Student or educator? Sign up with your school email and get 6 months of Pro free.
Cited by 591

The DOI matches its Crossref record; 13 of the 13 references it cites were found in a registry or an index.

A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence

Open access
Balasubramanian, Deepak, Schneper, Lisa, Kumari, Hansi, Mathee, Kalai·2013·Nucleic Acids Research

Abstract

Pseudomonas aeruginosa is a metabolically versatile bacterium that is found in a wide range of biotic and abiotic habitats. It is a major human opportunistic pathogen causing numerous acute and chronic infections. The critical traits contributing to the pathogenic potential of P. aeruginosa are the production of a myriad of virulence factors, formation of biofilms and antibiotic resistance. Expression of these traits is under stringent regulation, and it responds to largely unidentified environmental signals. This review is focused on providing a global picture of virulence gene regulation in P. aeruginosa. In addition to key regulatory pathways that control the transition from acute to chronic infection phenotypes, some regulators have been identified that modulate multiple virulence mechanisms. Despite of a propensity for chaotic behaviour, no chaotic motifs were readily observed in the P. aeruginosa virulence regulatory network. Having a 'birds-eye' view of the regulatory cascades provides the forum opportunities to pose questions, formulate hypotheses and evaluate theories in elucidating P. aeruginosa pathogenesis. Understanding the mechanisms involved in making P. aeruginosa a successful pathogen is essential in helping devise control strategies.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1093/nar/gks1039

Cites

13 of 13 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Show all 13 references

