The Gut Microbiome and Individual-Specific Responses to Diet

An obesity-associated gut microbiome with increased capacity for energy harvest

Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006) · Nature · doi:10.1038/nature05414 · Cited by 12,444 · see citing works

Diet rapidly and reproducibly alters the human gut microbiome

David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., Ling, A. V., Devlin, A. S., Varma, Y., Fischbach, M. A., et al. (2014) · Nature · doi:10.1038/nature12820 · Cited by 10,100 · see citing works

Metabolic Endotoxemia Initiates Obesity and Insulin Resistance

Cani, P. D., Amar, J., Iglesias, M. A., Poggi, M., Knauf, C., Bastelica, D., Neyrinck, A. M., Fava, F., Tuohy, K. M., Chabo, C., et al. (2007) · Diabetes · doi:10.2337/db06-1491 · Cited by 6,638 · see citing works

Linking long-term dietary patterns with gut microbial enterotypes

Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., Bewtra, M., Knights, D., Walters, W. A., Knight, R., et al. (2011) · Science · doi:10.1126/science.1208344 · Cited by 6,513 · see citing works

The gut microbiota as an environmental factor that regulates fat storage

Bäckhed, F., Ding, H., Wang, T., Hooper, L. V., Koh, G. Y., Nagy, A., Semenkovich, C. F., & Gordon, J. I. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0407076101 · Cited by 6,245 · see citing works

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

De Filippo, C., Cavalieri, D., Di Paola, M., Ramazzotti, M., Poullet, J. B., Massart, S., Collini, S., Pieraccini, G., & Lionetti, P. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1005963107 · Cited by 5,579 · see citing works

Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice

Cani, P. D., Bibiloni, R., Knauf, C., Waget, A., Neyrinck, A. M., Delzenne, N. M., & Burcelin, R. (2008) · Diabetes · doi:10.2337/db07-1403 · Cited by 4,819 · see citing works

Richness of human gut microbiome correlates with metabolic markers

Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J.-M., Kennedy, S., et al. (2013) · Nature · doi:10.1038/nature12506 · Cited by 4,662 · see citing works

Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis

Koeth, R. A., Wang, Z., Levison, B. S., Buffa, J. A., Org, E., Sheehy, B. T., Britt, E. B., Fu, X., Wu, Y., Li, L., et al. (2013) · Nature Medicine · doi:10.1038/nm.3145 · Cited by 4,386 · see citing works

Intestinal microbial metabolism of phosphatidylcholine and cardiovascular risk

Tang, W. H. W., Wang, Z., Levison, B. S., Koeth, R. A., Britt, E. B., Fu, X., Wu, Y., & Hazen, S. L. (2013) · New England Journal of Medicine · doi:10.1056/nejmoa1109400 · Cited by 3,402 · see citing works

Gut metagenome in European women with normal, impaired and diabetic glucose control

Karlsson, F. H., Tremaroli, V., Nookaew, I., Bergström, G., Behre, C. J., Fagerberg, B., Nielsen, J., & Bäckhed, F. (2013) · Nature · doi:10.1038/nature12198 · Cited by 3,115 · see citing works

The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice

Turnbaugh, P. J., Ridaura, V. K., Faith, J. J., Rey, F. E., Knight, R., & Gordon, J. I. (2009) · Science Translational Medicine · doi:10.1126/scitranslmed.3000322 · Cited by 3,058 · see citing works

Personalized nutrition by prediction of glycemic responses

Zeevi, D., Korem, T., Zmora, N., Israeli, D., Rothschild, D., Weinberger, A., Ben-Yacov, O., Lador, D., Avnit-Sagi, T., Lotan-Pompan, M., et al. (2015) · Cell · doi:10.1016/j.cell.2015.11.001 · Cited by 2,929 · see citing works

Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome

Turnbaugh, P. J., Bäckhed, F., Fulton, L., & Gordon, J. I. (2008) · Cell Host & Microbe · doi:10.1016/j.chom.2008.02.015 · Cited by 2,915 · see citing works

Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome

Vrieze, A., Van Nood, E., Holleman, F., Salojärvi, J., Kootte, R. S., Bartelsman, J. F. W. M., Dallinga–Thie, G. M., Ackermans, M. T., Serlie, M. J., Oozeer, R., et al. (2012) · Gastroenterology · doi:10.1053/j.gastro.2012.06.031 · Cited by 2,913 · see citing works

Intestinal Crosstalk between Bile Acids and Microbiota and Its Impact on Host Metabolism

Wahlstrom, A. M., Sayin, S. I., Marschall, H., & Bäckhed, F. (2016) · Cell Metabolism · doi:10.1016/j.cmet.2016.05.005 · Cited by 2,903 · see citing works

Environment dominates over host genetics in shaping human gut microbiota

Rothschild, D., Weissbrod, O., Barkan, E., Kurilshikov, A., Korem, T., Zeevi, D., Costea, P. I., Godneva, A., Kalka, I. N., Bar, N., et al. (2018) · Nature · doi:10.1038/nature25973 · Cited by 2,859 · see citing works

