's disease [48–50]”
Quote in the paperSubstantial claim0 of 4 sources checked- cites [47] Ladiges W Morton J Blakely C Tissue specific expression of PKR protein kinase in aging B6D2F1 mice Mech Ageing Dev 2000 114 123 32 10799709 source
- cites [48] Peel AL Rao RV Cottrell BA Double-stranded RNA-dependent protein kinase, PKR, binds preferentially to Huntington's disease (HD) transcripts and is activated in HD tissue Hum Mol Genet 2001 10 1531 8 11468270 source
- cites [49] Bando Y Onuki R Katayama T Double-strand RNA dependent protein kinase (PKR) is involved in the extrastriatal degeneration in Parkinson's disease and Huntington's disease Neurochem Int 2005 46 11 8 15567511 source
- cites [50] Chang RC Wong AK Ng HK Phosphorylation of eukaryotic initiation factor-2alpha (eIF2alpha) is associated with neuronal degeneration in Alzheimer's disease Neuroreport 2002 13 2429 32 12499843 source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationThere are four different eIF2α kinases in mammals activated by different stress, which phosphorylate the same residue in eIF2α, resulting in down-regulation of general translation.
“There are four different eIF2α kinases in mammals activated by different stress, PKR (double-stranded (ds) RNA-dependent protein kinase), PKR-like endoplasmic reticulum kinase, heme regulated kinase and amino-acid regulated kinase, which phosphorylate the same residue in eIF2α, resulting in down-regulation of general translation [46].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [46] Ron D Harding HP Mathews M Sonenberg N Hershey JWB eIF2α phosphorylation in celluar stress responses and disease In translational control in biology and medicine 2007 New York Cold Spring Harbor Laboratory Press 345 68
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationTSC1 and TSC2 are negative regulators of mTOR phosphorylation by blocking the small GTPase Rheb activity.
“Recently, it has been demonstrated that two tumour suppressor genes, the tuberous sclerosis complex (TSC) gene TSC1 (or Hamartin) and TSC2 (or Tuberin) were negative regulators of mTOR phosphorylation [78] by blocking the small GTPase Rheb activity, which is a positive regulator of mTOR [79, 80].”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [78] Krymskaya VP Tumour suppressors hamartin and tuberin: intracellular signalling Cell Signal 2003 15 729 39 12781866 source
- cites [79] Long X Lin Y Ortiz-Vega S Rheb binds and regulates the mTOR kinase Curr Biol 2005 15 702 13 15854902 source
- cites [80] Manning BD Cantley LC Rheb fills a GAP between TSC and TOR Trends Biochem Sci 2003 28 573 6 14607085 source
May combine two claims.
InterpretationreasoningPKR could be an early biomarker of neuronal death and a critical target for a therapeutic programme in AD.
“PKR could be an early biomarker of the neuronal death and a critical target for a therapeutic programme in AD.”
Quote in the paperSubstantial claim- Rests on an assumption: The molecular and cellular alterations measured in peripheral lymphocytes reflect the same disease processes occurring in the AD brain sufficiently to serve as biomarkers.
- Rests on an assumption: PKR activation is a cause, not merely a consequence, of the neurodegenerative cascade in AD.
Probably not a substantial claim: may not pass S3 (load-bearing).
InterpretationreasoningDifferent types of T cells would be expected to have different effects on microglial cell activation and therefore on amyloid clearance.
“Different types of T cells would be expected to have different effects on microglial cell activation and therefore on amyloid clearance.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationCXCR2 is associated with T-cell adhesion on brain endothelia and transendothelial migration.
“Furthermore, recent evidence revealed that peripheral T cells of AD patients overexpressed CXCR2 (CXC chemokine receptor 2), which is intracerebral microglial TNF-α-dependent and is associated with T-cell adhesion on brain endothelia and transendothelial migration [167].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [167] Liu YJ Guo DW Tian L Peripheral T cells derived from Alzheimer's disease patients overexpress CXCR2 contributing to its transendothelial migration, which is microglial TNF-alpha-dependent Neurobiol Aging 2008 DOI: 10.1016/j.neurobiolaging.2008.03.024 18462836 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe interaction of CD40 on microglia and CD40L on T cells promotes pro-inflammatory microglial cell activation in response to Aβ.
