Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

Enzymatic Amplification of β-Globin Genomic Sequences and Restriction Site Analysis for Diagnosis of Sickle Cell Anemia

Saiki, R. K., Scharf, S., Faloona, F., Mullis, K. B., Horn, G. T., Erlich, H. A., & Arnheim, N. (1985) · Science · doi:10.1126/science.2999980 · Cited by 8,956

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies.

Klindworth, A., Pruesse, E., Schweer, T., Peplies, J., Quast, C., Horn, M., & Glöckner, F. O. (2013) · Nucleic Acids Research · doi:10.1093/nar/gks808 · Cited by 8,850

A bacterium that degrades and assimilates poly(ethylene terephthalate)

Yoshida, S., Hiraga, K., Takehana, T., Taniguchi, I., Yamaji, H., Maeda, Y., Toyohara, K., Miyamoto, K., Kimura, Y., & Oda, K. (2016) · Science · doi:10.1126/science.aad6359 · Cited by 3,367

Short-chain fatty acids in control of body weight and insulin sensitivity

Canfora, E. E., Jocken, J. W., & Blaak, E. E. (2015) · Nature Reviews Endocrinology · doi:10.1038/nrendo.2015.128 · Cited by 2,298

PANDAseq: paired-end assembler for Illumina sequences

Masella, A. P., Bartram, A. K., Truszkowski, J. M., Brown, D. G., & Neufeld, J. D. (2012) · BMC Bioinformatics · doi:10.1186/1471-2105-13-31 · Cited by 2,132

Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium

Derrien, M., Vaughan, E. E., Plugge, C. M., & de Vos, W. M. (2004) · International Journal of Systematic and Evolutionary Microbiology · doi:10.1099/ijs.0.02873-0 · Cited by 2,094

Bias in template-to-product ratios in multitemplate PCR

Polz, M. F., & Cavanaugh, C. M. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.10.3724-3730.1998 · Cited by 1,484

MICROBIAL DIVERSITY IN SOIL: Selection of Microbial Populations by Plant and Soil Type and Implications for Disease Suppressiveness

Garbeva, P., van Veen, J. A., & van Elsas, J. D. (2004) · Annual Review of Phytopathology · doi:10.1146/annurev.phyto.42.012604.135455 · Cited by 1,458

Functional food science and gastrointestinal physiology and function

Salminen, S., Bouley, C., Boutron, M.-C., Cummings, J. H., Franck, A., Gibson, G. R., Isolauri, E., Moreau, M.-C., Roberfroid, M., & Rowland, I. (1998) · British Journal of Nutrition · doi:10.1079/bjn19980108 · Cited by 1,398

Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers

Wang, T., Cai, G., Qiu, Y., Fei, N., Zhang, M., Pang, X., Jia, W., Cai, S., & Zhao, L. (2012) · The ISME Journal · doi:10.1038/ismej.2011.109 · Cited by 1,287

Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome

Jakobsson, H. E., Jernberg, C., Andersson, A. F., Sjölund-Karlsson, M., Jansson, J. K., & Engstrand, L. (2010) · PLoS ONE · doi:10.1371/journal.pone.0009836 · Cited by 1,160

Long-term ecological impacts of antibiotic administration on the human intestinal microbiota

Jernberg, C., Löfmark, S., Edlund, C., & Jansson, J. K. (2007) · The ISME Journal · doi:10.1038/ismej.2007.3 · Cited by 1,134

Symbiotic gut microbes modulate human metabolic phenotypes

Li, M., Wang, B., Zhang, M., Rantalainen, M., Wang, S., Zhou, H., Zhang, Y., Shen, J., Pang, X., Zhang, M., et al. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0712038105 · Cited by 1,144

Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice

Zhang, C., Zhang, M., Wang, S., Han, R., Cao, Y., Hua, W., Mao, Y., Zhang, X., Pang, X., Wei, C., et al. (2010) · The ISME Journal · doi:10.1038/ismej.2009.112 · Cited by 1,024