A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility

Desai, M. S., Seekatz, A. M., Koropatkin, N. M., Kamada, N., Hickey, C. A., Wolter, M., Pudlo, N. A., Kitamoto, S., Terrapon, N., Muller, A., et al. (2016) · Cell · doi:10.1016/j.cell.2016.10.043 · Cited by 2,805 · see citing works

Mechanisms underlying the resistance to diet-induced obesity in germ-free mice

Bäckhed, F., Manchester, J. K., Semenkovich, C. F., & Gordon, J. I. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605374104 · Cited by 2,615 · see citing works

Gut biogeography of the bacterial microbiota

Donaldson, G. P., Lee, S. M., & Mazmanian, S. K. (2016) · Nature Reviews Microbiology · doi:10.1038/nrmicro3552 · Cited by 2,535 · see citing works

The impact of dietary fiber on gut microbiota in host health and disease

Makki, K., Deehan, E. C., Walter, J., & Bäckhed, F. (2018) · Cell Host & Microbe · doi:10.1016/j.chom.2018.05.012 · Cited by 2,517 · see citing works

Gut bacteria selectively promoted by dietary fibers alleviate type 2 diabetes

Zhao, L., Zhang, F., Ding, X., Wu, G., Lam, Y. Y., Wang, X., Fu, H., Xue, X., Lu, C., Ma, J., et al. (2018) · Science · doi:10.1126/science.aao5774 · Cited by 2,304 · see citing works

A purified membrane protein from Akkermansia muciniphila or the pasteurized bacterium improves metabolism in obese and diabetic mice

Plovier, H., Everard, A., Druart, C., Depommier, C., Van Hul, M., Geurts, L., Chilloux, J., Ottman, N., Duparc, T., Lichtenstein, L., et al. (2017) · Nature Medicine · doi:10.1038/nm.4236 · Cited by 2,204 · see citing works

Human gut microbes impact host serum metabolome and insulin sensitivity

Pedersen, H. K., Gudmundsdottir, V., Nielsen, H. B., Hyotylainen, T., Nielsen, T., Jensen, B. A. H., Forslund, K., Hildebrand, F., Prifti, E., Falony, G., et al. (2016) · Nature · doi:10.1038/nature18646 · Cited by 2,116 · see citing works

Artificial sweeteners induce glucose intolerance by altering the gut microbiota

Suez, J., Korem, T., Zeevi, D., Zilberman-Schapira, G., Thaiss, C. A., Maza, O., Israeli, D., Zmora, N., Gilad, S., Weinberger, A., et al. (2014) · Nature · doi:10.1038/nature13793 · Cited by 2,067 · cited 4× · see citing works

Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

Chassaing, B., Koren, O., Goodrich, J. K., Poole, A. C., Srinivasan, S., Ley, R. E., & Gewirtz, A. T. (2015) · Nature · doi:10.1038/nature14232 · Cited by 2,055 · see citing works

Ultra-Processed Diets Cause Excess Calorie Intake and Weight Gain: An Inpatient Randomized Controlled Trial of Ad Libitum Food Intake

Hall, K. D., Ayuketah, A., Brychta, R., Cai, H., Cassimatis, T., Chen, K. Y., Chung, S. T., Costa, E., Courville, A., Darcey, V., et al. (2019) · Cell Metabolism · doi:10.1016/j.cmet.2019.05.008 · Cited by 1,971 · see citing works

Gut Microbial Metabolite TMAO Enhances Platelet Hyperreactivity and Thrombosis Risk

Zhu, W., Gregory, J. C., Org, E., Buffa, J. A., Gupta, N., Wang, Z., Li, L., Fu, X., Wu, Y., Mehrabian, M., et al. (2016) · Cell · doi:10.1016/j.cell.2016.02.011 · Cited by 1,968 · see citing works

<i>Akkermansia muciniphila</i> and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology

Dao, M. C., Everard, A., Aron-Wisnewsky, J., Sokolovska, N., Prifti, E., Verger, E. O., Kayser, B. D., Levenez, F., Chilloux, J., Hoyles, L., et al. (2016) · Gut · doi:10.1136/gutjnl-2014-308778 · Cited by 1,931 · see citing works

Extensive impact of non-antibiotic drugs on human gut bacteria

Maier, L., Pruteanu, M., Kuhn, M., Zeller, G., Telzerow, A., Anderson, E. E., Brochado, A. R., Fernandez, K. C., Dose, H., Mori, H., et al. (2018) · Nature · doi:10.1038/nature25979 · Cited by 1,905 · see citing works

Dietary intervention impact on gut microbial gene richness

Cotillard, A., Kennedy, S. P., Kong, L. C., Prifti, E., Pons, N., Le Chatelier, E., Almeida, M., Quinquis, B., Levenez, F., Galleron, N., et al. (2013) · Nature · doi:10.1038/nature12480 · Cited by 1,832 · see citing works

Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abundance of Prevotella

Kovatcheva-Datchary, P., Nilsson, A., Akrami, R., Lee, Y. S., De Vadder, F., Arora, T., Hallen, A., Martens, E., Björck, I., & Bäckhed, F. (2015) · Cell Metabolism · doi:10.1016/j.cmet.2015.10.001 · Cited by 1,731 · see citing works

Diet-induced extinctions in the gut microbiota compound over generations

Sonnenburg, E. D., Smits, S. A., Tikhonov, M., Higginbottom, S. K., Wingreen, N. S., & Sonnenburg, J. L. (2016) · Nature · doi:10.1038/nature16504 · Cited by 1,730 · see citing works

Crosstalk between microbiota-derived short-chain fatty acids and intestinal epithelial HIF augments tissue barrier function

Kelly, C. J., Zheng, L., Campbell, E. L., Saeedi, B., Scholz, C. C., Bayless, A. J., Wilson, K. E., Glover, L. E., Kominsky, D. J., Magnuson, A., et al. (2015) · Cell Host &amp; Microbe · doi:10.1016/j.chom.2015.03.005 · Cited by 1,716 · see citing works

Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features

Zmora, N., Zilberman-Schapira, G., Suez, J., Mor, U., Dori-Bachash, M., Bashiardes, S., Kotler, E., Zur, M., Regev-Lehavi, D., Brik, R. B.-Z., et al. (2018) · Cell · doi:10.1016/j.cell.2018.08.041 · Cited by 1,695 · see citing works

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

Walker, A. W., Ince, J., Duncan, S. H., Webster, L. M., Holtrop, G., Ze, X., Brown, D., Stares, M. D., Scott, P., Bergerat, A., et al. (2011) · The ISME Journal · doi:10.1038/ismej.2010.118 · Cited by 1,632 · see citing works

Antibiotics in early life alter the murine colonic microbiome and adiposity

Cho, I., Yamanishi, S., Cox, L., Methé, B. A., Zavadil, J., Li, K., Gao, Z., Mahana, D., Raju, K., Teitler, I., et al. (2012) · Nature · doi:10.1038/nature11400 · Cited by 1,613 · see citing works

High-Fat Diet Determines the Composition of the Murine Gut Microbiome Independently of Obesity

Hildebrandt, M. A., Hoffmann, C., Sherrill–Mix, S. A., Keilbaugh, S. A., Hamady, M., Chen, Y., Knight, R., Ahima, R. S., Bushman, F., & Wu, G. D. (2009) · Gastroenterology · doi:10.1053/j.gastro.2009.08.042 · Cited by 1,576 · see citing works

Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis

Thaiss, C. A., Zeevi, D., Levy, M., Zilberman-Schapira, G., Suez, J., Tengeler, A. C., Abramson, L., Katz, M. N., Korem, T., Zmora, N., et al. (2014) · Cell · doi:10.1016/j.cell.2014.09.048 · Cited by 1,449 · see citing works

Intestinal Goblet Cells and Mucins in Health and Disease: Recent Insights and Progress

Kim, Y. S., & Ho, S. B. (2010) · Current Gastroenterology Reports · doi:10.1007/s11894-010-0131-2 · Cited by 1,437 · see citing works

How glycan metabolism shapes the human gut microbiota

Koropatkin, N. M., Cameron, E. A., & Martens, E. C. (2012) · Nature Reviews Microbiology · doi:10.1038/nrmicro2746 · Cited by 1,419 · see citing works

Signals from the gut microbiota to distant organs in physiology and disease

Schroeder, B. O., & Bäckhed, F. (2016) · Nature Medicine · doi:10.1038/nm.4185 · Cited by 1,409 · see citing works

Gut microbiome of the Hadza hunter-gatherers

Schnorr, S. L., Candela, M., Rampelli, S., Centanni, M., Consolandi, C., Basaglia, G., Turroni, S., Biagi, E., Peano, C., Severgnini, M., et al. (2014) · Nature Communications · doi:10.1038/ncomms4654 · Cited by 1,317 · see citing works

Non-lethal Inhibition of Gut Microbial Trimethylamine Production for the Treatment of Atherosclerosis

Wang, Z., Roberts, A. B., Buffa, J. A., Levison, B. S., Zhu, W., Org, E., Gu, X., Huang, Y., Zamanian-Daryoush, M., Culley, M. K., et al. (2015) · Cell · doi:10.1016/j.cell.2015.11.055 · Cited by 1,317 · see citing works

Glycan foraging in vivo by an intestine-adapted bacterial symbiont

Sonnenburg, J. L., Xu, J., Leip, D. D., Chen, C.-H., Westover, B. P., Weatherford, J., Buhler, J. D., & Gordon, J. I. (2005) · Science · doi:10.1126/science.1109051 · Cited by 1,184 · see citing works

