vegan: Community Ecology Package

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

The GTEx Consortium, Ardlie, K. G., Deluca, D. S., Segrè, A. V., Sullivan, T. J., Young, T. R., Gelfand, E. T., Trowbridge, C. A., Maller, J. B., Tukiainen, T., et al. (2015) · Science · doi:10.1126/science.1262110 · Cited by 5,062

Using network analysis to explore co-occurrence patterns in soil microbial communities

Barberán, A., Bates, S. T., Casamayor, E. O., & Fierer, N. (2012) · The ISME Journal · doi:10.1038/ismej.2011.119 · Cited by 3,044

Environment dominates over host genetics in shaping human gut microbiota

Rothschild, D., Weissbrod, O., Barkan, E., Kurilshikov, A., Korem, T., Zeevi, D., Costea, P. I., Godneva, A., Kalka, I. N., Bar, N., et al. (2018) · Nature · doi:10.1038/nature25973 · Cited by 2,859

A communal catalogue reveals Earth's multiscale microbial diversity

Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., et al. (2017) · Nature · doi:10.1038/nature24621 · Cited by 2,684

Population-level analysis of gut microbiome variation

Falony, G., Joossens, M., Vieira-Silva, S., Wang, J., Darzi, Y., Faust, K., Kurilshikov, A., Bonder, M. J., Valles-Colomer, M., Vandeputte, D., et al. (2016) · Science · doi:10.1126/science.aad3503 · Cited by 2,400

Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: A proof-of-concept exploratory study

Depommier, C., Everard, A., Druart, C., Plovier, H., Van Hul, M., Vieira-Silva, S., Falony, G., Raes, J., Maiter, D., Delzenne, N. M., et al. (2019) · Nature Medicine · doi:10.1038/s41591-019-0495-2 · Cited by 2,357

Shotgun metagenomics, from sampling to analysis

Quince, C., Walker, A. W., Simpson, J. T., Loman, N. J., & Segata, N. (2017) · Nature Biotechnology · doi:10.1038/nbt.3935 · Cited by 2,202

Human gut microbes impact host serum metabolome and insulin sensitivity

Pedersen, H. K., Gudmundsdottir, V., Nielsen, H. B., Hyotylainen, T., Nielsen, T., Jensen, B. A. H., Forslund, K., Hildebrand, F., Prifti, E., Falony, G., et al. (2016) · Nature · doi:10.1038/nature18646 · Cited by 2,116

Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences

Cox, L. M., Yamanishi, S., Sohn, J., Alekseyenko, A. V., Leung, J. M., Cho, I., Kim, S. G., Li, H., Gao, Z., Mahana, D., et al. (2014) · Cell · doi:10.1016/j.cell.2014.05.052 · Cited by 1,859

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

Zhernakova, A., Kurilshikov, A., Bonder, M. J., Tigchelaar, E. F., Schirmer, M., Vatanen, T., Mujagic, Z., Vila, A. V., Falony, G., Vieira-Silva, S., et al. (2016) · Science · doi:10.1126/science.aad3369 · Cited by 1,914

Global patterns and predictors of marine biodiversity across taxa

Tittensor, D. P., Mora, C., Jetz, W., Lotze, H. K., Ricard, D., Berghe, E. V., & Worm, B. (2010) · Nature · doi:10.1038/nature09329 · Cited by 1,524

Microbiota Transfer Therapy Alters Gut Ecosystem and Improves Gastrointestinal and Autism Symptoms: An Open-Label Study

Kang, D.-W., Adams, J. B., Gregory, A. C., Borody, T., Chittick, L., Fasano, A., Khoruts, A., Geis, E., Maldonado, J., McDonough-Means, S., et al. (2017) · Microbiome · doi:10.1186/s40168-016-0225-7 · Cited by 1,391

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

Norman, J. M., Handley, S. A., Baldridge, M. T., Droit, L., Liu, C. Y., Keller, B. C., Kambal, A., Monaco, C. L., Zhao, G., Fleshner, P., et al. (2015) · Cell · doi:10.1016/j.cell.2015.01.002 · Cited by 1,285

Salt-responsive gut commensal modulates TH17 axis and disease

Wilck, N., Matus, M. G., Kearney, S. M., Olesen, S. W., Forslund, K., Bartolomaeus, H., Haase, S., Mähler, A., Balogh, A., Markó, L., et al. (2017) · Nature · doi:10.1038/nature24628 · Cited by 1,310