Research works printed but not linked: 324

  1. Rahme, 2000, Plants and animals share functionally common bacterial virulence factors, Proc. Natl Acad. Sci. USA, 97, 8815, 10.1073/pnas.97.16.8815 · DOI · Paper page
  2. Mahajan-Miklos, 2000, Elucidating the molecular mechanisms of bacterial virulence using non-mammalian hosts, Mol. Microbiol., 37, 981, 10.1046/j.1365-2958.2000.02056.x · DOI · Paper page
  3. Kerr, 2009, Pseudomonas aeruginosa: a formidable and ever-present adversary, J. Hosp. Infect., 73, 338, 10.1016/j.jhin.2009.04.020 · DOI · Paper page
  4. Valderrey, 2010, Chronic colonization by Pseudomonas aeruginosa of patients with obstructive lung diseases: cystic fibrosis, bronchiectasis, and chronic obstructive pulmonary disease, Diagn. Microbiol. Infect. Dis., 68, 20, 10.1016/j.diagmicrobio.2010.04.008 · doi:10.1016/j.diagmicrobio.2010.04.008
  5. Bouza, 2002, Catheter-related infections: diagnosis and intravascular treatment, Clin. Microbiol. Infect., 8, 265, 10.1046/j.1469-0691.2002.00385.x · DOI · Paper page
  6. Manfredi, 2000, Pseudomonas spp. complications in patients with HIV disease: an eight-year clinical and microbiological survey, Eur. J. Epidemiol., 16, 111, 10.1023/A:1007626410724 · doi:10.1023/a:1007626410724
  7. Mizuno, 1997, Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli, DNA Res., 4, 161, 10.1093/dnares/4.2.161 · DOI · Paper page
  8. Fabret, 1999, Two-component signal transduction in Bacillus subtilis: how one organism sees its world, J. Bacteriol., 181, 1975, 10.1128/JB.181.7.1975-1983.1999 · DOI · Paper page
  9. Gooderham, 2009, Regulation of virulence and antibiotic resistance by two-component regulatory systems in Pseudomonas aeruginosa, FEMS Microbiol. Rev., 33, 279, 10.1111/j.1574-6976.2008.00135.x · DOI · Paper page
  10. Buelow, 2010, Three (and more) component regulatory systems - auxiliary regulators of bacterial histidine kinases, Mol. Microbiol., 75, 547, 10.1111/j.1365-2958.2009.06982.x · doi:10.1111/j.1365-2958.2009.06982.x
  11. Ng, 2009, Bacterial quorum-sensing network architectures, Annu. Rev. Genet., 43, 197, 10.1146/annurev-genet-102108-134304 · DOI · Paper page
  12. Harmsen, 2010, An update on Pseudomonas aeruginosa biofilm formation, tolerance, and dispersal, FEMS Immunol. Med. Microbiol., 59, 253, 10.1111/j.1574-695X.2010.00690.x · DOI · Paper page
  13. Njoroge, 2009, Jamming bacterial communication: new approaches for the treatment of infectious diseases, EMBO Mol. Med., 1, 201, 10.1002/emmm.200900032 · DOI · Paper page
  14. Burns, 2001, Longitudinal assessment of Pseudomonas aeruginosa in young children with cystic fibrosis, J. Infect. Dis., 183, 444, 10.1086/318075 · DOI · Paper page
  15. Hogardt, 2012, Microevolution of Pseudomonas aeruginosa to a chronic pathogen of the cystic fibrosis lung, Curr. Top. Microbiol. Immunol.
  16. Coggan, 2012, Global regulatory pathways and cross-talk control Pseudomonas aeruginosa environmental lifestyle and virulence phenotype, Curr. Issues Mol. Biol., 14, 47
  17. Hoboth, 2009, Dynamics of adaptive microevolution of hypermutable Pseudomonas aeruginosa during chronic pulmonary infection in patients with cystic fibrosis, J. Infect. Dis., 200, 118, 10.1086/599360 · DOI · Paper page
  18. Hogardt, 2007, Stage-specific adaptation of hypermutable Pseudomonas aeruginosa isolates during chronic pulmonary infection in patients with cystic fibrosis, J. Infect. Dis., 195, 70, 10.1086/509821 · DOI
  19. Oliver, 2010, Bacterial hypermutation in cystic fibrosis, not only for antibiotic resistance, Clin. Microbiol. Infect., 16, 798, 10.1111/j.1469-0691.2010.03250.x · DOI · Paper page
  20. Hassett, 2009, Pseudomonas aeruginosa hypoxic or anaerobic biofilm infections within cystic fibrosis airways, Trends Microbiol., 17, 130, 10.1016/j.tim.2008.12.003 · DOI · Paper page
  21. Goodman, 2004, A signaling network reciprocally regulates genes associated with acute infection and chronic persistence in Pseudomonas aeruginosa, Dev. Cell, 7, 745, 10.1016/j.devcel.2004.08.020 · DOI · Paper page
  22. Ventre, 2006, Multiple sensors control reciprocal expression of Pseudomonas aeruginosa regulatory RNA and virulence genes, Proc. Natl Acad. Sci. USA, 103, 171, 10.1073/pnas.0507407103 · DOI · Paper page
  23. Balasubramanian, 2012, The regulatory repertoire of Pseudomonas aeruginosa AmpC ß-lactamase regulator AmpR includes virulence genes, PLoS One, 7, e34067, 10.1371/journal.pone.0034067 · DOI
  24. Stover, 2000, Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen, Nature, 406, 959, 10.1038/35023079 · DOI · Paper page
  25. Mathee, 2008, Dynamics of Pseudomonas aeruginosa genome evolution, Proc. Natl Acad. Sci. USA, 105, 3100, 10.1073/pnas.0711982105 · DOI · Paper page
  26. Winsor, 2011, Pseudomonas genome database: improved comparative analysis and population genomics capability for Pseudomonas genomes, Nucleic Acids Res., 39, D596, 10.1093/nar/gkq869 · DOI · Paper page
  27. Balasubramanian, 2013, Bacterial Gene Regulation and Transcriptional Networks
  28. Potvin, 2008, Sigma factors in Pseudomonas aeruginosa, FEMS Microbiol. Rev., 32, 38, 10.1111/j.1574-6976.2007.00092.x · DOI · Paper page
  29. Livny, 2006, Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2, Nucleic Acids Res., 34, 3484, 10.1093/nar/gkl453 · DOI · Paper page
  30. Galan-Vasquez, 2011, The regulatory network of Pseudomonas aeruginosa, Microb. Inform. Exp., 1, 3, 10.1186/2042-5783-1-3 · DOI
  31. Babu, 2006, Evolutionary dynamics of prokaryotic transcriptional regulatory networks, J. Mol. Biol., 358, 614, 10.1016/j.jmb.2006.02.019 · DOI · Paper page
  32. Balasubramanian, 2009, Comparative transcriptome analyses of Pseudomonas aeruginosa, Hum. Genomics, 3, 349, 10.1186/1479-7364-3-4-361 · DOI
