Dietary lipids, gut microbiota and lipid metabolism
Open accessAbstract
The gut microbiota is a central regulator of host metabolism. The composition and function of the gut microbiota is dynamic and affected by diet properties such as the amount and composition of lipids. Hence, dietary lipids may influence host physiology through interaction with the gut microbiota. Lipids affect the gut microbiota both as substrates for bacterial metabolic processes, and by inhibiting bacterial growth by toxic influence. The gut microbiota has been shown to affect lipid metabolism and lipid levels in blood and tissues, both in mice and humans. Furthermore, diseases linked to dyslipidemia, such as non-alcoholic liver disease and atherosclerosis, are associated with changes in gut microbiota profile. The influence of the gut microbiota on host lipid metabolism may be mediated through metabolites produced by the gut microbiota such as short-chain fatty acids, secondary bile acids and trimethylamine and by pro-inflammatory bacterially derived factors such as lipopolysaccharide. Here we will review the association between gut microbiota, dietary lipids and lipid metabolism
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Written from the paper’s full text.
TL;DR
This review synthesizes evidence that dietary lipids shape gut microbiota composition and function, while microbiota-derived metabolites influence host lipid metabolism and dyslipidemia-related disease. It highlights mechanistic mouse studies and human associations, but notes that specific fatty acid roles and long-term therapeutic benefits remain uncertain.
Key findings
- Dietary fat amount and source alter gut microbiota in mice: lard-rich saturated fat versus fish oil n-3 PUFA was associated with lower phylogenetic diversity and lower *Akkermansia muciniphila*, *Lactobacillus*, and *Bifidobacterium*, plus reduced insulin sensitivity and increased white adipose tissue inflammation via TLR4; milk fat increased *Bilophila wadsworthia* and colitis in susceptible mice.
- The microbiota affects host lipid handling: germ-free mice are protected against diet-induced obesity, and the microbiota increases circulating triglycerides, HDL, and total cholesterol in mice on a high-fat diet. In humans, low microbial gene richness is associated with higher total serum cholesterol and triglycerides and lower HDL; Fu et al. attributed 6% of serum triglyceride variance and 4% of HDL variance to gut microbiota composition.
- Mechanisms include short-chain fatty acids signaling through GPR43/GPR41, bile acids acting via FXR/TGR5, LPS/TLR4 linking metabolic endotoxemia to dyslipidemia, NAFLD, and atherosclerosis, and TMA/TMAO associated with cardiovascular risk and atherosclerosis, though the TMAO role remains debated.
- Clinical interventions show mixed evidence: a meta-analysis of 11 minor trials using fermented milk/probiotics reported beneficial serum lipid effects; a *Lactobacillus* meta-analysis improved total cholesterol and LDL but not triglycerides or HDL; a meta-analysis of 25 trials using pre-, pro-, or symbiotics reduced AST and ALT in NAFLD; obeticholic acid improved NASH after 72 weeks but raised serum LDL.
Methods
- Narrative review; no primary experimental data are reported.
- Synthesizes mechanistic mouse and gnotobiotic studies plus human observational, metagenomic, and clinical intervention studies on dietary lipids, gut microbiota, and lipid metabolism.
- Main analysis is qualitative synthesis of cited literature; no systematic search strategy or formal meta-analysis is described.
Limitations
- Stated: the role of specific fatty acids is not known; how lipids combine with other nutrients such as dietary fibers to affect the microbiota remains to be investigated; the diet–microbiota–dyslipidemia association needs study in large human cohorts; individual microbiota differences likely require patient stratification and individual-based therapies.
- Stated: clinical studies targeting the microbiota for dyslipidemia and NAFLD are heterogeneous, with small cohorts and short intervention periods, so long-term benefits remain uncertain; prevention of atherosclerosis by microbiota modulation has not been studied in humans, and mouse data are conflicting.
- Evident: as a narrative review, it lacks a systematic search and risk-of-bias assessment, and conclusions rely on studies with varying designs and inconsistent human findings.
Model-written summary. Check it against the paper before relying on it.
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0 of 49 cited sources checked · 0 supported · 0 flagged
- Premisecitation
The gut microbiota is a central regulator of host metabolism.
“The gut microbiota is a central regulator of host metabolism.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [1] Sonnenburg JL, Backhed F. Diet-microbiota interactions as moderators of human metabolism. Nature. 2016;535(7610):56–64. https://doi.org/10.1038/nature18846 . source
Not checked in the free run.
- Premisenone given
Microbial imbalance, sometimes termed dysbiosis, is associated with metabolic perturbations.
“Microbial imbalance, sometimes termed dysbiosis, is associated with metabolic perturbations, and several studies have demonstrated a causal relationship between microbial function and metabolic perturbations.”
Quote in the paperSubstantial claim - Premisecitation
Diseases linked to dyslipidemia, such as non-alcoholic liver disease and atherosclerosis, are associated with changes in gut microbiota profile.