High Fat Diet-Induced Gut Microbiota Exacerbates Inflammation and Obesity in Mice via the TLR4 Signaling Pathway

Kim, K., Gu, W., Lee, I., Joh, E., & Kim, D. (2012) · PLoS ONE · doi:10.1371/journal.pone.0047713 · Cited by 1,184 · see citing works

The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet

Olson, C. A., Vuong, H. E., Yano, J. M., Liang, Q. Y., Nusbaum, D. J., & Hsiao, E. Y. (2018) · Cell · doi:10.1016/j.cell.2018.04.027 · Cited by 1,057 · see citing works

Improvement of insulin sensitivity after lean donor feces in metabolic syndrome is driven by baseline intestinal microbiota composition

Kootte, R. S., Levin, E., Salojärvi, J., Smits, L. P., Hartstra, A. V., Udayappan, S. D., Hermes, G., Bouter, K. E., Koopen, A. M., Holst, J. J., et al. (2017) · Cell Metabolism · doi:10.1016/j.cmet.2017.09.008 · Cited by 1,039 · see citing works

Links between diet, gut microbiota composition and gut metabolism

Flint, H. J., Duncan, S. H., Scott, K. P., & Louis, P. (2015) · Proceedings of the Nutrition Society · doi:10.1017/s0029665114001463 · Cited by 1,020 · see citing works

Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling

Caesar, R., Tremaroli, V., Kovatcheva-Datchary, P., Cani, P. D., & Bäckhed, F. (2015) · Cell Metabolism · doi:10.1016/j.cmet.2015.07.026 · Cited by 960 · cited 1× · see citing works

Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces

Duncan, S. H., Belenguer, A., Holtrop, G., Johnstone, A. M., Flint, H. J., & Lobley, G. E. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.02340-06 · Cited by 941 · see citing works

Human postprandial responses to food and potential for precision nutrition

Berry, S. E., Valdes, A. M., Drew, D. A., Asnicar, F., Mazidi, M., Wolf, J., Capdevila, J., Hadjigeorgiou, G., Davies, R., Al Khatib, H., et al. (2020) · Nature Medicine · doi:10.1038/s41591-020-0934-0 · Cited by 932 · see citing works

Diet and feeding pattern affect the diurnal dynamics of the gut microbiome

Zarrinpar, A., Chaix, A., Yooseph, S., & Panda, S. (2014) · Cell Metabolism · doi:10.1016/j.cmet.2014.11.008 · Cited by 926 · see citing works

Effects of Diurnal Variation of Gut Microbes and High-Fat Feeding on Host Circadian Clock Function and Metabolism

Leone, V., Gibbons, S. M., Martinez, K., Hutchison, A. L., Huang, E. Y., Cham, C. M., Pierre, J. F., Heneghan, A. F., Nadimpalli, A., Hubert, N., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.03.006 · Cited by 908 · see citing works

Regional variation limits applications of healthy gut microbiome reference ranges and disease models

He, Y., Wu, W., Zheng, H.-M., Li, P., McDonald, D., Sheng, H.-F., Chen, M.-X., Chen, Z.-H., Ji, G.-Y., Zheng, Z.-D.-X., et al. (2018) · Nature Medicine · doi:10.1038/s41591-018-0164-x · Cited by 894 · see citing works

The short chain fatty acid propionate stimulates GLP-1 and PYY secretion via free fatty acid receptor 2 in rodents

Psichas, A., Sleeth, M. L., Murphy, K. G., Brooks, L., Bewick, G. A., Hanyaloglu, A. C., Ghatei, M. A., Bloom, S. R., & Frost, G. (2015) · International Journal of Obesity · doi:10.1038/ijo.2014.153 · Cited by 886 · see citing works

Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania

Smits, S. A., Leach, J., Sonnenburg, E. D., Gonzalez, C. G., Lichtman, J. S., Reid, G., Knight, R., Manjurano, A., Changalucha, J., Elias, J. E., et al. (2017) · Science · doi:10.1126/science.aan4834 · Cited by 886 · see citing works

Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations

Thaiss, C. A., Levy, M., Korem, T., Dohnalová, L., Shapiro, H., Jaitin, D. A., David, E., Winter, D. R., Gury-BenAri, M., Tatirovsky, E., et al. (2016) · Cell · doi:10.1016/j.cell.2016.11.003 · Cited by 870 · see citing works

Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants.