  33. Goodman, 2004, Analysis of regulatory networks in Pseudomonas aeruginosa by genomewide transcriptional profiling, Curr. Opin. Microbiol., 7, 39, 10.1016/j.mib.2003.12.009 · DOI
  34. Levine, 2010, Transcriptional enhancers in animal development and evolution, Curr. Biol., 20, R754, 10.1016/j.cub.2010.06.070 · DOI · Paper page
  35. Ishihama, 2010, Prokaryotic genome regulation: multifactor promoters, multitarget regulators and hierarchic networks, FEMS Microbiol. Rev., 34, 628, 10.1111/j.1574-6976.2010.00227.x · DOI · Paper page
  36. Storz, 2011, Regulation by small RNAs in bacteria: expanding frontiers, Mol. Cell, 43, 880, 10.1016/j.molcel.2011.08.022 · DOI · Paper page
  37. Waters, 2009, Regulatory RNAs in bacteria, Cell, 136, 615, 10.1016/j.cell.2009.01.043 · DOI · Paper page
  38. Reitzer, 1986, Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter, Cell, 45, 785, 10.1016/0092-8674(86)90553-2 · DOI · Paper page
  39. Popham, 1989, Function of a bacterial activator protein that binds to transcriptional enhancers, Science, 243, 629, 10.1126/science.2563595 · DOI · Paper page
  40. Buck, 2000, The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor, J. Bacteriol., 182, 4129, 10.1128/JB.182.15.4129-4136.2000 · DOI · Paper page
  41. Mohr, 1992, AlgR-binding sites within the algD promoter make up a set of inverted repeats separated by a large intervening segment of DNA, J. Bacteriol., 174, 6624, 10.1128/jb.174.20.6624-6633.1992 · doi:10.1128/jb.174.20.6624-6633.1992
  42. Ramsey, 2005, Binding of Pseudomonas aeruginosa AlgZ to sites upstream of the algZ promoter leads to repression of transcription, J. Bacteriol., 187, 4430, 10.1128/JB.187.13.4430-4443.2005 · DOI
  43. Winteler, 1996, The homologous regulators ANR of Pseudomonas aeruginosa and FNR of Escherichia coli have overlapping but distinct specificities for anaerobically inducible promoters, Microbiology, 142, 685, 10.1099/13500872-142-3-685 · DOI · Paper page
  44. Lu, 1999, The ArgR regulatory protein, a helper to the anaerobic regulator ANR during transcriptional activation of the arcD promoter in Pseudomonas aeruginosa, J. Bacteriol., 181, 2459, 10.1128/JB.181.8.2459-2464.1999 · DOI
  45. Hovey, 1995, Analyses of the DNA-binding and transcriptional activation properties of ExsA, the transcriptional activator of the Pseudomonas aeruginosa exoenzyme S regulon, J. Bacteriol., 177, 4427, 10.1128/jb.177.15.4427-4436.1995 · doi:10.1128/jb.177.15.4427-4436.1995
  46. Baraquet, 2012, The FleQ protein from Pseudomonas aeruginosa functions as both a repressor and an activator to control gene expression from the pel operon promoter in response to c-di-GMP, Nucleic Acids Res., 40, 7207, 10.1093/nar/gks384 · DOI · Paper page
  47. Ochsner, 1995, Role of the ferric uptake regulator of Pseudomonas aeruginosa in the regulation of siderophores and exotoxin A expression: purification and activity on iron-regulated promoters, J. Bacteriol., 177, 7194, 10.1128/jb.177.24.7194-7201.1995 · DOI · Paper page
  48. Wagner, 2003, Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environment, J. Bacteriol., 185, 2080, 10.1128/JB.185.7.2080-2095.2003 · DOI · Paper page
  49. Tian, 2009, Transcriptome profiling defines a novel regulon modulated by the LysR-type transcriptional regulator MexT in Pseudomonas aeruginosa, Nucleic Acids Res., 37, 7546, 10.1093/nar/gkp828 · DOI
  50. Xiao, 2006, Mutation analysis of the Pseudomonas aeruginosa mvfR and pqsABCDE gene promoters demonstrates complex quorum-sensing circuitry, Microbiology, 152, 1679, 10.1099/mic.0.28605-0 · DOI
  51. Kojic, 2002, TetR family member psrA directly binds the Pseudomonas rpoS and psrA promoters, J. Bacteriol., 184, 2324, 10.1128/JB.184.8.2324-2330.2002 · doi:10.1128/jb.184.8.2324-2330.2002
  52. Nicastro, 2009, Pseudomonas aeruginosa PA14 cupD transcription is activated by the RcsB response regulator, but repressed by its putative cognate sensor RcsC, FEMS Microbiol. Lett., 301, 115, 10.1111/j.1574-6968.2009.01803.x · doi:10.1111/j.1574-6968.2009.01803.x
  53. Pearson, 1997, Roles of Pseudomonas aeruginosa las and rhl quorum-sensing systems in control of elastase and rhamnolipid biosynthesis genes, J. Bacteriol., 179, 5756, 10.1128/jb.179.18.5756-5767.1997 · DOI · Paper page
  54. Dasgupta, 2002, fleQ, the gene encoding the major flagellar regulator of Pseudomonas aeruginosa, is sigma70 dependent and is downregulated by Vfr, a homolog of Escherichia coli cyclic AMP receptor protein, J. Bacteriol., 184, 5240, 10.1128/JB.184.19.5240-5250.2002 · doi:10.1128/jb.184.19.5240-5250.2002
  55. Liang, 2012, The Pseudomonas aeruginosa global regulator VqsR directly inhibits QscR to control quorum-sensing and virulence gene expression, J. Bacteriol., 194, 3098, 10.1128/JB.06679-11 · doi:10.1128/jb.06679-11
  56. Stevens, 2012, Working together for the common good: cell-cell communication in bacteria, J. Bacteriol., 194, 2131, 10.1128/JB.00143-12 · DOI
  57. Williams, 2009, Quorum sensing and environmental adaptation in Pseudomonas aeruginosa: a tale of regulatory networks and multifunctional signal molecules, Curr. Opin. Microbiol., 12, 182, 10.1016/j.mib.2009.01.005 · DOI · Paper page
  58. Jimenez, 2012, The multiple signaling systems regulating virulence in Pseudomonas aeruginosa, Microbiol. Mol. Biol. Rev., 76, 46, 10.1128/MMBR.05007-11 · DOI · Paper page
  59. Schuster, 2006, A network of networks: quorum-sensing gene regulation in Pseudomonas aeruginosa, Int. J. Med. Microbiol., 296, 73, 10.1016/j.ijmm.2006.01.036 · DOI · Paper page
  60. Passador, 1993, Expression of Pseudomonas aeruginosa virulence genes requires cell-to-cell communication, Science, 260, 1127, 10.1126/science.8493556 · DOI · Paper page
