Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia
Open accessPublished version of a preprint
Abstract
Altered olfactory function is a common symptom of COVID-19, but its etiology is unknown. A key question is whether SARS-CoV-2 (CoV-2) – the causal agent in COVID-19 – affects olfaction directly, by infecting olfactory sensory neurons or their targets in the olfactory bulb, or indirectly, through perturbation of supporting cells. Here we identify cell types in the olfactory epithelium and olfactory bulb that express SARS-CoV-2 cell entry molecules. Bulk sequencing demonstrated that mouse, non-human primate and human olfactory mucosa expresses two key genes involved in CoV-2 entry, ACE2 and TMPRSS2. However, single cell sequencing revealed that ACE2 is expressed in support cells, stem cells, and perivascular cells, rather than in neurons. Immunostaining confirmed these results and revealed pervasive expression of ACE2 protein in dorsally-located olfactory epithelial sustentacular cells and olfactory bulb pericytes in the mouse. These findings suggest that CoV-2 infection of non-neuronal cell types leads to anosmia and related disturbances in odor perception in COVID-19 patients.
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Written from the paper’s full text.
TL;DR
Single-cell and bulk RNA-seq plus immunostaining show that SARS-CoV-2 entry genes ACE2 and TMPRSS2 are expressed in non-neuronal cells of the olfactory epithelium and bulb—support cells, stem cells, Bowman’s gland cells, and pericytes—but not in olfactory sensory neurons or bulb neurons. The authors propose that infection of these non-neuronal cell types, rather than direct neuronal infection, may underlie COVID-19-associated anosmia.
Key findings
- In human nasal scSeq (33,358 cells), ACE2 was detected in 295 cells and TMPRSS2 in 4,953 cells; among 865 immature and mature OSNs, none expressed ACE2 and only 2 (0.23%) expressed TMPRSS2. ACE2 was detected in sustentacular cells (2.9%), olfactory HBCs (0.8%), respiratory HBCs (1.7%), respiratory ciliated cells (3.6%), and respiratory secretory cells (3.9%).
- In mouse whole olfactory mucosa Drop-seq (29,585 cells), Ace2 was absent from all 17,666 mature OSNs and all 4,674 immature OSNs, but was found in Bowman’s gland cells, olfactory HBCs, and dorsal sustentacular cells; an independent 10x dataset found Ace2 in 2 of 28,769 mature OSNs.
- In mouse olfactory bulb scSeq (nearly 50,000 single cells integrated), Ace2 was absent from OB neurons and detected only in vascular cells, predominantly pericytes; Tmprss2 was not expressed in the OB.
- After methimazole injury, activated HBCs expressed Ace2 at higher levels than resting HBCs; in a Smart-seq2 lineage dataset, Ace2 was detected in >0.7% of GBCs, nearly 2% of activated HBCs, and nearly 3% of sustentacular cells, but not in OSNs. Immunostaining confirmed ACE2 protein in dorsal OE sustentacular microvilli, Bowman’s gland cells, and OB pericytes, but not in OSNs or OB neurons.
Methods
- The study analyzed published and newly generated bulk RNA-seq and single-cell RNA-seq datasets from mouse, macaque, marmoset, and human olfactory mucosa, human nasal biopsy scSeq (Durante et al., GSE139522), mouse whole olfactory mucosa Drop-seq, mouse 10x scSeq, mouse HBC lineage-tracing scSeq, mouse olfactory bulb Drop-seq integrated with a published OB dataset, and Smart-seq2 sequencing of manually sorted OB dopaminergic neurons.
- Expression of CoV-2 entry genes was quantified per cell type using normalized UMI counts, clustering, UMAP visualization, marker-gene annotation, and percentage of cells with at least one transcript; co-expression of ACE2 and TMPRSS2 was tested with Fisher’s exact test (odds ratio 7.088, p=3.74E-57).
- Immunostaining and RNAscope were used in mouse and human tissue to validate transcript findings at the protein level, including ACE2 co-staining with cell-type markers in olfactory epithelium, olfactory bulb, and methimazole-injured tissue.
Limitations
- The paper states that other molecules such as BSG may enable CoV-2 entry independently of ACE2, that ACE2 expression below detection could still permit infection, that syncytia between infected and ACE2-negative cells could damage adjacent neurons, and that inflammation can induce ACE2, so the survey may under-represent ACE2-expressing cell types.
- The paper states that definitive identification of mechanisms underlying COVID-19-mediated anosmia will require additional research, and that inconsistencies remain about ACE2 expression in human neurons/glia and CoV-2 presence in the brain across models.
- Evident from the text: the study is largely expression-based and does not directly demonstrate SARS-CoV-2 infection of the identified cells; key protein and injury data are from mouse, with human data limited to biopsy samples and scSeq that the authors note substantially underestimates the fraction of cells expressing Ace2 transcript.
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Claims the paper makes
0 of 104 cited sources checked · 0 supported · 0 flagged
- Findingcitation
As in humans, Ace2 and other CoV-2 entry-related genes are expressed in the mouse olfactory epithelium.
“These data demonstrate that, as in humans, Ace2 and other CoV-2 entry-related genes are expressed in the mouse olfactory epithelium.”
Quote in the paperSubstantial claim - Findingown data
Immunostaining of human olfactory epithelium biopsy tissue revealed an absence of ACE2 protein in olfactory sensory neurons.
“We confirmed the expression of ACE2 proteins via immunostaining of human olfactory epithelium biopsy tissue, which revealed expression in sustentacular and basal cells, and an absence of ACE2 protein in OSNs (Figs. 2E and S2).”
Quote in the paperSubstantial claim - Findingcitation
After alignment, human olfactory epithelium sustentacular cells were found to express ACE2 and TMPRSS2 at levels similar to those observed in the remainder of the non-nasal respiratory tract.
“after alignment, human OE sustentacular cells were found to express ACE2 and TMPRSS2 at levels similar to those observed in the remainder of the non-nasal respiratory tract (44) (Fig. 3C).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [44] W. Sungnak, N. Huang, C. Bécavin, M. Berg, H. C. A. L. B. Network, SARS-CoV-2 entry genes are most highly expressed in nasal goblet and ciliated cells within human airways. arXiv preprint arXiv:2003.06122, (2020).
Not checked in the free run.
- Findingown data
A two-step alignment procedure identified a correspondence between submucosal gland goblet cells in the respiratory epithelium and Bowman's gland cells in the olfactory epithelium (96% mapping probability).
“This approach revealed a correspondences between submucosal gland goblet cells in the RE and Bowman’s gland cells in the OE (96% mapping probability, see Methods)”
Quote in the paperSubstantial claim - Findingcitation
In human olfactory epithelium scSeq, ACE2 and TMPRSS2 were detected in sustentacular cells and horizontal basal cells.
“Neither ACE2 nor TMPRSS2 were detected in mature OSNs, whereas these genes were detected in both sustentacular cells and HBCs (Fig. 2A-D and S1B-E).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [38] M. A. Durante, S. Kurtenbach, Z. B. Sargi, J. W. Harbour, R. Choi, S. Kurtenbach, G. M. Goss, H. Matsunami, B. J. Goldstein, Single-cell analysis of olfactory neurogenesis and differentiation in adult humans. Nat. Neurosci. 23, 323– 326 (2020). 10.1038/s41593-020-0587-9 32066986 PMC7065961 source
Not checked in the free run.
- Findingown data
In human olfactory epithelium, ACE2 and TMPRSS2 were significantly co-expressed (odds ratio 7.088, p-value 3.74E-57, Fisher's exact test).
“ACE2 and TMPRSS2 were also significantly co-expressed (Odds ratio 7.088, p-value 3.74E-57, Fisher’s exact test).”
Quote in the paperSubstantial claim - Findingown data
In human nasal mucosa, all other respiratory epithelium cell subtypes showed higher frequencies of ACE2 and TMPRSS2 expression than was apparent in olfactory epithelium cells.
“In addition, all other RE cell subtypes showed higher frequencies of ACE2 and TMPRSS2 expression than was apparent in OE cells.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [38] M. A. Durante, S. Kurtenbach, Z. B. Sargi, J. W. Harbour, R. Choi, S. Kurtenbach, G. M. Goss, H. Matsunami, B. J. Goldstein, Single-cell analysis of olfactory neurogenesis and differentiation in adult humans. Nat. Neurosci. 23, 323– 326 (2020). 10.1038/s41593-020-0587-9 32066986 PMC7065961 source
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- Findingcitation
Bulk RNA-Seq of whole olfactory mucosa from macaque, marmoset, and human shows expression of almost all CoV-entry-related genes in all samples.
“we queried previously published bulk RNA-Seq data derived from the whole olfactory mucosa (WOM) of macaque, marmoset and human (43), and found expression of almost all CoV-entry-related genes in all WOM samples (Figure S1A).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [43] L. R. Saraiva, F. Riveros-McKay, M. Mezzavilla, E. H. Abou-Moussa, C. J. Arayata, M. Makhlouf, C. Trimmer, X. Ibarra-Soria, M. Khan, L. Van Gerven, M. Jorissen, M. Gibbs, C. O’Flynn, S. McGrane, P. Mombaerts, J. C. Marioni, J. D. Mainland, D. W. Logan, A transcriptomic atlas of mammalian olfactory mucosae reveals an evolutionary influence on food odor detection in humans. Sci. Adv. 5, eaax0396 (2019). 10.1126/sciadv.aax0396 31392275 PMC6669018 source
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- Findingown data
In mouse olfactory epithelium, only dorsally-located sustentacular cells, which express the markers Sult1c1 and Acsm4, were positive for Ace2.
“Of note, only dorsally-located sustentacular cells, which express the markers Sult1c1 and Acsm4, were positive for Ace2 (Figs. 4D and S4D-E).”
Quote in the paperSubstantial claim - Findingown data
A two-step alignment procedure identified a correspondence between pulmonary ionocytes in the respiratory epithelium and a subset of microvillar cells in the olfactory epithelium (99% mapping probability).
“and between pulmonary ionocytes in the RE and a subset of microvillar cells in the OE (99% mapping probability, see Methods and Figure S3)”
Quote in the paperSubstantial claim - Findingown data
In human olfactory epithelium, genes relevant to cell entry of other coronaviruses were expressed in olfactory sensory neurons as well as in other olfactory epithelium cell types.
“In contrast, genes relevant to cell entry of other CoVs were expressed in OSNs, as well as in other OE cell types.”
Quote in the paperSubstantial claim - Findingown data
Reanalysis of the ACE2-positive subset of human sustentacular cells revealed that all positive cells expressed genetic markers associated with the dorsal epithelium.
“Indeed, reanalysis of the ACE2-positive subset of human sustentacular cells revealed that all positive cells expressed genetic markers associated with the dorsal epithelium (Figure S1D).”
Quote in the paperSubstantial claim - Findingcitation
The de-enrichment of Ace2 and Tmprss2 in olfactory sensory neurons relative to whole olfactory mucosa was also observed in two other mouse RNA-Seq datasets.
“The de-enrichment of Ace2 and Tmprss2 in OSNs relative to WOM was also observed in two other mouse RNA-Seq datasets (47, 48) (Figure S4B).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [47] N. Kanageswaran, M. Demond, M. Nagel, B. S. P. Schreiner, S. Baumgart, P. Scholz, J. Altmüller, C. Becker, J. F. Doerner, H. Conrad, S. Oberland, C. H. Wetzel, E. M. Neuhaus, H. Hatt, G. Gisselmann, Deep sequencing of the murine olfactory receptor neuron transcriptome. PLOS ONE 10, e0113170 (2015). 10.1371/journal.pone.0113170 25590618 PMC4295871 source
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- cites [48] B. M. Colquitt, E. Markenscoff-Papadimitriou, R. Duffié, S. Lomvardas, Dnmt3a regulates global gene expression in olfactory sensory neurons and enables odorant-induced transcription. Neuron 83, 823– 838 (2014). 10.1016/j.neuron.2014.07.013 25123312 PMC4153871 source
Not checked in the free run.
- Findingcitation
In human olfactory epithelium scSeq, neither ACE2 nor TMPRSS2 were detected in mature olfactory sensory neurons.
“Neither ACE2 nor TMPRSS2 were detected in mature OSNs, whereas these genes were detected in both sustentacular cells and HBCs (Fig. 2A-D and S1B-E).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [38] M. A. Durante, S. Kurtenbach, Z. B. Sargi, J. W. Harbour, R. Choi, S. Kurtenbach, G. M. Goss, H. Matsunami, B. J. Goldstein, Single-cell analysis of olfactory neurogenesis and differentiation in adult humans. Nat. Neurosci. 23, 323– 326 (2020). 10.1038/s41593-020-0587-9 32066986 PMC7065961 source
Not checked in the free run.
- Findingown data
Immunostaining of human olfactory epithelium biopsy tissue revealed ACE2 protein expression in sustentacular and basal cells.
“We confirmed the expression of ACE2 proteins via immunostaining of human olfactory epithelium biopsy tissue, which revealed expression in sustentacular and basal cells, and an absence of ACE2 protein in OSNs (Figs. 2E and S2).”