Changes in the Composition of the Human Fecal Microbiome After Bacteriotherapy for Recurrent Clostridium difficile-associated Diarrhea

Khoruts, A., Dicksved, J., Jansson, J. K., & Sadowsky, M. J. (2010) · Journal of Clinical Gastroenterology · doi:10.1097/mcg.0b013e3181c87e02 · Cited by 649

PCR-DGGE fingerprinting: novel strategies for detection of microbes in food

Ercolini, D. (2004) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2003.11.006 · Cited by 624

Comparison of the gut microbiota composition between obese and non-obese individuals in a Japanese population, as analyzed by terminal restriction fragment length polymorphism and next-generation sequencing

Kasai, C., Sugimoto, K., Moritani, I., Tanaka, J., Oya, Y., Inoue, H., Tameda, M., Shiraki, K., Ito, M., Takei, Y., et al. (2015) · BMC Gastroenterology · doi:10.1186/s12876-015-0330-2 · Cited by 581

Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis

Yang, B., Wang, Y., & Qian, P.-Y. (2016) · BMC Bioinformatics · doi:10.1186/s12859-016-0992-y · Cited by 560

Spatial and seasonal variation in diversity and structure of microbial biofilms on marine plastics in Northern European waters

Oberbeckmann, S., Loeder, M. G. J., Gerdts, G., & Osborn, A. M. (2014) · FEMS Microbiology Ecology · doi:10.1111/1574-6941.12409 · Cited by 540

Uncovering the trimethylamine-producing bacteria of the human gut microbiota

Rath, S., Heidrich, B., Pieper, D. H., & Vital, M. (2017) · Microbiome · doi:10.1186/s40168-017-0271-9 · Cited by 515

Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohnʼs disease

Willing, B., Halfvarson, J., Dicksved, J., Rosenquist, M., Järnerot, G., Engstrand, L., Tysk, C., & Jansson, J. K. (2009) · Inflammatory Bowel Diseases · doi:10.1002/ibd.20783 · Cited by 455

The lung microbiome in moderate and severe chronic obstructive pulmonary disease

Pragman, A. A., Kim, H. B., Reilly, C. S., Wendt, C., & Isaacson, R. E. (2012) · PLoS ONE · doi:10.1371/journal.pone.0047305 · Cited by 437

Cultured Representatives of Two Major Phylogroups of Human Colonic Faecalibacterium prausnitzii Can Utilize Pectin, Uronic Acids, and Host-Derived Substrates for Growth

Lopez-Siles, M., Khan, T. M., Duncan, S. H., Harmsen, H. J. M., Garcia-Gil, L. J., & Flint, H. J. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.06858-11 · Cited by 433

Sinus Microbiome Diversity Depletion and Corynebacterium tuberculostearicum Enrichment Mediates Rhinosinusitis

Abreu, N. A., Nagalingam, N. A., Song, Y., Roediger, F. C., Pletcher, S. D., Goldberg, A. N., & Lynch, S. V. (2012) · Science Translational Medicine · doi:10.1126/scitranslmed.3003783 · Cited by 415

Functional Soil Microbiome: Belowground Solutions to an Aboveground Problem

Lakshmanan, V., Selvaraj, G., & Bais, H. P. (2014) · Plant Physiology · doi:10.1104/pp.114.245811 · Cited by 400

Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria

Lonergan, D. J., Jenter, H. L., Coates, J. D., Phillips, E. J., Schmidt, T. M., & Lovley, D. R. (1996) · Journal of Bacteriology · doi:10.1128/jb.178.8.2402-2408.1996 · Cited by 380

Outgrowth of the bacterial airway microbiome after rhinovirus exacerbation of chronic obstructive pulmonary disease

Molyneaux, P. L., Mallia, P., Cox, M. J., Footitt, J., Willis-Owen, S. A. G., Homola, D., Trujillo-Torralbo, M.-B., Elkin, S., Kon, O. M., Cookson, W. O. C., et al. (2013) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201302-0341oc · Cited by 390