“A study has shown that the interaction of CD40 (expressed on the surface of microglia) and CD40L (T-cell receptor) promotes pro-inflammatory microglial cell activation in response to Aβ[166].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [166] Tan J Town T Crawford F Role of CD40 ligand in amyloidosis in transgenic Alzheimer's mice Nat Neurosci 2002 5 1288 93 12402041 source
Probably not a substantial claim: may not pass S1 (asserted), S3 (load-bearing), S4 (based).
InterpretationreasoningExpression of conformationally altered p53 could confer a higher resistance to the activated PKR signalling pathway.
“First, expression of the conformationaly altered p53 could confer a higher resistance to the activated PKR signalling pathway.”
Quote in the paperNot a substantial claim- Rests on an assumption: The molecular and cellular alterations measured in peripheral lymphocytes reflect the same disease processes occurring in the AD brain sufficiently to serve as biomarkers.
May combine two claims.
InterpretationreasoningPKR seems to be the initiator of this deregulation which could be involved in the failure of the re-entry of neurons in cell cycle.
“PKR seems to be the initiator of this deregulation which could be involved in the failure of the re-entry of neurons in cell cycle.”
Quote in the paperSubstantial claim- Rests on an assumption: PKR activation is a cause, not merely a consequence, of the neurodegenerative cascade in AD.
May combine two claims.
PremisecitationPKR is physically associated with p53 and phosphorylated it in mouse embryo fibroblasts cells treated with IFN.
“It is known that PKR is physically associated with p53 and phosphorylated it in mouse embryo fibroblasts cells treated with IFN [64].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [64] Cuddihy AR Wong AH Tam NW The double-stranded RNA activated protein kinase PKR physically associates with the tumor suppressor p53 protein and phosphorylates human p53 on serine 392 in vitro Oncogene 1999 18 2690 702 10348343 source
May combine two claims.
PremisecitationmTOR suppresses caspase-1 activation and orchestrates the defence programme of innate immune cells.
“Third, mTOR suppresses caspase-1 activation and orchestrates the defence programme of innate immune cells [149].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [149] Schmitz F Heit A Dreher S Mammalian target of rapamycin (mTOR) orchestrates the defense program of innate immune cells Eur J Immunol 2008 38 2981 92 18924132 source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationInflammatory mechanisms represent an important component which first contribute to defence mechanisms but secondly, stimulated by degeneration, may significantly contribute to disease progression and chronicity.
“Finally, inflammatory mechanisms represent an important component which, first contribute to defence mechanisms but secondly, stimulated by degeneration, may significantly contribute to disease progression and chronicity [15, 150, 151].”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [15] Heneka MT O’Banion MK Inflammatory processes in Alzheimer's disease J Neuroimmunol 2007 184 69 91 17222916 source
- cites [150] Wyss-Coray T Inflammation in Alzheimer disease: driving force, bystander or beneficial response? Nat Med 2006 12 1005 15 16960575 source
- cites [151] Wyss-Coray T Mucke L Inflammation in neurodegenerative disease – a double-edged sword Neuron 2002 35 419 32 12165466 source
May combine two claims.
InterpretationreasoningStatistical correlations between proteins and genes suggest that active PKR could phosphorylate p53, which could induce the transcription of Redd1 gene.
“Furthermore, statistical correlations between proteins and genes suggest that active PKR could phosphorylate p53, which could induce the transcription of Redd1 gene.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationBlockade of TNF-α production at the periphery prevented histological lesions induced by IL-1β in CNS.
“Recently, it was demonstrated that a blockade of TNF-α production at the periphery prevented histological lesions induced by IL-1β in CNS [157].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [157] Jiang Y Deacon R Anthony DC Inhibition of peripheral TNF can block the malaise associated with CNS inflammatory diseases Neurobiol Dis 2008 32 125 32 18672064 source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationEndogenous Redd1 is induced following energy stress and inhibition of endogenous Redd1 increases cell size in a rapamycin-sensitive manner.