“Furthermore, diseases linked to dyslipidemia, such as non-alcoholic liver disease and atherosclerosis, are associated with changes in gut microbiota profile.”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [40] Koren O, Spor A, Felin J, Fak F, Stombaugh J, Tremaroli V, et al. Human oral, gut, and plaque microbiota in patients with atherosclerosis. Proc Natl Acad Sci U S A. 2011;108(Suppl 1):4592–8. https://doi.org/10.1073/pnas.1011383107 . source
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- Premisenone given
The composition and function of the gut microbiota is dynamic and affected by diet properties such as the amount and composition of lipids.
“The composition and function of the gut microbiota is dynamic and affected by diet properties such as the amount and composition of lipids.”
Quote in the paperSubstantial claim - Premisecitation
The gut microbiota affects lipid metabolism and lipid levels in blood and tissues in mice and humans.
“The gut microbiota has been shown to affect lipid metabolism and lipid levels in blood and tissues, both in mice and humans.”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [29] Backhed F, Manchester JK, Semenkovich CF, Gordon JI. Mechanisms underlying the resistance to diet-induced obesity in germ-free mice. Proc Natl Acad Sci U S A. 2007;104(3):979–84. https://doi.org/10.1073/pnas.0605374104 . source
Not checked in the free run.
- cites [31] Rabot S, Membrez M, Bruneau A, Gerard P, Harach T, Moser M, et al. Germ-free C57BL/6J mice are resistant to high-fat-diet-induced insulin resistance and have altered cholesterol metabolism. FASEB J. 2010:4948–59. https://doi.org/10.1096/fj.10-164921 . source
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- cites [37] Cotillard A, Kennedy SP, Kong LC, Prifti E, Pons N, Le Chatelier E, et al. Dietary intervention impact on gut microbial gene richness. Nature. 2013;500(7464):585–8. https://doi.org/10.1038/nature12480 . source
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- Premisecitation
Transplantation of fecal microbiota from patients with obesity, steatosis or type 2 diabetes can partly reproduce the donor's metabolic phenotype in mouse recipients.
“transplantation of the fecal microbiota from patients with obesity, steatosis or type 2 diabetes can partly reproduce the donor’s metabolic phenotype in mouse recipients [4–7].”
Quote in the paperNot a substantial claim0 of 4 sources checked- cites [4] Ridaura VK, Faith JJ, Rey FE, Cheng J, Duncan AE, Kau AL, et al. Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science. 2013;341(6150):1241214. https://doi.org/10.1126/science.1241214 . source
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- cites [5] Zhou D, Pan Q, Shen F, Cao HX, Ding WJ, Chen YW, et al. Total fecal microbiota transplantation alleviates high-fat diet-induced steatohepatitis in mice via beneficial regulation of gut microbiota. Sci Rep. 2017;7(1):1529. https://doi.org/10.1038/s41598-017-01751-y . source
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- cites [6] Tremaroli V, Karlsson F, Werling M, Stahlman M, Kovatcheva-Datchary P, Olbers T, et al. Roux-en-Y Gastric Bypass and Vertical Banded Gastroplasty Induce Long-Term Changes on the Human Gut Microbiome Contributing to Fat Mass Regulation. Cell Metab. 2015;22(2):228–38. https://doi.org/10.1016/j.cmet.2015.07.009 . source
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- cites [7] Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature. 2006;444(7122):1027–31. https://doi.org/10.1038/nature05414 . source
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- Interpretationnone given
The influence of the gut microbiota on host lipid metabolism may be mediated through metabolites produced by the gut microbiota such as short-chain fatty acids, secondary bile acids and trimethylamine and by pro-inflammatory bacterially derived factors such as lipopolysaccharide.
“The influence of the gut microbiota on host lipid metabolism may be mediated through metabolites produced by the gut microbiota such as short-chain fatty acids, secondary bile acids and trimethylamine and by pro-inflammatory bacterially derived factors such as lipopolysaccharide.”
Quote in the paperSubstantial claim - Interpretationreasoning
Dietary lipids may influence host physiology through interaction with the gut microbiota.
“Hence, dietary lipids may influence host physiology through interaction with the gut microbiota.”
Quote in the paperSubstantial claim - Premisecitation
Therapies targeted against the gut microbiota improve metabolic function in humans.
“Therapies targeted against the gut microbiota have been shown to improve the metabolic function in humans [2, 3]”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [2] Vrieze A, Van Nood E, Holleman F, Salojarvi J, Kootte RS, Bartelsman JF et al. Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome. Gastroenterology. 2012;143(4):913-6.e7. doi:10.1053/j.gastro.2012.06.031. source
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- cites [3] Koutnikova H, Genser B, Monteiro-Sepulveda M, Faurie J-M, Rizkalla S, Schrezenmeir J et al. Impact of bacterial probiotics on obesity, diabetes and non-alcoholic fatty liver disease related variables: a systematic review and meta-analysis of randomised controlled trials. 2019;9(3):e017995. doi:10.1136/bmjopen-2017-017995 %J BMJ Open. source
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- Premisecitation
Conjugated linoleic acid can be produced by several gut bacteria including Lactobacillus, Butyrivibrio, and Megasphaera.
“Conjugated linoleic acid (CLA) can be produced by several gut bacteria including Lactobacillus, Butyrivibrio, and Megasphaera [19, 20].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [19] Kim YJ. Liu RH. Increase of Conjugated Linoleic Acid Content in Milk by Fermentation with Lactic Acid Bacteria. 2002;67(5):1731–7. https://doi.org/10.1111/j.1365-2621.2002.tb08714.x . source
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- Premisecitation
A diet with milk fat, but not diets with lard or safflower oil, increased expansion of Bilophila wadsworthia in mice.