Dynamics of the human gut microbiome in inflammatory bowel disease

Halfvarson, J., Brislawn, C. J., Lamendella, R., Vázquez-Baeza, Y., Walters, W. A., Bramer, L. M., D'Amato, M., Bonfiglio, F., McDonald, D., Gonzalez, A., et al. (2017) · Nature Microbiology · doi:10.1038/nmicrobiol.2017.4 · Cited by 1,204

Quantitative microbiome profiling links gut community variation to microbial load

Vandeputte, D., Kathagen, G., D’hoe, K., Vieira-Silva, S., Valles-Colomer, M., Sabino, J., Wang, J., Tito, R. Y., De Commer, L., Darzi, Y., et al. (2017) · Nature · doi:10.1038/nature24460 · Cited by 1,218

Chronic kidney disease alters intestinal microbial flora

Vaziri, N. D., Wong, J., Pahl, M., Piceno, Y. M., Yuan, J., DeSantis, T. Z., Ni, Z., Nguyen, T.-H., & Andersen, G. L. (2013) · Kidney International · doi:10.1038/ki.2012.345 · Cited by 1,164

Global exchange and accumulation of non-native plants

van Kleunen, M., Dawson, W., Essl, F., Pergl, J., Winter, M., Weber, E., Kreft, H., Weigelt, P., Kartesz, J., Nishino, M., et al. (2015) · Nature · doi:10.1038/nature14910 · Cited by 1,095

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Asnicar, F., Berry, S. E., Valdes, A. M., Nguyen, L. H., Piccinno, G., Drew, D. A., Leeming, E., Gibson, R., Le Roy, C., Khatib, H. A., et al. (2021) · Nature Medicine · doi:10.1038/s41591-020-01183-8 · Cited by 995

Tumor-resident intracellular microbiota promotes metastatic colonization in breast cancer

Fu, A., Yao, B., Dong, T., Chen, Y., Yao, J., Liu, Y., Li, H., Bai, H., Liu, X., Zhang, Y., et al. (2022) · Cell · doi:10.1016/j.cell.2022.02.027 · Cited by 981

Characterization of the gut microbiome using 16S or shotgun metagenomics

Jovel, J., Patterson, J., Wang, W., Hotte, N., O'Keefe, S., Mitchel, T., Perry, T., Kao, D., Mason, A. L., Madsen, K. L., et al. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00459 · Cited by 942

Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance

Rosshart, S. P., Vassallo, B. G., Angeletti, D., Hutchinson, D. S., Morgan, A. P., Takeda, K., Hickman, H. D., McCulloch, J. A., Badger, J. H., Ajami, N. J., et al. (2017) · Cell · doi:10.1016/j.cell.2017.09.016 · Cited by 862

Analysis of the lung microbiome in the “healthy” smoker and in COPD.

Erb-Downward, J. R., Thompson, D. L., Han, M. K., Freeman, C. M., McCloskey, L., Schmidt, L. A., Young, V. B., Toews, G. B., Curtis, J. L., Sundaram, B., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016384 · Cited by 973

Quantitative Proteomics of the Cancer Cell Line Encyclopedia

Nusinow, D. P., Szpyt, J., Ghandi, M., Rose, C. M., McDonald, E. R., Kalocsay, M., Jané-Valbuena, J., Gelfand, E., Schweppe, D. K., Jedrychowski, M., et al. (2020) · Cell · doi:10.1016/j.cell.2019.12.023 · Cited by 957

Diet and feeding pattern affect the diurnal dynamics of the gut microbiome

Zarrinpar, A., Chaix, A., Yooseph, S., & Panda, S. (2014) · Cell Metabolism · doi:10.1016/j.cmet.2014.11.008 · Cited by 926

The microbiome of uncontacted Amerindians

Clemente, J. C., Pehrsson, E. C., Blaser, M. J., Sandhu, K., Gao, Z., Wang, B., Magris, M., Hidalgo, G., Contreras, M., Noya-Alarcón, Ó., et al. (2015) · Science Advances · doi:10.1126/sciadv.1500183 · Cited by 851

