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Whole-Genome Random Sequencing and Assembly of Haemophilus influenzae Rd

Fleischmann, Robert D., Adams, Mark D., White, Owen, Clayton, Rebecca A., Kirkness, Ewen F., Kerlavage, Anthony R., Bult, Carol J., Tomb, Jean-Francois, Dougherty, Brian A., Merrick, Joseph M., McKenney, Keith, Sutton, Granger, FitzHugh,, Will, Fields, Chris, Gocayne, Jeannine D., Scott, John, Shirley, Robert, Liu, Li-lng, Glodek, Anna, Kelley, Jenny M., Weidman, Janice F., Phillips, Cheryl A., Spriggs, Tracy, Hedblom, Eva, Cotton, Matthew D., Utterback, Teresa R., Hanna, Michael C., Nguyen, David T., Saudek, Deborah M., Brandon, Rhonda C., Fine, Leah D., Fritchman, Janice L., Fuhrmann, Joyce L., Geoghagen, N. S. M., Gnehm, Cheryl L., McDonald, Lisa A., Small, Keith V., Fraser, Claire M., Smith, Hamilton O., Venter, J. Craig·1995·Science

DOI 10.1126/science.7542800

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Abstract

An approach for genome analysis based on sequencing and assembly of unselected pieces of DNA from the whole chromosome has been applied to obtain the complete nucleotide sequence (1,830,137 base pairs) of the genome from the bacterium Haemophilus influenzae Rd. This approach eliminates the need for initial mapping efforts and is therefore applicable to the vast array of microbial species for which genome maps are unavailable. The H. influenzae Rd genome sequence (Genome Sequence DataBase accession number L42023) represents the only complete genome sequence from a free-living organism.

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Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669

Show all 1 references

Initial sequencing and analysis of the human genome
International Human Genome Sequencing Consortium, Whitehead Institute for Biomedical Research, C. F. G. R., Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., et al. (2001) · Nature · doi:10.1038/35057062 · Cited by 24,216
The sequence of the human genome
Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G., Smith, H. O., Yandell, M., Evans, C. A., Holt, R. A., et al. (2001) · Science · doi:10.1126/science.1058040 · Cited by 13,909
Self-citation
KEGG for taxonomy-based analysis of pathways and genomes
Kanehisa, M., Furumichi, M., Sato, Y., Kawashima, M., & Ishiguro-Watanabe, M. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkac963 · Cited by 5,833
Finishing the euchromatic sequence of the human genome
International Human Genome Sequencing Consortium (2004) · Nature · doi:10.1038/nature03001 · Cited by 4,971
The complete genome sequence of the gram-positive bacterium Bacillus subtilis.
Kunst, F., Ogasawara, N., Moszer, I., Albertini, A. M., Alloni, G., Azevedo, V., Bertero, M. G., Bessières, P., Bolotin, A., Borchert, S., et al. (1997) · Nature · doi:10.1038/36786 · Cited by 3,679
The complete genome sequence of the gastric pathogen Helicobacter pylori
Tomb, J.-F., White, O., Kerlavage, A. R., Clayton, R. A., Sutton, G. G., Fleischmann, R. D., Ketchum, K. A., Klenk, H. P., Gill, S., Dougherty, B. A., et al. (1997) · Nature · doi:10.1038/41483 · Cited by 3,529
Self-citation
Towards complete and error-free genome assemblies of all vertebrate species
Rhie, A., McCarthy, S. A., Fedrigo, O., Damas, J., Formenti, G., Koren, S., Uliano-Silva, M., Chow, W., Fungtammasan, A., Kim, J., et al. (2021) · Nature · doi:10.1038/s41586-021-03451-0 · Cited by 3,097
Towards complete and error-free genome assemblies of all vertebrate species