Techniques used to characterize the gut microbiota: a guide for the clinician

Fraher, M. H., O'Toole, P. W., & Quigley, E. M. M. (2012) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2012.44 · Cited by 385

A Diet High in Resistant Starch Modulates Microbiota Composition, SCFA Concentrations, and Gene Expression in Pig Intestine

Haenen, D., Zhang, J., Souza da Silva, C., Bosch, G., van der Meer, I. M., van Arkel, J., van den Borne, J. J. G. C., Pérez Gutiérrez, O., Smidt, H., Kemp, B., et al. (2013) · The Journal of Nutrition · doi:10.3945/jn.112.169672 · Cited by 341

Culture-Independent Analyses of Temporal Variation of the Dominant Fecal Microbiota and Targeted Bacterial Subgroups in Crohn's Disease

Scanlan, P. D., Shanahan, F., O'Mahony, C., & Marchesi, J. R. (2006) · Journal of Clinical Microbiology · doi:10.1128/jcm.00312-06 · Cited by 330

High temporal and inter‐individual variation detected in the human ileal microbiota

Booijink, C. C. G. M., El‐Aidy, S., Rajilić‐Stojanović, M., Heilig, H. G. H. J., Troost, F. J., Smidt, H., Kleerebezem, M., De Vos, W. M., & Zoetendal, E. G. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2010.02294.x · Cited by 324

Duodenal and faecal microbiota of celiac children: molecular, phenotype and metabolome characterization

Di Cagno, R., De Angelis, M., De Pasquale, I., Ndagijimana, M., Vernocchi, P., Ricciuti, P., Gagliardi, F., Laghi, L., Crecchio, C., Guerzoni, M. E., et al. (2011) · BMC Microbiology · doi:10.1186/1471-2180-11-219 · Cited by 317

Prokaryotic Genetic Diversity throughout the Salinity Gradient of a Coastal Solar Saltern

Benlloch, S., López‐López, A., Casamayor, E. O., Øvreås, L., Goddard, V., Daae, F. L., Smerdon, G., Massana, R., Joint, I., Thingstad, F., et al. (2002) · Environmental Microbiology · doi:10.1046/j.1462-2920.2002.00306.x · Cited by 316

Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse

Bangsgaard Bendtsen, K. M., Krych, L., Sørensen, D. B., Pang, W., Nielsen, D. S., Josefsen, K., Hansen, L. H., Sørensen, S. J., & Hansen, A. K. (2012) · PLoS ONE · doi:10.1371/journal.pone.0046231 · Cited by 299

Competition and coexistence of sulfate-reducing bacteria, acetogens and methanogens in a lab-scale anaerobic bioreactor as affected by changing substrate to sulfate ratio

Dar, S. A., Kleerebezem, R., Stams, A. J. M., Kuenen, J. G., & Muyzer, G. (2008) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-008-1391-8 · Cited by 301

Structural & functional consequences of chronic psychosocial stress on the microbiome & host

Bharwani, A., Mian, M. F., Foster, J. A., Surette, M. G., Bienenstock, J., & Forsythe, P. (2016) · Psychoneuroendocrinology · doi:10.1016/j.psyneuen.2015.10.001 · Cited by 293

Selective colonization of insoluble substrates by human faecal bacteria

Leitch, E. C. M., Walker, A. W., Duncan, S. H., Holtrop, G., & Flint, H. J. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2006.01186.x · Cited by 297

Long-term effects of compost amendment of soil on functional and structural diversity and microbial activity

Ros, M., Klammer, S., Knapp, B., Aichberger, K., & Insam, H. (2006) · Soil Use and Management · doi:10.1111/j.1475-2743.2006.00027.x · Cited by 292

Anaerobic Benzene Oxidation in the Fe(III) Reduction Zone of Petroleum-Contaminated Aquifers

Anderson, R. T., Rooney-Varga, J. N., Gaw, C. V., & Lovley, D. R. (1998) · Environmental Science & Technology · doi:10.1021/es9704949 · Cited by 285