Quote in the paperSubstantial claim - Findingown data
Subsets of olfactory epithelium sustentacular cells, HBCs, and Bowman's gland cells in both mouse and human samples express the CoV-2 receptor ACE2 and the spike protein protease TMPRSS2.
“Here we show that subsets of OE sustentacular cells, HBCs, and Bowman’s gland cells in both mouse and human samples express the CoV-2 receptor ACE2 and the spike protein protease TMPRSS2.”
Quote in the paperSubstantial claim - Findingown data
Immunostaining in mouse suggests ACE2 protein is nearly ubiquitously expressed in sustentacular cells in the dorsal olfactory epithelium, despite sparse detection of Ace2 transcripts by scSeq.
“Critically, immunostaining in the mouse suggests that ACE2 protein is (nearly) ubiquitously expressed in sustentacular cells in the dorsal OE, despite sparse detection of Ace2 transcripts using scSeq.”
Quote in the paperSubstantial claim - Findingown data
After injury, activated HBCs express Ace2 at higher levels than resting HBCs.
“note that activated HBCs express Ace2 at higher levels than resting HBCs”
Quote in the paperNot a substantial claim - Findingown data
Activated horizontal basal cells, recruited after injury, express Ace2 at higher levels than resting stem cells.
“We observe that activated HBCs, which are recruited after injury, express Ace2 at higher levels than those apparent in resting stem cells.”
Quote in the paperSubstantial claim - Findingown data
Immunostaining with anti-ACE2 antibodies confirmed that ACE2 protein was present in activated stem cells under regeneration conditions after methimazole treatment.
“Immunostaining with anti-ACE2 antibodies confirmed that ACE2 protein was present in activated stem cells under these regeneration conditions (Fig. 6E).”
Quote in the paperSubstantial claim - Findingown data
Analysis of the Ace2-positive sustentacular cell population after injury revealed expression of dorsal epithelial markers.
“Analysis of the Ace2-positive sustentacular cell population revealed expression of dorsal epithelial markers (Fig. 6D).”
Quote in the paperNot a substantial claim - Findingown data
Olfactory bulb dopaminergic juxtaglomerular cells express Ceacam1.
“The rodent coronavirus MHV passes from the nose to the bulb, even though rodent OSNs do not express Ceacam1, the main MHV receptor (61, 66) (Figures S4C, S5E, S6A), suggesting that CoVs in the nasal mucosa can reach the brain through mechanisms independent of axonal transport by sensory nerves; interestingly, OB dopaminergic juxtaglomerular cells express Ceacam1 (Fig. 7E), which likely supports”
Quote in the paperSubstantial claim - Findingown data
In mouse olfactory bulb immunostaining, ACE2 staining was not observed in any neuronal cell type.
“Consistent with the scSeq results, staining was not observed in any neuronal cell type (Fig. 7F-G).”
Quote in the paperSubstantial claim - Findingown data
Human olfactory epithelium sustentacular cells express ACE2 and TMPRSS2 at levels comparable to those observed in lung cells.
“Human OE sustentacular cells express these genes at levels comparable to those observed in lung cells.”
Quote in the paperSubstantial claim - Findingown data
After methimazole-induced injury of mouse olfactory epithelium, Ace2 and Tmprss2 are expressed in subsets of sustentacular cells and HBCs, as well as in activated HBCs that serve to regenerate the epithelium.
“This analysis revealed that after injury Ace2 and Tmprss2 are expressed in subsets of sustentacular cells and HBCs, as well as in the activated HBCs that serve to regenerate the epithelium (Figs. 6A-C and S6A; note that activated HBCs express Ace2 at higher levels than resting HBCs).”
Quote in the paperSubstantial claim - Findingown data
Re-analysis of 10 deeply sequenced SMART-Seq2-based scSeq datasets from different regions of the nervous system demonstrated that Ace2 and Tmprss2 expression is almost completely absent from neurons.
“re-analysis of 10 deeply sequenced SMART-Seq2-based scSeq datasets from different regions of the nervous system demonstrated that Ace2 and Tmprss2 expression is almost completely absent from neurons, consistent with prior immunostaining results (52, 53) (Figure S10).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [52] I. Hamming, W. Timens, M. L. C. Bulthuis, A. T. Lely, G. Navis, H. van Goor, Tissue distribution of ACE2 protein, the functional receptor for SARS coronavirus. A first step in understanding SARS pathogenesis. J. Pathol. 203, 631– 637 (2004). 10.1002/path.1570 15141377 PMC7167720 source
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- Findingown data
Smart-seq2-based deep sequencing of single mouse olfactory bulb dopaminergic juxtaglomerular neurons confirmed the virtual absence of Ace2 and Tmprss2 expression in this cell type.
“these experiments confirmed the virtual absence of Ace2 and Tmprss2 expression in this cell type.”
Quote in the paperSubstantial claim - Findingown data
We failed to detect ACE2 expression in mature olfactory sensory neurons at either the transcript or protein levels.
“In contrast, we failed to detect ACE2 expression in mature OSNs at either the transcript or protein levels.”
Quote in the paperSubstantial claim - Findingown data
Of the 17666 mature olfactory sensory neurons and the 4674 immature olfactory sensory neurons, none expressed Ace2.
“Of the 17666 mature OSNs and the 4674 immature OSNs, none of the cells express Ace2.”
Quote in the paperSubstantial claim - Findingown data
In the mouse HBC lineage Smart-Seq2 dataset, Ace2 was detected in HBCs and SUS cells.
“Ace2 and Tmprss2 were both detected in HBCs and SUS cells.”
Quote in the paperSubstantial claim - Findingown data
In the WOM dataset, Ace2 was detected in only 2 out of 28,769 mature olfactory sensory neurons (0.007%).
“In the WOM dataset Ace2 was only detected in 2 out of 28,769 mature OSNs (0.007%)”
Quote in the paperSubstantial claim - Findingown data
In the juvenile and adult mouse whole olfactory bulb scRNAseq datasets, Ace2 was enriched in pericytes.
“In cells from both datasets, Ace2 was enriched in pericytes but was not detected in neurons.”
Quote in the paperSubstantial claim - Findingown data
In the mouse HBC lineage Smart-Seq2 dataset, none of the 51 identified OSNs expressed Ace2.
“Of the 51 OSNs identified, none of them expressed Ace2”
Quote in the paperSubstantial claim - Findingown data
Ace2 was not detected in immature sensory neurons (GBCs, INPs, or iOSNs) in either the WOM or HBC lineage dataset.
“Furthermore, Ace2 was not detected in immature sensory neurons (GBCs, INPs, or iOSNs) in either dataset.”
Quote in the paperSubstantial claim - Findingown data
In the mouse HBC lineage Smart-Seq2 dataset, Tmprss2 was detected in HBCs and SUS cells.
“Ace2 and Tmprss2 were both detected in HBCs and SUS cells.”
Quote in the paperSubstantial claim - Findingown data
In the juvenile and adult mouse whole olfactory bulb scRNAseq datasets, Ace2 was not detected in neurons.
“In cells from both datasets, Ace2 was enriched in pericytes but was not detected in neurons.”
Quote in the paperSubstantial claim - Findingown data
In the mouse HBC lineage Smart-Seq2 dataset, only 1 out of 194 INPs and iOSNs expressed Ace2.
“only 1 out of 194 INPs and iOSNs expressed Ace2”
Quote in the paperSubstantial claim - Findingown data
In the HBC lineage dataset, Ace2 was not detected in any olfactory sensory neurons.
“in the HBC lineage dataset, Ace2 was not detected in any OSNs.”
Quote in the paperSubstantial claim - Findingown data
In olfactory epithelial cells, Ace2 expression was observed in Bowman's gland, olfactory horizontal basal cells, and dorsal sustentacular cells.
“In contrast, in the olfactory epithelial cells, Ace2 expression was observed in the Bowman’s gland, olfactory HBCs, dorsal sustentacular cells.”
Quote in the paperSubstantial claim - Premisecitation
COVID-related anosmia has been reported to occur in at least some cases in the absence of significant nasal inflammation or coryzal symptoms.
“in at least some cases COVID-related anosmia has been reported to occur in the absence of significant nasal inflammation or coryzal symptoms (11, 14-16).”
Quote in the paperSubstantial claim0 of 4 sources checked- cites [11] J. R. Lechien, C. M. Chiesa-Estomba, D. R. De Siati, M. Horoi, S. D. Le Bon, A. Rodriguez, D. Dequanter, S. Blecic, F. El Afia, L. Distinguin, Y. Chekkoury-Idrissi, S. Hans, I. L. Delgado, C. Calvo-Henriquez, P. Lavigne, C. Falanga, M. R. Barillari, G. Cammaroto, M. Khalife, P. Leich, C. Souchay, C. Rossi, F. Journe, J. Hsieh, M. Edjlali, R. Carlier, L. Ris, A. Lovato, C. De Filippis, F. Coppee, N. Fakhry, T. Ayad, S. Saussez, Olfactory and gustatory dysfunctions as a clinical presentation of mild-to-moderate forms of the coronavirus disease (COVID-19): A multicenter European study. Eur. Arch. source
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- Premisecitation
Clinical reports indicate that SARS-CoV-2 infection is associated with high rates of disturbances in smell and taste perception, including anosmia.
“Clinical reports suggest that infection with CoV-2 is associated with high rates of disturbances in smell and taste perception, including anosmia (8-13).”
Quote in the paperSubstantial claim0 of 6 sources checked- cites [8] S. H. R. Bagheri, A. M. Asghari, M. Farhadi, A. R. S. Shamshiri, A. Kabir, S.K. Kamrava, M. Jalessi, A. Mohebbi, R. Alizadeh, A.A.Honormand, Coincidence of COVID-19 epidemic and olfactory dysfunction outbreak. medRxiv 20041889, 27 March 2020.. 10.1101/2020.03.23.20041889 PMC7500422 32974228 source
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- Interpretationown data
The presence of Ace2 and Tmprss2 transcripts in mouse whole olfactory mucosa and their near-total absence in purified olfactory sensory neurons suggest that the molecular components enabling CoV-2 entry are expressed in non-neuronal cell types in the mouse nasal epithelium.
“The presence of Ace2 and Tmprss2 transcripts in mouse WOM and their (near total) absence in purified OSNs suggest that the molecular components that enable CoV-2 entry into cells are expressed in non-neuronal cell types in the mouse nasal epithelium.”
Quote in the paperSubstantial claim- Rests on an assumption: Cells expressing ACE2 and TMPRSS2 are susceptible to SARS-CoV-2 infection, or such expression is sufficient for viral entry.
- Premisecitation
Recovery from typical post-viral anosmia, which is often caused by direct damage to olfactory sensory neurons, frequently takes months.
“recovery from typical post-viral anosmia — which is often caused by direct damage to olfactory sensory neurons (OSNs) — frequently takes months (19-21).”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [19] A. Welge-Lüssen, M. Wolfensberger, Olfactory disorders following upper respiratory tract infections. Adv. Otorhinolaryngol. 63, 125– 132 (2006). 10.1159/000093758 16733337 source
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- Premisecitation
Analyzed samples in prior human upper airway scSeq datasets did not include any olfactory sensory neurons or sustentacular cells, indicating that tissue sampling did not include the olfactory epithelium.
“However, analyzed samples in these datasets did not include any OSNs or sustentacular cells, indicating that tissue sampling in these experiments did not include the OE (41, 42).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [41] M. Deprez et al., A single-cell atlas of the human healthy airways. bioRxiv 884759 23 December 2019. 32726565 source
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- cites [42] F. A. Vieira Braga, G. Kar, M. Berg, O. A. Carpaij, K. Polanski, L. M. Simon, S. Brouwer, T. Gomes, L. Hesse, J. Jiang, E. S. Fasouli, M. Efremova, R. Vento-Tormo, C. Talavera-López, M. R. Jonker, K. Affleck, S. Palit, P. M. Strzelecka, H. V. Firth, K. T. Mahbubani, A. Cvejic, K. B. Meyer, K. Saeb-Parsy, M. Luinge, C.-A. Brandsma, W. Timens, I. Angelidis, M. Strunz, G. H. Koppelman, A. J. van Oosterhout, H. B. Schiller, F. J. Theis, M. van den Berge, M. C. Nawijn, S. A. Teichmann, A cellular census of human lungs identifies novel cell states in health and in asthma. Nat. Med. 25, 1153– 1163 (2 source
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- Premisecitation
Recovery from COVID-related anosmia often occurs over weeks.
“recovery from COVID-related anosmia often occurs over weeks (11, 17, 18)”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [11] J. R. Lechien, C. M. Chiesa-Estomba, D. R. De Siati, M. Horoi, S. D. Le Bon, A. Rodriguez, D. Dequanter, S. Blecic, F. El Afia, L. Distinguin, Y. Chekkoury-Idrissi, S. Hans, I. L. Delgado, C. Calvo-Henriquez, P. Lavigne, C. Falanga, M. R. Barillari, G. Cammaroto, M. Khalife, P. Leich, C. Souchay, C. Rossi, F. Journe, J. Hsieh, M. Edjlali, R. Carlier, L. Ris, A. Lovato, C. De Filippis, F. Coppee, N. Fakhry, T. Ayad, S. Saussez, Olfactory and gustatory dysfunctions as a clinical presentation of mild-to-moderate forms of the coronavirus disease (COVID-19): A multicenter European study. Eur. Arch. source
Not checked in the free run.