Rhie, A., McCarthy, S. A., Fedrigo, O., Damas, J., Formenti, G., Koren, S., Uliano-Silva, M., Chow, W., Fungtammasan, A., Gedman, G. L., et al. (2020) · doi:10.1101/2020.05.22.110833 · Cited by 3,097
Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome
Gibson, D. G., Glass, J. I., Lartigue, C., Noskov, V. N., Chuang, R.-Y., Algire, M. A., Benders, G. A., Montague, M. G., Ma, L., Moodie, M. M., et al. (2010) · Science · doi:10.1126/science.1190719 · Cited by 2,638
Self-citation
The Minimal Gene Complement of Mycoplasma genitalium
Fraser, C. M., Gocayne, J. D., White, O., Adams, M. D., Clayton, R. A., Fleischmann, R. D., Bult, C. J., Kerlavage, A. R., Sutton, G., Kelley, J. M., et al. (1995) · Science · doi:10.1126/science.270.5235.397 · Cited by 2,545
Self-citation
A new view of the tree of life
Hug, L. A., Baker, B. J., Anantharaman, K., Brown, C. T., Probst, A. J., Castelle, C. J., Butterfield, C. N., Hernsdorf, A. W., Amano, Y., Ise, K., et al. (2016) · Nature Microbiology · doi:10.1038/nmicrobiol.2016.48 · Cited by 2,039
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium (2007) · Nature · doi:10.1038/nature06341 · Cited by 2,010
Molecular Biology and Pathogenicity of Mycoplasmas
Razin, S., Yogev, D., & Naot, Y. (1998) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.62.4.1094-1156.1998 · Cited by 1,930
Identification of genes that are associated with DNA repeats in prokaryotes
Jansen, R., Embden, J. D. A. V., Gaastra, W., & Schouls, L. M. (2002) · Molecular Microbiology · doi:10.1046/j.1365-2958.2002.02839.x · Cited by 1,802
Comparative Genomics of the Eukaryotes
Rubin, G. M., Yandell, M. D., Wortman, J. R., Gabor, G. L., Miklos, Nelson, C. R., Hariharan, I. K., Fortini, M. E., Li, P. W., Apweiler, R., et al. (2000) · Science · doi:10.1126/science.287.5461.2204 · Cited by 1,698
Self-citation
The genome sequence of Rickettsia prowazekii and the origin of mitochondria
Andersson, S. G. E., Zomorodipour, A., Andersson, J. O., Sicheritz-Pontén, T., Alsmark, U. C. M., Podowski, R. M., Näslund, A. K., Eriksson, A.-S., Winkler, H. H., & Kurland, C. G. (1998) · Nature · doi:10.1038/24094 · Cited by 1,697
Design and synthesis of a minimal bacterial genome
Hutchison, C. A., Chuang, R.-Y., Noskov, V. N., Assad-Garcia, N., Deerinck, T. J., Ellisman, M. H., Gill, J., Kannan, K., Karas, B. J., Ma, L., et al. (2016) · Science · doi:10.1126/science.aad6253 · Cited by 1,500
Self-citation
Complete genome sequence of Lactobacillus plantarum WCFS1
Kleerebezem, M., Boekhorst, J., van Kranenburg, R., Molenaar, D., Kuipers, O. P., Leer, R., Tarchini, R., Peters, S. A., Sandbrink, H. M., Fiers, M. W. E. J., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0337704100 · Cited by 1,472
An Eulerian path approach to DNA fragment assembly
Pevzner, P. A., Tang, H., & Waterman, M. S. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.171285098 · Cited by 1,352
Orthologs, Paralogs, and Evolutionary Genomics
Koonin, E. V. (2005) · Annual Review of Genetics · doi:10.1146/annurev.genet.39.073003.114725 · Cited by 1,323
Fast algorithms for large-scale genome alignment and comparison
Delcher, A. L. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.11.2478 · Cited by 1,036
Prebiotic Systems Chemistry: New Perspectives for the Origins of Life
Ruiz-Mirazo, K., Briones, C., & de la Escosura, A. (2014) · Chemical Reviews · doi:10.1021/cr2004844 · Cited by 930
A minimal gene set for cellular life derived by comparison of complete bacterial genomes
Mushegian, A. R., & Koonin, E. V. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.19.10268 · Cited by 916
Stress Physiology of Lactic Acid Bacteria.