  61. Pearson, 1994, Structure of the autoinducer required for expression of Pseudomonas aeruginosa virulence genes, Proc. Natl Acad. Sci. USA, 91, 197, 10.1073/pnas.91.1.197 · DOI · Paper page
  62. Brint, 1995, Synthesis of multiple exoproducts in Pseudomonas aeruginosa is under the control of RhlR-RhlI, another set of regulators in strain PAO1 with homology to the autoinducer-responsive LuxR-LuxI family, J. Bacteriol., 177, 7155, 10.1128/jb.177.24.7155-7163.1995 · DOI · Paper page
  63. Latifi, 1995, Multiple homologues of LuxR and LuxI control expression of virulence determinants and secondary metabolites through quorum sensing in Pseudomonas aeruginosa PAO1, Mol. Microbiol., 17, 333, 10.1111/j.1365-2958.1995.mmi_17020333.x · DOI · Paper page
  64. Ochsner, 1995, Autoinducer-mediated regulation of rhamnolipid biosurfactant synthesis in Pseudomonas aeruginosa, Proc. Natl Acad. Sci. USA, 92, 6424, 10.1073/pnas.92.14.6424 · DOI · Paper page
  65. Pearson, 1995, A second N-acylhomoserine lactone signal produced by Pseudomonas aeruginosa, Proc. Natl Acad. Sci. USA, 92, 1490, 10.1073/pnas.92.5.1490 · DOI · Paper page
  66. Kiratisin, 2002, LasR, a transcriptional activator of Pseudomonas aeruginosa virulence genes, functions as a multimer, J. Bacteriol., 184, 4912, 10.1128/JB.184.17.4912-4919.2002 · DOI · Paper page
  67. Lamb, 2003, Functional domains of the RhlR transcriptional regulator of Pseudomonas aeruginosa, J. Bacteriol., 185, 7129, 10.1128/JB.185.24.7129-7139.2003 · doi:10.1128/jb.185.24.7129-7139.2003
  68. Schuster, 2004, Promoter specificity in Pseudomonas aeruginosa quorum sensing revealed by DNA binding of purified LasR, Proc. Natl Acad. Sci. USA, 101, 15833, 10.1073/pnas.0407229101 · DOI · Paper page
  69. Schuster, 2007, Early activation of quorum sensing in Pseudomonas aeruginosa reveals the architecture of a complex regulon, BMC Genomics, 8, 287, 10.1186/1471-2164-8-287 · DOI · Paper page
  70. Diggle, 2007, The Pseudomonas aeruginosa 4-quinolone signal molecules HHQ and PQS play multifunctional roles in quorum sensing and iron entrapment, Chem. Biol., 14, 87, 10.1016/j.chembiol.2006.11.014 · DOI · Paper page
  71. Xiao, 2006, MvfR, a key Pseudomonas aeruginosa pathogenicity LTTR-class regulatory protein, has dual ligands, Mol. Microbiol., 62, 1689, 10.1111/j.1365-2958.2006.05462.x · DOI · Paper page
  72. Deziel, 2005, The contribution of MvfR to Pseudomonas aeruginosa pathogenesis and quorum sensing circuitry regulation: multiple quorum sensing-regulated genes are modulated without affecting lasRI, rhlRI or the production of N-acyl-L-homoserine lactones, Mol. Microbiol., 55, 998, 10.1111/j.1365-2958.2004.04448.x · DOI · Paper page
  73. Bredenbruch, 2006, The Pseudomonas aeruginosa quinolone signal (PQS) has an iron-chelating activity, Environ. Microbiol., 8, 1318, 10.1111/j.1462-2920.2006.01025.x · DOI · Paper page
  74. Mashburn, 2005, Membrane vesicles traffic signals and facilitate group activities in a prokaryote, Nature, 437, 422, 10.1038/nature03925 · DOI · Paper page
  75. Schertzer, 2012, A bilayer-couple model of bacterial outer membrane vesicle biogenesis, MBio, 3, e00297, 10.1128/mBio.00297-11 · DOI · Paper page
  76. Liang, 2008, The YebC family protein PA0964 negatively regulates the Pseudomonas aeruginosa quinolone signal system and pyocyanin production, J. Bacteriol., 190, 6217, 10.1128/JB.00428-08 · doi:10.1128/jb.00428-08
  77. Wagner, 2007, Analysis of the hierarchy of quorum-sensing regulation in Pseudomonas aeruginosa, Anal. Bioanal. Chem., 387, 469, 10.1007/s00216-006-0964-6 · DOI
  78. Latifi, 1996, A hierarchical quorum-sensing cascade in Pseudomonas aeruginosa links the transcriptional activators LasR and RhIR (VsmR) to expression of the stationary-phase sigma factor RpoS, Mol. Microbiol., 21, 1137, 10.1046/j.1365-2958.1996.00063.x · DOI · Paper page
  79. McGrath, 2004, Dueling quorum sensing systems in Pseudomonas aeruginosa control the production of the Pseudomonas quinolone signal (PQS), FEMS Microbiol. Lett., 230, 27, 10.1016/S0378-1097(03)00849-8 · DOI · Paper page
  80. Pesci, 1997, Regulation of las and rhl quorum sensing in Pseudomonas aeruginosa, J. Bacteriol., 179, 3127, 10.1128/jb.179.10.3127-3132.1997 · DOI · Paper page
  81. Dekimpe, 2009, Revisiting the quorum-sensing hierarchy in Pseudomonas aeruginosa: the transcriptional regulator RhlR regulates LasR-specific factors, Microbiology, 155, 712, 10.1099/mic.0.022764-0 · DOI · Paper page
  82. Duan, 2007, Environmental regulation of Pseudomonas aeruginosa PAO1 Las and Rhl quorum-sensing systems, J. Bacteriol., 189, 4827, 10.1128/JB.00043-07 · DOI · Paper page
  83. Schuster, 2004, The Pseudomonas aeruginosa RpoS regulon and its relationship to quorum sensing, Mol. Microbiol., 51, 973, 10.1046/j.1365-2958.2003.03886.x · DOI · Paper page
  84. Gilbert, 2009, Global position analysis of the Pseudomonas aeruginosa quorum-sensing transcription factor LasR, Mol. Microbiol., 73, 1072, 10.1111/j.1365-2958.2009.06832.x · DOI · Paper page
  85. Castang, 2008, H-NS family members function coordinately in an opportunistic pathogen, Proc. Natl Acad. Sci. USA, 105, 18947, 10.1073/pnas.0808215105 · doi:10.1073/pnas.0808215105
  86. Rampioni, 2007, RsaL provides quorum sensing homeostasis and functions as a global regulator of gene expression in Pseudomonas aeruginosa, Mol. Microbiol., 66, 1557, 10.1111/j.1365-2958.2007.06029.x · doi:10.1111/j.1365-2958.2007.06029.x
  87. Rampioni, 2009, Contribution of the RsaL global regulator to Pseudomonas aeruginosa virulence and biofilm formation, FEMS Microbiol. Lett., 301, 210, 10.1111/j.1574-6968.2009.01817.x · doi:10.1111/j.1574-6968.2009.01817.x
  88. Wei, 2012, Global regulation of gene expression by OxyR in an important human opportunistic pathogen, Nucleic Acids Res., 40, 4320, 10.1093/nar/gks017 · DOI · Paper page