- cites [17] Y. Lee, P. Min, S. Lee, S.-W. Kim, Prevalence and Duration of Acute Loss of Smell or Taste in COVID-19 Patients. J. Korean Med. Sci. 35, e174 (2020). 10.3346/jkms.2020.35.e174 32383370 PMC7211515 source
Not checked in the free run.
- cites [18] C. H. Yan, F. Faraji, D. P. Prajapati, C. E. Boone, A. S. DeConde, Association of chemosensory dysfunction and COVID-19 in patients presenting with influenza-like symptoms. Int. Forum Allergy Rhinol. 10, 806– 813 (2020). 10.1002/alr.22579 32279441 PMC7262089 source
Not checked in the free run.
- Premisecitation
Rodent coronavirus MHV passes from nose to bulb even though rodent olfactory sensory neurons do not express Ceacam1, the main MHV receptor.
“The rodent coronavirus MHV passes from the nose to the bulb, even though rodent OSNs do not express Ceacam1, the main MHV receptor (61, 66) (Figures S4C, S5E, S6A), suggesting that CoVs in the nasal mucosa can reach the brain through mechanisms independent of axonal transport by sensory nerves; interestingly, OB dopaminergic juxtaglomerular cells express Ceacam1 (Fig. 7E), which likely supports”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [61] S. L. Youngentob, J. E. Schwob, S. Saha, G. Manglapus, B. Jubelt, Functional consequences following infection of the olfactory system by intranasal infusion of the olfactory bulb line variant (OBLV) of mouse hepatitis strain JHM. Chem. Senses 26, 953– 963 (2001). 10.1093/chemse/26.8.953 11595672 PMC7110209 source
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- cites [66] E. Hemmila, C. Turbide, M. Olson, S. Jothy, K. V. Holmes, N. Beauchemin, Ceacam1a-/- mice are completely resistant to infection by murine coronavirus mouse hepatitis virus A59. J. Virol. 78, 10156– 10165 (2004). 10.1128/JVI.78.18.10156-10165.2004 15331748 PMC515023 source
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- Premisecitation
Autopsies from human patients have found that brain contains the lowest levels of CoV-2 across organs sampled.
“In addition, human CSF samples have failed thus far to reveal CoV-2 RNA (73, 77), and autopsies from human patients have found that the brain contains the lowest levels of CoV-2 across organs sampled (78).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [78] V. G. Puelles, M. Lütgehetmann, M. T. Lindenmeyer, J. P. Sperhake, M. N. Wong, L. Allweiss, S. Chilla, A. Heinemann, N. Wanner, S. Liu, F. Braun, S. Lu, S. Pfefferle, A. S. Schröder, C. Edler, O. Gross, M. Glatzel, D. Wichmann, T. Wiech, S. Kluge, K. Pueschel, M. Aepfelbacher, T. B. Huber, Multiorgan and Renal Tropism of SARS-CoV-2. N. Engl. J. Med. NEJMc2011400 (2020). 10.1056/NEJMc2011400 32402155 PMC7240771 source
Not checked in the free run.
- Premisecitation
Human CSF samples have failed thus far to reveal CoV-2 RNA.
“In addition, human CSF samples have failed thus far to reveal CoV-2 RNA (73, 77), and autopsies from human patients have found that the brain contains the lowest levels of CoV-2 across organs sampled (78).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [73] J. Helms, S. Kremer, H. Merdji, R. Clere-Jehl, M. Schenck, C. Kummerlen, O. Collange, C. Boulay, S. Fafi-Kremer, M. Ohana, M. Anheim, F. Meziani, Neurologic Features in Severe SARS-CoV-2 Infection. N. Engl. J. Med. 382, 2268– 2270 (2020). 10.1056/NEJMc2008597 32294339 PMC7179967 source
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- cites [77] T. Schaller, K. Hirschbühl, K. Burkhardt, G. Braun, M. Trepel, B. Märkl, R. Claus, Postmortem Examination of Patients With COVID-19. JAMA 323, 2518-2520 (2020). 10.1001/jama.2020.8907 32437497 PMC7243161 source
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- Interpretationcitation
CoVs in nasal mucosa can reach brain through mechanisms independent of axonal transport by sensory nerves.
“The rodent coronavirus MHV passes from the nose to the bulb, even though rodent OSNs do not express Ceacam1, the main MHV receptor (61, 66) (Figures S4C, S5E, S6A), suggesting that CoVs in the nasal mucosa can reach the brain through mechanisms independent of axonal transport by sensory nerves; interestingly, OB dopaminergic juxtaglomerular cells express Ceacam1 (Fig. 7E), which likely supports”
Quote in the paperSubstantial claim - Interpretationown data
Primary infection of non-neuronal cell types, rather than sensory or bulb neurons, may be responsible for anosmia and related disturbances in odor perception in COVID-19 patients.
“These findings suggest that CoV-2 infection of non-neuronal cell types leads to anosmia and related disturbances in odor perception in COVID-19 patients.”
- Also stated in: § Discussion · hedged
“Thus primary infection of non-neuronal cell types — rather than sensory or bulb neurons — may be responsible for anosmia and related disturbances in odor perception in COVID-19 patients.”
Quote in the paperSubstantial claim- Rests on an assumption: Cells expressing ACE2 and TMPRSS2 are susceptible to SARS-CoV-2 infection, or such expression is sufficient for viral entry.
- Rests on an assumption: Infection of non-neuronal cells in the olfactory epithelium or olfactory bulb causes anosmia and related disturbances in odor perception in COVID-19 patients.
- Also stated in: § Discussion · hedged
- Premisecitation
ACE2 protein in human brain is predominantly or exclusively expressed in vasculature, specifically within pericytes.
“Multiple immunostaining studies reveal that ACE2 protein in the human brain is predominantly or exclusively expressed in vasculature (and specifically expressed within pericytes) (52, 53, 70), and many neurological symptoms associated with CoV-2 infection like stroke or altered consciousness are consistent with an underlying vasculopathy (71-76).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [52] I. Hamming, W. Timens, M. L. C. Bulthuis, A. T. Lely, G. Navis, H. van Goor, Tissue distribution of ACE2 protein, the functional receptor for SARS coronavirus. A first step in understanding SARS pathogenesis. J. Pathol. 203, 631– 637 (2004). 10.1002/path.1570 15141377 PMC7167720 source
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- cites [53] P. G. Kehoe, S. Wong, N. Al Mulhim, L. E. Palmer, J. S. Miners, Angiotensin-converting enzyme 2 is reduced in Alzheimer’s disease in association with increasing amyloid-β and tau pathology. Alzheimers Res. Ther. 8, 50 (2016). 10.1186/s13195-016-0217-7 27884212 PMC5123239 source
Not checked in the free run.
- cites [70] L. He et al., Pericyte-specific vascular expression of SARS-CoV-2 receptor ACE2 – implications for microvascular inflammation and hypercoagulopathy in COVID-19 patients. bioRxiv,088500 (2020). 10.1101/2020.05.11.088500 source
Not checked in the free run.
- Interpretationown data
Ceacam1 expression in olfactory bulb dopaminergic juxtaglomerular cells likely supports ability of MHV to target bulb and change odor perception.
“The rodent coronavirus MHV passes from the nose to the bulb, even though rodent OSNs do not express Ceacam1, the main MHV receptor (61, 66) (Figures S4C, S5E, S6A), suggesting that CoVs in the nasal mucosa can reach the brain through mechanisms independent of axonal transport by sensory nerves; interestingly, OB dopaminergic juxtaglomerular cells express Ceacam1 (Fig. 7E), which likely supports”
Quote in the paperSubstantial claim - Premisecitation
In a non-human primate model of COVID-19, nasal infection did not lead to identifiable CoV-2 antigens in brain.
“Additionally, two recent studies in mouse models expressing human ACE2 have found CoV-2 in the brain after intranasal inoculation (67, 68), although neither specifically queried the OB; this work stands in contrast to results in a non-human primate model of COVID-19, in which nasal infection did not lead to the presence of identifiable CoV-2 antigens in the brain (83).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [83] V. J. Munster, F. Feldmann, B. N. Williamson, N. van Doremalen, L. Pérez-Pérez, J. Schulz, K. Meade-White, A. Okumura, J. Callison, B. Brumbaugh, V. A. Avanzato, R. Rosenke, P. W. Hanley, G. Saturday, D. Scott, E. R. Fischer, E. de Wit, Respiratory disease in rhesus macaques inoculated with SARS-CoV-2. Nature (2020). 10.1038/s41586-020-2324-7 32396922 PMC7486227 source
Not checked in the free run.
- Interpretationown data
ACE2 is expressed by sustentacular cells that specifically reside in the dorsal epithelium in both mouse and human.
“Taken together, these data demonstrate that ACE2 is expressed by sustentacular cells that specifically reside in the dorsal epithelium in both mouse and human.”
Quote in the paperSubstantial claim - Premisecitation
Many neurological symptoms associated with CoV-2 infection, such as stroke or altered consciousness, are consistent with underlying vasculopathy.
“Multiple immunostaining studies reveal that ACE2 protein in the human brain is predominantly or exclusively expressed in vasculature (and specifically expressed within pericytes) (52, 53, 70), and many neurological symptoms associated with CoV-2 infection like stroke or altered consciousness are consistent with an underlying vasculopathy (71-76).”
Quote in the paperNot a substantial claim0 of 6 sources checked- cites [71] Y. Zhang, M. Xiao, S. Zhang, P. Xia, W. Cao, W. Jiang, H. Chen, X. Ding, H. Zhao, H. Zhang, C. Wang, J. Zhao, X. Sun, R. Tian, W. Wu, D. Wu, J. Ma, Y. Chen, D. Zhang, J. Xie, X. Yan, X. Zhou, Z. Liu, J. Wang, B. Du, Y. Qin, P. Gao, X. Qin, Y. Xu, W. Zhang, T. Li, F. Zhang, Y. Zhao, Y. Li, S. Zhang, Coagulopathy and Antiphospholipid Antibodies in Patients with Covid-19. N. Engl. J. Med. 382, e38 (2020). 10.1056/NEJMc2007575 32268022 PMC7161262 source
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- cites [72] N. Poyiadji, G. Shahin, D. Noujaim, M. Stone, S. Patel, B. Griffith, COVID-19–associated acute hemorrhagic necrotizing encephalopathy: Imaging Features. Radiology 296, E119– E120 (2020). 10.1148/radiol.2020201187 32228363 PMC7233386 source
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- cites [73] J. Helms, S. Kremer, H. Merdji, R. Clere-Jehl, M. Schenck, C. Kummerlen, O. Collange, C. Boulay, S. Fafi-Kremer, M. Ohana, M. Anheim, F. Meziani, Neurologic Features in Severe SARS-CoV-2 Infection. N. Engl. J. Med. 382, 2268– 2270 (2020). 10.1056/NEJMc2008597 32294339 PMC7179967 source
Not checked in the free run.
- cites [74] T. Coolen et al., Early postmortem brain MRI findings in COVID-19 non-survivors. medRxiv, 20090316 8 May 2020. 32546654 source
Not checked in the free run.
- cites [75] T. Chen, D. Wu, H. Chen, W. Yan, D. Yang, G. Chen, K. Ma, D. Xu, H. Yu, H. Wang, T. Wang, W. Guo, J. Chen, C. Ding, X. Zhang, J. Huang, M. Han, S. Li, X. Luo, J. Zhao, Q. Ning, Clinical characteristics of 113 deceased patients with coronavirus disease 2019: Retrospective study. BMJ 368, m1091 (2020). 10.1136/bmj.m1091 32217556 PMC7190011 source
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- cites [76] R. Beyrouti, Characteristics of ischaemic stroke associated with COVID-19. J. Neurol. Neurosurg.Psychiatry, jnnp-2020-323586 (2020). PMC7231545 32354768 source
Not checked in the free run.
- Premisecitation
Dysfunction of smell in many COVID-19 patients is transient.
“Any reasonable pathophysiological mechanism for COVID-19-associated anosmia must account for the high penetrance of smell disorders relative to endemic viruses (12, 91, 92), the apparent suddenness of smell loss that can precede the development of other symptoms (11, 13), and the transient nature of dysfunction in many patients (11, 17, 18); definitive identification of the disease mechanisms”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [11] J. R. Lechien, C. M. Chiesa-Estomba, D. R. De Siati, M. Horoi, S. D. Le Bon, A. Rodriguez, D. Dequanter, S. Blecic, F. El Afia, L. Distinguin, Y. Chekkoury-Idrissi, S. Hans, I. L. Delgado, C. Calvo-Henriquez, P. Lavigne, C. Falanga, M. R. Barillari, G. Cammaroto, M. Khalife, P. Leich, C. Souchay, C. Rossi, F. Journe, J. Hsieh, M. Edjlali, R. Carlier, L. Ris, A. Lovato, C. De Filippis, F. Coppee, N. Fakhry, T. Ayad, S. Saussez, Olfactory and gustatory dysfunctions as a clinical presentation of mild-to-moderate forms of the coronavirus disease (COVID-19): A multicenter European study. Eur. Arch. source
Not checked in the free run.