Shabat, S. K. B., Sasson, G., Doron-Faigenboim, A., Durman, T., Yaacoby, S., Berg Miller, M. E., White, B. A., Shterzer, N., & Mizrahi, I. (2016) · The ISME Journal · doi:10.1038/ismej.2016.62 · Cited by 823 · see citing works

Exogenous Stimuli Maintain Intraepithelial Lymphocytes via Aryl Hydrocarbon Receptor Activation

Li, Y., Innocentin, S., Withers, D. R., Roberts, N. A., Gallagher, A., Grigorieva, E. F., Wilhelm, C., & Veldhoen, M. (2011) · Cell · doi:10.1016/j.cell.2011.09.025 · Cited by 816 · see citing works

Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers

Schmidt, T. M., Baxter, N. T., Waldron, C., Alexander, S. W., Venkataraman, A., & Kim, K. (2019) · mBio · doi:10.1128/mbio.02566-18 · Cited by 773 · see citing works

Daily sampling reveals personalized diet-microbiome associations in humans

Johnson, A. J., Vangay, P., Al-Ghalith, G. A., Hillmann, B. M., Ward, T. L., Shields-Cutler, R. R., Kim, A. D., Shmagel, A. K., Syed, A. N., Walter, J., et al. (2019) · Cell Host &amp; Microbe · doi:10.1016/j.chom.2019.05.005 · Cited by 742 · see citing works

The Performance and Usability of a Factory-Calibrated Flash Glucose Monitoring System

Bailey, T., Bode, B. W., Christiansen, M. P., Klaff, L. J., & Alva, S. (2015) · Diabetes Technology &amp; Therapeutics · doi:10.1089/dia.2014.0378 · Cited by 685 · see citing works

Diets that differ in their FODMAP content alter the colonic luminal microenvironment

Halmos, E. P., Christophersen, C. T., Bird, A. R., Shepherd, S. J., Gibson, P. R., & Muir, J. G. (2015) · Gut · doi:10.1136/gutjnl-2014-307264 · Cited by 681 · see citing works

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

Salonen, A., Lahti, L., Salojärvi, J., Holtrop, G., Korpela, K., Duncan, S. H., Date, P., Farquharson, F., Johnstone, A. M., Lobley, G. E., et al. (2014) · The ISME Journal · doi:10.1038/ismej.2014.63 · Cited by 626 · see citing works

Gut microbiome composition is linked to whole grain-induced immunological improvements

Martínez, I., Lattimer, J. M., Hubach, K. L., Case, J. A., Yang, J., Weber, C. G., Louk, J. A., Rose, D. J., Kyureghian, G., Peterson, D. A., et al. (2013) · The ISME Journal · doi:10.1038/ismej.2012.104 · Cited by 614 · see citing works

Germ-free C57BL/6J mice are resistant to high-fat-diet-induced insulin resistance and have altered cholesterol metabolism

Rabot, S., Membrez, M., Bruneau, A., Gérard, P., Harach, T., Moser, M., Raymond, F., Mansourian, R., & Chou, C. J. (2010) · The FASEB Journal · doi:10.1096/fj.10-164921 · Cited by 610 · cited 1× · see citing works

Germ‐free C57BL/6J mice are resistant to high‐fat‐diet‐induced insulin resistance and have altered cholesterol metabolism

Rabot, S., Membrez, M., Bruneau, A., Gérard, P., Harach, T., Moser, M., Raymond, F., Mansourian, R., & Chou, C. J. (2010) · The FASEB Journal · doi:10.1096/fj.10.164921 · Cited by 610 · see citing works

ANTIBIOTICS AS GROWTH PROMOTANTS:MODE OF ACTION

Gaskins, H. R., Collier, C. T., & Anderson, D. B. (2002) · Animal Biotechnology · doi:10.1081/abio-120005768 · Cited by 607 · see citing works

Effects of dietary fat on gut microbiota and faecal metabolites, and their relationship with cardiometabolic risk factors: a 6-month randomised controlled-feeding trial

Wan, Y., Wang, F., Yuan, J., Li, J., Jiang, D., Zhang, J., Li, H., Wang, R., Tang, J., Huang, T., et al. (2019) · Gut · doi:10.1136/gutjnl-2018-317609 · Cited by 598 · see citing works

Dietary emulsifiers directly alter human microbiota composition and gene expression ex vivo potentiating intestinal inflammation

Chassaing, B., Van de Wiele, T., De Bodt, J., Marzorati, M., & Gewirtz, A. T. (2017) · Gut · doi:10.1136/gutjnl-2016-313099 · Cited by 590 · see citing works

Energy intake is associated with endotoxemia in apparently healthy men

Amar, J., Burcelin, R., Ruidavets, J. B., Cani, P. D., Fauvel, J., Alessi, M., Chamontin, B., & Ferrières, J. (2008) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/87.5.1219 · Cited by 588 · see citing works

Ketogenic Diets Alter the Gut Microbiome Resulting in Decreased Intestinal Th17 Cells

Ang, Q. Y., Alexander, M., Newman, J. C., Tian, Y., Cai, J., Upadhyay, V., Turnbaugh, J. A., Verdin, E. M., Hall, K. D., Leibel, R. L., et al. (2020) · Cell · doi:10.1016/j.cell.2020.04.027 · Cited by 576 · see citing works