  89. Dieppois, 2012, The transcriptional regulator CzcR modulates antibiotic resistance and quorum sensing in Pseudomonas aeruginosa, PLoS One, 7, e38148, 10.1371/journal.pone.0038148 · DOI
  90. Perron, 2004, CzcR-CzcS, a two-component system involved in heavy metal and carbapenem resistance in Pseudomonas aeruginosa, J. Biol. Chem., 279, 8761, 10.1074/jbc.M312080200 · DOI · Paper page
  91. Juhas, 2004, Global regulation of quorum sensing and virulence by VqsR in Pseudomonas aeruginosa, Microbiology, 150, 831, 10.1099/mic.0.26906-0 · DOI · Paper page
  92. Li, 2007, Regulation of the Pseudomonas aeruginosa quorum-sensing regulator VqsR, J. Bacteriol., 189, 4367, 10.1128/JB.00007-07 · doi:10.1128/jb.00007-07
  93. Liang, 2012, The Pseudomonas aeruginosa global regulator VqsR directly inhibits QscR to control quorum-sensing and virulence gene expression, J. Bacteriol., 194, 3098, 10.1128/JB.06679-11 · doi:10.1128/jb.06679-11
  94. Lee, 2006, Activity of purified QscR, a Pseudomonas aeruginosa orphan quorum-sensing transcription factor, Mol. Microbiol., 59, 602, 10.1111/j.1365-2958.2005.04960.x · DOI · Paper page
  95. Lequette, 2006, A distinct QscR regulon in the Pseudomonas aeruginosa quorum-sensing circuit, J. Bacteriol., 188, 3365, 10.1128/JB.188.9.3365-3370.2006 · DOI · Paper page
  96. Ledgham, 2003, Interactions of the quorum sensing regulator QscR: interaction with itself and the other regulators of Pseudomonas aeruginosa LasR and RhlR, Mol. Microbiol., 48, 199, 10.1046/j.1365-2958.2003.03423.x · doi:10.1046/j.1365-2958.2003.03423.x
  97. Chugani, 2001, QscR, a modulator of quorum-sensing signal synthesis and virulence in Pseudomonas aeruginosa, Proc. Natl Acad. Sci. USA, 98, 2752, 10.1073/pnas.051624298 · DOI · Paper page
  98. Dong, 2005, VqsM, a novel AraC-type global regulator of quorum-sensing signalling and virulence in Pseudomonas aeruginosa, Mol. Microbiol., 58, 552, 10.1111/j.1365-2958.2005.04851.x · doi:10.1111/j.1365-2958.2005.04851.x
  99. Deziel, 2004, Analysis of Pseudomonas aeruginosa 4-hydroxy-2-alkylquinolines (HAQs) reveals a role for 4-hydroxy-2-heptylquinoline in cell-to-cell communication, Proc. Natl Acad. Sci. USA, 101, 1339, 10.1073/pnas.0307694100 · DOI · Paper page
  100. Gallagher, 2002, Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa, J. Bacteriol., 184, 6472, 10.1128/JB.184.23.6472-6480.2002 · DOI · Paper page
  101. Farrow, 2007, Two distinct pathways supply anthranilate as a precursor of the Pseudomonas quinolone signal, J. Bacteriol., 189, 3425, 10.1128/JB.00209-07 · DOI · Paper page
  102. Chugani, 2010, LuxR homolog-independent gene regulation by acyl-homoserine lactones in Pseudomonas aeruginosa, Proc. Natl Acad. Sci. USA, 107, 10673, 10.1073/pnas.1005909107 · DOI
  103. Siehnel, 2010, A unique regulator controls the activation threshold of quorum-regulated genes in Pseudomonas aeruginosa, Proc. Natl Acad. Sci. USA, 107, 7916, 10.1073/pnas.0908511107 · doi:10.1073/pnas.0908511107
  104. Pessi, 2001, The global posttranscriptional regulator RsmA modulates production of virulence determinants and N-acylhomoserine lactones in Pseudomonas aeruginosa, J. Bacteriol., 183, 6676, 10.1128/JB.183.22.6676-6683.2001 · DOI
  105. Sonnleitner, 2006, Hfq-dependent alterations of the transcriptome profile and effects on quorum sensing in Pseudomonas aeruginosa, Mol. Microbiol., 59, 1542, 10.1111/j.1365-2958.2006.05032.x · DOI · Paper page
  106. Kong, 2005, Pseudomonas aeruginosa AmpR is a global transcriptional factor that regulates expression of AmpC and PoxB beta-lactamases, proteases, quorum sensing, and other virulence factors, Antimicrob. Agents Chemother., 49, 4567, 10.1128/AAC.49.11.4567-4575.2005 · doi:10.1128/aac.49.11.4567-4575.2005
  107. Balasubramanian, 2011, Co-regulation of ß-lactam resistance, alginate production and quorum sensing in Pseudomonas aeruginosa, J. Med. Microbiol., 60, 147, 10.1099/jmm.0.021600-0 · DOI
  108. Rodrigue, 2000, Two-component systems in Pseudomonas aeruginosa: why so many?, Trends Microbiol., 8, 498, 10.1016/S0966-842X(00)01833-3 · DOI · Paper page
  109. Raghavan, 2010, Orphan and hybrid two-component system proteins in health and disease, Curr. Opin. Microbiol., 13, 226, 10.1016/j.mib.2009.12.010 · DOI
  110. Stock, 2000, Two-component signal transduction, Annu. Rev. Biochem., 69, 183, 10.1146/annurev.biochem.69.1.183 · DOI · Paper page
  111. Laub, 2007, Specificity in two-component signal transduction pathways, Annu. Rev. Genet., 41, 121, 10.1146/annurev.genet.41.042007.170548 · DOI · Paper page
  112. Mascher, 2006, Stimulus perception in bacterial signal-transducing histidine kinases, Microbiol. Mol. Biol. Rev., 70, 910, 10.1128/MMBR.00020-06 · DOI · Paper page
  113. Gao, 2010, Molecular strategies for phosphorylation-mediated regulation of response regulator activity, Curr. Opin. Microbiol., 13, 160, 10.1016/j.mib.2009.12.009 · DOI · Paper page
  114. Mitrophanov, 2008, Signal integration in bacterial two-component regulatory systems, Genes Dev., 22, 2601, 10.1101/gad.1700308 · DOI · Paper page
  115. Kitten, 1998, A newly identified regulator is required for virulence and toxin production in Pseudomonas syringae, Mol. Microbiol., 28, 917, 10.1046/j.1365-2958.1998.00842.x · DOI
  116. Coleman, 2003, Hypersusceptibility of cystic fibrosis mice to chronic Pseudomonas aeruginosa oropharyngeal colonization and lung infection, Proc. Natl Acad. Sci. USA, 100, 1949, 10.1073/pnas.0437901100 · DOI
  117. Hrabak, 1992, The lemA gene required for pathogenicity of Pseudomonas syringae pv. syringae on bean is a member of a family of two-component regulators, J. Bacteriol., 174, 3011, 10.1128/jb.174.9.3011-3020.1992 · DOI · Paper page