- cites [17] Y. Lee, P. Min, S. Lee, S.-W. Kim, Prevalence and Duration of Acute Loss of Smell or Taste in COVID-19 Patients. J. Korean Med. Sci. 35, e174 (2020). 10.3346/jkms.2020.35.e174 32383370 PMC7211515 source
Not checked in the free run.
- cites [18] C. H. Yan, F. Faraji, D. P. Prajapati, C. E. Boone, A. S. DeConde, Association of chemosensory dysfunction and COVID-19 in patients presenting with influenza-like symptoms. Int. Forum Allergy Rhinol. 10, 806– 813 (2020). 10.1002/alr.22579 32279441 PMC7262089 source
Not checked in the free run.
- Study design and conductcitation
Recombinant human ACE2 abolished labeling with anti-ACE2 antibody in a previous study in human tissue, demonstrating its specificity.
“Recombinant human ACE2 abolished labeling with this antibody in a previous study in human tissue, further demonstrating its specificity (53).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [53] P. G. Kehoe, S. Wong, N. Al Mulhim, L. E. Palmer, J. S. Miners, Angiotensin-converting enzyme 2 is reduced in Alzheimer’s disease in association with increasing amyloid-β and tau pathology. Alzheimers Res. Ther. 8, 50 (2016). 10.1186/s13195-016-0217-7 27884212 PMC5123239 source
Not checked in the free run.
- Premisecitation
COVID-19-associated anosmia has high penetrance of smell disorders relative to endemic viruses.
“Any reasonable pathophysiological mechanism for COVID-19-associated anosmia must account for the high penetrance of smell disorders relative to endemic viruses (12, 91, 92), the apparent suddenness of smell loss that can precede the development of other symptoms (11, 13), and the transient nature of dysfunction in many patients (11, 17, 18); definitive identification of the disease mechanisms”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [12] C. Menni, A. M. Valdes, M. B. Freidin, C. H. Sudre, L. H. Nguyen, D. A. Drew, S. Ganesh, T. Varsavsky, M. J. Cardoso, J. S. El-Sayed Moustafa, A. Visconti, P. Hysi, R. C. E. Bowyer, M. Mangino, M. Falchi, J. Wolf, S. Ourselin, A. T. Chan, C. J. Steves, T. D. Spector, Real-time tracking of self-reported symptoms to predict potential COVID-19. Nat. Med. 26, 1037– 1040 (2020). 10.1038/s41591-020-0916-2 32393804 PMC7751267 source
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- cites [91] A. Haehner, J. Draf, S. Draeger, K. de With, T. Hummel, Predictive value of sudden olfactory loss in the diagnosis of COVID-19. medRxiv 20081356 3 May 2020. PMC7360503 32526759 source
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- cites [92] F. Shweta et al., Augmented curation of unstructured clinical notes from a massive EHR system reveals specific phenotypic signature of impending COVID-19 diagnosis. arXiv, 2004.09338 [cs.LG] 17 April 2020. PMC7410498 32633720
Not checked in the free run.
- May combine two claims. 36
- Classified as probably not a substantial claim. 46
- The quote only partly states this claim. 1
May combine two claims.
FindingcitationIn mouse whole olfactory mucosa, genes used for cell entry by other coronaviruses (except St3gal4) were expressed and de-enriched in purified olfactory sensory neurons.
“Genes used for cell entry by other CoVs (except St3gal4) were also expressed in WOM, and de-enriched in purified OSNs.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [46] L. R. Saraiva, X. Ibarra-Soria, M. Khan, M. Omura, A. Scialdone, P. Mombaerts, J. C. Marioni, D. W. Logan, Hierarchical deconstruction of mouse olfactory sensory neurons: From whole mucosa to single-cell RNA-seq. Sci. Rep. 5, 18178 (2015). 10.1038/srep18178 26670777 PMC4680959
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May combine two claims.
FindingcitationIn purified mouse olfactory sensory neuron samples, expression of Ace2, Tmprss2, and cathepsins (with the exception of Ctsb) was much lower, and Ace2 expression was nearly absent.
“However, expression of these genes (with the exception of Ctsb) was much lower and Ace2 expression was nearly absent in purified OSN samples (Figs. 4A and S4A, see Legend for counts).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [46] L. R. Saraiva, X. Ibarra-Soria, M. Khan, M. Omura, A. Scialdone, P. Mombaerts, J. C. Marioni, D. W. Logan, Hierarchical deconstruction of mouse olfactory sensory neurons: From whole mucosa to single-cell RNA-seq. Sci. Rep. 5, 18178 (2015). 10.1038/srep18178 26670777 PMC4680959
Not checked in the free run.
May combine two claims.
Findingown dataKey CoV-2 entry-related genes are present in specific cell types in the human olfactory epithelium, but at lower levels of expression than in respiratory epithelium isolated from human nasal mucosa.
“These results demonstrate the presence of key CoV-2 entry-related genes in specific cell types in the OE, but at lower levels of expression than in RE isolated from the human nasal mucosa.”
Quote in the paperSubstantial claimMay combine two claims.
FindingcitationIn human olfactory epithelium, sustentacular cells exhibited the highest frequency of ACE2 expression in the OE (2.9% of cells), although this frequency was slightly lower than that in respiratory ciliated and secretory cells (3.6% and 3.9%, respectively).
“Sustentacular cells exhibited the highest frequency of ACE2 expression in the OE (2.9% of cells) although this frequency was slightly lower than that observed in respiratory ciliated and secretory cells (3.6% and 3.9%, respectively).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [38] M. A. Durante, S. Kurtenbach, Z. B. Sargi, J. W. Harbour, R. Choi, S. Kurtenbach, G. M. Goss, H. Matsunami, B. J. Goldstein, Single-cell analysis of olfactory neurogenesis and differentiation in adult humans. Nat. Neurosci. 23, 323– 326 (2020). 10.1038/s41593-020-0587-9 32066986 PMC7065961
Not checked in the free run.
May combine two claims.
FindingcitationIn mouse whole olfactory mucosa, Ace2 and Tmprss2 were expressed, as were cathepsins Ctsb and Ctsl.
“The CoV-2 receptor Ace2 and the protease Tmprss2 were expressed in WOM, as were the cathepsins Ctsb and Ctsl (Figs. 4A and S4A) (46).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [46] L. R. Saraiva, X. Ibarra-Soria, M. Khan, M. Omura, A. Scialdone, P. Mombaerts, J. C. Marioni, D. W. Logan, Hierarchical deconstruction of mouse olfactory sensory neurons: From whole mucosa to single-cell RNA-seq. Sci. Rep. 5, 18178 (2015). 10.1038/srep18178 26670777 PMC4680959
Not checked in the free run.
May combine two claims.
Findingown dataIn human olfactory epithelium, all HBC subtypes expressed ACE2, but the frequency of ACE2 expression was lower in olfactory HBCs (0.8% of cells) than in respiratory HBCs (1.7% of cells).
“While all HBC subtypes expressed ACE2, the frequency of expression of ACE2 was lower in olfactory HBCs (0.8% of cells) compared to respiratory HBCs (1.7% of cells) (Fig. 2D).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [38] M. A. Durante, S. Kurtenbach, Z. B. Sargi, J. W. Harbour, R. Choi, S. Kurtenbach, G. M. Goss, H. Matsunami, B. J. Goldstein, Single-cell analysis of olfactory neurogenesis and differentiation in adult humans. Nat. Neurosci. 23, 323– 326 (2020). 10.1038/s41593-020-0587-9 32066986 PMC7065961
Not checked in the free run.
May combine two claims.
Findingown dataIn mouse whole olfactory mucosa scSeq (Drop-seq), Ace2 and Tmprss2 were expressed in a fraction of sustentacular and Bowman's gland cells, and a very small fraction of stem cells, but not in olfactory sensory neurons (zero of 17,666 identified mature OSNs).
“Ace2 and Tmprss2 were expressed in a fraction of sustentacular and Bowman’s gland cells, and a very small fraction of stem cells, but not in OSNs (zero of 17,666 identified mature OSNs, Figs. 4C and S4C-D).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataAn independent mouse scSeq dataset (10x Chromium) confirmed that olfactory sensory neurons did not express Ace2 (2 of 28,769 mature OSNs were positive for Ace2), while expression was observed in a fraction of Bowman's gland cells and HBCs.
“An independent mouse scSeq data set (obtained using the 10x Chromium platform, see Methods) confirmed that olfactory sensory neurons did not express Ace2 (2 of 28,769 mature OSNs were positive for Ace2), while expression was observed in a fraction of Bowman’s gland cells and HBCs (Figure S5, see Methods).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataStaining of mouse whole olfactory mucosa showed ACE2 protein in Bowman's gland cells but not in olfactory sensory neurons, and in subsets of respiratory epithelium cells.
“Staining was also observed in Bowman’s gland cells but not in OSNs, and in subsets of RE cells (Fig. 5F-G).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIn mouse olfactory bulb, although other potential CoV proteases were expressed, Tmprss2 was not expressed.
“Although other potential CoV proteases were expressed in the OB, Tmprss2 was not expressed.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIn mouse olfactory bulb scSeq, Ace2 expression was absent from olfactory bulb neurons and was observed only in vascular cells, predominantly pericytes.
“This analysis revealed that Ace2 expression was absent from OB neurons and instead was observed only in vascular cells, predominantly in pericytes, which are involved in blood pressure regulation, maintenance of the blood-brain barrier, and inflammatory responses (51) (Figs. 7A-D and S7-8).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataImmunostaining in the mouse olfactory bulb revealed that blood vessels expressed high levels of ACE2 protein, particularly in pericytes; nearly all pericytes exhibited some degree of staining with ACE2 antibodies.
“Immunostaining in the OB revealed that blood vessels expressed high levels of ACE2 protein, particularly in pericytes; indeed nearly all pericytes exhibited some degree of staining with ACE2 antibodies.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataStaining of mouse whole olfactory mucosa with anti-ACE2 antibodies confirmed that ACE2 protein is expressed in sustentacular cells and is specifically localized to the sustentacular cell microvilli.
“Staining of the mouse WOM with anti-ACE2 antibodies confirmed that ACE2 protein is expressed in sustentacular cells and is specifically localized to the sustentacular cell microvilli (Fig. 5).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataACE2-positive sustentacular cells were identified exclusively within the dorsal subregion of the mouse olfactory epithelium; within that region many (and possibly all) sustentacular cells expressed ACE2.
“ACE2-positive sustentacular cells were identified exclusively within the dorsal subregion of the OE; critically, within that region many (and possibly all) sustentacular cells expressed ACE2 (Fig. 5B-E).”
Quote in the paperSubstantial claimMay combine two claims.
FindingcitationIn a re-analyzed mouse HBC lineage tracing dataset, Ace2 was detected in more than 0.7% of GBCs, nearly 2% of activated HBCs, and nearly 3% of sustentacular cells, but was not detected in OSNs.
“In this dataset, Ace2 was detected in more than 0.7% of GBCs, nearly 2% of activated HBCs and nearly 3% of sustentacular cells but was not detected in OSNs (Figures S6B).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [36] R. B. Fletcher, D. Das, L. Gadye, K. N. Street, A. Baudhuin, A. Wagner, M. B. Cole, Q. Flores, Y. G. Choi, N. Yosef, E. Purdom, S. Dudoit, D. Risso, J. Ngai, Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution. Cell Stem Cell 20, 817– 830.e8 (2017). 10.1016/j.stem.2017.04.003 28506465 PMC5484588
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May combine two claims.
Findingown dataMouse vascular pericytes in the olfactory bulb express ACE2, while we did not detect ACE2 in olfactory bulb neurons.
“Similarly, mouse vascular pericytes in the OB express ACE2, while we did not detect ACE2 in OB neurons.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataNearly all vascular pericytes expressed ACE2 protein, although only a fraction of olfactory bulb pericytes were positive for Ace2 transcripts by scSeq.
“Similarly, nearly all vascular pericytes also expressed ACE2 protein, although only a fraction of OB pericytes were positive for Ace2 transcripts when assessed using scSeq.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIn mouse olfactory epithelium after injury, Sult1c1-positive sustentacular cells have higher levels of Ace2 (p=1.87E-03, Mann-Whitney test) and Ace2-positive sustentacular cells have higher levels of Sult1c1 (p=8.06E-07, Mann-Whitney test).
“Sult1c1-positive sustentacular cells have higher levels of Ace2 (p=1.87E-03, Mann-Whitney test) and Ace2-positive sustentacular cells have higher levels of Sult1c1 (p=8.06E-07, Mann-Whitney test).”
Quote in the paperSubstantial claimMay combine two claims.
FindingcitationIn human scSeq data, ACE2 transcripts were detected in only a subset of olfactory epithelium cells, and this low level of observed expression matches or exceeds that observed in respiratory cell types that are infected by CoV-2 in COVID-19 patients.