Papadimitriou, K., Alegría, Á., Bron, P. A., de Angelis, M., Gobbetti, M., Kleerebezem, M., Lemos, J. A., Linares, D. M., Ross, P., Stanton, C., et al. (2016) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00076-15 · Cited by 914
Alignment of whole genomes
Delcher, A. L., Kasif, S., Fleischmann, R. D., Peterson, J., White, O., & Salzberg, S. L. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.11.2369 · Cited by 893
Self-citation
Discoveries of Nicotinamide Riboside as a Nutrient and Conserved NRK Genes Establish a Preiss-Handler Independent Route to NAD+ in Fungi and Humans
Bieganowski, P., & Brenner, C. (2004) · Cell · doi:10.1016/s0092-8674(04)00416-7 · Cited by 750
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
Roberts, R. J. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg274 · Cited by 755
Short-sequence DNA repeats in prokaryotic genomes
van Belkum, A., Scherer, S., van Alphen, L., & Verbrugh, H. (1998) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.62.2.275-293.1998 · Cited by 737
How to apply de Bruijn graphs to genome assembly
Compeau, P. E. C., Pevzner, P. A., & Tesler, G. (2011) · Nature Biotechnology · doi:10.1038/nbt.2023 · Cited by 673
Comparative genomics, minimal gene-sets and the last universal common ancestor
Koonin, E. V. (2003) · Nature Reviews Microbiology · doi:10.1038/nrmicro751 · Cited by 661
An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
Lang, B. F., Burger, G., O'Kelly, C. J., Cedergren, R., Golding, G. B., Lemieux, C., Sankoff, D., Turmel, M., & Gray, M. W. (1997) · Nature · doi:10.1038/387493a0 · Cited by 620
Hydrolysis and amino acid composition analysis of proteins
Fountoulakis, M., & Lahm, H.-W. (1998) · Journal of Chromatography A · doi:10.1016/s0021-9673(98)00721-3 · Cited by 606
Determination of the Core of a Minimal Bacterial Gene Set
Gil, R., Silva, F. J., Peretó, J., & Moya, A. (2004) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.68.3.518-537.2004 · Cited by 573
History of CRISPR-Cas from Encounter with a Mysterious Repeated Sequence to Genome Editing Technology
Ishino, Y., Krupovic, M., & Forterre, P. (2018) · Journal of Bacteriology · doi:10.1128/jb.00580-17 · Cited by 558
Transmembrane Signaling across the Ligand-Gated FhuA Receptor
Locher, K. P., Rees, B., Koebnik, R., Mitschler, A., Moulinier, L., Rosenbusch, J. P., & Moras, D. (1998) · Cell · doi:10.1016/s0092-8674(00)81700-6 · Cited by 540
Bacterial respiration: a flexible process for a changing environment 1999 Fleming Lecture (Delivered at the 144th meeting of the Society for General Microbiology, 8 September 1999)
Richardson, D. J. (2000) · Microbiology · doi:10.1099/00221287-146-3-551 · Cited by 544
Behavior of restriction–modification systems as selfish mobile elements and their impact on genome evolution
Kobayashi, I. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.18.3742 · Cited by 513
Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus
Fedorova, N. D., Khaldi, N., Joardar, V. S., Maiti, R., Amedeo, P., Anderson, M. J., Crabtree, J., Silva, J. C., Badger, J. H., Albarraq, A., et al. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000046 · Cited by 508
Self-citation
What is Bioinformatics? A Proposed Definition and Overview of the Field
Luscombe, N. M., Greenbaum, D., & Gerstein, M. (2001) · Methods of Information in Medicine · doi:10.1055/s-0038-1634431 · Cited by 453
Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation
Moxon, R., Bayliss, C., & Hood, D. (2006) · Annual Review of Genetics · doi:10.1146/annurev.genet.40.110405.090442 · Cited by 438
Enzymology and bioenergetics of respiratory nitrite ammonification
Simon, J. (2002) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2002.tb00616.x · Cited by 403
Assessing the gene space in draft genomes
Parra, G., Bradnam, K., Ning, Z., Keane, T., & Korf, I. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn916 · Cited by 395
Convergent evolution of metabolic roles in bacterial co-symbionts of insects
McCutcheon, J. P., McDonald, B. R., & Moran, N. A. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0906424106 · Cited by 384
Bacterial tellurite resistance
Taylor, D. E. (1999) · Trends in Microbiology · doi:10.1016/s0966-842x(99)01454-7 · Cited by 365
Cloning and sequencing of four new mammalian monocarboxylate transporter (MCT) homologues confirms the existence of a transporter family with an ancient past
PRICE, T. N., JACKSON, N. V., & HALESTRAP, P. A. (1998) · Biochemical Journal · doi:10.1042/bj3290321 · Cited by 361
Iron Storage in Bacteria
Andrews, S. C. (1998) · Advances in Microbial Physiology · doi:10.1016/s0065-2911(08)60134-4 · Cited by 353
Antibiotic Resistance Caused by Gram‐Negative Multidrug Efflux Pumps
Nikaido, H. (1998) · Clinical Infectious Diseases · doi:10.1086/514920 · Cited by 348
A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis
Picotti, P., Clément-Ziza, M., Lam, H., Campbell, D. S., Schmidt, A., Deutsch, E. W., Röst, H., Sun, Z., Rinner, O., Reiter, L., et al. (2013) · Nature · doi:10.1038/nature11835 · Cited by 318
Evolutionary Origins of Genomic Repertoires in Bacteria
Lerat, E., Daubin, V., Ochman, H., & Moran, N. A. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030130 · Cited by 338
Historical perspective, development and applications of next-generation sequencing in plant virology
Barba, M., Czosnek, H., & Hadidi, A. (2014) · Viruses · doi:10.3390/v6010106 · Cited by 317
Next-generation genome annotation: we still struggle to get it right
Salzberg, S. L. (2019) · Genome Biology · doi:10.1186/s13059-019-1715-2 · Cited by 327
Shared and distinct mechanisms of iron acquisition by bacterial and fungal pathogens of humans
Caza, M., & Kronstad, J. W. (2013) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2013.00080 · Cited by 306
Human Whole-Genome Shotgun Sequencing
Weber, J. L., & Myers, E. W. (1997) · Genome Research · doi:10.1101/gr.7.5.401 · Cited by 311
Bacterial transferrin and lactoferrin receptors
Gray-Owen, S. D., & Schyvers, A. B. (1996) · Trends in Microbiology · doi:10.1016/0966-842x(96)10025-1 · Cited by 299
Unique amino acid composition of proteins in halophilic bacteria
Fukuchi, S., Yoshimune, K., Wakayama, M., Moriguchi, M., & Nishikawa, K. (2003) · Journal of Molecular Biology · doi:10.1016/s0022-2836(03)00150-5 · Cited by 277
Iron–sulfur proteins with nonredox functions
Flint, D. H., & Allen, R. M. (1996) · Chemical Reviews · doi:10.1021/cr950041r · Cited by 280
Bioinformatics
Bayat, A. (2002) · BMJ · doi:10.1136/bmj.324.7344.1018 · Cited by 278
The Yfe system of Yersinia pestis transports iron and manganese and is required for full virulence of plague
Bearden, S. W., & Perry, R. D. (1999) · Molecular Microbiology · doi:10.1046/j.1365-2958.1999.01360.x · Cited by 254
Extremophiles and the Search for Extraterrestrial Life
Cavicchioli, R. (2002) · Astrobiology · doi:10.1089/153110702762027862 · Cited by 232