Daily sampling reveals personalized diet-microbiome associations in humans

Johnson, A. J., Vangay, P., Al-Ghalith, G. A., Hillmann, B. M., Ward, T. L., Shields-Cutler, R. R., Kim, A. D., Shmagel, A. K., Syed, A. N., Walter, J., et al. (2019) · Cell Host & Microbe · doi:10.1016/j.chom.2019.05.005 · Cited by 742

Enrichment of the lung microbiome with gut bacteria in sepsis and the acute respiratory distress syndrome

Dickson, R. P., Singer, B. H., Newstead, M. W., Falkowski, N. R., Erb-Downward, J. R., Standiford, T. J., & Huffnagle, G. B. (2016) · Nature Microbiology · doi:10.1038/nmicrobiol.2016.113 · Cited by 724

Land-use intensification causes multitrophic homogenization of grassland communities

Gossner, M. M., Lewinsohn, T. M., Kahl, T., Grassein, F., Boch, S., Prati, D., Birkhofer, K., Renner, S. C., Sikorski, J., Wubet, T., et al. (2016) · Nature · doi:10.1038/nature20575 · Cited by 706

Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical Criteria

Srinivasan, S., Hoffman, N. G., Morgan, M. T., Matsen, F. A., Fiedler, T. L., Hall, R. W., Ross, F. J., McCoy, C. O., Bumgarner, R., Marrazzo, J. M., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0037818 · Cited by 673

Landscape simplification filters species traits and drives biotic homogenization

Gámez-Virués, S., Perović, D. J., Gossner, M. M., Börschig, C., Blüthgen, N., de Jong, H., Simons, N. K., Klein, A.-M., Krauss, J., Maier, G., et al. (2015) · Nature Communications · doi:10.1038/ncomms9568 · Cited by 666

Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems

Zinger, L., Amaral-Zettler, L. A., Fuhrman, J. A., Horner-Devine, M. C., Huse, S. M., Welch, D. B. M., Martiny, J. B. H., Sogin, M., Boetius, A., & Ramette, A. (2011) · PLoS ONE · doi:10.1371/journal.pone.0024570 · Cited by 643

Global trait–environment relationships of plant communities

Bruelheide, H., Dengler, J., Purschke, O., Lenoir, J., Jiménez-Alfaro, B., Hennekens, S. M., Botta-Dukát, Z., Chytrý, M., Field, R., Jansen, F., et al. (2018) · Nature Ecology & Evolution · doi:10.1038/s41559-018-0699-8 · Cited by 614

Diversity enhances carbon storage in tropical forests

Poorter, L., van der Sande, M. T., Thompson, J., Arets, E. J. M. M., Alarcón, A., Álvarez‐Sánchez, J., Ascarrunz, N., Balvanera, P., Barajas‐Guzmán, G., Boit, A., et al. (2015) · Global Ecology and Biogeography · doi:10.1111/geb.12364 · Cited by 611

The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes

Martínez, I., Stegen, J. C., Maldonado-Gómez, M. X., Eren, A. M., Siba, P. M., Greenhill, A. R., & Walter, J. (2015) · Cell Reports · doi:10.1016/j.celrep.2015.03.049 · Cited by 576

Extensive transmission of microbes along the gastrointestinal tract

Schmidt, T. S., Hayward, M. R., Coelho, L. P., Li, S. S., Costea, P. I., Voigt, A. Y., Wirbel, J., Maistrenko, O. M., Alves, R. J., Bergsten, E., et al. (2019) · eLife · doi:10.7554/elife.42693 · Cited by 596

Microbes on a bottle: substrate, season and geography influence community composition of microbes colonizing marine plastic debris

Oberbeckmann, S., Osborn, A. M., & Duhaime, M. B. (2016) · PLOS ONE · doi:10.1371/journal.pone.0159289 · Cited by 572

Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome

Vich Vila, A., Imhann, F., Collij, V., Jankipersadsing, S. A., Gurry, T., Mujagic, Z., Kurilshikov, A., Bonder, M. J., Jiang, X., Tigchelaar, E. F., et al. (2018) · Science Translational Medicine · doi:10.1126/scitranslmed.aap8914 · Cited by 587

Spatial Variation in the Healthy Human Lung Microbiome and the Adapted Island Model of Lung Biogeography

Dickson, R. P., Erb-Downward, J. R., Freeman, C. M., McCloskey, L., Beck, J. M., Huffnagle, G. B., & Curtis, J. L. (2015) · Annals of the American Thoracic Society · doi:10.1513/annalsats.201501-029oc · Cited by 567