“Although scSeq revealed ACE2 transcripts in only a subset of OE cells, this low level of observed expression matches or exceeds that observed in respiratory cells types that are infected by CoV-2 in COVID-19 patients (39) (Fig. 3).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [39] W. Sungnak, N. Huang, C. Bécavin, M. Berg, R. Queen, M. Litvinukova, C. Talavera-López, H. Maatz, D. Reichart, F. Sampaziotis, K. B. Worlock, M. Yoshida, J. L. Barnes; HCA Lung Biological Network, SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes. Nat. Med. 26, 681– 687 (2020). 10.1038/s41591-020-0868-6 32327758 PMC8637938 source
Not checked in the free run.
May combine two claims.
Findingown dataAt the cell type level, Ace2 mRNA expression accurately predicted presence of ACE2 protein, and Ace2 transcript-negative cell types, including olfactory sensory neurons, did not express ACE2 protein.
“Although Ace2 transcripts were more rarely detected than protein, there was a clear concordance at the cell type level: expression of Ace2 mRNA in a particular cell type accurately predicted the presence of ACE2 protein, while Ace2 transcript-negative cell types (including OSNs) did not express ACE2 protein.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data295 cells expressed ACE2 and 4953 cells expressed TMPRSS2.
“295 cells expressed ACE2 and 4953 cells expressed TMPRSS2.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataThe filtered human scSeq dataset contained 33358 cells.
“The filtered human scSeq dataset contained 33358 cells.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
FindingcitationA small cluster of excitatory neurons (cluster 13) in the whole olfactory bulb dataset contained neurons from the anterior olfactory nucleus.
“As previously reported, a small cluster of excitatory neurons (cluster 13) contained neurons from the anterior olfactory nucleus.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenIn the manually sorted olfactory bulb dopaminergic neuron dataset, all observed effects were independent of the naris occlusion/sham treatment groups.
“all observed effects here were independent of these treatment groups.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataACE2 was reliably detected in at least 2% and TMPRSS2 was expressed in close to 50% of multiple respiratory epithelial subtypes.
“In contrast, ACE2 was reliably detected in at least 2% and TMPRSS2 was expressed in close to 50% of multiple respiratory epithelial subtypes.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataOf the 865 identified olfactory sensory neurons, none expressed ACE2 and only 2 (0.23%) expressed TMPRSS2.
“Of the 865 identified OSNs, including both immature and mature cells, none of the cells express ACE2 and only 2 (0.23%) expressed TMPRSS2.”
Quote in the paperSubstantial claimMay combine two claims. The quote only partly states this claim.
InterpretationreasoningBecause CoV-2 can infect cells in the lower respiratory tract, the finding that human olfactory epithelium sustentacular cells express ACE2 at levels similar to the non-nasal respiratory tract is consistent with the possibility that these cells express ACE2 at a level permissive for direct infection.
“As CoV-2 can infect cells in the lower respiratory tract (40, 45), these results are consistent with the possibility that specific cell types in the human olfactory epithelium express ACE2 at a level that is permissive for direct infection.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [40] Y. J. Hou, K. Okuda, C. E. Edwards, D. R. Martinez, T. Asakura, K. H. Dinnon 3rd, T. Kato, R. E. Lee, B. L. Yount, T. M. Mascenik, G. Chen, K. N. Olivier, A. Ghio, L. V. Tse, S. R. Leist, L. E. Gralinski, A. Schäfer, H. Dang, R. Gilmore, S. Nakano, L. Sun, M. L. Fulcher, A. Livraghi-Butrico, N. I. Nicely, M. Cameron, C. Cameron, D. J. Kelvin, A. de Silva, D. M. Margolis, A. Markmann, L. Bartelt, R. Zumwalt, F. J. Martinez, S. P. Salvatore, A. Borczuk, P. R. Tata, V. Sontake, A. Kimple, I. Jaspers, W. K. O’Neal, S. H. Randell, R. C. Boucher, R. S. Baric, SARS-CoV-2 Reverse Genetics Reveals a Va source
Not checked in the free run.
- cites [45] N. Zhu, D. Zhang, W. Wang, X. Li, B. Yang, J. Song, X. Zhao, B. Huang, W. Shi, R. Lu, P. Niu, F. Zhan, X. Ma, D. Wang, W. Xu, G. Wu, G. F. Gao, W. Tan; China Novel Coronavirus Investigating and Research Team, A Novel Coronavirus from Patients with Pneumonia in China, 2019. N. Engl. J. Med. 382, 727– 733 (2020). 10.1056/NEJMoa2001017 31978945 PMC7092803 source
Not checked in the free run.
- Rests on an assumption: Cells expressing ACE2 and TMPRSS2 are susceptible to SARS-CoV-2 infection, or such expression is sufficient for viral entry.
Classified as probably not a substantial claim.
PremisecitationSARS-CoV-2 infects cells through interactions between its spike (S) protein and the ACE2 protein on target cells.
“CoV-2 — like SARS-CoV — infects cells through interactions between its spike (S) protein and the ACE2 protein on target cells.”
Quote in the paperSubstantial claim0 of 7 sources checked- cites [4] P. Zhou, X.-L. Yang, X.-G. Wang, B. Hu, L. Zhang, W. Zhang, H.-R. Si, Y. Zhu, B. Li, C.-L. Huang, H.-D. Chen, J. Chen, Y. Luo, H. Guo, R.-D. Jiang, M.-Q. Liu, Y. Chen, X.-R. Shen, X. Wang, X.-S. Zheng, K. Zhao, Q.-J. Chen, F. Deng, L.-L. Liu, B. Yan, F.-X. Zhan, Y.-Y. Wang, G.-F. Xiao, Z.-L. Shi, A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature 579, 270– 273 (2020). 10.1038/s41586-020-2012-7 32015507 PMC7095418 source
Not checked in the free run.
- cites [5] M. Ceccarelli, M. Berretta, E. Venanzi Rullo, G. Nunnari, B. Cacopardo, Differences and similarities between Severe Acute Respiratory Syndrome (SARS)-CoronaVirus (CoV) and SARS-CoV-2. Would a rose by another name smell as sweet? Eur. Rev. Med. Pharmacol. Sci. 24, 2781– 2783 (2020). 32196628
Not checked in the free run.
- cites [6] A. Zumla, J. F. W. Chan, E. I. Azhar, D. S. C. Hui, K.-Y. Yuen, Coronaviruses - drug discovery and therapeutic options. Nat. Rev. Drug Discov. 15, 327– 347 (2016). 10.1038/nrd.2015.37 26868298 PMC7097181
Not checked in the free run.
- cites [22] M. Hoffmann, H. Kleine-Weber, S. Schroeder, N. Krüger, T. Herrler, S. Erichsen, T. S. Schiergens, G. Herrler, N.-H. Wu, A. Nitsche, M. A. Müller, C. Drosten, S. Pöhlmann, SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor. Cell 181, 271– 280.e8 (2020). 10.1016/j.cell.2020.02.052 32142651 PMC7102627 source
Not checked in the free run.
- cites [23] W. Li, M. J. Moore, N. Vasilieva, J. Sui, S. K. Wong, M. A. Berne, M. Somasundaran, J. L. Sullivan, K. Luzuriaga, T. C. Greenough, H. Choe, M. Farzan, Angiotensin-converting enzyme 2 is a functional receptor for the SARS coronavirus. Nature 426, 450– 454 (2003). 10.1038/nature02145 14647384 PMC7095016 source
Not checked in the free run.
- cites [24] W. Li, T. C. Greenough, M. J. Moore, N. Vasilieva, M. Somasundaran, J. L. Sullivan, M. Farzan, H. Choe, Efficient replication of severe acute respiratory syndrome coronavirus in mouse cells is limited by murine angiotensin-converting enzyme 2. J. Virol. 78, 11429– 11433 (2004). 10.1128/JVI.78.20.11429-11433.2004 15452268 PMC521845
Not checked in the free run.
- cites [25] K. Kuba, Y. Imai, S. Rao, H. Gao, F. Guo, B. Guan, Y. Huan, P. Yang, Y. Zhang, W. Deng, L. Bao, B. Zhang, G. Liu, Z. Wang, M. Chappell, Y. Liu, D. Zheng, A. Leibbrandt, T. Wada, A. S. Slutsky, D. Liu, C. Qin, C. Jiang, J. M. Penninger, A crucial role of angiotensin converting enzyme 2 (ACE2) in SARS coronavirus-induced lung injury. Nat. Med. 11, 875– 879 (2005). 10.1038/nm1267 16007097 PMC7095783 source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationThe interaction between SARS-CoV-2 S protein and ACE2 requires cleavage of the S protein, likely by TMPRSS2, although other proteases such as Cathepsin B and L may also be involved.
“This interaction requires cleavage of the S protein, likely by the cell surface protease TMPRSS2, although other proteases (such as Cathepsin B and L, CTSB/CTSL) may also be involved (4-6, 22-25).”
Quote in the paperNot a substantial claim0 of 7 sources checked- cites [4] P. Zhou, X.-L. Yang, X.-G. Wang, B. Hu, L. Zhang, W. Zhang, H.-R. Si, Y. Zhu, B. Li, C.-L. Huang, H.-D. Chen, J. Chen, Y. Luo, H. Guo, R.-D. Jiang, M.-Q. Liu, Y. Chen, X.-R. Shen, X. Wang, X.-S. Zheng, K. Zhao, Q.-J. Chen, F. Deng, L.-L. Liu, B. Yan, F.-X. Zhan, Y.-Y. Wang, G.-F. Xiao, Z.-L. Shi, A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature 579, 270– 273 (2020). 10.1038/s41586-020-2012-7 32015507 PMC7095418 source
Not checked in the free run.
- cites [5] M. Ceccarelli, M. Berretta, E. Venanzi Rullo, G. Nunnari, B. Cacopardo, Differences and similarities between Severe Acute Respiratory Syndrome (SARS)-CoronaVirus (CoV) and SARS-CoV-2. Would a rose by another name smell as sweet? Eur. Rev. Med. Pharmacol. Sci. 24, 2781– 2783 (2020). 32196628
Not checked in the free run.
- cites [6] A. Zumla, J. F. W. Chan, E. I. Azhar, D. S. C. Hui, K.-Y. Yuen, Coronaviruses - drug discovery and therapeutic options. Nat. Rev. Drug Discov. 15, 327– 347 (2016). 10.1038/nrd.2015.37 26868298 PMC7097181
Not checked in the free run.
- cites [22] M. Hoffmann, H. Kleine-Weber, S. Schroeder, N. Krüger, T. Herrler, S. Erichsen, T. S. Schiergens, G. Herrler, N.-H. Wu, A. Nitsche, M. A. Müller, C. Drosten, S. Pöhlmann, SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor. Cell 181, 271– 280.e8 (2020). 10.1016/j.cell.2020.02.052 32142651 PMC7102627 source
Not checked in the free run.
- cites [23] W. Li, M. J. Moore, N. Vasilieva, J. Sui, S. K. Wong, M. A. Berne, M. Somasundaran, J. L. Sullivan, K. Luzuriaga, T. C. Greenough, H. Choe, M. Farzan, Angiotensin-converting enzyme 2 is a functional receptor for the SARS coronavirus. Nature 426, 450– 454 (2003). 10.1038/nature02145 14647384 PMC7095016 source
Not checked in the free run.
- cites [24] W. Li, T. C. Greenough, M. J. Moore, N. Vasilieva, M. Somasundaran, J. L. Sullivan, M. Farzan, H. Choe, Efficient replication of severe acute respiratory syndrome coronavirus in mouse cells is limited by murine angiotensin-converting enzyme 2. J. Virol. 78, 11429– 11433 (2004). 10.1128/JVI.78.20.11429-11433.2004 15452268 PMC521845
Not checked in the free run.
- cites [25] K. Kuba, Y. Imai, S. Rao, H. Gao, F. Guo, B. Guan, Y. Huan, P. Yang, Y. Zhang, W. Deng, L. Bao, B. Zhang, G. Liu, Z. Wang, M. Chappell, Y. Liu, D. Zheng, A. Leibbrandt, T. Wada, A. S. Slutsky, D. Liu, C. Qin, C. Jiang, J. M. Penninger, A crucial role of angiotensin converting enzyme 2 (ACE2) in SARS coronavirus-induced lung injury. Nat. Med. 11, 875– 879 (2005). 10.1038/nm1267 16007097 PMC7095783 source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationBasal progenitor populations with transcriptional profiles similar to rodent globose and horizontal basal cells are present in adult human olfactory epithelium, suggesting closely related homeostatic and injury-response mechanisms.
“basal progenitor populations with similar transcriptional profiles are present in adult human olfactory epithelium, suggesting closely related homeostatic and injury-response mechanisms (37, 38).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [37] J. E. Schwob, W. Jang, E. H. Holbrook, B. Lin, D. B. Herrick, J. N. Peterson, J. Hewitt Coleman, Stem and progenitor cells of the mammalian olfactory epithelium: Taking poietic license. J. Comp. Neurol. 525, 1034– 1054 (2017). 10.1002/cne.24105 27560601 PMC5805156
Not checked in the free run.
