Ancient Biomolecules and Evolutionary Inference

Inference of Population Structure Using Multilocus Genotype Data

Pritchard, J. K., Stephens, M., & Donnelly, P. (2000) · Genetics · doi:10.1093/genetics/155.2.945 · Cited by 33,871

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

Cox, J., & Mann, M. (2008) · Nature Biotechnology · doi:10.1038/nbt.1511 · Cited by 14,855

Instability and decay of the primary structure of DNA

Lindahl, T. (1993) · Nature · doi:10.1038/362709a0 · Cited by 5,679

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

Cox, J., Neuhauser, N., Michalski, A., Scheltema, R. A., Olsen, J. V., & Mann, M. (2011) · Journal of Proteome Research · doi:10.1021/pr101065j · Cited by 5,520

Population Structure and Eigenanalysis

Patterson, N., Price, A. L., & Reich, D. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020190 · Cited by 5,280

A draft sequence of the Neandertal genome

Green, R. E., Krause, J., Briggs, A. W., Maricic, T., Stenzel, U., Kircher, M., Patterson, N., Li, H., Zhai, W., Fritz, M. H.-Y., et al. (2010) · Science · doi:10.1126/science.1188021 · Cited by 4,318

Collagen Structure and Stability

Shoulders, M. D., & Raines, R. T. (2009) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.77.032207.120833 · Cited by 3,923

ANGSD: Analysis of Next Generation Sequencing Data

Korneliussen, T. S., Albrechtsen, A., & Nielsen, R. (2014) · BMC Bioinformatics · doi:10.1186/s12859-014-0356-4 · Cited by 2,982

Inference of human population history from individual whole-genome sequences

Li, H., & Durbin, R. (2011) · Nature · doi:10.1038/nature10231 · Cited by 2,590

The complete genome sequence of a Neanderthal from the Altai Mountains

Prüfer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, A., Renaud, G., Sudmant, P. H., de Filippo, C., et al. (2014) · Nature · doi:10.1038/nature12886 · Cited by 2,254

Massive migration from the steppe was a source for Indo-European languages in Europe

Haak, W., Lazaridis, I., Patterson, N., Rohland, N., Mallick, S., Llamas, B., Brandt, G., Nordenfelt, S., Harney, E., Stewardson, K., et al. (2015) · Nature · doi:10.1038/nature14317 · Cited by 1,940

Analytical Properties of the Nanoelectrospray Ion Source

Wilm, M. S., & Mann, M. (1996) · Analytical Chemistry · doi:10.1021/ac9509519 · Cited by 1,866

Population genomics of Bronze Age Eurasia

Allentoft, M. E., Sikora, M., Sjögren, K.-G., Rasmussen, S., Rasmussen, M., Stenderup, J., Damgaard, P. B., Schroeder, H., Ahlström, T., Vinner, L., et al. (2015) · Nature · doi:10.1038/nature14507 · Cited by 1,550

Genome-wide patterns of selection in 230 ancient Eurasians

Mathieson, I., Lazaridis, I., Rohland, N., Mallick, S., Patterson, N., Roodenberg, S. A., Harney, E., Stewardson, K., Fernandes, D., Novak, M., et al. (2015) · Nature · doi:10.1038/nature16152 · Cited by 1,515

Robust Demographic Inference from Genomic and SNP Data

Excoffier, L., Dupanloup, I., Huerta‐Sánchez, E., Sousa, V. C., & Foll, M. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003905 · Cited by 1,480

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

Gnirke, A., Melnikov, A., Maguire, J., Rogov, P., LeProust, E. M., Brockman, W., Fennell, T., Giannoukos, G., Fisher, S., Russ, C., et al. (2009) · Nature Biotechnology · doi:10.1038/nbt.1523 · Cited by 1,433 · cited 1×

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry

Ma, B., Zhang, K., Hendrie, C., Liang, C., Li, M., Doherty‐Kirby, A., & Lajoie, G. (2003) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.1196 · Cited by 1,382

Single-cell genome sequencing: current state of the science

Gawad, C., Koh, W., & Quake, S. R. (2016) · Nature Reviews Genetics · doi:10.1038/nrg.2015.16 · Cited by 1,334

Deamidation, isomerization, and racemization at asparaginyl and aspartyl residues in peptides. Succinimide-linked reactions that contribute to protein degradation.

Geiger, T. L., & Clarke, S. G. (1987) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)75855-4 · Cited by 1,312

Archean Molecular Fossils and the Early Rise of Eukaryotes

Brocks, J. J., Logan, G. A., Buick, R., & Summons, R. E. (1999) · Science · doi:10.1126/science.285.5430.1033 · Cited by 1,275

Distributional variations in marine crenarchaeotal membrane lipids: a new tool for reconstructing ancient sea water temperatures?