Prebiotic inulin-type fructans induce specific changes in the human gut microbiota

Vandeputte, D., Falony, G., Vieira-Silva, S., Wang, J., Sailer, M., Theis, S., Verbeke, K., & Raes, J. (2017) · Gut · doi:10.1136/gutjnl-2016-313271 · Cited by 554

A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets

Koren, O., Knights, D., Gonzalez, A., Waldron, L., Segata, N., Knight, R., Huttenhower, C., & Ley, R. E. (2013) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1002863 · Cited by 508

Genomic evidence for the Pleistocene and recent population history of Native Americans

Raghavan, M., Steinrücken, M., Harris, K., Schiffels, S., Rasmussen, S., DeGiorgio, M., Albrechtsen, A., Valdiosera, C., Ávila-Arcos, M. C., Malaspinas, A.-S., et al. (2015) · Science · doi:10.1126/science.aab3884 · Cited by 540

Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota

Lauder, A. P., Roche, A. M., Sherrill-Mix, S., Bailey, A., Laughlin, A. L., Bittinger, K., Leite, R., Elovitz, M. A., Parry, S., & Bushman, F. D. (2016) · Microbiome · doi:10.1186/s40168-016-0172-3 · Cited by 539

Diversity of the human skin microbiome early in life

Capone, K. A., Dowd, S. E., Stamatas, G. N., & Nikolovski, J. (2011) · Journal of Investigative Dermatology · doi:10.1038/jid.2011.168 · Cited by 532

Screening Microalgae Strains for Biodiesel Production: Lipid Productivity and Estimation of Fuel Quality Based on Fatty Acids Profiles as Selective Criteria

Nascimento, I. A., Marques, S. S. I., Cabanelas, I. T. D., Pereira, S. A., Druzian, J. I., de Souza, C. O., Vich, D. V., de Carvalho, G. C., & Nascimento, M. A. (2013) · BioEnergy Research · doi:10.1007/s12155-012-9222-2 · Cited by 517

Single-cell mutation analysis of clonal evolution in myeloid malignancies

Miles, L. A., Bowman, R. L., Merlinsky, T. R., Csete, I. S., Ooi, A. T., Durruthy-Durruthy, R., Bowman, M., Famulare, C., Patel, M. A., Mendez, P., et al. (2020) · Nature · doi:10.1038/s41586-020-2864-x · Cited by 512

Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Estaki, M., Pither, J., Baumeister, P., Little, J. P., Gill, S. K., Ghosh, S., Ahmadi-Vand, Z., Marsden, K. R., & Gibson, D. L. (2016) · Microbiome · doi:10.1186/s40168-016-0189-7 · Cited by 476

Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut

Roager, H. M., Hansen, L. B. S., Bahl, M. I., Frandsen, H. L., Carvalho, V., Gøbel, R. J., Dalgaard, M. D., Plichta, D. R., Sparholt, M. H., Vestergaard, H., et al. (2016) · Nature Microbiology · doi:10.1038/nmicrobiol.2016.93 · Cited by 449

Temporal variability is a personalized feature of the human microbiome

Flores, G. E., Caporaso, J. G., Henley, J. B., Rideout, J. R., Domogala, D., Chase, J., Leff, J. W., Vázquez-Baeza, Y., Gonzalez, A., Knight, R., et al. (2014) · Genome Biology · doi:10.1186/s13059-014-0531-y · Cited by 446

Maternal prenatal stress is associated with the infant intestinal microbiota

Zijlmans, M. A. C., Korpela, K., Riksen-Walraven, J. M., de Vos, W. M., & de Weerth, C. (2015) · Psychoneuroendocrinology · doi:10.1016/j.psyneuen.2015.01.006 · Cited by 438

Human microglia regional heterogeneity and phenotypes determined by multiplexed single-cell mass cytometry

NBB-Psy, Böttcher, C., Schlickeiser, S., Sneeboer, M. A. M., Kunkel, D., Knop, A., Paza, E., Fidzinski, P., Kraus, L., Snijders, G. J. L., et al. (2019) · Nature Neuroscience · doi:10.1038/s41593-018-0290-2 · Cited by 436