- cites [38] M. A. Durante, S. Kurtenbach, Z. B. Sargi, J. W. Harbour, R. Choi, S. Kurtenbach, G. M. Goss, H. Matsunami, B. J. Goldstein, Single-cell analysis of olfactory neurogenesis and differentiation in adult humans. Nat. Neurosci. 23, 323– 326 (2020). 10.1038/s41593-020-0587-9 32066986 PMC7065961
Not checked in the free run.
Classified as probably not a substantial claim.
PremisecitationThe nasal respiratory epithelium has higher expression of CoV-2 entry genes than the respiratory epithelium that lines the trachea or lungs.
“It was recently reported that the nasal RE has higher expression of CoV-2 entry genes than the RE that lines the trachea or lungs (44)”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [44] W. Sungnak, N. Huang, C. Bécavin, M. Berg, H. C. A. L. B. Network, SARS-CoV-2 entry genes are most highly expressed in nasal goblet and ciliated cells within human airways. arXiv preprint arXiv:2003.06122, (2020).
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationCells from the human upper airway, including nasal respiratory epithelium goblet and ciliated cells, express high levels of ACE2 and TMPRSS2, suggesting these respiratory epithelium cell types may serve as a viral reservoir during CoV-2 infection.
“It has recently been demonstrated through single cell RNA sequencing analysis (referred to herein as scSeq) that cells from the human upper airway — including nasal RE goblet and ciliated cells —express high levels of ACE2 and TMPRSS2, suggesting that these RE cell types may serve as a viral reservoir during CoV-2 infection (39, 40).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [39] W. Sungnak, N. Huang, C. Bécavin, M. Berg, R. Queen, M. Litvinukova, C. Talavera-López, H. Maatz, D. Reichart, F. Sampaziotis, K. B. Worlock, M. Yoshida, J. L. Barnes; HCA Lung Biological Network, SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes. Nat. Med. 26, 681– 687 (2020). 10.1038/s41591-020-0868-6 32327758 PMC8637938 source
Not checked in the free run.
- cites [40] Y. J. Hou, K. Okuda, C. E. Edwards, D. R. Martinez, T. Asakura, K. H. Dinnon 3rd, T. Kato, R. E. Lee, B. L. Yount, T. M. Mascenik, G. Chen, K. N. Olivier, A. Ghio, L. V. Tse, S. R. Leist, L. E. Gralinski, A. Schäfer, H. Dang, R. Gilmore, S. Nakano, L. Sun, M. L. Fulcher, A. Livraghi-Butrico, N. I. Nicely, M. Cameron, C. Cameron, D. J. Kelvin, A. de Silva, D. M. Margolis, A. Markmann, L. Bartelt, R. Zumwalt, F. J. Martinez, S. P. Salvatore, A. Borczuk, P. R. Tata, V. Sontake, A. Kimple, I. Jaspers, W. K. O’Neal, S. H. Randell, R. C. Boucher, R. S. Baric, SARS-CoV-2 Reverse Genetics Reveals a Va source
Not checked in the free run.
May combine two claims.
PremisecitationRecent findings in respiratory epithelium suggest scSeq substantially underestimates the fraction of a given cell type that expresses the Ace2 transcript, but new Ace2-expressing cell types are not discovered with more sensitive forms of analysis.
“These observations are consistent with recent findings in the respiratory epithelium suggesting that scSeq substantially underestimates the fraction of a given cell type that expresses the Ace2 transcript, but that “new” Ace2-expressing cell types are not discovered with more sensitive forms of analysis (40).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [40] Y. J. Hou, K. Okuda, C. E. Edwards, D. R. Martinez, T. Asakura, K. H. Dinnon 3rd, T. Kato, R. E. Lee, B. L. Yount, T. M. Mascenik, G. Chen, K. N. Olivier, A. Ghio, L. V. Tse, S. R. Leist, L. E. Gralinski, A. Schäfer, H. Dang, R. Gilmore, S. Nakano, L. Sun, M. L. Fulcher, A. Livraghi-Butrico, N. I. Nicely, M. Cameron, C. Cameron, D. J. Kelvin, A. de Silva, D. M. Margolis, A. Markmann, L. Bartelt, R. Zumwalt, F. J. Martinez, S. P. Salvatore, A. Borczuk, P. R. Tata, V. Sontake, A. Kimple, I. Jaspers, W. K. O’Neal, S. H. Randell, R. C. Boucher, R. S. Baric, SARS-CoV-2 Reverse Genetics Reveals a Va source
Not checked in the free run.
May combine two claims.
PremisecitationMany viruses, including coronaviruses, propagate from nasal epithelium past cribriform plate to infect olfactory bulb; this central infection has been suggested to mediate olfactory deficits even without lasting olfactory epithelium damage.
“Many viruses, including coronaviruses, have been shown to propagate from the nasal epithelium past the cribriform plate to infect the OB; this form of central infection has been suggested to mediate olfactory deficits, even in the absence of lasting OE damage (60-65).”
Quote in the paperSubstantial claim0 of 6 sources checked- cites [60] K. Bohmwald, N. M. S. Gálvez, M. Ríos, A. M. Kalergis, Neurologic Alterations Due to Respiratory Virus Infections. Front. Cell. Neurosci. 12, 386 (2018). 10.3389/fncel.2018.00386 30416428 PMC6212673 source
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- cites [61] S. L. Youngentob, J. E. Schwob, S. Saha, G. Manglapus, B. Jubelt, Functional consequences following infection of the olfactory system by intranasal infusion of the olfactory bulb line variant (OBLV) of mouse hepatitis strain JHM. Chem. Senses 26, 953– 963 (2001). 10.1093/chemse/26.8.953 11595672 PMC7110209
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- cites [62] R. L. Doty, Systemic diseases and disorders. Handb. Clin. Neurol. 164, 361– 387 (2019). 10.1016/B978-0-444-63855-7.00021-6 31604558
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- cites [63] E. M. Barnett, S. Perlman, The olfactory nerve and not the trigeminal nerve is the major site of CNS entry for mouse hepatitis virus, strain JHM. Virology 194, 185– 191 (1993). 10.1006/viro.1993.1248 8386871
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- cites [64] J. E. Schwob, S. Saha, S. L. Youngentob, B. Jubelt, Intranasal inoculation with the olfactory bulb line variant of mouse hepatitis virus causes extensive destruction of the olfactory bulb and accelerated turnover of neurons in the olfactory epithelium of mice. Chem. Senses 26, 937– 952 (2001). 10.1093/chemse/26.8.937 11595671 PMC7110028
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- cites [65] J. Netland, D. K. Meyerholz, S. Moore, M. Cassell, S. Perlman, Severe acute respiratory syndrome coronavirus infection causes neuronal death in the absence of encephalitis in mice transgenic for human ACE2. J. Virol. 82, 7264– 7275 (2008). 10.1128/JVI.00737-08 18495771 PMC2493326 source
Not checked in the free run.
May combine two claims.
PremisecitationTwo recent studies in mouse models expressing human ACE2 found CoV-2 in brain after intranasal inoculation, although neither specifically queried olfactory bulb.
“Additionally, two recent studies in mouse models expressing human ACE2 have found CoV-2 in the brain after intranasal inoculation (67, 68), although neither specifically queried the OB; this work stands in contrast to results in a non-human primate model of COVID-19, in which nasal infection did not lead to the presence of identifiable CoV-2 antigens in the brain (83).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [67] R.-D. Jiang, M.-Q. Liu, Y. Chen, C. Shan, Y.-W. Zhou, X.-R. Shen, Q. Li, L. Zhang, Y. Zhu, H.-R. Si, Q. Wang, J. Min, X. Wang, W. Zhang, B. Li, H.-J. Zhang, R. S. Baric, P. Zhou, X.-L. Yang, Z.-L. Shi, Pathogenesis of SARS-CoV-2 in transgenic mice expressing human angiotensin-converting enzyme 2. Cell 182, 50– 58.e8 (2020). 10.1016/j.cell.2020.05.027 32516571 PMC7241398
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- cites [68] S.-H. Sun, Q. Chen, H.-J. Gu, G. Yang, Y.-X. Wang, X.-Y. Huang, S.-S. Liu, N.-N. Zhang, X.-F. Li, R. Xiong, Y. Guo, Y.-Q. Deng, W.-J. Huang, Q. Liu, Q.-M. Liu, Y.-L. Shen, Y. Zhou, X. Yang, T.-Y. Zhao, C.-F. Fan, Y.-S. Zhou, C.-F. Qin, Y.-C. Wang, A mouse model of SARS-CoV-2 infection and pathogenesis. Cell Host Microbe 28, 124– 133.e4 (2020). 10.1016/j.chom.2020.05.020 32485164 PMC7250783
Not checked in the free run.
Probably not a substantial claim: may not pass S4 (based).
InterpretationreasoningVascular pericytes in cranial nerve I also express ACE2.
“Although CN I was not directly queried in our datasets, it is reasonable to infer that vascular pericytes in CN I also express ACE2, which suggests a possible route of entry for CoV-2 from the nose into the brain.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationInfection of subsets of sustentacular cells by SDAV coronavirus in rats leads to disruption of global architecture of olfactory epithelium, suggesting focal coronavirus infection may be sufficient to cause diffuse epithelial damage.
“For example, infection of subsets of sustentacular cells by the SDAV coronavirus in rats ultimately leads to disruption of the global architecture of the OE, suggesting that focal coronavirus infection may be sufficient to cause diffuse epithelial damage (56).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [56] C. G. Bihun, D. H. Percy, Morphologic changes in the nasal cavity associated with sialodacryoadenitis virus infection in the Wistar rat. Vet. Pathol. 32, 1– 10 (1995). 10.1177/030098589503200101 7725592
Not checked in the free run.
May combine two claims.
InterpretationreasoningGiven the similarities in ACE2 and TMPRSS2 expression patterns between mouse and human, mouse findings suggest that olfactory bulb neurons are likely not a primary site of infection, but that vascular pericytes may be sensitive to CoV-2.
“Given the extensive similarities detailed above in expression patterns for ACE2 and TMPRSS2 in the mouse and human, these findings (from mouse experiments) suggest that OB neurons are likely not a primary site of infection, but that vascular pericytes may be sensitive to CoV-2”
Quote in the paperSubstantial claim- Rests on an assumption: Cells expressing ACE2 and TMPRSS2 are susceptible to SARS-CoV-2 infection, or such expression is sufficient for viral entry.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationLow level expression of ACE2 can support CoV-2 cell entry.
“In addition, it has recently been reported that low level expression of ACE2 can support CoV-2 cell entry (86); it is possible, therefore, that ACE2 expression beneath the level of detection in our assays may yet enable CoV-2 infection of apparently ACE2 negative cell types.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [86] M. M. Lamers, SARS-CoV-2 productively infects human gut enterocytes. Science, eabc1669 (2020). PMC7199907 32358202 source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationSARS-CoV has been shown to infect olfactory bulb in a transgenic mouse model ectopically expressing human ACE2.
“Although SARS-CoV has been shown to infect the OB in a transgenic mouse model that ectopically expresses human ACE2 (65), it is unclear to what extent similar results will be observed for CoV-2 in these and in recently-developed mouse models expressing human ACE2 that better recapitulate native expression patterns (67-69).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [65] J. Netland, D. K. Meyerholz, S. Moore, M. Cassell, S. Perlman, Severe acute respiratory syndrome coronavirus infection causes neuronal death in the absence of encephalitis in mice transgenic for human ACE2. J. Virol. 82, 7264– 7275 (2008). 10.1128/JVI.00737-08 18495771 PMC2493326 source
Not checked in the free run.
May combine two claims.
Interpretationown dataActivated stem cells recruited during injury express ACE2 and do so at higher levels than resting stem cells.
“These results demonstrate that activated stem cells recruited during injury express ACE2 and do so at higher levels than those in resting stem cells.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationTwo anosmic COVID-19 patients had fMRI-identified hyperintensity in both olfactory bulbs that reverted to normal after resolution of anosmia, consistent with central involvement in at least some cases.
“Two anosmic COVID-19 patients have presented with fMRI-identified hyperintensity in both OBs that reverted to normal after resolution of the anosmia (58, 59), consistent with central involvement in at least some cases.”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [58] L. S. Politi, E. Salsano, M. Grimaldi, Magnetic Resonance Imaging Alteration of the Brain in a Patient With Coronavirus Disease 2019 (COVID-19) and Anosmia. JAMA Neurology, (2020). 32469400 source
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- cites [59] T. Laurendon, T. Radulesco, J. Mugnier, M. Gérault, C. Chagnaud, A.-A. El Ahmadi, A. Varoquaux, Bilateral transient olfactory bulbs edema during COVID-19-related anosmia. Neurology 10.1212/WNL.0000000000009850 (2020). 10.1212/WNL.0000000000009850 32444492
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Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataIn the WOM dataset, 281 cells containing mixtures of marker genes with no clear gene expression signature were removed.
“We removed 281 cells containing mixtures of marker genes with no clear gene expression signature.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenMouse Drop-seq cells with less than 500 UMIs or more than 15,000 UMIs, or higher than 5% mitochondrial genes were removed.