Stefan Schouten, A., Hopmans, E. C., Schefuß, E., & Damsté, J. S. S. (2002) · Earth and Planetary Science Letters · doi:10.1016/s0012-821x(02)00979-2 · Cited by 1,274

Mass Spectrometry in Proteomics

Aebersold, R. H., & Goodlett, D. R. (2001) · Chemical Reviews · doi:10.1021/cr990076h · Cited by 1,235

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

Huerta-Sánchez, E., Jin, X., Asan, Bianba, Z., Peter, B. M., Vinckenbosch, N., Liang, Y., Yi, X., He, M., Somel, M., et al. (2014) · Nature · doi:10.1038/nature13408 · Cited by 1,208

Molecular stratigraphy: a new tool for climatic assessment

Brassell, S. C., Eglinton, G., Marlowe, I. T., Pflaumann, U., & Sarnthein, M. (1986) · Nature · doi:10.1038/320129a0 · Cited by 1,182

Introduction to Organic Geochemistry

Killops, S. D., & Killops, V. (2004) · Wiley eBooks · doi:10.1002/9781118697214 · Cited by 1,013

2-Methylhopanoids as biomarkers for cyanobacterial oxygenic photosynthesis

Summons, R. E., Jahnke, L. L., Hope, J. M., & Logan, G. A. (1999) · Nature · doi:10.1038/23005 · Cited by 975

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

Raghavan, M., Skoglund, P., Graf, K. E., Metspalu, M., Albrechtsen, A., Moltke, I., Rasmussen, S., Stafford Jr, T. W., Orlando, L., Metspalu, E., et al. (2014) · Nature · doi:10.1038/nature12736 · Cited by 963

Ancient human genome sequence of an extinct Palaeo-Eskimo

Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., et al. (2010) · Nature · doi:10.1038/nature08835 · Cited by 849

Recalibrating equus evolution using the genome sequence of an early middle pleistocene horse

Orlando, L., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., et al. (2013) · Nature · doi:10.1038/nature12323 · Cited by 841

The Earliest Horse Harnessing and Milking

Outram, A. K., Stear, N. A., Bendrey, R., Olsen, S. L., Kasparov, A., Zaibert, V. F., Thorpe, N., & Evershed, R. P. (2009) · Science · doi:10.1126/science.1168594 · Cited by 794

DNA sequences from the quagga, an extinct member of the horse family

Higuchi, R., Bowman, B. H., Freiberger, M., Ryder, O. A., & Wilson, A. C. (1984) · Nature · doi:10.1038/312282a0 · Cited by 791

An aboriginal Australian genome reveals separate human dispersals into Asia

Rasmussen, M., Guo, X., Wang, Y., Lohmueller, K. E., Rasmussen, S., Albrechtsen, A., Skotte, L., Lindgreen, S., Metspalu, M., Jombart, T., et al. (2011) · Science · doi:10.1126/science.1211177 · Cited by 787

The genomic history of southeastern Europe

Mathieson, I., Alpaslan-Roodenberg, S., Posth, C., Szécsényi‐Nagy, A., Rohland, N., Mallick, S., Olalde, Í., Broomandkhoshbacht, N., Candilio, F., Cheronet, O., et al. (2018) · Nature · doi:10.1038/nature25778 · Cited by 759

Fossil steroids record the appearance of Demospongiae during the Cryogenian period

Love, G. D., Grosjean, E., Stalvies, C., Fike, D. A., Grotzinger, J. P., Bradley, A. S., Kelly, A. E., Bhatia, M., Meredith, W., Snape, C. E., et al. (2009) · Nature · doi:10.1038/nature07673 · Cited by 731 · cited 1×

Subtropical Arctic Ocean temperatures during the Palaeocene/Eocene thermal maximum

Scientists, T. E. 3., Sluijs, A., Schouten, S., Pagani, M., Woltering, M., Brinkhuis, H., Damsté, J. S. S., Dickens, G. R., Huber, M., Reichart, G.-J., et al. (2006) · Nature · doi:10.1038/nature04668 · Cited by 729

Tracing the peopling of the world through genomics

Nielsen, R., Akey, J. M., Jakobsson, M., Pritchard, J. K., Tishkoff, S., & Willerslev, E. (2017) · Nature · doi:10.1038/nature21347 · Cited by 728

Expansion of C4 ecosystems as an indicator of global ecological change in the late Miocene

Cerling, T. E., Wang, Y., & Quade, J. (1993) · Nature · doi:10.1038/361344a0 · Cited by 713

DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA

Hofreiter, M. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.23.4793 · Cited by 684

Direct selection of human genomic loci by microarray hybridization

Albert, T. J., Molla, M. N., Muzny, D. M., Nazareth, L., Wheeler, D., Song, X., Richmond, T. A., Middle, C. M., Rodesch, M. J., Packard, C. J., et al. (2007) · Nature Methods · doi:10.1038/nmeth1111 · Cited by 681