“Devkota et al showed that a diet with milk fat, but not diets with lard or safflower oil, increased expansion of Bilophila wadsworthia in mice [13].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [13] Devkota S, Wang Y, Musch MW, Leone V, Fehlner-Peach H, Nadimpalli A et al. Dietary-fat-induced taurocholic acid promotes pathobiont expansionand colitis in Il10-/- mice. Nature. 2012;487(7405):104-8. https://doi.org/10.1038/nature11225 . source
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- Premisecitation
The antibacterial action of fatty acids is affected by carbon chain length, saturation and double bond position.
“The antibacterial action of fatty acids is affected by carbon chain length, saturation and double bond position [17].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [17] Zheng CJ, Yoo JS, Lee TG, Cho HY, Kim YH, Kim WG. Fatty acid synthesis is a target for antibacterial activity of unsaturated fatty acids. FEBS letters. 2005;579(23):5157–62. https://doi.org/10.1016/j.febslet.2005.08.028 . source
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- Premisecitation
In mice fed a high-fat diet containing lard compared to an isocaloric high-fat diet containing fish oil, phylogenetic diversity and abundance of Akkermansia muciniphila, Lactobacillus and Bifidobacterium were lower in mice on a lard diet.
“In another study where mice fed a high-fat diet containing lard, rich in saturated fat, were compared to mice fed a isocaloric high-fat diet containing fish oil, rich in n-3 PUFA, it was found that phylogenetic diversity and abundance of the beneficial bacteria Akkermansia muciniphila, Lactobacillus and Bifidobacterium were lower in mice on a lard diet [10].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [10] Caesar R, Tremaroli V, Kovatcheva-Datchary P, Cani Patrice D, Bäckhed F. Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling. Cell Metabolism. 2015;22(4):658–68. https://doi.org/10.1016/j.cmet.2015.07.026 . source
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- Premisecitation
Fatty acids have a broad spectrum of antibacterial activity including lysis and solubilization of bacterial cell membranes and inhibition of ATP production.
“Fatty acids have a broad spectrum of antibacterial activity including lysis and solubilization of bacterial cell membranes [14, 15] and inhibition of ATP production [16].”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [14] Jackman JA, Yoon BK, Li D, Cho NJ. Nanotechnology Formulations for Antibacterial Free Fatty Acids and Monoglycerides. Molecules (Basel, Switzerland). 2016;21(3):305. https://doi.org/10.3390/molecules21030305 . source
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- cites [15] Shilling M, Matt L, Rubin E, Visitacion MP, Haller NA, Grey SF, et al. Antimicrobial effects of virgin coconut oil and its medium-chain fatty acids on Clostridium difficile. Journal of medicinal food. 2013;16(12):1079–85. https://doi.org/10.1089/jmf.2012.0303 . source
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- cites [16] Sheu CW, Freese E. Effects of fatty acids on growth and envelope proteins of Bacillus subtilis. J Bacteriol. 1972;111(2):516–24. source
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- Premisecitation
In a mouse model of alcoholic liver disease, ethanol was found to inhibit biosynthesis of saturated fatty acids by the intestinal microflora.
“For example, in a mouse model of alcoholic liver disease, ethanol was found to inhibit biosynthesis of saturated fatty acids by the intestinal microflora.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [18] Chen P, Torralba M, Tan J, Embree M, Zengler K, Starkel P, et al. Supplementation of saturated long-chain fatty acids maintains intestinal eubiosis and reduces ethanol-induced liver injury in mice. Gastroenterology. 2015;148(1):203–14.e16. https://doi.org/10.1053/j.gastro.2014.09.014 . source
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- Premisecitation
Different bacteria produce different ratios of CLA isomers.
“Different bacteria produce different ratios of CLA isomers [25, 26]”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [25] Coakley M, Ross RP, Nordgren M, Fitzgerald G, Devery R, Stanton C. Conjugated linoleic acid biosynthesis by human-derived Bifidobacterium species. Journal of applied microbiology. 2003;94(1):138–45. source
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- cites [26] Lee HY, Park JH, Seok SH, Baek MW, Kim DJ, Lee KE, et al. Human originated bacteria, Lactobacillus rhamnosus PL60, produce conjugated linoleic acid and show anti-obesity effects in diet-induced obese mice. Biochim Biophys Acta. 2006;1761(7):736–44. https://doi.org/10.1016/j.bbalip.2006.05.007 . source
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- Premisecitation
Transplantation of cecum microbiota into germ-free mice showed that the diet-induced differences in host phenotype were partly caused by the gut microbiota.
“Transplantation of cecum microbiota into germ-free (GF) mice showed that the diet-induced differences in host phenotype were partly caused by the gut microbiota.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [10] Caesar R, Tremaroli V, Kovatcheva-Datchary P, Cani Patrice D, Bäckhed F. Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling. Cell Metabolism. 2015;22(4):658–68. https://doi.org/10.1016/j.cmet.2015.07.026 . source
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- Premisecitation
Lipid levels are associated with the gut microbiota composition.