“Data demonstrated that endogenous Redd1 is induced following energy stress and inhibition of endogenous Redd1 increases cell size in a rapamycin-sensitive manner [111].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [111] Sofer A Lei K Johannessen CM Regulation of mTOR and cell growth in response to energy stress by REDD1 Mol Cell Biol 2005 25 5834 45 15988001 PMC1168803 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationSystemic immune response, including T-cell immune response, may be involved in the inflammation process of AD.
“increased studies suggest that systemic immune response, including T-cell immune response, may be involved in the inflammation process of AD [152, 153].”
Quote in the paperNot a substantial claim0 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationCXCR2 is intracerebral microglial TNF-α-dependent.
“Furthermore, recent evidence revealed that peripheral T cells of AD patients overexpressed CXCR2 (CXC chemokine receptor 2), which is intracerebral microglial TNF-α-dependent and is associated with T-cell adhesion on brain endothelia and transendothelial migration [167].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [167] Liu YJ Guo DW Tian L Peripheral T cells derived from Alzheimer's disease patients overexpress CXCR2 contributing to its transendothelial migration, which is microglial TNF-alpha-dependent Neurobiol Aging 2008 DOI: 10.1016/j.neurobiolaging.2008.03.024 18462836 source
May combine two claims.
PremisecitationRay et al. found 18 signalling proteins in blood plasma that can be used to classify blinded samples from Alzheimer's and control patients with close to 90% accuracy and to identify patients with mild cognitive impairment that progressed to AD 2-6 years later.
“Ray et al.[145] have found 18 signalling proteins in blood plasma that can be used to classify blinded samples from Alzheimer's and control patients with close to 90% accuracy and to identify patients with mild cognitive impairment that progressed to AD 2–6 years later.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [145] Ray S Britschgi M Herbert C Classification and prediction of clinical Alzheimer's diagnosis based on plasma signaling proteins Nat Med 2007 13 1359 62 17934472 source
May combine two claims.
Interpretationnone givenIn peripheral mononuclear cells of Alzheimer's disease patients, PKR can control the cell cycle and the inflammatory reaction.
“In the brain, this disturbance is associated with the neuronal death while in peripheral mononuclear cells of AD patients, PKR can control the cell cycle and the inflammatory reaction.”
Quote in the paperNot a substantial claim- Rests on an assumption: PKR controls the cell cycle, the proliferation and differentiation of cells.
May combine two claims.
PremisecitationIn brains of APPslPS1 KI mice, levels of phosphorylated PKR were significantly increased as early as 3 months of age, associated with intraneuronal amyloid peptide, before the massive neuronal death observed at 6 months.
“We can remember that the levels of phosphorylated PKR were significantly increased in brains of APPslPS1 KI mice as early as 3 months of age associated with intraneuronal amyloid peptide before the massive neuronal death observed at 6 months [97].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [97] Page G Rioux Bilan A Ingrand S Activated double-stranded RNA-dependent protein kinase and neuronal death in models of Alzheimer's disease Neuroscience 2006 139 1343 54 16581193 source
May combine two claims.
InterpretationcitationNF-κB could be under the control of PKR in Alzheimer's disease because NF-κB is activated in Alzheimer's disease.
“However, NF-κB could be under the control of PKR in AD because this factor is activated in AD [177, 178].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [177] Fontalba A Gutierrez O Llorca J Deficiency of CARD8 is associated with increased Alzheimer's disease risk in women Dement Geriatr Cogn Disord 2008 26 247 50 18841008 source
- cites [178] Paris D Patel N Quadros A Inhibition of Abeta production by NF-kappaB inhibitors Neurosci Lett 2007 415 11 6 17223266 source
May combine two claims.
InterpretationreasoningPKR may not be a biomarker of cognitive decline but rather an early biomarker of cell death.
“So, PKR may not be a biomarker of cognitive decline but rather an early biomarker of cell death.”
Quote in the paperSubstantial claim
The paper relies on this without support.
The molecular and cellular alterations measured in peripheral lymphocytes reflect the same disease processes occurring in the AD brain sufficiently to serve as biomarkers.