Earliest Date for Milk Use in the Near East and Southeastern Europe Linked to Cattle Herding

Evershed, R. P., Payne, S., Sherratt, A. G., Copley, M. S., Coolidge, J., Urem-Kotsu, D., Kotsakis, K., Özdoğan, M., Özdoğan, A. E., Nieuwenhuyse, O., et al. (2008) · Nature · doi:10.1038/nature07180 · Cited by 681

Rise and Fall of the Beringian Steppe Bison

Shapiro, B., Drummond, A. J., Rambaut, A., Wilson, M. C., Matheus, P. E., Sher, A. V., Pybus, O. G., Gilbert, M. T. P., Barnes, I., Binladen, J., et al. (2004) · Science · doi:10.1126/science.1101074 · Cited by 675

Chemical Fossils: The Geological Fate of Steroids

Mackenzie, A. S., Brassell, S. C., Eglinton, G., & Maxwell, J. R. (1982) · Science · doi:10.1126/science.217.4559.491 · Cited by 670

Parallel adaptive radiations in two major clades of placental mammals

Madsen, O., Scally, M., Douady, C. J., Kao, D. J., DeBry, R. W., Adkins, R., Amrine, H. M., Stanhope, M. J., de Jong, W. W., & Springer, M. S. (2001) · Nature · doi:10.1038/35054544 · Cited by 653

Species-specific responses of Late Quaternary megafauna to climate and humans

Lorenzen, E. D., Nogués-Bravo, D., Orlando, L., Weinstock, J., Binladen, J., Marske, K. A., Ugan, A., Borregaard, M. K., Gilbert, M. T. P., Nielsen, R., et al. (2011) · Nature · doi:10.1038/nature10574 · Cited by 638

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

Allentoft, M. E., Collins, M., Harker, D., Haile, J., Oskam, C. L., Hale, M. L., Campos, P. F., Samaniego, J. A., Gilbert, M. T. P., Willerslev, E., et al. (2012) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2012.1745 · Cited by 633

Species identification by analysis of bone collagen using matrix‐assisted laser desorption/ionisation time‐of‐flight mass spectrometry

Buckley, M., Collins, M., Thomas‐Oates, J., & Wilson, J. C. (2009) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.4316 · Cited by 629

Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions

Adler, C. J., Dobney, K., Weyrich, L. S., Kaidonis, J., Walker, A. W., Haak, W., Bradshaw, C. J. A., Townsend, G., Sołtysiak, A., Alt, K. W., et al. (2013) · Nature Genetics · doi:10.1038/ng.2536 · Cited by 621

A draft genome of Yersinia pestis from victims of the Black Death

Bos, K. I., Schuenemann, V. J., Golding, G. B., Burbano, H. A., Waglechner, N., Coombes, B. K., McPhee, J. B., DeWitte, S. N., Meyer, M., Schmedes, S., et al. (2011) · Nature · doi:10.1038/nature10549 · Cited by 619

Pathogens and host immunity in the ancient human oral cavity

Warinner, C., Rodrigues, J. F. M., Vyas, R., Trachsel, C., Shved, N., Grossmann, J., Radini, A., Hancock, Y., Tito, R. Y., Fiddyment, S., et al. (2014) · Nature Genetics · doi:10.1038/ng.2906 · Cited by 618

Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus

Weyrich, L. S., Duchêne, S., Soubrier, J., Arriola, L. A., Llamas, B., Breen, J., Morris, A. G., Alt, K. W., Caramelli, D., Dresely, V., et al. (2017) · Nature · doi:10.1038/nature21674 · Cited by 603

Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments

Willerslev, E., Hansen, A. J., Binladen, J., Brand, T. B., Gilbert, M. T. P., Shapiro, B., Bunce, M., Wiuf, C., Gilichinsky, D. A., & Cooper, A. (2003) · Science · doi:10.1126/science.1084114 · Cited by 599

The Beaker phenomenon and the genomic transformation of northwest Europe

Olalde, I., Brace, S., Allentoft, M. E., Armit, I., Kristiansen, K., Booth, T., Rohland, N., Mallick, S., Szécsényi-Nagy, A., Mittnik, A., et al. (2018) · Nature · doi:10.1038/nature25738 · Cited by 593

Organic residue analysis in archaeology: the archaeological biomarker revolution*

EVERSHED, R. P. (2008) · Archaeometry · doi:10.1111/j.1475-4754.2008.00446.x · Cited by 592

Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago

Rasmussen, S., Allentoft, M. E., Nielsen, K. R., Orlando, L., Sikora, M., Sjögren, K.-G., Pedersen, A. G., Schubert, M., Dam, A. V., Kapel, C. M. O., et al. (2015) · Cell · doi:10.1016/j.cell.2015.10.009 · Cited by 589

Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins

Meyer, M., Arsuaga, J.-L., de Filippo, C., Nagel, S., Aximu-Petri, A., Nickel, B., Martínez, I., Gracia, A., de Castro, J. M. B., Carbonell, E., et al. (2016) · Nature · doi:10.1038/nature17405 · Cited by 584

Progress in Top-Down Proteomics and the Analysis of Proteoforms

Toby, T. K., Fornelli, L., & Kelleher, N. L. (2016) · Annual Review of Analytical Chemistry · doi:10.1146/annurev-anchem-071015-041550 · Cited by 576

Fifty thousand years of Arctic vegetation and megafaunal diet

Willerslev, E., Davison, J., Moora, M., Zobel, M., Coissac, E., Edwards, M. E., Lorenzen, E. D., Vestergård, M., Gussarova, G., Haile, J., et al. (2014) · Nature · doi:10.1038/nature12921 · Cited by 569

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

Rasmussen, M., Anzick, S. L., Waters, M. R., Skoglund, P., DeGiorgio, M., Stafford, T. W., Rasmussen, S., Moltke, I., Albrechtsen, A., Doyle, S. M., et al. (2014) · Nature · doi:10.1038/nature13025 · Cited by 562

Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX

Schubert, M., Ermini, L., Sarkissian, C. D., Jónsson, H., Ginolhac, A., Schaefer, R., Martin, M. D., Fernández, R., Kircher, M., McCue, M., et al. (2014) · Nature Protocols · doi:10.1038/nprot.2014.063 · Cited by 562

Earliest evidence for cheese making in the sixth millennium bc in northern Europe

Roffet‐Salque, M., Bogucki, P., Pyzel, J., Sobkowiak‐Tabaka, I., Grygiel, R., Szmyt, M., & Evershed, R. P. (2012) · Nature · doi:10.1038/nature11698 · Cited by 545

Ancient DNA, pig domestication, and the spread of the Neolithic into Europe

Larson, G., Albarella, U., Dobney, K. M., Rowley-Conwy, P. A., Schibler, J., Tresset, A., Vigne, J., Edwards, C. J., Schlumbaum, A., Dinu, A., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0703411104 · Cited by 535

Evidence for archaic adaptive introgression in humans

Racimo, F., Sankararaman, S., Nielsen, R., & Huerta-Sánchez, E. (2015) · Nature Reviews Genetics · doi:10.1038/nrg3936 · Cited by 521

Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe

Skoglund, P., Malmström, H., Raghavan, M., Storå, J., Hall, P., Willerslev, E., Gilbert, M. T. P., Götherström, A., & Jakobsson, M. (2012) · Science · doi:10.1126/science.1216304 · Cited by 521

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal

Skoglund, P., Northoff, B. H., Shunkov, M. V., Derevianko, A. P., Pääbo, S., Krause, J., & Jakobsson, M. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1318934111 · Cited by 499

Isotope-ratio-monitoring gas chromatography-mass spectrometry

Matthews, D. E., & Hayes, J. M. (1978) · Analytical Chemistry · doi:10.1021/ac50033a022 · Cited by 491

Optimal ancient DNA yields from the inner ear part of the human petrous bone

Pinhasi, R., Fernandes, D., Sirak, K., Novak, M., Connell, S., Alpaslan-Roodenberg, S., Gerritsen, F., Moiseyev, V., Gromov, A., Raczky, P., et al. (2015) · PLoS ONE · doi:10.1371/journal.pone.0129102 · Cited by 487

Neandertal and Denisovan DNA from Pleistocene sediments

Slon, V., Hopfe, C., Weiß, C. L., Mafessoni, F., de la Rasilla, M., Lalueza-Fox, C., Rosas, A., Soressi, M., Knul, M. V., Miller, R., et al. (2017) · Science · doi:10.1126/science.aam9695 · Cited by 465

De novo peptide sequencing by deep learning

Tran, N. H., Zhang, X., Xin, L., Shan, B., & Li, M. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1705691114 · Cited by 451

Ancient Biomolecules from Deep Ice Cores Reveal a Forested Southern Greenland

Willerslev, E., Cappellini, E., Boomsma, W., Nielsen, R., Hebsgaard, M. B., Brand, T. B., Hofreiter, M., Bunce, M., Poinar, H. N., Dahl-Jensen, D., et al. (2007) · Science · doi:10.1126/science.1141758 · Cited by 430

Genomic and archaeological evidence suggest a dual origin of domestic dogs

Frantz, L. A. F., Mullin, V. E., Pionnier-Capitan, M., Lebrasseur, O., Ollivier, M., Perri, A., Linderholm, A., Mattiangeli, V., Teasdale, M. D., Dimopoulos, E. A., et al. (2016) · Science · doi:10.1126/science.aaf3161 · Cited by 430