Alterations in fecal microbiota composition by probiotic supplementation in healthy adults: a systematic review of randomized controlled trials

Kristensen, N. B., Bryrup, T., Allin, K. H., Nielsen, T., Hansen, T. H., & Pedersen, O. (2016) · Genome Medicine · doi:10.1186/s13073-016-0300-5 · Cited by 561 · see citing works

Homeostasis in intestinal epithelium is orchestrated by the circadian clock and microbiota cues transduced by TLRs

Mukherji, A., Kobiita, A., Ye, T., & Chambon, P. (2013) · Cell · doi:10.1016/j.cell.2013.04.020 · Cited by 560 · see citing works

Precision Microbiome Modulation with Discrete Dietary Fiber Structures Directs Short-Chain Fatty Acid Production

Deehan, E. C., Yang, C., Pérez-Muñoz, M. E., Nguyen, N. K., Cheng, C. C., Triador, L., Zhang, Z., Bakal, J. A., & Walter, J. (2020) · Cell Host & Microbe · doi:10.1016/j.chom.2020.01.006 · Cited by 549 · see citing works

Genetic Control of Obesity and Gut Microbiota Composition in Response to High-Fat, High-Sucrose Diet in Mice

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Antibiotics in early life and obesity

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Dynamic nature of viral and bacterial communities in human faeces

Shkoporov, A. N., O’Regan, O., Smith, L., Khokhlova, E. V., Draper, L. A., Ross, R. P., & Hill, C. (2023) · iScience · doi:10.1016/j.isci.2023.108778 · Cited by 6 · see citing works

New high-specificity fibers with strong and consistent responses across individuals

Costa, M. A. D. C., Zhao, X., Komura, D. L., Carbonero, E. R., Delgado, G. T. C., Tunçil, Y. E., Cipriani, T. R., Román-Ochoa, Y., Hamaker, B. R., & Cantu-Jungles, T. M. (2025) · Food & Function · doi:10.1039/d5fo02728d · Cited by 6 · see citing works

Die Rolle des Darmmikrobioms bei chronischen Krankheiten: Eine narrative Übersichtsarbeit

Vijay, A., & Valdes, A. M. (2022) · Kompass Autoimmun · doi:10.1159/000524069 · Cited by 5 · see citing works

Nourishing the gut: the impact of diet on host–gut microbiota interaction

Masi, D., Roy, T. L., Adriouch, S., & Clément, K. (2024) · Current Opinion in Clinical Nutrition & Metabolic Care · doi:10.1097/mco.0000000000001009 · Cited by 5 · see citing works

The Microbiome: the Link to Colorectal Cancer and Research Opportunities

Cass, S. H., Ajami, N. J., & White, M. G. (2022) · Current Treatment Options in Oncology · doi:10.1007/s11864-022-00960-6 · Cited by 5 · see citing works

Artificial Intelligence based personalized diet: A pilot clinical study for IBSPreprint

Karakan, T., Gündoğdu, A., Alagözlü, H., Ekmen, N., Özgül, S., Hora, M., Beyazgül, D., & Nalbantoğlu, Ö. U. (2021) · medRxiv · doi:10.1101/2021.02.23.21251434 · Cited by 4 · see citing works

Differences in Gut Microbes Across Age and Sex Linked to Metabolism and Microbial Stability in a Hibernating Mammal

Pfau, M., Degregori, S., Barber, P. H., Blumstein, D. T., & Philson, C. S. (2024) · Ecology and Evolution · doi:10.1002/ece3.70519 · Cited by 4 · see citing works

Prebiotic potential of proso millet and quinoa: Effects on gut microbiota composition and functional metabolic pathways

Kim, J., Kim, J., Jung, Y., Kim, G., Kim, S., & Shin, H. (2025) · The Journal of Microbiology · doi:10.71150/jm.2503002 · Cited by 3 · see citing works

Global bibliometric analysis of traditional Chinese medicine regulating gut microbiota in the treatment of diabetes from 2004 to 2024

Liang, J., Lin, X., Liao, X., Chen, X., Zhou, Y. Q., Zhang, L., Qin, Y., Meng, H., & Feng, Z. (2025) · Frontiers in Pharmacology · doi:10.3389/fphar.2025.1533984 · Cited by 3 · see citing works

Dynamic Microbiome Responses to Structurally Diverse Anthocyanin-Rich Foods in a Western Diet Context

Almatani, M. F., Rompato, G., Stewart, E. C., Hayden, M., Case, J., Rice, S., Hintze, K. J., & Benninghoff, A. D. (2025) · Nutrients · doi:10.3390/nu17132201 · Cited by 3 · see citing works

FiberGrowth Pipeline: A Framework Toward Predicting Fiber-Specific Growth From Human Gut Bacteroidetes Genomes

Colnet, B., Sieber, C. M. K., Perraudeau, F., & Leclerc, M. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.632567 · Cited by 4 · see citing works