“However, several reports have shown that lipid levels are associated with the gut microbiota composition, and mechanistic links between lipid metabolism and microbial metabolites have been described in mouse models.”
Quote in the paperSubstantial claim - Premisecitation
Circulating triglycerides, HDL, and total cholesterol levels are increased by the gut microbiota in mice on a high-fat diet.
“In contrast, circulating triglycerides, HDL, and total cholesterol levels are increased by the gut microbiota in mice on a high-fat diet [31].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [31] Rabot S, Membrez M, Bruneau A, Gerard P, Harach T, Moser M, et al. Germ-free C57BL/6J mice are resistant to high-fat-diet-induced insulin resistance and have altered cholesterol metabolism. FASEB J. 2010:4948–59. https://doi.org/10.1096/fj.10-164921 . source
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- Premisecitation
In obese rats fed a high-fat diet, Bifidobacterium spp. decreased levels of circulating triglycerides and LDL and increased levels of HDL.
“Similarly, in obese rats fed a high-fat diet, Bifidobacterium spp. decreased levels of circulating triglycerides and LDL and increased levels of HDL [35].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [35] An HM, Park SY, Lee DK, Kim JR, Cha MK. Lee SW et al. Antiobesity and lipid-lowering effects of Bifidobacterium spp. in high fat diet-induced obese rats. Lipids Health Dis. 2011;10:116. https://doi.org/10.1186/1476-511x-10-116 . source
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- Premisecitation
Germ-free mice are protected against diet-induced obesity through a combination of several mechanisms including increased fatty acid oxidation and decreased deposition of triglycerides in adipocytes compared to conventionally raised mice.
“Importantly, GF mice are protected against diet-induced obesity through a combination of several mechanisms including increased fatty acid oxidation and decreased deposition of triglycerides in adipocytes compared to CONV-R mice [29].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [29] Backhed F, Manchester JK, Semenkovich CF, Gordon JI. Mechanisms underlying the resistance to diet-induced obesity in germ-free mice. Proc Natl Acad Sci U S A. 2007;104(3):979–84. https://doi.org/10.1073/pnas.0605374104 . source
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- May combine two claims. 16
- Classified as probably not a substantial claim. 2
May combine two claims.
PremisecitationLipids affect the gut microbiota both as substrates for bacterial metabolic processes and by inhibiting bacterial growth by toxic influence.
“Lipids affect the gut microbiota both as substrates for bacterial metabolic processes, and by inhibiting bacterial growth by toxic influence.”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [14] Jackman JA, Yoon BK, Li D, Cho NJ. Nanotechnology Formulations for Antibacterial Free Fatty Acids and Monoglycerides. Molecules (Basel, Switzerland). 2016;21(3):305. https://doi.org/10.3390/molecules21030305 . source
Not checked in the free run.
- cites [15] Shilling M, Matt L, Rubin E, Visitacion MP, Haller NA, Grey SF, et al. Antimicrobial effects of virgin coconut oil and its medium-chain fatty acids on Clostridium difficile. Journal of medicinal food. 2013;16(12):1079–85. https://doi.org/10.1089/jmf.2012.0303 . source
Not checked in the free run.
- cites [16] Sheu CW, Freese E. Effects of fatty acids on growth and envelope proteins of Bacillus subtilis. J Bacteriol. 1972;111(2):516–24. source
Not checked in the free run.
May combine two claims.
PremisecitationIncreased levels of B. wadsworthia were associated with a pro-inflammatory immune response and increased incidence of colitis in genetically susceptible mice.
“The increased levels of B. wadsworthia were associated with a pro-inflammatory immune response and increased incidence of colitis in genetically susceptible mice.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [13] Devkota S, Wang Y, Musch MW, Leone V, Fehlner-Peach H, Nadimpalli A et al. Dietary-fat-induced taurocholic acid promotes pathobiont expansionand colitis in Il10-/- mice. Nature. 2012;487(7405):104-8. https://doi.org/10.1038/nature11225 . source
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Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationObesity is linked to dysregulation of lipid metabolism, which may result in abnormal levels of blood lipids, ectopic lipid deposition and associated metabolic diseases such as non-alcoholic liver disease and atherosclerosis.
“Obesity is linked to dysregulation of lipid metabolism, which may result in abnormal levels of blood lipids, ectopic lipid deposition and associated metabolic diseases such as non-alcoholic liver disease (NAFLD) [8] and atherosclerosis [9].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [8] Katsiki N, Mikhailidis DP, Mantzoros CS. Non-alcoholic fatty liver disease and dyslipidemia: An update. Metabolism: clinical and experimental. 2016;65(8):1109–23. https://doi.org/10.1016/j.metabol.2016.05.003 . source
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- cites [9] Grundy SM. Metabolic syndrome update. Trends Cardiovasc Med. 2016;26(4):364–73. https://doi.org/10.1016/j.tcm.2015.10.004 . source
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May combine two claims.
PremisecitationDietary supplementation with saturated long-chain fatty acids, which were metabolized by and promoted growth of Lactobacillus, reversed alcohol-induced dysbiosis, stabilized the intestinal gut barrier, and reduced liver injury.