Sequence database searches viade novo peptide sequencing by tandem mass spectrometry

Taylor, J. A., & Johnson, R. S. (1997) · Rapid Communications in Mass Spectrometry · doi:10.1002/(sici)1097-0231(19970615)11:9 · Cited by 418

Direct chemical evidence for widespread dairying in prehistoric Britain

Copley, M. S., Berstan, R., Dudd, S. N., Docherty, G., Mukherjee, A. J., Straker, V., Payne, S., & Evershed, R. P. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0335955100 · Cited by 387

Bioinformatic challenges for DNA metabarcoding of plants and animals

Coissac, É., Riaz, T., & Puillandre, N. (2012) · Molecular Ecology · doi:10.1111/j.1365-294x.2012.05550.x · Cited by 376

Postglacial viability and colonization in North America’s ice-free corridor

Pedersen, M. W., Ruter, A., Schweger, C., Friebe, H., Staff, R. A., Kjeldsen, K. K., Mendoza, M. L. Z., Beaudoin, A. B., Zutter, C., Larsen, N. K., et al. (2016) · Nature · doi:10.1038/nature19085 · Cited by 369

Direct Demonstration of Milk as an Element of Archaeological Economies

Dudd, S. N., & Evershed, R. P. (1998) · Science · doi:10.1126/science.282.5393.1478 · Cited by 368

mapDamage: testing for damage patterns in ancient DNA sequences

Ginolhac, A., Rasmussen, M., Gilbert, M. T. P., Willerslev, E., & Orlando, L. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr347 · Cited by 363

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

Miller, W., Schuster, S. C., Welch, A. J., Ratan, A., Bedoya-Reina, O. C., Zhao, F., Kim, H. L., Burhans, R. C., Drautz, D. I., Wittekindt, N. E., et al. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1210506109 · Cited by 353

First dairying in green Saharan Africa in the fifth millennium bc

Dunne, J., Evershed, R. P., Salque, M., Cramp, L., Bruni, S., Ryan, K., Biagetti, S., & di Lernia, S. (2012) · Nature · doi:10.1038/nature11186 · Cited by 352

Deamidation of Glutaminyl and Asparaginyl Residues in Peptides and Proteins

Robinson, A. B., & Rudd, C. J. (1974) · Current topics in cellular regulation · doi:10.1016/b978-0-12-152808-9.50013-4 · Cited by 348

Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries

Carpenter, M. L., Buenrostro, J. D., Valdiosera, C. E., Schroeder, H., Allentoft, M. E., Sikora, M., Rasmussen, M., Gravel, S., Guillén, S. E., Nekhrizov, G., et al. (2013) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2013.10.002 · Cited by 348

Ancient proteins resolve the evolutionary history of Darwin’s South American ungulates

Welker, F., Collins, M. J., Thomas, J. A., Wadsley, M., Brace, S., Cappellini, E., Turvey, S. T., Reguero, M., Gelfo, J. N., Kramarz, A., et al. (2015) · Nature · doi:10.1038/nature14249 · Cited by 339

Adsorption of plasmid DNA to mineral surfaces and protection against DNase I

Romanowski, G., Lorenz, M. G., & Wackernagel, W. (1991) · Applied and Environmental Microbiology · doi:10.1128/aem.57.4.1057-1061.1991 · Cited by 333

Ancient and modern environmental DNA

Pedersen, M. W., Overballe-Petersen, S., Ermini, L., Sarkissian, C. D., Haile, J., Hellstrom, M., Spens, J., Thomsen, P. F., Bohmann, K., Cappellini, E., et al. (2015) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2013.0383 · Cited by 329

Improving ancient DNA read mapping against modern reference genomes

Schubert, M., Ginolhac, A., Lindgreen, S., Thompson, J. F., AL-Rasheid, K. A., Willerslev, E., Krogh, A., & Orlando, L. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-178 · Cited by 325

Abrupt warming events drove Late Pleistocene Holarctic megafaunal turnover

Cooper, A., TURNEY, C. S. M., Hughen, K. A., Brook, B. W., McDonald, H. G., & Bradshaw, C. J. A. (2015) · Science · doi:10.1126/science.aac4315 · Cited by 324

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

Schubert, M., Jónsson, H., Chang, D., Der Sarkissian, C., Ermini, L., Ginolhac, A., Albrechtsen, A., Dupanloup, I., Foucal, A., Petersen, B., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1416991111 · Cited by 324

Analysis of organic residues of archaeological origin by high-temperature gas chromatography and gas chromatography-mass spectrometry

Evershed, R. P., Heron, C. P., & Goad, L. J. (1990) · The Analyst · doi:10.1039/an9901501339 · Cited by 323

Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans

Moreno-Mayar, J. V., Potter, B. A., Vinner, L., Steinrücken, M., Rasmussen, S., Terhorst, J., Kamm, J. A., Albrechtsen, A., Malaspinas, A.-S., Sikora, M., et al. (2018) · Nature · doi:10.1038/nature25173 · Cited by 316

Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne

Welker, F., Hajdinjak, M., Talamo, S., Jaouen, K., Dannemann, M., David, F., Julien, M., Meyer, M., Kelso, J., Barnes, I., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1605834113 · Cited by 309

Earliest evidence for the use of pottery

Craig, O. E., Saul, H., Lucquin, A., Nishida, Y., Taché, K., Clarke, L., Thompson, A., Altoft, D. T., Uchiyama, J., Ajimoto, M., et al. (2013) · Nature · doi:10.1038/nature12109 · Cited by 302

Ancient genomes revisit the ancestry of domestic and Przewalski’s horses

Gaunitz, C., Fages, A., Hanghøj, K., Albrechtsen, A., Khan, N., Schubert, M., Seguin-Orlando, A., Owens, I. J., Felkel, S., Bignon-Lau, O., et al. (2018) · Science · doi:10.1126/science.aao3297 · Cited by 298

Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture

Burbano, H. A., Hodges, E. C., Green, R. E., Briggs, A. W., Krause, J., Meyer, M., Good, J. M., Maričić, T., Johnson, P. L. F., Xuan, Z., et al. (2010) · Science · doi:10.1126/science.1188046 · Cited by 289

Reconstructing ancient genomes and epigenomes

Orlando, L., Gilbert, M. T. P., & Willerslev, E. (2015) · Nature Reviews Genetics · doi:10.1038/nrg3935 · Cited by 286

Optimized Fast and Sensitive Acquisition Methods for Shotgun Proteomics on a Quadrupole Orbitrap Mass Spectrometer

Kelstrup, C. D., Young, C., Lavallee, R. J., Nielsen, M. L., & Olsen, J. V. (2012) · Journal of Proteome Research · doi:10.1021/pr3000249 · Cited by 285

Protein sequences bound to mineral surfaces persist into deep time

Demarchi, B., Hall, S., Roncal-Herrero, T., Freeman, C. L., Woolley, J., Crisp, M. K., Wilson, J., Fotakis, A., Fischer, R., Kessler, B. M., et al. (2016) · eLife · doi:10.7554/elife.17092 · Cited by 279

Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts

Gilbert, M. T. P., Tomsho, L. P., Rendulic, S., Packard, M., Drautz, D. I., Sher, A. V., Tikhonov, A., Dalén, L., Kuznetsova, T. V., Kosintsev, P. A., et al. (2007) · Science · doi:10.1126/science.1146971 · Cited by 277

Biomolecular archaeology and lipids

Evershed, R. P. (1993) · World Archaeology · doi:10.1080/00438243.1993.9980229 · Cited by 277

Improving access to endogenous DNA in ancient bones and teeth

Damgaard, P. B., Margaryan, A., Schroeder, H., Orlando, L., Willerslev, E., & Allentoft, M. E. (2015) · Scientific Reports · doi:10.1038/srep11184 · Cited by 276

Petroleum geology and geochemistry of the Middle Proterozoic McArthur Basin, Northern Australia: III. Composition of extractable hydrocarbons

Summons, R. E., Powell, T. G., & Boreham, C. J. (1988) · Geochimica et Cosmochimica Acta · doi:10.1016/0016-7037(88)90001-4 · Cited by 256

Molecular and isotopic records of C4 grassland expansion in the late miocene

Freeman, K. H., & Colarusso, L. A. (2001) · Geochimica et Cosmochimica Acta · doi:10.1016/s0016-7037(00)00573-1 · Cited by 256

High throughput screening of organic residues in archaeological potsherds using direct acidified methanol extraction

Correa-Ascencio, M., & Evershed, R. P. (2014) · Analytical Methods · doi:10.1039/c3ay41678j · Cited by 254

Proteomic Analysis of a Pleistocene Mammoth Femur Reveals More than One Hundred Ancient Bone Proteins

Cappellini, E., Jensen, L. J., Szklarczyk, D., Ginolhac, A., da Fonseca, R. R., Stafford, T. W., Holen, S. R., Collins, M. J., Orlando, L., Willerslev, E., et al. (2011) · Journal of Proteome Research · doi:10.1021/pr200721u · Cited by 242

DMSO enhances electrospray response, boosting sensitivity of proteomic experiments

Hahne, H., Pachl, F., Ruprecht, B., Maier, S. K., Klaeger, S., Helm, D., Médard, G., Wilm, M. S., Lemeer, S., & Küster, B. (2013) · Nature Methods · doi:10.1038/nmeth.2610 · Cited by 238