Phronetic Risk in Research Agenda Setting – the Case of Nutrition Science and Public Health

Jukola, S. (2024) · Social Epistemology · doi:10.1080/02691728.2024.2435266 · Cited by 3 · see citing works

A Scoping Review of Glucose Spikes in People Without Diabetes: Comparing Insights from Grey Literature and Medical Research

Avner, S., & Robbins, T. (2025) · Clinical Medicine Insights Endocrinology and Diabetes · doi:10.1177/11795514251381409 · Cited by 3 · see citing works

Modulatory effects of Boletus edulis on the gut microbiota in Atlantic salmon (Salmo salar) utilizing an artificial teleost gut model

Barcan, A. S., Humble, J. L., Barcan, R. A., Hughes, E., Robertson, B., Morrison, D. J., Vamanu, E., McGinnity, P., & Llewellyn, M. S. (2025) · Animal Microbiome · doi:10.1186/s42523-025-00469-x · Cited by 2 · see citing works

Future of Food Computing: Deepening the Scope by Broadening the Network

Kāle, M., & Jain, R. (2023) · Digital Humanities in the Nordic and Baltic Countries Publications · doi:10.5617/dhnbpub.10652 · Cited by 2 · see citing works

The Microbiome, Metabolism, and Networks in Precision Nutrition

Mensah, G. E., Maseng, M. G., Allard, S., & Gilbert, J. A. (2024) · Precision Nutrition · doi:10.1016/b978-0-443-15315-0.00011-0 · Cited by 2 · see citing works

Temple stay diet and its impact on gut microbiome and irritable bowel syndrome: a prospective cohort study

Kim, S. H., Kang, W., Kim, M., Hong, S., Kim, H., & Lee, J. K. (2025) · Food & Function · doi:10.1039/d4fo06143h · Cited by 2 · see citing works

A gut microbiome tactile teaching tool and guided-inquiry activity promotes student learning

Shoaf, P. T., French, K. S., Clifford, N. J., McKenney, E. A., & Ott, L. E. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.966289 · Cited by 5 · see citing works

Gut Microbiome and Diet

Navarro‐Tapia, E., Chenoll, E., Rueda, J. M. W., & Ramón, D. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-819265-8.00105-4 · Cited by 1 · see citing works

EVOLVING TRENDS AND EMERGING THEMES IN GUT MICROBIOTA RESEARCH: A COMPREHENSIVE BIBLIOMETRIC ANALYSIS (2015-2024)

Ogasawara, N. (2025) · Arquivos de Gastroenterologia · doi:10.1590/s0004-2803.24612025-023 · Cited by 3 · see citing works

Protocol of a Series of N-of-1 trials for Exploring Personalized Blood Glucose Responses to Different Staple Foods in Patients with Diabetes

Wang, Y., Chen, Y., Li, C., Duan, J., Guo, Y., Zhu, S., Li, B.-M., Ma, D., & Zhu, J. (2025) · Current Developments in Nutrition · doi:10.1016/j.cdnut.2025.107575 · Cited by 1 · see citing works

Artificial intelligence algorithms of patients with irritable Bowel syndrome

Haripriyaa, M., Suthindhiran, K., & Jayasri, M. A. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-22348-8.00010-6 · Cited by 1 · see citing works

Associations between Dietary Intakes and the Gut Microbiome in Children with Solid Tumors after Chemotherapy and Healthy ControlsPreprint

Zhou, S., Martin, M., Powell, C., Sutton, K. S., George, B. A., Olson, T. A., Konstantinidis, K. T., Bruner, D. W., & Bai, J. (2021) · doi:10.22541/au.162526069.90949263/v1 · Cited by 1 · see citing works

The Gut Microbiome

Neuman, H., Turjeman, S. C., & Koren, O. (2022) · Elsevier eBooks · doi:10.1016/b978-0-12-821618-7.00040-7 · Cited by 1 · see citing works

The zebrafish gut microbiome influences benzo[a]pyrene developmental neurotoxicityPreprint

Stagaman, K., Alexiev, A., Sieler, M. J., Hammer, A. J., Kasschau, K. D., Truong, L., Tanguay, R. L., & Sharpton, T. J. (2024) · Research Square · doi:10.21203/rs.3.rs-3944268/v1 · Cited by 1 · see citing works

A high-carbohydrate diet prolongs dysbiosis and Clostridioides difficile carriage and increases late-onset CDI and mortality in a hamster model of infectionPreprint

Bhute, S. S., Mefferd, C. C., Phan, J. R., Ahmed, M., Fox-King, A. E., Alarcia, S., Villarama, J. V., Abel‐Santos, E., & Hedlund, B. P. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.10.04.463142

Precision Nutrition and Cognitive Decline

Borut, P., Zalar, B., & Peterlin, A. (2022) · Springer eBooks · doi:10.1007/978-3-031-10153-3_8