“The control of translation through PKR/eIF2a signalling pathway is altered in AD lymphocytes as it was observed in brains of AD patients [50, 95].”
“Thus, peripheral cell's biomarkers, easily accessible, could facilitate an early diagnosis or help following the severity of disease.”
The paper relies on this without support.
PKR activation is a cause, not merely a consequence, of the neurodegenerative cascade in AD.
“PKR seems to be the initiator of this deregulation which could be involved in the failure of the re-entry of neurons in cell cycle.”
“The inhibition of PKR activity may represent an effective therapeutic strategy in the treatment of AD.”
The paper relies on this without support.
The molecular link p53/Redd1/TSC2 operates in human AD brain as it does in cell models.
“p53, Redd1 and TSC2 can be molecular links between the up-regulation of PKR and the down-regulation of mTOR largely described in AD (Fig. 2).”
“In addition, we reported that PKR represents an initiator of deregulated translation via two consecutive targets p53 and Redd1 in AD lymphocytes [102].”
The paper relies on this without support.
PKR is a constitutive protein.
“However, PKR is a constitutive protein and all its physiological roles are yet unknown.”
The paper relies on this without support.
PKR controls the cell cycle, the proliferation and differentiation of cells.
“Besides its role in the antiviral defence mechanism of the host, PKR controls the cell cycle, the proliferation and differentiation of cells.”
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Self-citationTranslational research? Ribosome integrity and a new p53 tumor suppressor checkpoint
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Deficiency of CARD8 Is Associated with Increased Alzheimer’s Disease Risk in Women
Fontalba, A., Gutiérrez, O., Llorca, J., Mateo, I., Berciano, J., Fernández-Luna, J. L., & Combarros, O. (2008) · Dementia and Geriatric Cognitive Disorders · doi:10.1159/000160956 · Cited by 26 · see citing works
Increased phosphorylation of elongation factor 2 in Alzheimer's disease.
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Self-citationPeripheral p70S6k levels and emotional memory in patients with Alzheimer's disease
Paccalin, M., Khidir, F. A., Pain, S., Pluchon, C., Perrault-Pochat, M.-C., Gil, R., & Hugon, J. (2006) · Neuroscience Letters · doi:10.1016/j.neulet.2006.07.053 · Cited by 16 · see citing works
Self-citationProtein synthesis during LTP: linking synaptic activity to translation
Nguyen, P. (2002) · Trends in Neurosciences · doi:10.1016/s0166-2236(02)02166-5 · Cited by 15 · see citing works
A long trek down the pathways of cell death in Alzheimer's disease
Davies, P. (2006) · Journal of Alzheimer's Disease · doi:10.3233/jad-2006-9s329 · Cited by 7 · see citing works
Flagged first, then by citations
Research works printed but not linked: 4
- Hinnebusch AG, 2007, In translational control in biology and medicine, 225
- Ron D, 2007, In translational control in biology and medicine, 345
- Raught B, 2007, In translational control in biology and medicine, 369
- 10.1038/sj.mp.4002060 · DOI
Cited by
Sorted by citations
Bomfim, T. R., Forny‐Germano, L., Sathler, L. B., Brito‐Moreira, J., Houzel, J., Decker, H., Silverman, M. A., Kazi, H., Melo, H. M., McClean, P. L., et al. (2012) · Journal of Clinical Investigation · doi:10.1172/jci57256 · Cited by 830 · see citing works
“Other studies have shown that mTOR signaling is downregulated in cellular and animal models of AD (54, 58).”
Translational control in synaptic plasticity and cognitive dysfunction
Buffington, S. A., Huang, W., & Costa-Mattioli, M. (2014) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-071013-014100 · Cited by 348 · see citing works
“A uthor M anuscript A uthor M anuscript A uthor M anuscript A uthor M anuscript PKR-eIF2α signaling is also implicated in AD (Morel et al. 2009).”
BackgroundMammalian/mechanistic target of rapamycin (mTOR) complexes in neurodegeneration
Querfurth, H., & Lee, H.-K. (2021) · Molecular Neurodegeneration · doi:10.1186/s13024-021-00428-5 · Cited by 288 · see citing works
Host-Directed Therapeutics for Tuberculosis: Can We Harness the Host?