Ancient DNA reveals late survival of mammoth and horse in interior Alaska

Haile, J., Froese, D. G., MacPhee, R. D. E., Roberts, R. G., Arnold, L. J., Reyes, A. V., Rasmussen, M., Nielsen, R., Brook, B. W., Robinson, S., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0912510106 · Cited by 235

Ancient genomic changes associated with domestication of the horse

Librado, P., Gamba, C., Gaunitz, C., Sarkissian, C. S. I. D., Pruvost, M., Albrechtsen, A., Fages, A., Khan, N., Schubert, M., Jagannathan, V., et al. (2017) · Science · doi:10.1126/science.aam5298 · Cited by 231

Organic Mass Spectrometry in Art and Archaeology

(2009) · doi:10.1002/9780470741917 · Cited by 225

Experimental approaches to the interpretation of absorbed organic residues in archaeological ceramics

Evershed, R. P. (2008) · World Archaeology · doi:10.1080/00438240801889373 · Cited by 214

A new model for ancient DNA decay based on paleogenomic meta-analysis

Kistler, L., Ware, R., Smith, O., Collins, M. J., & Allaby, R. G. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx361 · Cited by 212

Integrating historical, clinical and molecular genetic data in order to explain the origin and virulence of the 1918 Spanish influenza virus

Taubenberger, J. K., Reid, A. H., Janczewski, T. A., & Fanning, T. G. (2001) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2001.1020 · Cited by 209

Sex determination of human remains from peptides in tooth enamel

Stewart, N. A., Gerlach, R. F., Gowland, R. L., Gron, K. J., & Montgomery, J. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1714926115 · Cited by 208

Quantification and distribution of lipid in archaeological ceramics: implications for sampling potsherds for organic residue analysis and the classification of vessel use

CHARTERS, S., EVERSHED, R. P., GOAD, L. J., LEYDEN, A., BLINKHORN, P. W., & DENHAM, V. (1993) · Archaeometry · doi:10.1111/j.1475-4754.1993.tb01036.x · Cited by 202

The Human Condition—A Molecular Approach

Pääbo, S. (2014) · Cell · doi:10.1016/j.cell.2013.12.036 · Cited by 197

Nuclear Gene Indicates Coat-Color Polymorphism in Mammoths

Römpler, H., Rohland, N., Lalueza‐Fox, C., Willerslev, E., Kuznetsova, T. V., Rabeder, G., Bertranpetit, J., Schöneberg, T., & Hofreiter, M. (2006) · Science · doi:10.1126/science.1128994 · Cited by 191

Reconstructing Ancient Proteins to Understand the Causes of Structure and Function

Hochberg, G. K. A., & Thornton, J. W. (2017) · Annual Review of Biophysics · doi:10.1146/annurev-biophys-070816-033631 · Cited by 190

De Novo Sequencing and Homology Searching

Ma, B., & Johnson, R. S. (2011) · Molecular & Cellular Proteomics · doi:10.1074/mcp.o111.014902 · Cited by 189

Widespread exploitation of the honeybee by early Neolithic farmers

Roffet-Salque, M., Regert, M., Evershed, R. P., Outram, A. K., Cramp, L. J. E., Decavallas, O., Dunne, J., Gerbault, P., Mileto, S., Mirabaud, S., et al. (2015) · Nature · doi:10.1038/nature15757 · Cited by 187

Statistical Evidence for Miscoding Lesions in Ancient DNA Templates

Hansen, A. J., Willerslev, E., Wiuf, C., Mourier, T., & Arctander, P. (2001) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a003800 · Cited by 184

Proteins in Art, Archaeology, and Paleontology: From Detection to Identification

Dallongeville, S., Garnier, N., Rolando, C., & Tokarski, C. (2016) · Chemical Reviews · doi:10.1021/acs.chemrev.5b00037 · Cited by 172

Free and bound fatty acid oxidation products in archaeological ceramic vessels

Regert, M., Bland, H. A., Dudd, S. N., Bergen, P. F. V., & Evershed, R. P. (1998) · Proceedings of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rspb.1998.0536 · Cited by 168

Animal origin of 13th-century uterine vellum revealed using noninvasive peptide fingerprinting

Fiddyment, S., Holsinger, B., Ruzzier, C., Devine, A., Binois, A., Albarella, U., Fischer, R., Nichols, E., Curtis, A., Cheese, E., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1512264112 · Cited by 168

A comparative study of ancient environmental DNA to pollen and macrofossils from lake sediments reveals taxonomic overlap and additional plant taxa

Pedersen, M. W., Ginolhac, A., Orlando, L., Olsen, J., Andersen, K., Holm, J., Funder, S., Willerslev, E., & Kjær, K. H. (2013) · Quaternary Science Reviews · doi:10.1016/j.quascirev.2013.06.006 · Cited by 165