“Dietary supplementation with saturated long-chain fatty acids, which were metabolized by and promoted growth of Lactobacillus, reversed alcohol-induced dysbiosis, stabilized the intestinal gut barrier, and reduced liver injury [18].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [18] Chen P, Torralba M, Tan J, Embree M, Zengler K, Starkel P, et al. Supplementation of saturated long-chain fatty acids maintains intestinal eubiosis and reduces ethanol-induced liver injury in mice. Gastroenterology. 2015;148(1):203–14.e16. https://doi.org/10.1053/j.gastro.2014.09.014 . source
Not checked in the free run.
May combine two claims.
PremisecitationThe lard diet reduced insulin sensitivity and increased inflammation in white adipose tissue through activation of Toll-like receptor 4 signaling.
“The lard diet also reduced insulin sensitivity and increased inflammation in white adipose tissue (WAT) through activation of Toll-like receptor 4 (TLR4) signaling.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [10] Caesar R, Tremaroli V, Kovatcheva-Datchary P, Cani Patrice D, Bäckhed F. Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling. Cell Metabolism. 2015;22(4):658–68. https://doi.org/10.1016/j.cmet.2015.07.026 . source
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Probably not a substantial claim: may not pass S3 (load-bearing).
Premisenone givenMechanistic links between lipid metabolism and microbial metabolites have been described in mouse models.
“mechanistic links between lipid metabolism and microbial metabolites have been described in mouse models.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationThe gut microbiota differs between mice fed diets that are high or low in fat and between diets that contain equal amounts of fat but from different sources.
“The gut microbiota has been shown to differ between mice fed diets that are high or low in fat and between diets that contain equal amounts of fat but from different sources [10–13] (Fig. 1).”
Quote in the paperSubstantial claim0 of 4 sources checked- cites [10] Caesar R, Tremaroli V, Kovatcheva-Datchary P, Cani Patrice D, Bäckhed F. Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling. Cell Metabolism. 2015;22(4):658–68. https://doi.org/10.1016/j.cmet.2015.07.026 . source
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- cites [11] Just S, Mondot S, Ecker J, Wegner K, Rath E, Gau L, et al. The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism. Microbiome. 2018;6(1):134. https://doi.org/10.1186/s40168-018-0510-8 . source
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- cites [12] Lam YY, Ha CW, Hoffmann JM, Oscarsson J, Dinudom A, Mather TJ, et al. Effects of dietary fat profile on gut permeability and microbiota and their relationships with metabolic changes in mice. Obesity (Silver Spring). 2015;23(7):1429–39. https://doi.org/10.1002/oby.21122 . source
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- cites [13] Devkota S, Wang Y, Musch MW, Leone V, Fehlner-Peach H, Nadimpalli A et al. Dietary-fat-induced taurocholic acid promotes pathobiont expansionand colitis in Il10-/- mice. Nature. 2012;487(7405):104-8. https://doi.org/10.1038/nature11225 . source
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May combine two claims.
PremisecitationIn a study combining lard or palm oil with dietary bile acids, lard enhanced fat mass accumulation, impaired glucose tolerance, and elevated levels of hepatic triglycerides in conventionally raised but not germ-free mice when compared to palm oil.
“In another study that combined lard or palm oil with dietary bile acids, lard enhanced fat mass accumulation, impaired glucose tolerance, and elevated levels of hepatic triglycerides in conventionally raised (CONV-R) but not in GF mice when compared to palm oil [11].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [11] Just S, Mondot S, Ecker J, Wegner K, Rath E, Gau L, et al. The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism. Microbiome. 2018;6(1):134. https://doi.org/10.1186/s40168-018-0510-8 . source
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PremisereasoningDietary composition is central to the metabolic output of the gut microbiota because the gut microbiota processes dietary nutrients into metabolites and the diet affects the gut microbiota composition and thereby its metabolic potential and impact on the host.
“Dietary composition is central to the metabolic output of the gut microbiota because: (1) the gut microbiota processes dietary nutrients into metabolites and (2) the diet affects the gut microbiota composition and thereby its metabolic potential and impact on the host.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationDiets with saturated fat or n-6 PUFA induced weight gain, but only saturated fat increased insulin resistance, colonic permeability, and mesenteric fat inflammation.
“A comparison of mice on a variety of diets (low-fat diet and diets containing high levels of saturated fat, n-6 PUFA or n-3 PUFA) showed that diets with saturated fat or n-6 PUFA induced weight gain, but only saturated fat increased insulin resistance, colonic permeability, and mesenteric fat inflammation [12].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [12] Lam YY, Ha CW, Hoffmann JM, Oscarsson J, Dinudom A, Mather TJ, et al. Effects of dietary fat profile on gut permeability and microbiota and their relationships with metabolic changes in mice. Obesity (Silver Spring). 2015;23(7):1429–39. https://doi.org/10.1002/oby.21122 . source
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May combine two claims.
PremisecitationMilk fat promoted taurine-conjugation of bile acids, which increases the availability of sulfur used by B. wadsworthia.