  118. Goodman, 2009, Direct interaction between sensor kinase proteins mediates acute and chronic disease phenotypes in a bacterial pathogen, Genes Dev., 23, 249, 10.1101/gad.1739009 · DOI · Paper page
  119. Heeb, 2001, Regulatory roles of the GacS/GacA two-component system in plant-associated and other Gram-negative bacteria, Mol. Plant Microbe Interact., 14, 1351, 10.1094/MPMI.2001.14.12.1351 · DOI · Paper page
  120. Wolfgang, 2003, Coordinate regulation of bacterial virulence genes by a novel adenylate cyclase-dependent signaling pathway, Dev. Cell, 4, 253, 10.1016/S1534-5807(03)00019-4 · DOI · Paper page
  121. Brencic, 2009, Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA, Mol. Microbiol., 72, 612, 10.1111/j.1365-2958.2009.06670.x · DOI · Paper page
  122. Linares, 2006, Antibiotics as intermicrobial signaling agents instead of weapons, Proc. Natl Acad. Sci. USA, 103, 19484, 10.1073/pnas.0608949103 · DOI · Paper page
  123. McPhee, 2006, Contribution of the PhoP-PhoQ and PmrA-PmrB two-component regulatory systems to Mg2+-induced gene regulation in Pseudomonas aeruginosa, J. Bacteriol., 188, 3995, 10.1128/JB.00053-06 · DOI · Paper page
  124. Macfarlane, 2000, Role of Pseudomonas aeruginosa PhoP-PhoQ in resistance to antimicrobial cationic peptides and aminoglycosides, Microbiology, 146, 2543, 10.1099/00221287-146-10-2543 · DOI · Paper page
  125. Gooderham, 2009, The sensor kinase PhoQ mediates virulence in Pseudomonas aeruginosa, Microbiology, 155, 699, 10.1099/mic.0.024554-0 · DOI
  126. McPhee, 2003, Cationic antimicrobial peptides activate a two-component regulatory system, PmrA-PmrB, that regulates resistance to polymyxin B and cationic antimicrobial peptides in Pseudomonas aeruginosa, Mol. Microbiol., 50, 205, 10.1046/j.1365-2958.2003.03673.x · DOI · Paper page
  127. Kwon, 2006, Polyamines induce resistance to cationic peptide, aminoglycoside, and quinolone antibiotics in Pseudomonas aeruginosa PAO1, Antimicrob. Agents Chemother., 50, 1615, 10.1128/AAC.50.5.1615-1622.2006 · DOI
  128. Kwon, 2007, Polyamine effects on antibiotic susceptibility in bacteria, Antimicrob. Agents Chemother., 51, 2070, 10.1128/AAC.01472-06 · DOI
  129. Flemming, 2010, The biofilm matrix, Nat. Rev. Microbiol., 8, 623, 10.1038/nrmicro2415 · DOI · Paper page
  130. Lopez, 2010, Biofilms, Cold Spring Harb Perspect. Biol., 2, a000398, 10.1101/cshperspect.a000398 · DOI · Paper page
  131. Stapper, 2004, Alginate production affects Pseudomonas aeruginosa biofilm development and architecture, but is not essential for biofilm formation, J. Med. Microbiol., 53, 679, 10.1099/jmm.0.45539-0 · DOI · Paper page
  132. Klausen, 2003, Biofilm formation by Pseudomonas aeruginosa wild type, flagella and type IV pili mutants, Mol. Microbiol., 48, 1511, 10.1046/j.1365-2958.2003.03525.x · DOI · Paper page
  133. Caiazza, 2004, SadB is required for the transition from reversible to irreversible attachment during biofilm formation by Pseudomonas aeruginosa PA14, J. Bacteriol., 186, 4476, 10.1128/JB.186.14.4476-4485.2004 · DOI · Paper page
  134. Merritt, 2007, SadC reciprocally influences biofilm formation and swarming motility via modulation of exopolysaccharide production and flagellar function, J. Bacteriol., 189, 8154, 10.1128/JB.00585-07 · DOI · Paper page
  135. Vallet, 2001, The chaperone/usher pathways of Pseudomonas aeruginosa: identification of fimbrial gene clusters (cup) and their involvement in biofilm formation, Proc. Natl Acad. Sci. USA, 98, 6911, 10.1073/pnas.111551898 · DOI · Paper page
  136. Vallet, 2004, Biofilm formation in Pseudomonas aeruginosa: fimbrial cup gene clusters are controlled by the transcriptional regulator MvaT, J. Bacteriol., 186, 2880, 10.1128/JB.186.9.2880-2890.2004 · DOI
  137. Vallet-Gely, 2005, Repression of phase-variable cup gene expression by H-NS-like proteins in Pseudomonas aeruginosa, Proc. Natl Acad. Sci. USA, 102, 11082, 10.1073/pnas.0502663102 · DOI
  138. Kulasekara, 2005, A novel two-component system controls the expression of Pseudomonas aeruginosa fimbrial cup genes, Mol. Microbiol., 55, 368, 10.1111/j.1365-2958.2004.04402.x · DOI · Paper page
  139. Merkel, 1998, Characterization of the bvgR locus of Bordetella pertussis, J. Bacteriol., 180, 1682, 10.1128/JB.180.7.1682-1690.1998 · DOI
  140. Kuchma, 2005, A three-component regulatory system regulates biofilm maturation and type III secretion in Pseudomonas aeruginosa, J. Bacteriol., 187, 1441, 10.1128/JB.187.4.1441-1454.2005 · DOI · Paper page
  141. Mikkelsen, 2009, Expression of Pseudomonas aeruginosa CupD fimbrial genes is antagonistically controlled by RcsB and the EAL-containing PvrR response regulators, PLoS One, 4, e6018, 10.1371/journal.pone.0006018 · DOI
  142. Hickman, 2005, A chemosensory system that regulates biofilm formation through modulation of cyclic diguanylate levels, Proc. Natl Acad. Sci. USA, 102, 14422, 10.1073/pnas.0507170102 · DOI · Paper page
  143. Guvener, 2007, Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces, Mol. Microbiol., 66, 1459, 10.1111/j.1365-2958.2007.06008.x · DOI · Paper page
  144. Choy, 2004, MorA defines a new class of regulators affecting flagellar development and biofilm formation in diverse Pseudomonas species, J. Bacteriol., 186, 7221, 10.1128/JB.186.21.7221-7228.2004 · DOI
  145. Ueda, 2009, Connecting quorum sensing, c-di-GMP, pel polysaccharide, and biofilm formation in Pseudomonas aeruginosa through tyrosine phosphatase TpbA (PA3885), PLoS Pathog., 5, e1000483, 10.1371/journal.ppat.1000483 · DOI · Paper page
  146. Hickman, 2008, Identification of FleQ from Pseudomonas aeruginosa as a c-di-GMP-responsive transcription factor, Mol. Microbiol., 69, 376, 10.1111/j.1365-2958.2008.06281.x · DOI · Paper page