Hawn, T. R., Matheson, A. I., Maley, S. N., & Vandal, O. H. (2013) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00032-13 · Cited by 150 · see citing works
Cai, Z.-Y., Zhao, B., Li, K.-S., Zhang, L.-Q., Li, C., Quazi, S. H., & Tan, Y. (2012) · Journal of Neuroscience Research · doi:10.1002/jnr.23011 · Cited by 129 · see citing works
“The mTOR signaling pathway is downregulated in cellular and animal models of AD (Yoon et al., 2008; Morel et al., 2009a).”
BackgroundInfluentialZuo, L., Hemmelgarn, B. T., Chuang, C., & Best, T. M. (2015) · Oxidative Medicine and Cellular Longevity · doi:10.1155/2015/604658 · Cited by 118 · see citing works
“Double-stranded RNA dependent protein kinase (PKR) responds to cellular hardship in a proapoptotic manner by activating other stress signaling cascades including eIF2α [114].”
BackgroundFrançois, A., Terro, F., Janet, T., Bilan, A. R., Paccalin, M., & Page, G. (2013) · Journal of Neuroinflammation · doi:10.1186/1742-2094-10-151 · Cited by 110 · see citing works
“The p70S6K activation was increased by LPS and conversely decreased with Aβ42 as previously described [42,43].”
MethodSelf-citationThe impact of PKR activation: from neurodegeneration to cancer
Marchal, J. A., López, G., Perán, M., Comino, A., Delgado, J. R., Garcı́a-Garcı́a, J., Conde, V., Aranda, F. M., Rivas, C., Estéban, M., et al. (2014) · The FASEB Journal · doi:10.1096/fj.13-248294 · Cited by 104 · see citing works
“breakdown of translation in patients with AD (10, 59).”
Backgroundde la Monte, S. M., Re, E. B., Longato, L., & Tong, M. (2012) · Journal of Alzheimer s Disease · doi:10.3233/jad-2012-111728 · Cited by 80 · see citing works
Peripheral expression of MAPK pathways in Alzheimer’s and Parkinson’s diseases
Wang, S., Zhang, C., Sheng, X., Zhang, X., Wang, B., & Zhang, G. (2014) · Journal of Clinical Neuroscience · doi:10.1016/j.jocn.2013.08.017 · Cited by 72 · see citing works
ApoE ε4 is associated with eIF2α phosphorylation and impaired learning in young mice
Segev, Y., Michaelson, D. M., & Rosenblum, K. (2012) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2012.06.020 · Cited by 69 · see citing works
Fu, Z., Yang, Y., Song, J., Jiang, Q., Liu, Z.-C., Wang, Q., Zhu, L., Wang, J., & Tian, Q. (2010) · Journal of Alzheimer s Disease · doi:10.3233/jad-2010-100687 · Cited by 64 · see citing works
“ER stress markers, including elevated levels of BiP [13– 15], increased phosphorylation of protein kinase-like ER kinase (PERK) [16–18], and increased phosphorylation of eIF2 α [19–21], were observed in the brain of individuals with AD.”
Couturier, J., Paccalin, M., Morel, M., Terro, F., Milin, S., Pontcharraud, R., Fauconneau, B., & Page, G. (2011) · Journal of Neuroinflammation · doi:10.1186/1742-2094-8-72 · Cited by 61 · see citing works
“The IKK/NF- B signaling pathway is under the control of other kinases, in particular the double-stranded RNA-dependent protein kinase (PKR), well described in AD and associated with degenerating neurons and cognitive decline [12,25-30].”
BackgroundSelf-citationLee, H.-K., Kwon, B., Lemere, C. A., de la Monte, S., Itamura, K., Ha, A. Y., & Querfurth, H. W. (2017) · Journal of Alzheimer's Disease · doi:10.3233/jad-161029 · Cited by 57 · see citing works
“Finally, in the transgenic APPTg2576 model, decay of LTP was correlated with inhibited mTOR signaling (lowered p-p70S6K and p-4EBP1), similar to results in wild-type (wt) slices exposed to Aβ peptide or rapamycin [52, 53].”