Direct and Fe(II)-Mediated Reduction of Technetium by Fe(III)-Reducing Bacteria

Lloyd, J. R., Sole, V. A., Van Praagh, C. V. G., & Lovley, D. R. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.9.3743-3749.2000 · Cited by 283

16S rRNA gene-based profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice

Walker, A. W., Martin, J. C., Scott, P., Parkhill, J., Flint, H. J., & Scott, K. P. (2015) · Microbiome · doi:10.1186/s40168-015-0087-4 · Cited by 273

Restoring Specific Lactobacilli Levels Decreases Inflammation and Muscle Atrophy Markers in an Acute Leukemia Mouse Model

Bindels, L. B., Beck, R., Schakman, O., Martin, J. C., De Backer, F., Sohet, F. M., Dewulf, E. M., Pachikian, B. D., Neyrinck, A. M., Thissen, J.-P., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0037971 · Cited by 278

Impact of Coffee Consumption on the Gut Microbiota: A Human Volunteer Study

Jaquet, M., Rochat, I., Moulin, J., Cavin, C., & Bibiloni, R. (2009) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2009.01.011 · Cited by 232

Impact of Pelvic Radiotherapy on Gut Microbiota of Gynecological Cancer Patients Revealed by Massive Pyrosequencing

Nam, Y.-D., Kim, H. J., Seo, J.-G., Kang, S. W., & Bae, J.-W. (2013) · PLoS ONE · doi:10.1371/journal.pone.0082659 · Cited by 230

Inter-personal diversity and temporal dynamics of dental, tongue, and salivary microbiota in the healthy oral cavity

Hall, M. W., Singh, N., Ng, K. F., Lam, D. K., Goldberg, M. B., Tenenbaum, H. C., Neufeld, J. D., G. Beiko, R., & Senadheera, D. B. (2017) · npj Biofilms and Microbiomes · doi:10.1038/s41522-016-0011-0 · Cited by 226

Neuroprotective Effects of Clostridium butyricum against Vascular Dementia in Mice via Metabolic Butyrate

Liu, J., Sun, J., Wang, F., Yu, X., Ling, Z., Li, H., Zhang, H., Jin, J., Chen, W., Pang, M., et al. (2015) · BioMed Research International · doi:10.1155/2015/412946 · Cited by 225

Probiotic modulation of the microbiota-gut-brain axis and behaviour in zebrafish

Borrelli, L., Aceto, S., Agnisola, C., De Paolo, S., Dipineto, L., Stilling, R. M., Dinan, T. G., Cryan, J. F., Menna, L. F., & Fioretti, A. (2016) · Scientific Reports · doi:10.1038/srep30046 · Cited by 225

Bacterial dynamics in intestines of the black tiger shrimp and the Pacific white shrimp during Vibrio harveyi exposure

Rungrassamee, W., Klanchui, A., Maibunkaew, S., & Karoonuthaisiri, N. (2016) · Journal of Invertebrate Pathology · doi:10.1016/j.jip.2015.11.004 · Cited by 222

Effect of electron donors on the fractionation of sulfur isotopes by a marine Desulfovibrio sp

Sim, M. S., Ono, S., Donovan, K., Templer, S. P., & Bosak, T. (2011) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2011.05.021 · Cited by 216

Wildfire and charcoal enhance nitrification and ammonium-oxidizing bacterial abundance in dry montane forest soils

Ball, P. N., MacKenzie, M. D., DeLuca, T. H., & Montana, W. E. H. (2010) · Journal of Environmental Quality · doi:10.2134/jeq2009.0082 · Cited by 218

Effectiveness of ecological rescue for altered soil microbial communities and functions

Calderón, K., Spor, A., Breuil, M.-C., Bru, D., Bizouard, F., Violle, C., Barnard, R. L., & Philippot, L. (2017) · The ISME Journal · doi:10.1038/ismej.2016.86 · Cited by 205

Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing, and statistical ecology approaches

Kocherginskaya, S. A., Aminov, R. I., & White, B. A. (2001) · Anaerobe · doi:10.1006/anae.2001.0378 · Cited by 214