Relationships of gut microbiota, short-chain fatty acids, inflammation, and the gut barrier in Parkinson’s disease

Aho, V. T. E., Houser, M. C., Pereira, P. A. B., Chang, J., Rudi, K., Paulin, L., Hertzberg, V., Auvinen, P., Tansey, M. G., & Scheperjans, F. (2021) · Molecular Neurodegeneration · doi:10.1186/s13024-021-00427-6 · Cited by 435

Microbial signals drive pre-leukaemic myeloproliferation in a Tet2-deficient host

Meisel, M., Hinterleitner, R., Pacis, A., Chen, L., Earley, Z. M., Mayassi, T., Pierre, J. F., Ernest, J. D., Galipeau, H. J., Thuille, N., et al. (2018) · Nature · doi:10.1038/s41586-018-0125-z · Cited by 406

Structure and function of the healthy pre-adolescent pediatric gut microbiome

Hollister, E. B., Riehle, K., Luna, R. A., Weidler, E. M., Rubio-Gonzales, M., Mistretta, T.-A., Raza, S., Doddapaneni, H. V., Metcalf, G. A., Muzny, D. M., et al. (2015) · Microbiome · doi:10.1186/s40168-015-0101-x · Cited by 406

Gut microbiome diversity is associated with sleep physiology in humans

Smith, R. P., Easson, C., Lyle, S. M., Kapoor, R., Donnelly, C. P., Davidson, E. J., Parikh, E., Lopez, J. V., & Tartar, J. L. (2019) · PLOS ONE · doi:10.1371/journal.pone.0222394 · Cited by 390

Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels

Alam, M. T., Amos, G. C. A., Murphy, A. R. J., Murch, S., Wellington, E. M. H., & Arasaradnam, R. P. (2020) · Gut Pathogens · doi:10.1186/s13099-019-0341-6 · Cited by 380

Biodiversity intervention enhances immune regulation and health-associated commensal microbiota among daycare children

Roslund, M. I., Puhakka, R., Grönroos, M., Nurminen, N., Oikarinen, S., Gazali, A. M., Cinek, O., Kramná, L., Siter, N., Vari, H. K., et al. (2020) · Science Advances · doi:10.1126/sciadv.aba2578 · Cited by 363

Gut microbiota in Parkinson's disease: Temporal stability and relations to disease progression

Aho, V. T. E., Pereira, P. A. B., Voutilainen, S., Paulin, L., Pekkonen, E., Auvinen, P., & Scheperjans, F. (2019) · eBioMedicine · doi:10.1016/j.ebiom.2019.05.064 · Cited by 361

Temporal dynamics of bacterial and fungal colonization on plastic debris in the North Sea

De Tender, C., Devriese, L. I., Haegeman, A., Maes, S., Vangeyte, J., Cattrijsse, A., Dawyndt, P., & Ruttink, T. (2017) · Environmental Science & Technology · doi:10.1021/acs.est.7b00697 · Cited by 355

Oligotyping analysis of the human oral microbiome

Eren, A. M., Borisy, G. G., Huse, S. M., & Mark Welch, J. L. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1409644111 · Cited by 347

Four Centuries of Change in Northeastern United States Forests

Thompson, J. R., Carpenter, D. N., Cogbill, C. V., & Foster, D. R. (2013) · PLoS ONE · doi:10.1371/journal.pone.0072540 · Cited by 331

Elevation alters ecosystem properties across temperate treelines globally

Mayor, J. R., Sanders, N. J., Classen, A. T., Bardgett, R. D., Clément, J.-C., Fajardo, A., Lavorel, S., Sundqvist, M. K., Bahn, M., Chisholm, C., et al. (2017) · Nature · doi:10.1038/nature21027 · Cited by 325

Airway microbiome dynamics in exacerbations of chronic obstructive pulmonary disease

Huang, Y. J., Sethi, S., Murphy, T., Nariya, S., Boushey, H. A., & Lynch, S. V. (2014) · Journal of Clinical Microbiology · doi:10.1128/jcm.00035-14 · Cited by 323

Tsunami-driven rafting: Transoceanic species dispersal and implications for marine biogeography

Carlton, J. T., Chapman, J. W., Geller, J. B., Miller, J. A., Carlton, D. A., McCuller, M. I., Treneman, N. C., Steves, B. P., & Ruiz, G. M. (2017) · Science · doi:10.1126/science.aao1498 · Cited by 320