“Milk fat promoted taurine-conjugation of bile acids, which increases the availability of sulfur used by B. wadsworthia.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [13] Devkota S, Wang Y, Musch MW, Leone V, Fehlner-Peach H, Nadimpalli A et al. Dietary-fat-induced taurocholic acid promotes pathobiont expansionand colitis in Il10-/- mice. Nature. 2012;487(7405):104-8. https://doi.org/10.1038/nature11225 . source
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May combine two claims.
PremisecitationIn mice fed a high-fat high-cholesterol diet, Lactobacillus curvatus alone or together with Lactobacillus plantarum reduced cholesterol in plasma and liver and the two strains had a synergistic effect on hepatic triglycerides.
“In mice fed a high-fat high-cholesterol diet, Lactobacillus curvatus alone or together with Lactobacillus plantarum reduced cholesterol in plasma and liver and the two strains had a synergistic effect on hepatic triglycerides [34].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [34] Yoo SR, Kim YJ, Park DY, Jung UJ, Jeon SM, Ahn YT, et al. Probiotics L. plantarum and L. curvatus in combination alter hepatic lipid metabolism and suppress diet-induced obesity. Obesity (Silver Spring). 2013;21(12):2571–8. https://doi.org/10.1002/oby.20428 . source
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PremisecitationThe gut microbiota affects lipid composition in host tissues and serum and increases clearance of triglycerides from the circulation.
“Furthermore, lipidomics analysis of GF and CONV-R mice fed a regular chow diet showed that the gut microbiota affects lipid composition in host tissues and serum and increases clearance of triglycerides from the circulation [30].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [30] Velagapudi VR, Hezaveh R, Reigstad CS, Gopalacharyulu P, Yetukuri L, Islam S, et al. The gut microbiota modulates host energy and lipid metabolism in mice. Journal of Lipid Research. 2010;51(5):1101–12. https://doi.org/10.1194/jlr.M002774 . source
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May combine two claims.
PremisecitationThe gut microbiota induces hepatic production of monounsaturated fatty acids and elongation of PUFA, and acetate produced by the gut microbiota is used as precursor in hepatic fatty acid synthesis.
“Comparisons between CONV-R and GF mice have also shown that the gut microbiota induces hepatic production of monounsaturated fatty acids and elongation of PUFA, and that acetate produced by the gut microbiota is used as precursor in hepatic fatty acid synthesis [32].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [32] Kindt A, Liebisch G, Clavel T, Haller D, Hormannsperger G, Yoon H, et al. The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice. Nat Commun. 2018;9(1):3760. https://doi.org/10.1038/s41467-018-05767-4 . source
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May combine two claims.
Premisecitation10-hydroxy-cis-12-octadecenoic acid enhances intestinal barrier function and suppresses the development of colitis in mice in a free fatty acids 1 (FFR1/GPR40)-dependent manner.
“10-hydroxy-cis-12-octadecenoic acid (HYA) enhances intestinal barrier function and suppresses the development of colitis in mice in a free fatty acids 1 (FFR1/GPR40)-dependent manner [27].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [27] Miyamoto J, Mizukure T, Park SB, Kishino S, Kimura I, Hirano K, et al. A gut microbial metabolite of linoleic acid, 10-hydroxy-cis-12-octadecenoic acid, ameliorates intestinal epithelial barrier impairment partially via GPR40-MEK-ERK pathway. J Biol Chem. 2015;290(5):2902–18. https://doi.org/10.1074/jbc.M114.610733 . source
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May combine two claims.
Premisecitation10-oxo-cis-12-octadecenoic acid increases adiponectin production and glucose uptake in a PPARγ-dependent manner, and contributes to the prevention of obesity-related metabolic perturbations.
“Another hydroxylated CLA intermediate - 10-oxo-cis-12-octadecenoic acid (KetoA) - increases adiponectin production and glucose uptake in a PPARγ-dependent manner, and contributes to the prevention of obesity-related metabolic perturbations [28].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [28] Goto T, Kim YI, Furuzono T, Takahashi N, Yamakuni K, Yang HE, et al. 10-oxo-12(Z)-octadecenoic acid, a linoleic acid metabolite produced by gut lactic acid bacteria, potently activates PPARgamma and stimulates adipogenesis. Biochem Biophys Res Commun. 2015;459(4):597–603. https://doi.org/10.1016/j.bbrc.2015.02.154 . source
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May combine two claims.
PremisecitationThe microbiota downregulates cholesterol biosynthesis and increased hepatic levels of cholesterol specifically in mice fed lard.
“In another study where CONV-R and GF mice were fed lard or fish oil diet it was also found that the microbiota downregulates cholesterol biosynthesis and increased hepatic levels of cholesterol specifically in mice fed lard [33].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [33] Schedin-Weiss S, Caesar I, Winblad B, Blom H, Tjernberg LO. Super-resolution microscopy reveals gamma-secretase at both sides of the neuronal synapse. Acta Neuropathol Commun. 2016;4:29. https://doi.org/10.1186/s40478-016-0296-5 . source
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Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In dyslipidemia, there is less diversity of intestinal microbiota and a greater chance of dysbiosis, inflammation, and changes in intestinal permeability, with negative consequences for the health of the host.
“In this sense, in the host, there is less diversity of intestinal microbiota and a greater chance of dysbiosis. That is, a greater chance of inflammation and changes in intestinal permeability is observed, with negative consequences for the health of the host (81).”