  147. Attila, 2008, PA2663 (PpyR) increases biofilm formation in Pseudomonas aeruginosa PAO1 through the psl operon and stimulates virulence and quorum-sensing phenotypes, Appl. Microbiol. Biotechnol., 78, 293, 10.1007/s00253-007-1308-y · DOI
  148. D'Argenio, 2002, Autolysis and autoaggregation in Pseudomonas aeruginosa colony morphology mutants, J. Bacteriol., 184, 6481, 10.1128/JB.184.23.6481-6489.2002 · DOI · Paper page
  149. Allesen-Holm, 2006, A characterization of DNA release in Pseudomonas aeruginosa cultures and biofilms, Mol. Microbiol., 59, 1114, 10.1111/j.1365-2958.2005.05008.x · DOI · Paper page
  150. Heurlier, 2005, Quorum-sensing-negative (lasR) mutants of Pseudomonas aeruginosa avoid cell lysis and death, J. Bacteriol., 187, 4875, 10.1128/JB.187.14.4875-4883.2005 · DOI · Paper page
  151. Whitchurch, 2002, Extracellular DNA required for bacterial biofilm formation, Science, 295, 1487, 10.1126/science.295.5559.1487 · DOI · Paper page
  152. Dominiak, 2010, Extracellular DNA is abundant and important for microcolony strength in mixed microbial biofilms, Environ. Microbiol., 13, 710, 10.1111/j.1462-2920.2010.02375.x · DOI · Paper page
  153. Pamp, 2007, Multiple roles of biosurfactants in structural biofilm development by Pseudomonas aeruginosa, J. Bacteriol., 189, 2531, 10.1128/JB.01515-06 · DOI · Paper page
  154. Davey, 2003, Rhamnolipid surfactant production affects biofilm architecture in Pseudomonas aeruginosa PAO1, J. Bacteriol., 185, 1027, 10.1128/JB.185.3.1027-1036.2003 · DOI · Paper page
  155. Petrova, 2009, A novel signaling network essential for regulating Pseudomonas aeruginosa biofilm development, PLoS Pathog., 5, e1000668, 10.1371/journal.ppat.1000668 · DOI · Paper page
  156. Petrova, 2011, SagS contributes to the motile-sessile switch and acts in concert with BfiSR to enable Pseudomonas aeruginosa biofilm formation, J. Bacteriol., 193, 6614, 10.1128/JB.00305-11 · DOI
  157. Janjua, 2012, Clinical populations of Pseudomonas aeruginosa isolated from acute infections show a wide virulence range partially correlated with population structure and virulence gene expression, Microbiology, 158, 2089, 10.1099/mic.0.056689-0 · DOI
  158. Storey, 1998, Pseudomonas aeruginosa lasR transcription correlates with the transcription of lasA, lasB, and toxA in chronic lung infections associated with cystic fibrosis, Infect. Immun., 66, 2521, 10.1128/IAI.66.6.2521-2528.1998 · DOI · Paper page
  159. Singh, 2000, Quorum-sensing signals indicate that cystic fibrosis lungs are infected with bacterial biofilms, Nature, 407, 762, 10.1038/35037627 · DOI · Paper page
  160. Wu, 2001, Pseudomonas aeruginosa mutations in lasI and rhlI quorum sensing systems result in milder chronic lung infection, Microbiology, 147, 1105, 10.1099/00221287-147-5-1105 · DOI · Paper page
  161. Bjarnsholt, 2005, Pseudomonas aeruginosa tolerance to tobramycin, hydrogen peroxide and polymorphonuclear leukocytes is quorum-sensing dependent, Microbiology, 151, 373, 10.1099/mic.0.27463-0 · DOI · Paper page
  162. Purevdorj, 2002, Influence of hydrodynamics and cell signaling on the structure and behavior of Pseudomonas aeruginosa biofilms, Appl. Environ. Microbiol., 68, 4457, 10.1128/AEM.68.9.4457-4464.2002 · DOI · Paper page
  163. Heydorn, 2002, Statistical analysis of Pseudomonas aeruginosa biofilm development: impact of mutations in genes involved in twitching motility, cell-to-cell signaling, and stationary-phase sigma factor expression, Appl. Environ. Microbiol., 68, 2008, 10.1128/AEM.68.4.2008-2017.2002 · DOI · Paper page
  164. Smith, 2006, Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients, Proc. Natl Acad. Sci. USA, 103, 8487, 10.1073/pnas.0602138103 · DOI · Paper page
  165. Van Delden, 1998, Starvation selection restores elastase and rhamnolipid production in a Pseudomonas aeruginosa quorum-sensing mutant, Infect. Immun., 66, 4499, 10.1128/IAI.66.9.4499-4502.1998 · DOI
  166. Kirisits, 2006, Does Pseudomonas aeruginosa use intercellular signalling to build biofilm communities?, Cell. Microbiol., 8, 1841, 10.1111/j.1462-5822.2006.00817.x · DOI
  167. Lewis, 2008, Multidrug tolerance of biofilms and persister cells, Curr. Top. Microbiol. Immunol., 322, 107
  168. Keren, 2004, Persister cells and tolerance to antimicrobials, FEMS Microbiol. Lett., 230, 13, 10.1016/S0378-1097(03)00856-5 · DOI · Paper page
  169. Keren, 2004, Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli, J. Bacteriol., 186, 8172, 10.1128/JB.186.24.8172-8180.2004 · DOI · Paper page
  170. De Groote, 2009, Novel persistence genes in Pseudomonas aeruginosa identified by high-throughput screening, FEMS Microbiol. Lett., 297, 73, 10.1111/j.1574-6968.2009.01657.x · DOI
  171. Pressler, 2011, Chronic Pseudomonas aeruginosa infection definition: EuroCareCF Working Group report, J. Cyst. Fibros., 10, S75, 10.1016/S1569-1993(11)60011-8 · DOI · Paper page
  172. de Jong, 2004, Progressive damage on high resolution computed tomography despite stable lung function in cystic fibrosis, Eur. Respir. J., 23, 93, 10.1183/09031936.03.00006603 · DOI · Paper page
  173. Meyer, 1997, Regional variability of lung inflammation in cystic fibrosis, Am. J. Respir. Crit. Care Med., 156, 1536, 10.1164/ajrccm.156.5.9701098 · DOI
  174. Tiddens, 2002, Detecting early structural lung damage in cystic fibrosis, Pediatr. Pulmonol., 34, 228, 10.1002/ppul.10134 · DOI · Paper page
  175. Worlitzsch, 2002, Effects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patients, J. Clin. Invest., 109, 317, 10.1172/JCI0213870 · DOI · Paper page
  176. Doggett, 1971, Mucoid Pseudomonas aeruginosa in patients with chronic illnesses, Lancet, 1, 236, 10.1016/S0140-6736(71)90973-1 · DOI