The Gut Microbiota Predispose to the Pathophysiology of Acute Postradiotherapy Diarrhea

Manichanh, C., Varela, E., Martinez, C., Antolin, M., Llopis, M., Dor, J., Giralt, J., Guarner, F., & Malagelada, J.-R. (2008) · The American Journal of Gastroenterology · doi:10.1111/j.1572-0241.2008.01868.x · Cited by 201

Unstable Composition of the Fecal Microbiota in Ulcerative Colitis During Clinical Remission

Martinez, C., Antolin, M., Santos, J., Torrejon, A., Casellas, F., Borruel, N., Guarner, F., & Malagelada, J.-R. (2008) · The American Journal of Gastroenterology · doi:10.1111/j.1572-0241.2007.01592.x · Cited by 208

Causality of small and large intestinal microbiota in weight regulation and insulin resistance

Scheithauer, T. P. M., Dallinga-Thie, G. M., de Vos, W. M., Nieuwdorp, M., & van Raalte, D. H. (2016) · Molecular Metabolism · doi:10.1016/j.molmet.2016.06.002 · Cited by 188

Analysis of the microflora in Tibetan kefir grains using denaturing gradient gel electrophoresis

Zhou, J., Liu, X., Jiang, H., & Dong, M. (2009) · Food Microbiology · doi:10.1016/j.fm.2009.04.009 · Cited by 185

Bacterial population in intestines of the Black Tiger Shrimp (Penaeus monodon) under different growth stages

Rungrassamee, W., Klanchui, A., Chaiyapechara, S., Maibunkaew, S., Tangphatsornruang, S., Jiravanichpaisal, P., & Karoonuthaisiri, N. (2013) · PLoS ONE · doi:10.1371/journal.pone.0060802 · Cited by 179

Precision-guided antimicrobial peptide as a targeted modulator of human microbial ecology

Guo, L., McLean, J. S., Yang, Y., Eckert, R., Kaplan, C. W., Kyme, P., Sheikh, O., Varnum, B., Lux, R., Shi, W., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1506207112 · Cited by 172

Biological measurements in a nationwide soil monitoring network

Rutgers, M., Schouten, A. J., Bloem, J., Van Eekeren, N., De Goede, R. G. M., Jagersop Akkerhuis, G. A. J. M., Van der Wal, A., Mulder, C., Brussaard, L., & Breure, A. M. (2009) · European Journal of Soil Science · doi:10.1111/j.1365-2389.2009.01163.x · Cited by 168

Biodiversity in Oscypek, a traditional Polish cheese, determined by culture-dependent and-independent approaches

Alegría, Á., Szczesny, P., Mayo, B., Bardowski, J., & Kowalczyk, M. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.06081-11 · Cited by 152

Specificity and sensitivity of eubacterial primers utilized for molecular profiling of bacteria within complex microbial ecosystems

Huws, S. A., Edwards, J. E., Kim, E. J., & Scollan, N. D. (2007) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2007.06.013 · Cited by 150

Diversity of Bacteroidetes in high‐altitude saline evaporitic basins in northern Chile

Dorador, C., Meneses, D., Urtuvia, V., Demergasso, C., Vila, I., Witzel, K., & Imhoff, J. F. (2009) · Journal of Geophysical Research: Biogeosciences · doi:10.1029/2008jg000837 · Cited by 142

Kefir: A Multifaceted Fermented Dairy Product

Nielsen, B., Gürakan, G. C., & Ünlü, G. (2014) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-014-9168-0 · Cited by 140

Impact of Kefir Derived Lactobacillus kefiri on the Mucosal Immune Response and Gut Microbiota

Carasi, P., Racedo, S. M., Jacquot, C., Romanin, D. E., Serradell, M. A., & Urdaci, M. C. (2015) · Journal of Immunology Research · doi:10.1155/2015/361604 · Cited by 145

Impact of polydextrose on the faecal microbiota: a double-blind, crossover, placebo-controlled feeding study in healthy human subjects