“Cells with less than 500 UMIs or more than 15,000 UMIs, or higher than 5% mitochondrial genes were removed.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenIn the manually sorted olfactory bulb dopaminergic neuron dataset, the scTransform function in Seurat was used to remove technical batch effects.
“The scTransform function in Seurat was used to remove technical batch effects.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataFour clusters were removed for quality control, including two with low total counts and two with high mitochondrial counts.
“Four clusters were removed for quality control, including two with low total counts (likely background) and two with high mitochondrial counts (likely stressed or dying cells).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationThe whole olfactory bulb clusters corresponded to previous cell class and subtype annotations.
“the clusters corresponded previous cell class and subtype annotations (50).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [50] A. Zeisel, H. Hochgerner, P. Lönnerberg, A. Johnsson, F. Memic, J. van der Zwan, M. Häring, E. Braun, L. E. Borm, G. La Manno, S. Codeluppi, A. Furlan, K. Lee, N. Skene, K. D. Harris, J. Hjerling-Leffler, E. Arenas, P. Ernfors, U. Marklund, S. Linnarsson, Molecular Architecture of the Mouse Nervous System. Cell 174, 999– 1014.e22 (2018). 10.1016/j.cell.2018.06.021 30096314 PMC6086934 source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenIn the manually sorted olfactory bulb dopaminergic neuron dataset, positive and negative controls were collected for each sorting session.
“Positive (more than 10 cells) and negative (sample collection procedure without picking a cell) controls were collected for each sorting session.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
InterpretationcitationACE2 expression beneath the level of detection in our assays may enable CoV-2 infection of apparently ACE2 negative cell types.
“In addition, it has recently been reported that low level expression of ACE2 can support CoV-2 cell entry (86); it is possible, therefore, that ACE2 expression beneath the level of detection in our assays may yet enable CoV-2 infection of apparently ACE2 negative cell types.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenIn the adult whole olfactory bulb Drop-seq dataset, cells with low numbers of genes (500), low numbers of UMIs (700) or high numbers of UMIs (>10000) were removed (6% of cells).
“Cells with low numbers of genes (500), low numbers of UMIs (700) or high numbers of UMIs (>10000) were removed (6% of cells).”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
Study design and conductnone givenOnly cell-type correspondences with a high Z-score in both mapping directions (Z-score > 25) were used for downstream analysis.
“Only cell-type correspondences with a high Z-score in both mapping directions (Z-score > 25) were used for downstream analysis.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe population of olfactory bulb cells labeled in DAT-tdTomato mice includes a minor non-dopaminergic calretinin-positive subgroup.
“The population of olfactory bulb cells labeled in DAT-tdTomato mice is known to include a minor non-dopaminergic calretinin-positive subgroup (113)”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [113] J. Ninkovic, L. Pinto, S. Petricca, A. Lepier, J. Sun, M. A. Rieger, T. Schroeder, A. Cvekl, J. Favor, M. Götz, The transcription factor Pax6 regulates survival of dopaminergic olfactory bulb neurons via crystallin αA. Neuron 68, 682– 694 (2010). 10.1016/j.neuron.2010.09.030 21092858 PMC4388427
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
InterpretationcitationOur survey of ACE2 expression might under-represent cell types that express ACE2 under conditions of CoV-2 infection.
“Finally, it has recently been reported that inflammation can induce expression of ACE2 in human cells (87, 88). It is therefore possible that our survey of ACE2 expression, and other recent reports demonstrating expression of ACE2 in OE support and stem cells but not neurons (81, 89, 90), might under-represent the cell types that express ACE2 under conditions of CoV-2 infection.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationCluster stability for the integrated whole olfactory bulb dataset was analyzed with Clustree on a range of resolution values (0.4 to 1.4), with 0.6 yielding the most stable set of clusters.
“Cluster stability was analyzed with Clustree on a range of resolution values (0.4 to 1.4), with 0.6 yielding the most stable set of clusters (107).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [107] L. Zappia, A. Oshlack, Clustering trees: A visualization for evaluating clusterings at multiple resolutions. Gigascience 7, (2018). 10.1093/gigascience/giy083 30010766 PMC6057528 source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataIn the HBC lineage tracing dataset, 219 cells whose experimentally sampled timepoint did not match their position along the HBC differentiation trajectory were removed.
“Inspection of the data in a three-dimensional UMAP embedding identified two groups of cells whose experimentally sampled timepoint did not match their position along the HBC differentiation trajectory, and these additional 219 cells were also removed from subsequent analyses.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationInflammation can induce expression of ACE2 in human cells.
“Finally, it has recently been reported that inflammation can induce expression of ACE2 in human cells (87, 88). It is therefore possible that our survey of ACE2 expression, and other recent reports demonstrating expression of ACE2 in OE support and stem cells but not neurons (81, 89, 90), might under-represent the cell types that express ACE2 under conditions of CoV-2 infection.”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [87] C. G. K. Ziegler, S. J. Allon, S. K. Nyquist, I. M. Mbano, V. N. Miao, C. N. Tzouanas, Y. Cao, A. S. Yousif, J. Bals, B. M. Hauser, J. Feldman, C. Muus, M. H. Wadsworth 2nd, S. W. Kazer, T. K. Hughes, B. Doran, G. J. Gatter, M. Vukovic, F. Taliaferro, B. E. Mead, Z. Guo, J. P. Wang, D. Gras, M. Plaisant, M. Ansari, I. Angelidis, H. Adler, J. M. S. Sucre, C. J. Taylor, B. Lin, A. Waghray, V. Mitsialis, D. F. Dwyer, K. M. Buchheit, J. A. Boyce, N. A. Barrett, T. M. Laidlaw, S. L. Carroll, L. Colonna, V. Tkachev, C. W. Peterson, A. Yu, H. B. Zheng, H. P. Gideon, C. G. Winchell, P. L. Lin, C. D. B source
Not checked in the free run.
- cites [88] S. P. Sajuthi et al., Type 2 and interferon inflammation strongly regulate SARS-CoV-2 related gene expression in the airway epithelium. bioRxiv, 034454 10 April 2020. PMC7550582 33046696
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductown dataThe integration of juvenile and adult whole olfactory bulb scRNAseq datasets yielded stable clusters with cells from both datasets, although some cell types were observed with different frequencies.
“although some cell types were observed with different frequencies, the integration procedure yielded stable clusters with cells from both datasets.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationDoublet cell detection was performed per sample using DoubletFinder and Scrublet for both datasets.
“For both datasets, doublet cell detection was performed per sample using DoubletFinder (100) and Scrublet (101).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [100] C. S. McGinnis, L. M. Murrow, Z. J. Gartner, DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors. Cell Syst. 8, 329– 337.e4 (2019). 10.1016/j.cels.2019.03.003 30954475 PMC6853612 source
Not checked in the free run.
- cites [101] S. L. Wolock, R. Lopez, A. M. Klein, Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data. Cell Syst. 8, 281– 291.e9 (2019). 10.1016/j.cels.2018.11.005 30954476 PMC6625319 source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationIn the manually sorted olfactory bulb dopaminergic neuron dataset, cell-level quality control and filtering was performed in scater.
“Cell level quality control and cell filtering was performed in scater (112).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [112] D. J. McCarthy, K. R. Campbell, A. T. Lun, Q. F. Wills, Scater: Pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R. Bioinformatics 33, 1179– 1186 (2017). 10.1093/bioinformatics/btw777 28088763 PMC5408845 source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationPCA-batch-correction was performed using Patient 4 as a reference.
“PCA-batch-correction was performed using Patient 4 as a reference, as previously described (93).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [93] C. Weinreb, A. Rodriguez-Fraticelli, F. D. Camargo, A. M. Klein, Lineage tracing on transcriptional landscapes links state to fate during differentiation. Science 367, eaaw3381 (2020). 10.1126/science.aaw3381 31974159 PMC7608074 source
Not checked in the free run.
Classified as probably not a substantial claim.
Study design and conductreasoningIn the manually sorted olfactory bulb dopaminergic neuron dataset, calretinin-expressing cells were excluded from all analyses.
“so calretinin-expressing cells were excluded from all analyses.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataThe distribution of cells from each whole olfactory bulb dataset across clusters was homogenous.
“the distribution of cells from each dataset across clusters was homogenous (Figure S7)”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataIn the HBC lineage tracing dataset, 271 putative doublets were removed.
“Doublets were identified using DoubletFinder and 271 putative doublets were removed.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataEach of the 16 clusters identified contained cells from all 8 replicates in roughly equal proportions.
“Each of the 16 clusters identified contained cells from all 8 replicates in roughly equal proportions.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataIn the adult whole olfactory bulb Drop-seq dataset, potential doublets were identified via Scrublet and removed (3.5% of cells).
“Potential doublets were identified via Scrublet and removed (3.5% of cells).”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationSmell loss in COVID-19 can be sudden and precede development of other symptoms.
“Any reasonable pathophysiological mechanism for COVID-19-associated anosmia must account for the high penetrance of smell disorders relative to endemic viruses (12, 91, 92), the apparent suddenness of smell loss that can precede the development of other symptoms (11, 13), and the transient nature of dysfunction in many patients (11, 17, 18); definitive identification of the disease mechanisms”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [11] J. R. Lechien, C. M. Chiesa-Estomba, D. R. De Siati, M. Horoi, S. D. Le Bon, A. Rodriguez, D. Dequanter, S. Blecic, F. El Afia, L. Distinguin, Y. Chekkoury-Idrissi, S. Hans, I. L. Delgado, C. Calvo-Henriquez, P. Lavigne, C. Falanga, M. R. Barillari, G. Cammaroto, M. Khalife, P. Leich, C. Souchay, C. Rossi, F. Journe, J. Hsieh, M. Edjlali, R. Carlier, L. Ris, A. Lovato, C. De Filippis, F. Coppee, N. Fakhry, T. Ayad, S. Saussez, Olfactory and gustatory dysfunctions as a clinical presentation of mild-to-moderate forms of the coronavirus disease (COVID-19): A multicenter European study. Eur. Arch. source
Not checked in the free run.
- cites [13] G. Spinato, C. Fabbris, J. Polesel, D. Cazzador, D. Borsetto, C. Hopkins, P. Boscolo-Rizzo, Alterations in Smell or Taste in Mildly Symptomatic Outpatients With SARS-CoV-2 Infection. JAMA 323, 2089 (2020). 10.1001/jama.2020.6771 32320008 PMC7177631
Not checked in the free run.
Classified as probably not a substantial claim.
Study design and conductcitationTuj1 antibody was validated as previously described.
“The Tuj1 antibody was validated, as previously described (38).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [38] M. A. Durante, S. Kurtenbach, Z. B. Sargi, J. W. Harbour, R. Choi, S. Kurtenbach, G. M. Goss, H. Matsunami, B. J. Goldstein, Single-cell analysis of olfactory neurogenesis and differentiation in adult humans. Nat. Neurosci. 23, 323– 326 (2020). 10.1038/s41593-020-0587-9 32066986 PMC7065961
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataPutative doublets were identified using Scrublet and removed (7% of cells).
“Putative doublets were also identified using Scrublet and removed (7% of cells).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataIn the manually sorted olfactory bulb dopaminergic neuron dataset, less than 2.5 hours elapsed between mouse sacrifice and collection of the last cell in any session.
“Overall, less than 2.5 hours elapsed between mouse sacrifice and collection of the last cell in any session.”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
Study design and conductnone givenHuman olfactory mucosa biopsies were obtained via IRB-approved protocol at Duke University School of Medicine.
“Human olfactory mucosa biopsies were obtained via IRB-approved protocol at Duke University School of Medicine, from nasal septum or superior turbinate during endoscopic sinus surgery.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationIn the analysis of scSeq datasets from various brain regions and sensory systems, inspection of all datasets for batch effects was performed using the scater package.
“Inspection of all datasets for batch effects was performed using the scater package (version 1.10.1) (112).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [112] D. J. McCarthy, K. R. Campbell, A. T. Lun, Q. F. Wills, Scater: Pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R. Bioinformatics 33, 1179– 1186 (2017). 10.1093/bioinformatics/btw777 28088763 PMC5408845 source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataCells with co-expression of male and female marker genes were removed as potential doublets from the WOM dataset.
“Cells with co-expression of male (Ddx3y, Eif2s3y, Kdm5d, and Uty) and female marker genes (Xist) were removed as potential doublets from the WOM dataset.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenPotential doublets were removed using Scrublet.
“Potential doublets were removed using Scrublet.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataMapping Z-scores were highly robust upon varying the number of votes-cast per cell (R>0.98 correlation upon changing vote numbers to 1 or 50 as opposed to 5).
“The mapping Z-scores were also highly robust upon varying the number of votes-cast per cell (R>0.98 correlation of mapping Z-scores upon changing the vote numbers to 1 or 50 as opposed to 5).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataMapping Z-scores were similar between the two possible mapping directions (R=0.87 Pearson correlation).
“The resulting Z-scores were similar between the two possible mapping directions (Durante -> Deprez vs. Deprez -> Durante; R=0.87 Pearson correlation of mapping Z-scores).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenIn the manually sorted olfactory bulb dopaminergic neuron dataset, cells with <1000 genes, <100,000 reads, >75% reads mapping to ERCC spike-ins, >10% reads mapping to mitochondrial genes or low library complexity were discarded (14% samples).