Microbial NAD Metabolism: Lessons from Comparative Genomics
Gazzaniga, F., Stebbins, R., Chang, S. Z., McPeek, M. A., & Brenner, C. (2009) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00042-08 · Cited by 230
The Phusion Assembler
Mullikin, J. C., & Ning, Z. (2003) · Genome Research · doi:10.1101/gr.731003 · Cited by 222
Black Queen evolution: the role of leakiness in structuring microbial communities
Morris, J. J. (2015) · Trends in Genetics · doi:10.1016/j.tig.2015.05.004 · Cited by 207
Essential metabolism for a minimal cell
Breuer, M., Earnest, E. E., Merryman, C., Wise, K. S., Sun, L., Lynott, M. R., Hutchison, C. A., Smith, H. O., Lapek, J. D., Gonzalez, D. J., et al. (2019) · eLife · doi:10.7554/elife.36842 · Cited by 190
Self-citation
Tracing isolates of bacterial species by multilocus variable number of tandem repeat analysis (MLVA)
Van Belkum, A. (2007) · FEMS Immunology & Medical Microbiology · doi:10.1111/j.1574-695x.2006.00173.x · Cited by 203
Characterization of a novel Vibrio pathogenicity island (VPI-2) encoding neuraminidase (nanH) among toxigenic Vibrio cholerae isolates
Jermyn, W. S., & Boyd, E. F. (2002) · Microbiology · doi:10.1099/00221287-148-11-3681 · Cited by 198
Distribution of Protein Folds in the Three Superkingdoms of Life
Wolf, Y. I., Brenner, S. E., Bash, P. A., & Koonin, E. V. (1999) · Genome Research · doi:10.1101/gr.9.1.17 · Cited by 183
Suppressors of Superoxide Dismutase (SOD1) Deficiency in Saccharomyces cerevisiae
Strain, J., Lorenz, C. R., Bode, J., Garland, S., Smolen, G. A., Ta, D. T., Vickery, L. E., & Culotta, V. C. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.47.31138 · Cited by 181
Salmonella typhimurium Encodes a Putative Iron Transport System within the Centisome 63 Pathogenicity Island
Zhou, D., Hardt, W.-D., & Galán, J. E. (1999) · Infection and Immunity · doi:10.1128/iai.67.4.1974-1981.1999 · Cited by 182
Modular Assembly of Genes and the Evolution of New Functions
Patthy, L. (2003) · Genetica · doi:10.1023/a:1024182432483 · Cited by 166
Nitrate reduction in the periplasm of gram-negative bacteria
Potter, L., Angove, H., Richardson, D., & Cole, J. (2001) · Advances in Microbial Physiology · doi:10.1016/s0065-2911(01)45002-8 · Cited by 152
Avoidance of palindromic words in bacterial and archaeal genomes: a close connection with restriction enzymes
Gelfand, M. S., & Koonin, E. V. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.12.2430 · Cited by 134
Importance of systems biology in engineering microbes for biofuel production
Mukhopadhyay, A., Redding, A. M., Rutherford, B. J., & Keasling, J. D. (2008) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2008.05.003 · Cited by 129
Two Yeast Homologs of ECA39, a Target for c-Myc Regulation, Code for Cytosolic and Mitochondrial Branched-chain Amino Acid Aminotransferases
Eden, A., Simchen, G., & Benvenisty, N. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.34.20242 · Cited by 116
An ABC Transporter System of Yersinia pestis Allows Utilization of Chelated Iron by Escherichia coli SAB11
Bearden, S. W., Staggs, T. M., & Perry, R. D. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.5.1135-1147.1998 · Cited by 116
Preprotein transfer to the Escherichia coli translocase requires the co‐operative binding of SecB and the signal sequence to SecA
Fekkes, P., De Wit, J. G., Van Der Wolk, J. P. W., Kimsey, H. H., Kumamoto, C. A., & Driessen, A. J. M. (1998) · Molecular Microbiology · doi:10.1046/j.1365-2958.1998.00997.x · Cited by 111
Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences
Bryant, J., Chewapreecha, C., & Bentley, S. D. (2012) · Future Microbiology · doi:10.2217/fmb.12.108 · Cited by 98
Regulation of Pseudomonas aeruginosa hemF and hemN by the dual action of the redox response regulators Anr and Dnr
Rompf, A., Hungerer, C., Hoffmann, T., Lindenmeyer, M., Römling, U., Groß, U., Doss, M. O., Arai, H., Igarashi, Y., & Jahn, D. (1998) · Molecular Microbiology · doi:10.1046/j.1365-2958.1998.00980.x · Cited by 92
The high-resolution crystal structure of periplasmic Haemophilus influenzae NAD nucleotidase reveals a novel enzymatic function of human CD73 related to NAD metabolism
Garavaglia, S., Bruzzone, S., Cassani, C., Canella, L., Allegrone, G., Sturla, L., Mannino, E., Millo, E., De Flora, A., & Rizzi, M. (2012) · Biochemical Journal · doi:10.1042/bj20111263 · Cited by 94
Congruence of Morphological and Molecular Phylogenies
Pisani, D., Benton, M. J., & Wilkinson, M. (2007) · Acta Biotheoretica · doi:10.1007/s10441-007-9015-8 · Cited by 93
Microbial genomes and vaccine design: refinements to the classical reverse vaccinology approach
Mora, M., Donati, C., Medini, D., Covacci, A., & Rappuoli, R. (2006) · Current Opinion in Microbiology · doi:10.1016/j.mib.2006.07.003 · Cited by 92
Binding of Heme-Hemopexin Complexes by Soluble HxuA Protein Allows Utilization of This Complexed Heme by Haemophilus influenzae
Cope, L. D., Thomas, S. E., Hrkal, Z., & Hansen, E. J. (1998) · Infection and Immunity · doi:10.1128/iai.66.9.4511-4516.1998 · Cited by 80
Genome-wide annotation, identification, and global transcriptomic analysis of regulatory or small RNA gene expression in Staphylococcus aureus
Carroll, R. K., Weiss, A., Broach, W. H., Wiemels, R. E., Mogen, A. B., Rice, K. C., & Shaw, L. N. (2016) · mBio · doi:10.1128/mbio.01990-15 · Cited by 76
Effect of minCD on FtsZ Ring Position and Polar Septation in Bacillus subtilis
Levin, P. A., Shim, J. J., & Grossman, A. D. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.22.6048-6051.1998 · Cited by 78
HutZ Is Required for Efficient Heme Utilization in Vibrio cholerae
Wyckoff, E. E., Schmitt, M., Wilks, A., & Payne, S. M. (2004) · Journal of Bacteriology · doi:10.1128/jb.186.13.4142-4151.2004 · Cited by 78
Methanogen genomics to discover targets for methane mitigation technologies and options for alternative H2 utilisation in the rumen.
Attwood, G., & McSweeney, C. (2008) · Australian Journal of Experimental Agriculture · doi:10.1071/ea07203 · Cited by 72
Adaptive laboratory evolution of cadmium tolerance in Synechocystis sp. PCC 6803
Xu, C., Sun, T., Li, S., Chen, L., & Zhang, W. (2018) · Biotechnology for Biofuels · doi:10.1186/s13068-018-1205-x · Cited by 59
Genome update: the 1000th genome-a cautionary tale
Lagesen, K., Ussery, D. W., & Wassenaar, T. M. (2010) · Microbiology · doi:10.1099/mic.0.038257-0 · Cited by 62
The iron/heme regulated genes of Haemophilus influenzae: comparative transcriptional profiling as a tool to define the species core modulon
Whitby, P. W., Seale, T. W., VanWagoner, T. M., Morton, D. J., & Stull, T. L. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-6 · Cited by 57
Periplasmic nitrate-reducing system of the phototrophic bacterium Rhodobacter sphaeroides DSM 158: transcriptional and mutational analysis of the napKEFDABC gene cluster