Costabile, A., Fava, F., Röytiö, H., Forssten, S. D., Olli, K., Klievink, J., Rowland, I. R., Ouwehand, A. C., Rastall, R. A., Gibson, G. R., et al. (2012) · British Journal of Nutrition · doi:10.1017/s0007114511005782 · Cited by 135

Alteration in the gastric microbiota and its restoration by probiotics in patients with functional dyspepsia

Igarashi, M., Nakae, H., Matsuoka, T., Takahashi, S., Hisada, T., Tomita, J., & Koga, Y. (2017) · BMJ Open Gastroenterology · doi:10.1136/bmjgast-2017-000144 · Cited by 133

Using DGGE profiling to develop a novel culture medium suitable for oral microbial communities: DGGE profiling for culture medium development

Tian, Y., He, X., Torralba, M., Yooseph, S., Nelson, K. E., Lux, R., McLean, J. S., Yu, G., & Shi, W. (2010) · Molecular Oral Microbiology · doi:10.1111/j.2041-1014.2010.00585.x · Cited by 133

Analysis of yeast and archaeal population dynamics in kimchi using denaturing gradient gel electrophoresis

Chang, H.-W., Kim, K.-H., Nam, Y.-D., Roh, S. W., Kim, M.-S., Jeon, C. O., Oh, H.-M., & Bae, J.-W. (2008) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2008.05.013 · Cited by 129

Bacteria Present in Carotid Arterial Plaques Are Found as Biofilm Deposits Which May Contribute to Enhanced Risk of Plaque Rupture

Lanter, B. B., Sauer, K., & Davies, D. G. (2014) · mBio · doi:10.1128/mbio.01206-14 · Cited by 129

Profiling bacterial communities by MinION sequencing of ribosomal operons

Kerkhof, L. J., Dillon, K. P., Häggblom, M. M., & McGuinness, L. R. (2017) · Microbiome · doi:10.1186/s40168-017-0336-9 · Cited by 115

The gut microbiome derived from anorexia nervosa patients impairs weight gain and behavioral performance in female mice

Hata, T., Miyata, N., Takakura, S., Yoshihara, K., Asano, Y., Kimura-Todani, T., Yamashita, M., Zhang, X.-T., Watanabe, N., Mikami, K., et al. (2019) · Endocrinology · doi:10.1210/en.2019-00408 · Cited by 116

Correlation of particular bacterial PCR-denaturing gradient gel electrophoresis patterns with bovine ruminal fermentation parameters and feed efficiency traits

Hernandez-Sanabria, E., Guan, L. L., Goonewardene, L. A., Li, M., Mujibi, D. F., Stothard, P., Moore, S. S., & Leon-Quintero, M. C. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.01052-10 · Cited by 119

Lactobacillaceae and Cell Adhesion: Genomic and Functional Screening

Turpin, W., Humblot, C., Noordine, M.-L., Thomas, M., & Guyot, J.-P. (2012) · PLoS ONE · doi:10.1371/journal.pone.0038034 · Cited by 118

A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples

Uyaguari-Diaz, M. I., Chan, M., Chaban, B. L., Croxen, M. A., Finke, J. F., Hill, J. E., Peabody, M. A., Van Rossum, T., Suttle, C. A., Brinkman, F. S. L., et al. (2016) · Microbiome · doi:10.1186/s40168-016-0166-1 · Cited by 104

Fecal Microbiota in Healthy Subjects Following Omnivore, Vegetarian and Vegan Diets: Culturable Populations and rRNA DGGE Profiling

Ferrocino, I., Di Cagno, R., De Angelis, M., Turroni, S., Vannini, L., Bancalari, E., Rantsiou, K., Cardinali, G., Neviani, E., & Cocolin, L. (2015) · PLOS ONE · doi:10.1371/journal.pone.0128669 · Cited by 107

Thermophilic anaerobic biodegradation test and analysis of eubacteria involved in anaerobic biodegradation of four specified biodegradable polyesters

Yagi, H., Ninomiya, F., Funabashi, M., & Kunioka, M. (2013) · Polymer Degradation and Stability · doi:10.1016/j.polymdegradstab.2013.03.010 · Cited by 104