“Cells with <1000 genes, <100,000 reads, >75% reads mapping to ERCC spike-ins, >10% reads mapping to mitochondrial genes or low library complexity were discarded (14% samples).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone given10x Genomics mtx files were filtered to remove any cells with fewer than 500 total counts.
“10x Genomics mtx files were filtered to remove any cells with fewer than 500 total counts.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataClustering the two whole olfactory bulb datasets separately yielded similar results.
“Clustering the two datasets separately yielded similar results.”
Quote in the paperNot a substantial claim
The paper relies on this without support.
Cells expressing ACE2 and TMPRSS2 are susceptible to SARS-CoV-2 infection, or such expression is sufficient for viral entry.
“These findings suggest that CoV-2 infection of non-neuronal cell types leads to anosmia and related disturbances in odor perception in COVID-19 patients.”
The paper relies on this without support.
Infection of non-neuronal cells in the olfactory epithelium or olfactory bulb causes anosmia and related disturbances in odor perception in COVID-19 patients.
“Thus primary infection of non-neuronal cell types — rather than sensory or bulb neurons — may be responsible for anosmia and related disturbances in odor perception in COVID-19 patients.”
The paper relies on this without support.
Cells expressing CoV-2 entry genes are susceptible to CoV-2 infection.
“The identification of non-neuronal cell types in the OE and OB susceptible to CoV-2 infection suggests four possible, non-mutually-exclusive mechanisms for the acute loss of smell reported in COVID-19 patients.”
The authors state this as an assumption.
All mice used were of normal immune status.
“All mice were assumed to be of normal immune status.”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Human olfactory sensory neurons do not express ACE2 and TMPRSS2 but express CD147 that could allow SARS-CoV-2 neuroinvasion.
“Although current literature data reports that human olfactory sensory neurons do not express these proteins, they express CD147 that could allow SARS-CoV-2 neuroinvasion (Fig. 1) [33, 34].”
From Hyperactivation of P2X7 receptors as a culprit of COVID-19 neuropathology (2021) · cites this paper as [34]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
Human OSN TMPRSS2 detection is reported inconsistently
MinorThe figure caption says TMPRSS2 was detected in neither immature nor mature OSNs, whereas the methods report detection in two cells among those populations.
“Neither ACE2 nor TMPRSS2 are detected in either population of OSNs.”
“Of the 865 identified OSNs, including both immature and mature cells, none of the cells express ACE2 and only 2 (0.23%) expressed TMPRSS2.”
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Neuropsychiatric Complications of COVID-19
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Predictive value of sudden olfactory loss in the diagnosis of COVID-19
Haehner, A., Draf, J., Dräger, S., With, K. D., & Hummel, T. (2020) · doi:10.1101/2020.04.27.20081356 · Cited by 146 · see citing works
Infectability of Human BrainSphere Neurons Suggests Neurotropism of SARS-CoV-2*
Bullen, C. K. (2020) · ALTEX · doi:10.14573/altex.2006111 · Cited by 146 · see citing works
Hyperactivation of P2X7 receptors as a culprit of COVID-19 neuropathology
Ribeiro, D. E., Oliveira-Giacomelli, Á., Glaser, T., Arnaud-Sampaio, V. F., Andrejew, R., Dieckmann, L., Baranova, J., Lameu, C., Ratajczak, M. Z., & Ulrich, H. (2021) · Molecular Psychiatry · doi:10.1038/s41380-020-00965-3 · Cited by 145 · see citing works
SARS-CoV-2 and nervous system: From pathogenesis to clinical manifestation
Keyhanian, K., Umeton, R. P., Mohit, B., Davoudi, V., Hajighasemi, F., & Ghasemi, M. (2020) · Journal of Neuroimmunology · doi:10.1016/j.jneuroim.2020.577436 · Cited by 143 · see citing works
Smell and taste disorders in COVID-19: From pathogenesis to clinical features and outcomes
Mastrángelo, A., Bonato, M., & Cinque, P. M. (2021) · Neuroscience Letters · doi:10.1016/j.neulet.2021.135694 · Cited by 139 · see citing works
Anosmia in COVID-19: Mechanisms and Significance
Han, A. Y., Mukdad, L. A., Long, J. L., & López, I. A. (2020) · Chemical Senses · doi:10.1093/chemse/bjaa040 · Cited by 136 · see citing works
COVID-19 and Alzheimer’s disease: how one crisis worsens the other
Xia, X., Wang, Y., & Zheng, J. (2021) · Translational Neurodegeneration · doi:10.1186/s40035-021-00237-2 · Cited by 136 · see citing works
ACE2: the molecular doorway to SARS-CoV-2
Medina-Enríquez, M. M., López‐León, S., Carlos-Escalante, J. A., Torres, Z. A., Cuapio, A., & Wegman-Ostrosky, T. (2020) · Cell & Bioscience · doi:10.1186/s13578-020-00519-8 · Cited by 134 · see citing works
King, R. G., Silva-Sánchez, A., Peel, J. N., Botta, D., Dickson, A. M., Pinto, A. K., Meza‐Perez, S., Allie, S. R., Schultz, M. D., Liu, M., et al. (2021) · Vaccines · doi:10.3390/vaccines9080881 · Cited by 133 · see citing works
Biering, S. B., Sarnik, S. A., Wang, E., Zengel, J. R., Leist, S. R., Schäfer, A., Sathyan, V., Hawkins, P., Okuda, K., Tau, C., et al. (2022) · Nature Genetics · doi:10.1038/s41588-022-01131-x · Cited by 133 · see citing works
International consensus statement on allergy and rhinology: Olfaction
Patel, Z., Holbrook, E., Turner, J., Adappa, N., Albers, M. W., Altundağ, A., Appenzeller, S., Costanzo, R., Croy, I., Davis, G. E., et al. (2022) · International Forum of Allergy and Rhinology · doi:10.1002/alr.22929 · Cited by 119 · see citing works
Self-citationInfectivity of human coronavirus in the brain
Cheng, Q., Yang, Y., & Gao, J. (2020) · EBioMedicine · doi:10.1016/j.ebiom.2020.102799 · Cited by 130 · see citing works
Six-Month Psychophysical Evaluation of Olfactory Dysfunction in Patients with COVID-19
Boscolo‐Rizzo, P., Menegaldo, A., Fabbris, C., Spinato, G., Borsetto, D., Vaira, L. A., Calvanese, L., Pettorelli, A., Sonego, M., Frezza, D., et al. (2021) · Chemical Senses · doi:10.1093/chemse/bjab006 · Cited by 129 · see citing works
SARS-CoV-2 and the COVID-19 disease: a mini review on diagnostic methods
Oliveira, B. A., de Oliveira, L. C., Sabino, É. C., & Okay, T. S. (2020) · Revista do Instituto de Medicina Tropical de São Paulo · doi:10.1590/s1678-9946202062044 · Cited by 128 · see citing works
Olfactory dysfunction in COVID-19: new insights into the underlying mechanisms
Butowt, R., Bilińska, K., & von Bartheld, C. S. (2022) · Trends in Neurosciences · doi:10.1016/j.tins.2022.11.003 · Cited by 127 · see citing works
Unraveling the Possible Routes of SARS-COV-2 Invasion into the Central Nervous System
Lima, M., Siokas, V., Aloizou, A., Liampas, I., Mentis, A. A., Tsouris, Z., Papadimitriou, A., Mitsias, P. D., Tsatsakis, A. M., Bogdanos, D. P., et al. (2020) · Current Treatment Options in Neurology · doi:10.1007/s11940-020-00647-z · Cited by 126 · see citing works
Mutiawati, E., Fahriani, M., Mamada, S. S., Fajar, J. K., Frediansyah, A., Maliga, H. A., Ilmawan, M., Emran, T. B., Ophinni, Y., Ichsan, I., et al. (2021) · F1000Research · doi:10.12688/f1000research.28393.1 · Cited by 126 · see citing works
COVID-19 and cognitive impairment: neuroinvasive and blood‒brain barrier dysfunction
Chen, Y., Yang, W., Chen, F., & Cui, L. (2022) · Journal of Neuroinflammation · doi:10.1186/s12974-022-02579-8 · Cited by 124 · see citing works
The UGT2A1/UGT2A2 locus is associated with COVID-19-related loss of smell or taste
Shelton, J. F., Shastri, A. J., Fletez‐Brant, K., The 23andMe COVID-19 Team, Auton, A., Chubb, A., Fitch, A., Kung, A., Altman, A., Kill, A., et al. (2022) · Nature Genetics · doi:10.1038/s41588-021-00986-w · Cited by 123 · see citing works
Butowt, R., Meunier, N., Bryche, B., & von Bartheld, C. S. (2021) · Acta Neuropathologica · doi:10.1007/s00401-021-02314-2 · Cited by 122 · see citing works
- Authors
- Brann, D. H., Tsukahara, T., Weinreb, C., Lipovsek, M., Van den Berge, K., Gong, B., Chance, R., Macaulay, I. C., Chou, H.-J., Fletcher, R. B., Das, D., Street, K., de Bezieux, H. R., Choi, Y.-G., Risso, D., Dudoit, S., Purdom, E., Mill, J., Hachem, R. A., Matsunami, H., Logan, D. W., Goldstein, B. J., Grubb, M. S., Ngai, J., & Datta, S. R.
- Affiliations
- Harvard University (US)
- King's College London (GB)
- Department of Statistics, University of California, Berkeley, CA 94720
- University of California, Berkeley (US)
- Norwich Research Park (GB)
- Surrozen, Inc. (United States) (US)
- Genentech (US)
- Division of Biostatistics, School of Public Health, University of California, Berkeley, CA 94720
- University of Padua (IT)
- University of Exeter (GB)
- Duke University (US)
- Waltham Petcare Science Institute, Leicestershire LE14 4RT, UK.
- National Institutes of Health (US)
- Corresponding author
- Brann, David H.
- Tsukahara, Tatsuya
- Weinreb, Caleb
- Datta, Sandeep Robert
- ORCID
- Brann, David H.
- Tsukahara, Tatsuya
- Weinreb, Caleb
- Lipovsek, Marcela
- Gong, Boying
- Chance, Rebecca
- Macaulay, Iain C.
- Chou, Hsin-Jung
- Fletcher, Russell B.
- Das, Diya
- Street, Kelly
- de Bezieux, Hector Roux
- Risso, Davide
- Dudoit, Sandrine
- Purdom, Elizabeth
- Mill, Jonathan
- Hachem, Ralph Abi
- Matsunami, Hiroaki
- Logan, Darren W.
- Goldstein, Bradley J.
- Grubb, Matthew S.
- Ngai, John
- Datta, Sandeep Robert
- Venue
- Science Advances
- Published
- 2020-07-31
- Volume
- 6
- Issue
- 31
- ISSN
- 2375-2548 (ISSN-L)
- PMC
- PMC10715684
- OpenAlex
- W3044382958
- Semantic Scholar
- d1e4a11b05a2afeca86ff027d707ab24a63f6c96
- Cited by
- 1,198
- References
- 128
- Citations by year
- 2026: 43 · 2025: 52 · 2024: 97 · 2023: 163 · 2022: 267 · 2021: 345 · 2020: 229 · 2018: 2
- FWCI
- 88.36
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Science Advances (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- Ghent University Academic Bibliography (Ghent University) (submittedVersion, cc-by)
- Padua Research Archive (University of Padova) (submittedVersion, cc-by-nc)
- eScholarship (California Digital Library) (submittedVersion)
- Research Portal (King's College London) (submittedVersion, cc-by)
- Royal Devon and Exeter Research Repository (Royal Devon and Exeter) (submittedVersion, cc-by)
- UEA Digital Repository (University of East Anglia) (submittedVersion)
- INFM-OAR (INFN Catania) (submittedVersion, cc-by)
- Zenodo (CERN European Organization for Nuclear Research) (cc-by)
- Funders
- National Institutes of Health (RO11DC016222, U19NS112953, RO1DC007235, RO1DC016859)
- Leverhulme Trust (RPG-2016-095)
- European Research Council (725729)
- Topics
- Life Sciences › Neuroscience › Sensory Systems › Olfactory and Sensory Function Studies
- Health Sciences › Medicine › Infectious Diseases › SARS-CoV-2 and COVID-19 Research
- Health Sciences › Medicine › Infectious Diseases › COVID-19 Clinical Research Studies
- Keywords
- SARS-CoV-2, COVID-19 pandemic, anosmia, olfactory epithelium, olfactory bulb, ACE2, TMPRSS2, viral entry, non-neuronal cells, sustentacular cells, pericytes, olfactory stem cells, olfactory dysfunction
- MeSH terms
- Betacoronavirus, Angiotensin-Converting Enzyme 2, COVID-19, SARS-CoV-2, Animals, Olfaction Disorders, Callithrix, Humans, Peptidyl-Dipeptidase A, Macaca, Olfactory Mucosa, Pneumonia, Viral, Serine Endopeptidases, Smell, Olfactory Receptor Neurons, Coronavirus Infections, Mice, Virus Internalization, Pandemics
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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