Alzheimer’s Disease and Protein Kinases
Engin, A. B., & Engin, A. (2021) · Advances in experimental medicine and biology · doi:10.1007/978-3-030-49844-3_11 · Cited by 43 · see citing works
Improved Control of Tuberculosis and Activation of Macrophages in Mice Lacking Protein Kinase R
Wu, K., Koo, J. T., Jiang, X., Chen, R., Cohen, S. N., & Nathan, C. (2012) · PLoS ONE · doi:10.1371/journal.pone.0030512 · Cited by 41 · see citing works
“The candidacy of PKR as a therapeutic target has been suggested in a number of other diseases, including neurodegeneration, obesity, diabetes and influenza [26,35,36,37,38,39].”
Lopez‐Grancha, M., Bernardelli, P., Moindrot, N., Genet, E., Vincent, C., Roudières, V., Krick, A., Sabuco, J.-F., Machnik, D., Ibghi, D., et al. (2021) · Journal of Pharmacology and Experimental Therapeutics · doi:10.1124/jpet.121.000590 · Cited by 35 · see citing works
“Furthermore, pPKR is co-localized with phosphorylated eIF2α (peIF2α) in AD brain and in cultured neurons, Aβ oligomers (AβO) increase levels of peIF2α (Mamada et al., 2015; Chang et al., 2002b, Morel et al., 2009).”
BackgroundPataer, A., Özpolat, B., Shao, R., Cashman, N. R., Plotkin, S. S., Samuel, C. E., Lin, S. H., Kabil, N. N., Wang, J., Majidi, M., et al. (2019) · Oncogene · doi:10.1038/s41388-019-1010-4 · Cited by 34 · see citing works
Nallagatla, S. R., Jones, C. N., Ghosh, S., Sharma, S. D., Cameron, C. E., Spremulli, L. L., & Bevilacqua, P. C. (2013) · PLoS ONE · doi:10.1371/journal.pone.0057905 · Cited by 30 · see citing works
“For instance, PKR regulation has been linked to several diseases, including Huntington's, Parkinson's and Alzheimer's disease [17] [18] [19] [20] [21] .”
BackgroundFeng, X., Jiang, B., Zhai, S.-N., Liu, C., Wu, H., Zhu, B.-Q., Wei, M.-Y., Wei, J., Yang, L. C., & Chen, L. (2025) · Nature Biotechnology · doi:10.1038/s41587-025-02624-w · Cited by 40 · see citing works
“Multiple studies have reported abnormal PKR activation in both persons with AD and mouse models 22,45,46 .”
Dai, Y., Han, G., Xu, S., Yuan, Y., Zhao, C., & Ma, T. (2020) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2020.593659 · Cited by 30 · see citing works
“Sustained eIF2α phosphorylation and subsequent persistent repression of global protein synthesis, which result in memory impairments and neurodegeneration during chronic diseases such as AD, are observed in the brains of sporadic AD patients as well as in different AD transgenic mouse models (Chang et al., 2002; Ferre…”
BackgroundRyan, M. M., Guévremont, D., Luxmanan, C., Abraham, W. C., & Williams, J. M. (2015) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2015.01.012 · Cited by 28 · see citing works
Li, Y., Xiao, J., Tan, Y., et al. (2017) · Immunopharmacology and Immunotoxicology · doi:10.1080/08923973.2017.1303839 · Cited by 28 · see citing works
de la Monte, S. M. (2023) · Journal of Alzheimer s Disease · doi:10.3233/jad-230555 · Cited by 27 · see citing works
“Furthermore, evidence suggests that TSC2 may represent a molecular link between PKR and aberrant mTOR signaling in AD [306].”
Majd, R., Mayeli, M., & Rahmani, F. (2020) · Metabolic Brain Disease · doi:10.1007/s11011-020-00600-8 · Cited by 27 · see citing works
“Additionally, the glycogen synthase kinase-3 (GSK3) as the main phosphorylator of tau that mediates its aberrant aggregation as neurofibrillary tangles can prevent eIF2α complex formation, accentuating the ER stress and ER induced neuronal death (Morel et al. 2009).”