REYES, F., GAVIRA, M., CASTILLO, F., & MORENO-VIVIÁN, C. (1998) · Biochemical Journal · doi:10.1042/bj3310897 · Cited by 56
The haem-haemopexin utilization gene cluster (hxuCBA) as a virulence factor of Haemophilus influenzae
Morton, D. J., Seale, T. W., Madore, L. L., VanWagoner, T. M., Whitby, P. W., & Stull, T. L. (2007) · Microbiology · doi:10.1099/mic.0.2006/000190-0 · Cited by 54
The heme-binding protein (HbpA) of Haemophilus influenzae as a virulence determinant
Morton, D. J., Seale, T. W., Bakaletz, L. O., Jurcisek, J. A., Smith, A., VanWagoner, T. M., Whitby, P. W., & Stull, T. L. (2009) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2009.03.004 · Cited by 53
The heme-binding lipoprotein (HbpA) of Haemophilus influenzae: Role in heme utilization
Morton, D. J., Madore, L. L., Smith, A., VanWagoner, T. M., Seale, T. W., Whitby, P. W., & Stull, T. L. (2005) · FEMS Microbiology Letters · doi:10.1016/j.femsle.2005.09.016 · Cited by 51
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Drew, J. C., & Triplett, E. W. (2008) · Journal of Microbiology & Biology Education · doi:10.1128/jmbe.v9.89 · Cited by 51
Hemin-dependent growth and hemin binding of Bartonella henselae
Sander, A., Kretzer, S., Bredt, W., Oberle, K., & Bereswill, S. (2000) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2000.tb09205.x · Cited by 50
The 1.25 Å Resolution Structure of the Diheme NapB Subunit of Soluble Nitrate Reductase Reveals a Novel Cytochrome c Fold with a Stacked Heme Arrangement,
Brigé, A., Leys, D., Meyer, T. E., Cusanovich, M. A., & Van Beeumen, J. J. (2002) · Biochemistry · doi:10.1021/bi012144b · Cited by 47
Multiple genome alignment in the telomere-to-telomere assembly era
Kille, B., Balaji, A., Sedlazeck, F. J., Nute, M., & Treangen, T. J. (2022) · Genome Biology · doi:10.1186/s13059-022-02735-6 · Cited by 47
Identification of New Genetic Regions More Prevalent in Nontypeable Haemophilus influenzae Otitis Media Strains than in Throat Strains
Xie, J., Juliao, P. C., Gilsdorf, J. R., Ghosh, D., Patel, M., & Marrs, C. F. (2006) · Journal of Clinical Microbiology · doi:10.1128/jcm.01331-06 · Cited by 44
Identification of two domains and distal histidine ligands to the four haems in the bacterial c-type cytochrome NapC; the prototype connector between quinol/quinone and periplasmic oxido-reductases
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Authors: Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bult, C. J., Tomb, J.-F., Dougherty, B. A., Merrick, J. M., McKenney, K., Sutton, G., FitzHugh, Fields, C., Gocayne, J. D., Scott, J., Shirley, R., Liu, L.-L., Glodek, A., Kelley, J. M., Weidman, J. F., Phillips, C. A., Spriggs, T., Hedblom, E., Cotton, M. D., Utterback, T. R., Hanna, M. C., Nguyen, D. T., Saudek, D. M., Brandon, R. C., Fine, L. D., Fritchman, J. L., Fuhrmann, J. L., Geoghagen, N. S. M., Gnehm, C. L., McDonald, L. A., Small, K. V., Fraser, C. M., Smith, H. O., & Venter, J. C.
Venue: Science
Publisher: American Association for the Advancement of Science (AAAS)
Published: 1995-07-28
Volume: 269
Issue: 5223
Pages: 496-512
ISSN: 0036-8075 (ISSN-L)
1095-9203
DOI: 10.1126/science.7542800
OpenAlex: W1971403296
Cited by: 5,654
References: 1
FWCI: 160.93
Type: journal article
Language: en
Open access: closed

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Whole-Genome Random Sequencing and Assembly of Haemophilus influenzae Rd

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