From Kefir and Intestinal Microbiota Modulation: Implications in Human Health (2021) · cites this paper as [81]
The section on gut microbiota and lipid metabolism links lower microbial gene richness to higher cholesterol and triglycerides, while the section on lipopolysaccharides, gut permeability and inflammation links dysbiosis, increased permeability and inflammation to high-fat-diet steatosis in mice. The paper does not establish that dyslipidemia generally entails reduced intestinal microbial diversity and an increased chance of all the stated outcomes in the host; those findings concern different measures and conditions. Page numbers were not available in our copy. (LLM, conf=0.85)
Experimental — accuracy not yet measuredIn dyslipidemia, changes in the production of short-chain fatty acids and bile acids have been observed.
“In dyslipidemia, changes in the production of short-chain fatty acids and bile acids have been observed.”
From Kefir and Intestinal Microbiota Modulation: Implications in Human Health (2021) · cites this paper as [81]
The Bile acids section (page unavailable) reports altered fecal bile acid composition in patients with NASH, a condition the paper discusses alongside dyslipidemia. The Short-chain fatty acids section describes how these acids are produced and affect lipid metabolism, but does not report observed changes in their production in dyslipidemia. Altered bile acid composition also does not establish altered bile acid production. (LLM, conf=0.78)
Experimental — accuracy not yet measuredBoth short-chain fatty acids and bile acids participate in lipid metabolism and intestinal microbiota change.
“Both factors participate in lipid metabolism and intestinal microbiota change (81), indicating that modulation of intestinal microbiota may be a therapeutic alternative to prevent dyslipidemia.”
From Kefir and Intestinal Microbiota Modulation: Implications in Human Health (2021) · cites this paper as [81]
The Short-chain fatty acids section and Fig. 2 describe SCFAs as bacterial metabolites that regulate host lipid metabolism. The Bile acids section and the dietary-lipids interaction section link bile acids to lipid metabolism and a change in a gut bacterial population. Our copy does not establish that SCFAs themselves change intestinal microbiota composition; its discussion of fatty acids affecting that composition concerns dietary fatty acids. (LLM, conf=0.83)
Experimental — accuracy not yet measuredModulation of intestinal microbiota may be a therapeutic alternative to prevent dyslipidemia.
“Both factors participate in lipid metabolism and intestinal microbiota change (81), indicating that modulation of intestinal microbiota may be a therapeutic alternative to prevent dyslipidemia.”
From Kefir and Intestinal Microbiota Modulation: Implications in Human Health (2021) · cites this paper as [81]
The section on clinical interventions reports that microbiota-targeted approaches have improved serum lipid profiles, supporting their potential as a therapeutic approach. It discusses treatment rather than prevention of dyslipidemia, however, and says the long-term benefits of these interventions remain uncertain. The copy provides no page number for these passages. (LLM, conf=0.84)
Experimental — accuracy not yet measuredShort-chain fatty acids are metabolite substrates that participate in energy production, lipogenesis, gluconeogenesis, and cholesterol synthesis.
“Short-chain fatty acids are metabolite substrates that participate in energy production, lipogenesis, gluconeogenesis, and cholesterol synthesis.”
From Kefir and Intestinal Microbiota Modulation: Implications in Human Health (2021) · cites this paper as [81]
Primary bile acids can bind to the farnesoid X receptor, and this molecule is also related to the development of obesity.
“On the other hand, primary bile acids can bind to the farnesoid X receptor, and this molecule is also related to the development of obesity.”
From Kefir and Intestinal Microbiota Modulation: Implications in Human Health (2021) · cites this paper as [81]
Intestinal bacteria such as Bifidobacterium, Butyrivibrio, Enterobacter, Lactobacillus, Clostridium, Citrobacter, Roseburia, Klebsiella, and Megasphaera can produce conjugated fatty acid metabolites from fat-enriched diets.
“Intestinal bacteria such as Bifidobacterium, Butyrivibrio, Enterobacter, Lactobacillus, Clostridium, Citrobacter, Roseburia, Klebsiella, and Megasphaera can produce conjugated fatty acid metabolites from fat-enriched diets.118”
From Regulation of Intestinal Barrier Function by Microbial Metabolites (2021) · cites this paper as [118]
Specific microbes directly contribute to BA transformation, impacting the BA pool's composition and size.
“Specific microbes directly contribute to BA transformation, impacting the BA pool’s composition and size (317).”
From Signalling cognition: The gut microbiota and hypothalamic-pituitary-adrenal axis (2023) · cites this paper as [317]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
Reference 33 does not match the cited microbiota study
MinorThe text cites reference 33 for a comparison of gut microbiota and hepatic cholesterol in mice, but reference 33 is titled as a study of gamma-secretase at neuronal synapses.
“In another study where CONV-R and GF mice were fed lard or fish oil diet it was also found that the microbiota downregulates cholesterol biosynthesis and increased hepatic levels of cholesterol specifically in mice fed lard [33].”