  177. Hoiby, 1974, Pseudomonas aeruginosa infection in cystic fibrosis. Relationship between mucoid strains of Pseudomonas aeruginosa and the humoral immune response, Acta. Pathol. Microbiol. Scand. [B] Microbiol. Immunol., 82, 551
  178. Evans, 1973, Production and characterization of the slime polysaccharide of Pseudomonas aeruginosa, J. Bacteriol., 116, 915, 10.1128/JB.116.2.915-924.1973 · DOI · Paper page
  179. Pedersen, 1990, Immunoglobulin A and immunoglobulin G antibody responses to alginates from Pseudomonas aeruginosa in patients with cystic fibrosis, J. Clin. Microbiol., 28, 747, 10.1128/JCM.28.4.747-755.1990 · DOI
  180. Pier, 2001, Role of alginate O acetylation in resistance of mucoid Pseudomonas aeruginosa to opsonic phagocytosis, Infect. Immun., 69, 1895, 10.1128/IAI.69.3.1895-1901.2001 · DOI · Paper page
  181. Simpson, 1988, Alginate inhibition of the uptake of Pseudomonas aeruginosa by macrophages, J. Gen. Microbiol., 134, 29
  182. Mathee, 1999, Mucoid conversion of Pseudomonas aeruginosa by hydrogen peroxide: a mechanism for virulence activation in the cystic fibrosis lung, Microbiology, 145, 1349, 10.1099/13500872-145-6-1349 · DOI · Paper page
  183. Govan, 1978, Mucoid Pseudomonas aeruginosa and cystic fibrosis: resistance of the mucoid form to carbenicillin, flucloxacillin and tobramycin and the isolation of mucoid variants in vitro, J. Antimicrob. Chemother., 4, 233, 10.1093/jac/4.3.233 · DOI · Paper page
  184. Speert, 1990, Conversion of Pseudomonas aeruginosa to the phenotype characteristic of strains from patients with cystic fibrosis, J. Clin. Microbiol., 28, 188, 10.1128/JCM.28.2.188-194.1990 · DOI
  185. Terry, 1991, Environmental conditions which influence mucoid conversion Pseudomonas aeruginosa PAO1, Infect. Immun., 59, 471, 10.1128/IAI.59.2.471-477.1991 · doi:10.1128/iai.59.2.471-477.1991
  186. DeVries, 1994, Mucoid-to-nonmucoid conversion in alginate-producing Pseudomonas aeruginosa often results from spontaneous mutations in algT, encoding a putative alternate sigma factor, and shows evidence for autoregulation, J. Bacteriol., 176, 6677, 10.1128/jb.176.21.6677-6687.1994 · DOI · Paper page
  187. Martin, 1993, Characterization of a locus determining the mucoid status of Pseudomonas aeruginosa: AlgU shows sequence similarities with a Bacillus sigma factor, J. Bacteriol., 175, 1153, 10.1128/jb.175.4.1153-1164.1993 · DOI · Paper page
  188. Martin, 1993, Differentiation of Pseudomonas aeruginosa into the alginate-producing form: inactivation of mucB causes conversion to mucoidy, Mol. Microbiol., 9, 497, 10.1111/j.1365-2958.1993.tb01711.x · DOI
  189. Mathee, 1997, Posttranslational control of the algT (algU)-encoded sigma22 for expression of the alginate regulon in Pseudomonas aeruginosa and localization of its antagonist proteins MucA and MucB (AlgN), J. Bacteriol., 179, 3711, 10.1128/jb.179.11.3711-3720.1997 · DOI · Paper page
  190. Mathee, 2002, Molecular Ecology of Biofilms, 23
  191. Goldberg, 1993, A mutation in algN permits trans activation of alginate production by algT in Pseudomonas species, J. Bacteriol., 175, 1303, 10.1128/jb.175.5.1303-1308.1993 · DOI
  192. Martin, 1993, Mechanism of conversion to mucoidy in Pseudomonas aeruginosa infecting cystic fibrosis patients, Proc. Natl Acad. Sci. USA, 90, 8377, 10.1073/pnas.90.18.8377 · DOI · Paper page
  193. Ohman, 2009, Alginates: Biology and Applications, 117, 10.1007/978-3-540-92679-5_5 · DOI
  194. Damron, 2012, Proteolytic regulation of alginate overproduction in Pseudomonas aeruginosa, Mol. Microbiol., 84, 595, 10.1111/j.1365-2958.2012.08049.x · DOI
  195. Damron, 2011, Pseudomonas aeruginosa MucD regulates the alginate pathway through activation of MucA degradation via MucP proteolytic activity, J. Bacteriol., 193, 286, 10.1128/JB.01132-10 · DOI
  196. Martin, 1994, Analysis of promoters controlled by the putative sigma factor AlgU regulating conversion to mucoidy in Pseudomonas aeruginosa: relationship to sigma E and stress response, J. Bacteriol., 176, 6688, 10.1128/jb.176.21.6688-6696.1994 · DOI · Paper page
  197. Wozniak, 1994, Transcriptional analysis of the Pseudomonas aeruginosa genes algR, algB, and algD reveals a hierarchy of alginate gene expression which is modulated by algT, J. Bacteriol., 176, 6007, 10.1128/jb.176.19.6007-6014.1994 · DOI · Paper page
  198. Wozniak, 2003, Control of Pseudomonas aeruginosa algZ expression by the alternative sigma factor AlgT, J. Bacteriol., 185, 7297, 10.1128/JB.185.24.7297-7300.2003 · DOI
  199. Chitnis, 1993, Genetic analysis of the alginate biosynthetic gene cluster of Pseudomonas aeruginosa shows evidence of an operonic structure, Mol. Microbiol., 8, 583, 10.1111/j.1365-2958.1993.tb01602.x · DOI · Paper page
  200. Deretic, 1987, Gene algD coding for GDPmannose dehydrogenase is transcriptionally activated in mucoid Pseudomonas aeruginosa, J. Bacteriol., 169, 351, 10.1128/jb.169.1.351-358.1987 · doi:10.1128/jb.169.1.351-358.1987

200 of 324 shown

Cited by

See all 591

Metadata

Authors
Balasubramanian, D., Schneper, L., Kumari, H., & Mathee, K.
Venue
Nucleic Acids Research
Published
2012-11-10
Volume
41
Issue
1
Pages
1-20
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W1964344318
Cited by
591
References
13
FWCI
9.53
Type
journal article
Language
en
Open access
gold

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

How to cite

Cite CoChat for the checks on this page, and the paper for its own findings.

This page
CoChat. (2026). Citation check: A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence. https://app.cochat.ai/papers/10.1093/nar/gks1039
The paper
Balasubramanian, D., Schneper, L., Kumari, H., & Mathee, K. (2013). A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence. Nucleic Acids Research. https://doi.org/10.1093/nar/gks1039

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.