BackgroundInfluentialZhu, M., Liu, X., Wang, S., et al. (2016) · PubMed · Cited by 26 · see citing works
Bottley, A., Phillips, N. M., Webb, T. E., Willis, A. E., & Spriggs, K. A. (2010) · PLoS ONE · doi:10.1371/journal.pone.0013030 · Cited by 25 · see citing works
“Active PKR (and inhibited eIF2alpha) are increased in AD models and in patients’ brains, and correlate with decreased cognitive ability [41].”
BackgroundIdentification of new inhibitors of protein kinase R guided by statistical modeling
Bryk, R., Wu, K., Raimundo, B. C., et al. (2011) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2011.04.149 · Cited by 23 · see citing works
Metabolic determinants of leukocyte pathogenicity in neurological diseases
Runtsch, M. C., Ferrara, G. B., & Angiari, S. (2020) · Journal of Neurochemistry · doi:10.1111/jnc.15169 · Cited by 20 · see citing works
Zhang, Y., Chen, D., Zhang, M., Bian, J., Qian, S., & Kou, X. (2022) · Brain Research Bulletin · doi:10.1016/j.brainresbull.2022.01.007 · Cited by 15 · see citing works
Hashimoto, Y., Tokumoto, Y., Watanabe, T., et al. (2024) · Scientific Reports · doi:10.1038/s41598-024-59671-7 · Cited by 11 · see citing works
Ma, B., Wu, L., Lu, M., et al. (2013) · Molecular Medicine Reports · doi:10.3892/mmr.2013.1355 · Cited by 11 · see citing works
The mTOR Signaling Pathway in Neurodegenerative Diseases
Francois, A., Vérité, J., Bilan, A. R., Janet, T., Calon, F., Fauconneau, B., Paccalin, M., & Page, G. (2016) · Elsevier eBooks · doi:10.1016/b978-0-12-802733-2.00011-6 · Cited by 8 · see citing works
Self-citationDysregulated mTOR networks in experimental sporadic Alzheimer’s disease
de la Monte, S. M., & Tong, M. (2024) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2024.1432359 · Cited by 6 · see citing works
Up‐Regulation of PKR Signaling Pathway by Ethanol Displays an Age of Onset‐Dependent Relationship
Duncan, J. W., Johnson, S., Zhang, X., et al. (2016) · Alcoholism Clinical and Experimental Research · doi:10.1111/acer.13209 · Cited by 6 · see citing works
“PKR mediates neuronal cell death in several neurodegenerative disorders apart from viral infection, including Alzhiemer’s, Huntington’s and Parkinson’s diseases (Onuki et al., 2004; Peel, 2004; Bando et al., 2005; Morel et al., 2009).”
BackgroundLei, J., Song, S., Chen, Z., Shu, S., Liu, Q., & Hu, W. (2022) · Brain and Behavior · doi:10.1002/brb3.2722 · Cited by 6 · see citing works
“Dysregulation of PKR is associated with diseases such as cancer, design degenerative diseases, inflammation, and metabolic disorders (Morel et al., 2009).”
BackgroundRIPK1: A Promising Target for Intervention Neuroinflammation
Yan, F., Qiao, Y., Pan, S., Kang, A., Chen, H., & Bai, Y. (2025) · Journal of Neuroimmune Pharmacology · doi:10.1007/s11481-025-10208-3 · Cited by 6 · see citing works
“Furthermore, PKR expression is significantly increased in degenerating neurons stimulated with Aβ 1–42 , suggesting that PKR may play a pivotal role in AD-related brain injury and memory formation disorders(Hugon et al. 2017; Morel et al. 2009).”
Shirato, K., & Imaizumi, K. (2014) · International Journal of Inflammation · doi:10.1155/2014/292986 · Cited by 5 · see citing works
“Translation of mRNA into protein is initiated by physical interactions of the methionyl tRNA specialized for initiation (Met-tRNAi), several eukaryotic initiation factor (eIF) subunits, and the 40S ribosome [16].”