“33. Schedin-Weiss S Caesar I Winblad B Blom H Tjernberg LO Super-resolution microscopy reveals gamma-secretase at both sides of the neuronal synapse Acta Neuropathol Commun. 2016 4 29 10.1186/s40478-016-0296-5 27036709 PMC4818506”
Figure 2 misidentifies GPR41 as GPR43
MinorThe Figure 2 legend labels GPR41 as "GPR43(FFAR3)," while the main text identifies GPR41 as FFAR3 and GPR43 as FFAR2.
“GPR41, G-protein coupled receptors GPR43(FFAR3)”
“GPR43/FFAR2 and GPR41/FFAR3”
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- Everard A, Geurts L, Caesar R, Van Hul M, Matamoros S, Duparc T, et al. Intestinal epithelial MyD88 is a sensor switching host metabolism towards obesity according to nutritional status. Nat Commun. 2014;5:5648. https://doi.org/10.1038/ncomms6648 . · DOI
Cited by
Sorted by citations
Regulation of Intestinal Barrier Function by Microbial Metabolites
Ghosh, S., Whitley, C. S., Haribabu, B., & Jala, V. R. (2021) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2021.02.007 · Cited by 835 · see citing works
Signalling cognition: The gut microbiota and hypothalamic-pituitary-adrenal axis
Rusch, J. A., Layden, B. T., & Dugas, L. R. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.1130689 · Cited by 415 · see citing works
You Are What You Eat—The Relationship between Diet, Microbiota, and Metabolic Disorders—A Review
Moszak, M., Szulińska, M., & Bogdański, P. (2020) · Nutrients · doi:10.3390/nu12041096 · Cited by 397 · see citing works
Grosso, G., Laudisio, D., Frias-Toral, E., Barrea, L., Muscogiuri, G., Savastano, S., & Colao, A. (2022) · Nutrients · doi:10.3390/nu14061137 · Cited by 255 · see citing works
LeFort, K. R., Rungratanawanich, W., & Song, B.-J. (2024) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-023-05061-7 · Cited by 202 · see citing works
Kefir and Intestinal Microbiota Modulation: Implications in Human Health
Peluzio, M. D. C. G., Dias, M. D. M. E., Martinez, J. A., & Milagro, F. I. (2021) · Frontiers in Nutrition · doi:10.3389/fnut.2021.638740 · Cited by 92 · see citing works
The mechanism of berberine alleviating metabolic disorder based on gut microbiome
Wang, H., Zhang, H., Gao, Z., Zhang, Q., & Gu, C. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.854885 · Cited by 69 · see citing works
“, 2021), high fat diet (Yin et al., 2018; Leeming et al., 2019; Schoeler and Caesar, 2019), antibiotics (Ianiro et al.”
BackgroundZhang, Q., Linke, V., Overmyer, K. A., Traeger, L. L., Kasahara, K., Miller, I. J., Manson, D. E., Polaske, T. J., Kerby, R. L., Kemis, J. H., et al. (2023) · Nature Microbiology · doi:10.1038/s41564-023-01326-w · Cited by 43 · see citing works
[Retracted] A Review of Bile Acid Metabolism and Signaling in Cognitive Dysfunction‐Related Diseases
Weng, Z.-B., Chen, Y.-R., Lv, J.-T., Wang, M.-X., Chen, Z.-Y., Zhou, W., Shen, X.-C., Zhan, L.-B., & Wang, F. (2022) · Oxidative Medicine and Cellular Longevity · doi:10.1155/2022/4289383 · Cited by 32 · see citing works
“a “messenger” in the “gut-brain” axis [10, 11].”
RetractedHan, Q., Bai, Y., Zhou, C., Dong, B., Li, Y., Luo, N., Chen, H., & Yu, Y. (2023) · CNS Neuroscience & Therapeutics · doi:10.1111/cns.14043 · Cited by 26 · see citing works
- Authors
- Schoeler, M., & Caesar, R.
- Affiliations
- University of Gothenburg (SE)
- Corresponding author
- Caesar, Robert
- Venue
- Reviews in Endocrine and Metabolic Disorders
- Published
- 2019-11-09
- Volume
- 20
- Issue
- 4
- Pages
- 461-472
- ISSN
- 1389-9155 (ISSN-L)
- 1573-2606
- PMC
- PMC6938793
- OpenAlex
- W2984669963
- Semantic Scholar
- 33d17564819a1153e48abc717d44e12d7b246245
- Cited by
- 1,163
- References
- 143
- Citations by year
- 2026: 132 · 2025: 230 · 2024: 240 · 2023: 202 · 2022: 197 · 2021: 122 · 2020: 39 · 2019: 1
- FWCI
- 7.90
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Reviews in Endocrine and Metabolic Disorders (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Funders
- Svenska Forskningsrådet Formas ((2017-02001)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Nursing › Nutrition and Dietetics › Fatty Acid Research and Health
- Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
- Keywords
- gut microbiota, dietary fat, lipid metabolism, dyslipidemia, non-alcoholic fatty liver disease, atherosclerosis, short-chain fatty acids, secondary bile acids, trimethylamine, lipopolysaccharide, bacterial metabolites, host-microbe interactions
- MeSH terms
- Gastrointestinal Microbiome, Animals, Bile Acids and Salts, Humans, Lipids, Methylamines, Lipid Metabolism
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-09.
Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-09.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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