Guidelines for the use of acoustic indices in environmental research

Bradfer‐Lawrence, T., Gardner, N., Bunnefeld, L., Bunnefeld, N., Willis, S. G., & Dent, D. H. (2019) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.13254 · Cited by 319

Seasonal Variation in Human Gut Microbiome Composition

Davenport, E. R., Mizrahi-Man, O., Michelini, K., Barreiro, L. B., Ober, C., & Gilad, Y. (2014) · PLoS ONE · doi:10.1371/journal.pone.0090731 · Cited by 314

Development of the Microbiota and Associations With Birth Mode, Diet, and Atopic Disorders in a Longitudinal Analysis of Stool Samples, Collected From Infancy Through Early Childhood

Galazzo, G., van Best, N., Bervoets, L., Dapaah, I. O., Savelkoul, P. H., Hornef, M. W., Hutton, E. K., Morrison, K., Holloway, A. C., McDonald, H., et al. (2020) · Gastroenterology · doi:10.1053/j.gastro.2020.01.024 · Cited by 308

Sewage Reflects the Microbiomes of Human Populations

Newton, R. J., McLellan, S. L., Dila, D. K., Vineis, J. H., Morrison, H. G., Eren, A. M., & Sogin, M. L. (2015) · mBio · doi:10.1128/mbio.02574-14 · Cited by 299

Evidence of Microplastic Translocation in Wild-Caught Fish and Implications for Microplastic Accumulation Dynamics in Food Webs

McIlwraith, H. K., Kim, J., Helm, P., Bhavsar, S. P., Metzger, J. S., & Rochman, C. M. (2021) · Environmental Science & Technology · doi:10.1021/acs.est.1c02922 · Cited by 295

Diagnostic potential and interactive dynamics of the colorectal cancer virome

Hannigan, G. D., Duhaime, M. B., Ruffin, M. T., Koumpouras, C. C., & Schloss, P. D. (2018) · mBio · doi:10.1128/mbio.02248-18 · Cited by 298

The prebiotics 3’Sialyllactose and 6’Sialyllactose diminish stressor-induced anxiety-like behavior and colonic microbiota alterations: evidence for effects on the gut-brain axis

Tarr, A. J., Galley, J. D., Fisher, S. E., Chichlowski, M., Berg, B. M., & Bailey, M. T. (2015) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2015.06.025 · Cited by 284

Microbiota in anorexia nervosa: The triangle between bacterial species, metabolites and psychological tests

Borgo, F., Riva, A., Benetti, A., Casiraghi, M. C., Bertelli, S., Garbossa, S., Anselmetti, S., Scarone, S., Pontiroli, A. E., Morace, G., et al. (2017) · PLOS ONE · doi:10.1371/journal.pone.0179739 · Cited by 267

Characterization of the gut microbial community of obese patients following a weight-loss intervention using whole metagenome shotgun sequencing

Louis, S., Tappu, R.-M., Damms-Machado, A., Huson, D. H., & Bischoff, S. C. (2016) · PLoS ONE · doi:10.1371/journal.pone.0149564 · Cited by 269

Soil bacterial and fungal response to wildfires in the Canadian boreal forest across a burn severity gradient

Whitman, T., Whitman, E., Woolet, J., Flannigan, M. D., Thompson, D. K., & Parisien, M.-A. (2019) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2019.107571 · Cited by 258

A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea

DiBattista, J. D., Roberts, M. B., Bouwmeester, J., Bowen, B. W., Coker, D. J., Lozano‐Cortés, D. F., Howard Choat, J., Gaither, M. R., Hobbs, J. A., Khalil, M. T., et al. (2016) · Journal of Biogeography · doi:10.1111/jbi.12649 · Cited by 252

Staphylococcus aureus and the ecology of the nasal microbiome

Liu, C. M., Price, L. B., Hungate, B. A., Abraham, A. G., Larsen, L. A., Christensen, K., Stegger, M., Skov, R., & Andersen, P. S. (2015) · Science Advances · doi:10.1126/sciadv.1400216 · Cited by 253

Gut Microbiome of Coexisting BaAka Pygmies and Bantu Reflects Gradients of Traditional Subsistence Patterns

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HIV infection is associated with compositional and functional shifts in the rectal mucosal microbiota

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