Delineation of multiple subpallial progenitor domains by the combinatorial expression of transcriptional codes
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The mammalian telencephalon is considered the most complex of all biological structures. It comprises a large number of functionally and morphologically distinct types of neurons that coordinately control most aspects of cognition and behavior. The subpallium, for example, not only gives rise to multiple neuronal types that form the basal ganglia and parts of the amygdala and septum but also is the origin of an astonishing diversity of cortical interneurons. Despite our detailed knowledge on the molecular, morphological, and physiological properties of most of these neuronal populations, the mechanisms underlying their generation are still poorly understood. Here, we comprehensively analyzed the expression patterns of several transcription factors in the ventricular zone of the developing subpallium in the mouse to generate a detailed molecular map of the different progenitor domains present in this region. Our study demonstrates that the ventricular zone of the mouse subpallium contains at least 18 domains that are uniquely defined by the combinatorial expression of several transcription factors. Furthermore, the results of microtransplantation experiments in vivo corroborate that anatomically defined regions of the mouse subpallium, such as the medial ganglionic eminence, can be subdivided into functionally distinct domains.
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The Subpallium-GABA neighbourhood (subclasses 39-90, total 1,051 clusters) was divided into 7 classes that are likely related to their distinct developmental origins.
“On the basis of the molecular signature and regional specificity of each subclass, the Subpallium-GABA neighbourhood (subclasses 39–90, total 1,051 clusters) was divided into 7 classes that are likely related to their distinct developmental origins29,30”
From A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain (2023) · cites this paper as [29]
The subpallium of rodents and primates, including humans, can be subdivided into progenitor domains each characterized by a specific combination of transcription factors.
“The subpallium of rodents and primates, including humans, can be subdivided into several progenitor domains each characterized by the expression of a specific combination of transcription factors”
From Development and Functional Diversification of Cortical Interneurons (2018) · cites this paper as Flames et al., 2007
Each progenitor domain in the MGE generates multiple types of cortical interneurons.
“Each progenitor domain in the MGE generates multiple types of cortical interneurons”
From Development and Functional Diversification of Cortical Interneurons (2018) · cites this paper as Flames et al., 2007
The ventricular zone of the MGE, CGE, and preoptic region can be subdivided into multiple progenitor domains uniquely defined by combinatorial transcription factor expression.
“The ventricular zone (VZ) of the MGE, CGE and preoptic region can be subdivided into multiple domains of progenitor cells that are uniquely defined by the combinatorial expression of several transcription factors”
From Development and Functional Diversification of Cortical Interneurons (2018) · cites this paper as Flames et al., 2007
The POH lacks Nkx2-1 expression and exhibits molecular similarities with the CGE.
“The POH, the most caudal progenitor domain in the preoptic region, lacks expression of Nkx2-1 and exhibit molecular similarities with the CGE”
From Development and Functional Diversification of Cortical Interneurons (2018) · cites this paper as Flames et al., 2007
The dorsal MGE has a strong bias toward generating SST+ interneurons, whereas ventrocaudal domains produce a larger fraction of PV+ neurons.
“the dorsal MGE has a strong bias toward the generation of SST+ interneurons, whereas the ventrocaudal domains produce a larger fraction of PV+ neurons”
From Development and Functional Diversification of Cortical Interneurons (2018) · cites this paper as Flames et al., 2007
Diversity is first apparent in the regional expression of a limited number of transcription factors within the ganglionic eminences.
“Diversity is first apparent in the regional expression of a limited number of transcription factors within the ganglionic eminences (GEs)2,3.”
From Developmental diversification of cortical inhibitory interneurons (2018) · cites this paper as [2]
Two subdomains are found in the POA based on nonoverlapping expression profiles for Dbx1 and Nkx5.1.
“Two subdomains are found in the POA based on nonoverlapping expression profiles for Dbx1 and Nkx5.1”
From Hippocampal GABAergic Inhibitory Interneurons (2017) · cites this paper as [335]
Most interneuron precursors emerging from the POA do not rely on downstream activation of Lhx6 to specify PV and SST interneurons.
“most interneuron precursors emerging from the POA do not rely on downstream activation of Lhx6 to specify PV and SST interneurons”
From Hippocampal GABAergic Inhibitory Interneurons (2017) · cites this paper as [335]
The caudal ganglionic eminence contains a molecularly heterogeneous pool of progenitor cells.
“which reinforces the view that this anatomical region contains a molecularly heterogeneous pool of progenitor cells (15).”
From Early emergence of cortical interneuron diversity in the mouse embryo (2018) · cites this paper as [15]
The molecular diversity of ventricular zone cells was more limited than anticipated, while subventricular zone progenitors showed diversity.
“Although the molecular diversity of VZ cells was more limited than anticipated (15, 16), this analysis revealed diversity among SVZ progenitors (Fig. 2B and figs. S11 to S14).”
From Early emergence of cortical interneuron diversity in the mouse embryo (2018) · cites this paper as [15]
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- Authors
- Flames, N., Pla, R., Gelman, D. M., Rubenstein, J. L. R., Puelles, L., & Marín, O.
- Affiliations
- Consejo Superior de Investigaciones Científicas (ES)
- University of California, San Francisco (US)
- Instituto de Salud Carlos III (ES)
- Venue
- The Journal of Neuroscience
- Publisher
- Society for Neuroscience
- Published
- 2007-09-05
- Volume
- 27
- Issue
- 36
- Pages
- 9682-9695
- ISSN
- 0270-6474 (ISSN-L)
- 1529-2401
- PMC
- PMC4916652
- OpenAlex
- W2094703740
- Cited by
- 560
- References
- 61
- Citations by year
- 2026: 8 · 2025: 19 · 2024: 19 · 2023: 23 · 2022: 23 · 2021: 32 · 2020: 30 · 2019: 19 · 2018: 30 · 2017: 33 · 2016: 28 · 2015: 40 · 2014: 38 · 2013: 39 · 2012: 32
- FWCI
- 10.05
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of Neuroscience (publishedVersion, cc-by-nc-sa)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- DIGITAL.CSIC (Spanish National Research Council (CSIC)) (submittedVersion)
- Funders
- European Commission (005139)
- National Institute of Mental Health (R01MH49428, K05MH065670, R01MH049428)
- Topics
- Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Congenital heart defects research
- Keywords
- subpallium, transcription factors, combinatorial gene expression, ventricular zone, medial ganglionic eminence, basal ganglia, amygdala, septum, cortical interneurons, microtransplantation, mouse brain development, telencephalon
- MeSH terms
- Animals, Cerebral Ventricles, Mice, Transgenic, Stem Cells, Telencephalon, Transcription Factors, Brain Tissue Transplantation, Genes, Reporter, Gene Expression Regulation, Developmental, Embryonic Development, Green Fluorescent Proteins, Mice
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