Defining the environmental determinants of dysbiosis at scale with zebrafish

Sharpton, T. J., Alexiev, A., & Tanguay, R. L. (2023) · Current Opinion in Toxicology · doi:10.1016/j.cotox.2023.100430

Microbiome: Human Nutrition and Psychology

Tewari, S., Sarkar, L., Pramanik, P., Mukherjee, P., Pattanayak, A., & Mahreen, K. F. (2023) · International Journal of Indian Psychology · doi:10.25215/1103.110

The Role of Fermented Pickles in Shaping Gut Microbiota and Immune Response in Women: A Community-Based Trial in PakistanPreprint

Hafeez, S. H., Khalid, A., Ahmed, S., Umrani, F. A., Qureshi, A. K., Ahmed, K., Shaheen, F., Hotwani, A., Kabir, F., Moore, S. R., et al. (2025) · medRxiv · doi:10.1101/2025.01.10.25320071

Food as Medicine in Nutrition and Microbiology Perspectives

Kumara, U. I. H., Fernando, W. C. R. S., & Selvarajh, G. (2025) · IGI Global eBooks · doi:10.4018/979-8-3373-1439-6.ch009

Fermented pickles improve gut microbiota and immune profile in women in a community trial in rural Pakistan

Hafeez, S. H., Khalid, A., Ahmed, S., Umrani, F. A., Qureshi, A. K., Ahmed, K., Shaheen, F., Hotwani, A., Kabir, F., Moore, S. R., et al. (2025) · Scientific Reports · doi:10.1038/s41598-025-17721-8

A Knowledge Graph-Driven Framework Integrating GNN and Reinforcement Learning for Personalized Nutrition Recommendations Based on Gut Microbiome Analysis

Thoniyot, S., & Balakrishnan, V. (2026) · Lecture notes in networks and systems · doi:10.1007/978-981-95-0375-9_18

16S rRNA–Based Identification and Probiotic Potential of Lactobacilli Isolated from Asymptomatic COVID-19 Individuals

Shah, J., & Shrivastava, P. (2026) · EPJ Web of Conferences · doi:10.1051/epjconf/202634801003

Diet-Microbiota Interactions in Metabolic Health: A Review of Personalized Nutritional Strategies for Gut Dysbiosis

Judijanto, L. (2026) · European Journal of Medical and Health Research · doi:10.59324/ejmhr.2026.4(1).32

Diverse High-Fat Diets Drive Multi-Omic Reprogramming that Persists after Dietary ReversalPreprint

Camp, A. G. V., Park, J., Ozcelik, E., Eskiocak, O., Ozler, K., Papciak, K., Subhash, S., Alwaseem, H., Ergin, I., Chung, C., et al. (2026) · SSRN Electronic Journal · doi:10.2139/ssrn.6690547

Multilevel functional distributional models with applications to continuous glucose monitoring in diabetes clinical trials

Matabuena, M., & Crainiceanu, C. M. (2026) · The Annals of Applied Statistics · doi:10.1214/26-aoas2139

Precision nutrition in breast cancer: Towards patient- and tumour-informed dietary strategies

Crespo-Garcia, C., Taaffe, D. R., Peddle‐McIntyre, C. J., Jeffery, E., Campbell, J. P., Thomas, R., Galvao, D. A., & Newton, R. U. (2026) · Clinical Nutrition · doi:10.1016/j.clnu.2026.106670

Role of AI in advanced application of emerging food technologies

Chandra, A., Srinivas, C. J., & Kardile, N. B. (2026) · Elsevier eBooks · doi:10.1016/b978-0-443-40501-3.00004-2

The role of the gut microbiome in predicting response to diet and the development of precision nutrition models. Part II: results

Hughes, R. L., Kable, M. E., Marco, M., & Keim, N. L. (2019) · Advances in Nutrition · doi:10.1093/advances/nmz049 · Cited by 117 · see citing works

The Role of the Gut Microbiome in Predicting Response to Diet and the Development of Precision Nutrition Models—Part I: Overview of Current Methods

Hughes, R., Marco, M. L., Hughes, J. P., Keim, N. L., & Kable, M. E. (2019) · Advances in Nutrition · doi:10.1093/advances/nmz022 · Cited by 95 · see citing works

Gut microbiome and its potential link to personalized nutrition

Kviatcovsky, D., Zheng, D., & Elinav, E. (2021) · Current Opinion in Physiology · doi:10.1016/j.cophys.2021.05.002 · Cited by 26 · see citing works

The Present and Future of Personalized Nutrition

Torres, N., & Tovar, A. R. (2021) · Revista de investigaci�n Cl�nica · doi:10.24875/ric.21000346 · Cited by 16 · see citing works

Personalized Diets based on the Gut Microbiome as a Target for Health Maintenance: from Current Evidence to Future Possibilities

Song, E., & Shin, J. (2022) · Journal of Microbiology and Biotechnology · doi:10.4014/jmb.2209.09050 · Cited by 61 · see citing works