Ribosome Profiling for Biomarker Discovery
Sako, H., Suzuki, K., & Takeyama, H. (2013) · Japanese Journal of Complementary and Alternative Medicine · doi:10.1625/jcam.10.1 · Cited by 2 · see citing works
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“…this maladaptive persistent ISR activation extends to humans: ISR markers are elevated in the brain of individuals with neurological disorders (39, 77–81), and rare genetic variants in central components of the ISR that constitutively activate the pathway are associated with intellectual…”
Zhou, D. (2011) · IUScholarWorks (Indiana University) · doi:10.7912/c2/1822
An inhibitor of eIF2 activity in the sRNA pool of eukaryotic cells
Porter, D. L., & McCarthy, T. L. (2011) · Gene · doi:10.1016/j.gene.2011.05.017
“…myocardial, skeletal, and likely other diseases (Fogli and Boespflug-Tanguy, 2006; Balachandran and Barber, 2007; Chen, 2007; Tisdale, 2007; Costa-Mattioli et al., 2009; Jin et al., 2009; Morel et al., 2009; Pavitt and Proud, 2009; Boot-Handford and Briggs, 2010; Saito et al., 2011).”
BackgroundÁngel, M. A., & Chaves, G. (2016) · Anales de la Real Academia Nacional de Farmacia
Mammalian target of rapamycin complexes
Querfurth, H. W., & Lee, H. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-815868-5.00021-9
Zhu, P.-F., Lyu, Z., Wang, Q., Li, S., Wang, X., & Luo, A. (2026) · Pharmacological Research · doi:10.1016/j.phrs.2026.108228 · Cited by 2 · see citing works
Activation of mTOR: a culprit of Alzheimer&rsquo;s disease?
Cai, Z., Zhou, Y., Xiao, M., Yan, L.-J., & He, W. (2015) · Neuropsychiatric Disease and Treatment · doi:10.2147/ndt.s75717 · Cited by 161 · see citing works
“It has been evidenced that p53, regulated by TSC2, is a molecular link between the mTOR signaling pathways and RNA-activated protein kinase (PKR) as a center of cellular response to different stress signals and a critical target in AD.(185,186)”
Background
- Authors
- Morel, M., Couturier, J., Lafay‐Chebassier, C., Paccalin, M., & Page, G.
- Affiliations
- Université de Poitiers (FR)
- Inserm (FR)
- Corresponding author
- Page, Guylène
- Venue
- Journal of Cellular and Molecular Medicine
- Publisher
- Wiley
- Published
- 2009-08
- Volume
- 13
- Issue
- 8a
- Pages
- 1476-1488
- ISSN
- 1582-1838 (ISSN-L)
- 1582-4934
- PMC
- PMC3828860
- OpenAlex
- W1994047469
- Cited by
- 47
- References
- 179
- Citations by year
- 2026: 2 · 2025: 2 · 2024: 2 · 2023: 1 · 2022: 2 · 2021: 3 · 2020: 4 · 2019: 1 · 2017: 1 · 2016: 5 · 2015: 4 · 2014: 3 · 2013: 6 · 2012: 5
- FWCI
- 2.16
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Journal of Cellular and Molecular Medicine (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (submittedVersion)
- PubMed Central (submittedVersion)
- DIAL (Catholic University of Leuven) (submittedVersion, other-oa)
- Funders
- Centre Hospitalier Universitaire de Poitiers
- Topics
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Endoplasmic Reticulum Stress and Disease
- Keywords
- PKR, double-stranded RNA-dependent protein kinase, Alzheimer's disease, mTOR signaling, eIF2α, eIF2, eIF4E, translational regulation, amyloid-beta, neurofibrillary tangles, p53, Rpd3, TSC2, lymphocytes, cognitive impairment, biomarkers, neuronal cell death
- MeSH terms
- Alzheimer Disease, Animals, Humans, Protein Biosynthesis, Signal Transduction, Biomarkers, Protein Serine-Threonine Kinases, eIF-2 Kinase, Intracellular Signaling Peptides and Proteins, TOR Serine-Threonine Kinases
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-27.
Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-27.
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