Characterization of the dynamics of initial bacterial colonization of nonconserved forage in the bovine rumen: Dynamics of rumen bacterial colonization of fresh forage

Edwards, J. E., Huws, S. A., Kim, E. J., & Kingston-Smith, A. H. (2007) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2007.00392.x · Cited by 103

Influence of buffalo manure, compost, vermicompost and biochar amendments on bacterial and viral communities in soil and adjacent aquatic systems

Doan, T. T., Bouvier, C., Bettarel, Y., Bouvier, T., Henry-des-Tureaux, T., Janeau, J. L., Lamballe, P., Nguyen, B. V., & Jouquet, P. (2014) · Applied Soil Ecology · doi:10.1016/j.apsoil.2013.08.016 · Cited by 101

Chemically and biologically-mediated fertilizing value of manure-derived biochar

Subedi, R., Taupe, N., Ikoyi, I., Bertora, C., Zavattaro, L., Schmalenberger, A., Leahy, J. J., & Grignani, C. (2016) · Science of The Total Environment · doi:10.1016/j.scitotenv.2016.01.160 · Cited by 100

Late-onset bloodstream infection and perturbed maturation of the gastrointestinal microbiota in premature infants

Shaw, A. G., Sim, K., Randell, P., Cox, M. J., McClure, Z. E., Li, M.-S., Donaldson, H., Langford, P. R., Cookson, W. O. C. M., Moffatt, M. F., et al. (2015) · PLoS ONE · doi:10.1371/journal.pone.0132923 · Cited by 96

Manganese removal from mine waters – investigating the occurrence and importance of manganese carbonates

Bamforth, S. M., Manning, D. A. C., Singleton, I., Younger, P. L., & Johnson, K. L. (2006) · Applied Geochemistry · doi:10.1016/j.apgeochem.2006.06.004 · Cited by 95

Zooming into food-associated microbial consortia: a “cultural” evolution

Cocolin, L., & Ercolini, D. (2015) · Current Opinion in Food Science · doi:10.1016/j.cofs.2015.01.003 · Cited by 93

Evidence for Vertical Transmission of Bacterial Symbionts from Adult to Embryo in the Caribbean Sponge Svenzea zeai

Lee, O. O., Chui, P. Y., Wong, Y. H., Pawlik, J. R., & Qian, P.-Y. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.00023-09 · Cited by 79

Effect of endophytic Bacillus cereus ERBP inoculation into non-native host: Potentials and challenges for airborne formaldehyde removal

Khaksar, G., Treesubsuntorn, C., & Thiravetyan, P. (2016) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2016.06.020 · Cited by 73

Both Cycloclasticus spp. and Pseudomonas spp. as PAH-degrading bacteria in the Seine estuary (France)

Niepceron, M., Portet-Koltalo, F., Merlin, C., Motelay-Massei, A., Barray, S., & Bodilis, J. (2010) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2009.00788.x · Cited by 70

Massively parallel sequencing for monitoring genetic consistency and quality control of live viral vaccines

Neverov, A., & Chumakov, K. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1012537107 · Cited by 68

The effects of different orthodontic appliances upon microbial communities

Ireland, A. J., Soro, V., Sprague, S. V., Harradine, N. W. T., Day, C., Al‐Anezi, S., Jenkinson, H. F., Sherriff, M., Dymock, D., & Sandy, J. R. (2014) · Orthodontics & Craniofacial Research · doi:10.1111/ocr.12037 · Cited by 67

Characterization of Bacteria, Clostridia and Bacteroides in Faeces of Vegetarians Using qPCR and PCR-DGGE Fingerprinting

Liszt, K., Zwielehner, J., Handschur, M., Hippe, B., Thaler, R., & Haslberger, A. G. (2009) · Annals of Nutrition and Metabolism · doi:10.1159/000229505 · Cited by 61

A comparison of the gut microbiota among adult patients with drug-responsive and drug-resistant epilepsy: an exploratory study

Lee, H., Lee, S., Lee, D.-H., & Kim, D. W. (2021) · Epilepsy Research · doi:10.1016/j.eplepsyres.2021.106601 · Cited by 57

Molecular Microbiological Characterization of Preterm Neonates at Risk of Bronchopulmonary Dysplasia

Payne, M. S., Goss, K. C. W., Connett, G. J., Kollamparambil, T., Legg, J. P., Thwaites, R., Ashton, M., Puddy, V., Peacock, J. L., & Bruce, K. D. (2010) · Pediatric Research · doi:10.1203/pdr.0b013e3181d026c3 · Cited by 58

Sex differences in rumen fermentation and microbiota of Tibetan goat

Guo, X., Sha, Y., Lv, W., Pu, X., Liu, X., Luo, Y., Hu, J., Wang, J., Li, S., & Zhao, Z. (2022) · Microbial Cell Factories · doi:10.1186/s12934-022-01783-8 · Cited by 58

Effects of oregano essential oil on the ruminal pH and microbial population of sheep

Zhou, R., Wu, J., Zhang, L., Liu, L., Casper, D. P., Jiao, T., Liu, T., Wang, J., Lang, X., Song, S., et al. (2019) · PLoS ONE · doi:10.1371/journal.pone.0217054 · Cited by 56

Comparison of methods and animal models commonly used for investigation of fecal microbiota: effects of time, host and gender

Bernbom, N., Nørrung, B., Saadbye, P., Mølbak, L., Vogensen, F. K., & Licht, T. R. (2006) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2005.10.014 · Cited by 48

Ecological restoration of a copper polluted vineyard: long-term impact of farmland abandonment on soil bio-chemical properties and microbial communities

Cavani, L., Manici, L. M., Caputo, F., Peruzzi, E., & Ciavatta, C. (2016) · Journal of Environmental Management · doi:10.1016/j.jenvman.2016.07.050 · Cited by 46

The Role of Fatty Acid Metabolites in Vaginal Health and Disease: Application to Candidiasis

Baldewijns, S., Sillen, M., Palmans, I., Vandecruys, P., Van Dijck, P., & Demuyser, L. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.705779 · Cited by 44

Characterization of bacterial diversity associated with calcareous deposits and drip-waters, and isolation of calcifying bacteria from two Colombian mines

García G., M., Márquez G., M. A., & Moreno H., C. X. (2016) · Microbiological Research · doi:10.1016/j.micres.2015.09.006 · Cited by 38

Assessment of Miscanthus × giganteus secondary root metabolites for the biostimulation of PAH-utilizing soil bacteria

Techer, D., D’Innocenzo, M., Laval-Gilly, P., Henry, S., Bennasroune, A., Martinez-Chois, C., & Falla, J. (2012) · Applied Soil Ecology · doi:10.1016/j.apsoil.2012.06.009 · Cited by 35

Do Composts Affect the Soil Microbial Community?

Knapp, B. A., Ros, M., & Insam, H. (2010) · Microbes at Work · doi:10.1007/978-3-642-04043-6_14 · Cited by 32

Microbial characterization of an artisanal production of Robiola di Roccaverano cheese

Biolcati, F., Andrighetto, C., Bottero, M. T., & Dalmasso, A. (2020) · Journal of Dairy Science · doi:10.3168/jds.2019-17451 · Cited by 26

Effects of single-root-grafting, double-root-grafting and compost application on microbial properties of rhizosphere soils in Chinese protected cucumber (Cucumis sativus L.) production systems

Gao, Y., Tian, Y., Liang, X., & Gao, L. (2015) · Scientia Horticulturae · doi:10.1016/j.scienta.2015.02.026 · Cited by 22

An improved effective microorganism (EM) soil ball-making method for water quality restoration

Park, G.-S., Khan, A. R., Kwak, Y., Hong, S.-J., Jung, B., Ullah, I., Kim, J.-G., & Shin, J.-H. (2016) · Environmental Science and Pollution Research · doi:10.1007/s11356-015-5617-x · Cited by 20