Earliest direct evidence of plant processing in prehistoric Saharan pottery

Dunne, J., Mercuri, A. M., Evershed, R. P., Bruni, S., & di Lernia, S. (2016) · Nature Plants · doi:10.1038/nplants.2016.194 · Cited by 164

Identification of a new hominin bone from Denisova Cave, Siberia using collagen fingerprinting and mitochondrial DNA analysis

Brown, S., Higham, T., Slon, V., Pääbo, S., Meyer, M., Douka, K., Brock, F., Comeskey, D., Procopio, N., Shunkov, M., et al. (2016) · Scientific Reports · doi:10.1038/srep23559 · Cited by 162

Demonstration of Protein-Based Human Identification Using the Hair Shaft Proteome

Parker, G. J., Leppert, M., Anex, D. S., Hilmer, J. K., Matsunami, N., Baird, L. M., Stevens, J., Parsawar, K., Durbin-Johnson, B. P., Rocke, D. M., et al. (2016) · PLoS ONE · doi:10.1371/journal.pone.0160653 · Cited by 150

Using ancient DNA to study the origins and dispersal of ancestral Polynesian chickens across the Pacific

Thomson, V. A., Lebrasseur, O., Austin, J. J., Hunt, T. L., Burney, D. A., Denham, T. P., Rawlence, N. J., Wood, J. R., Gongora, J., Flink, L. G., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1320412111 · Cited by 149

Resolving the bulk δ15N values of ancient human and animal bone collagen via compound-specific nitrogen isotope analysis of constituent amino acids

Styring, A., Sealy, J. C., & Evershed, R. P. (2009) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2009.09.022 · Cited by 142

Site‐specific deamidation of glutamine: a new marker of bone collagen deterioration

van Doorn, N. L., Wilson, J., Hollund, H., Soressi, M., & Collins, M. J. (2012) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.6351 · Cited by 140

True single-molecule DNA sequencing of a pleistocene horse bonePreprint

Orlando, L., Ginolhac, A., Raghavan, M., Vilstrup, J. T., Rasmussen, M., Magnussen, K., Steinmann, K. E., Kapranov, P., Thompson, J. F., Zazula, G. D., et al. (2011) · Genome Research · doi:10.1101/gr.122747.111 · Cited by 130

Application and comparison of large-scale solution-based DNA capture-enrichment methods on ancient DNA

Ávila‐Arcos, M. C., Cappellini, E., Romero-Navarro, J. A., Wales, N., Moreno-Mayar, J. V., Rasmussen, M. A., Fordyce, S. L., Montiel, R., Vielle‐Calzada, J., Willerslev, E., et al. (2011) · Scientific Reports · doi:10.1038/srep00074 · Cited by 129

A novel marine dietary indicator utilising compound-specific bone collagen amino acid δ13C values of ancient humans

Corr, L. T., Sealy, J. C., Horton, M., & Evershed, R. P. (2005) · Journal of Archaeological Science · doi:10.1016/j.jas.2004.10.002 · Cited by 127

More on Contamination: The Use of Asymmetric Molecular Behavior to Identify Authentic Ancient Human DNA

Malmström, H., Svensson, E., Gilbert, M. T. P., Willerslev, E., Götherström, A., & Holmlund, G. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm015 · Cited by 125

Ancient collagen reveals evolutionary history of the endemic South American ‘ungulates’

Buckley, M. (2015) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2014.2671 · Cited by 120

A Phenol–Chloroform Protocol for Extracting DNA from Ancient Samples

Barnett, R., & Larson, G. (2011) · Methods in molecular biology · doi:10.1007/978-1-61779-516-9_2 · Cited by 118

A Minimally-Invasive Method for Sampling Human Petrous Bones from the Cranial Base for Ancient DNA Analysis

Sirak, K. A., Fernandes, D. M., Cheronet, O., Novak, M., Gamarra, B., Balassa, T., Bernert, Z., Cséki, A., Dani, J., Gallina, J. Z., et al. (2017) · BioTechniques · doi:10.2144/000114558 · Cited by 113

A role for iron and oxygen chemistry in preserving soft tissues, cells and molecules from deep time

Schweitzer, M. H., Zheng, W., Cleland, T. P., Goodwin, M. B., Boatman, E., Theil, E., Marcus, M. A., & Fakra, S. C. (2014) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2013.2741 · Cited by 112

The biomolecular paleontology of continental fossils

Briggs, D. E. G., Evershed, R. P., & Lockheart, M. J. (2000) · Paleobiology · doi:10.1666/0094-8373(2000)26[169:tbpocf]2.0.co;2 · Cited by 112

Proteomic analysis of human dental cementum and alveolar bone

Salmon, C. R., Tomazela, D. M., Silvério, K. G., Foster, B. L., Leme, A. F. P., Sallum, E. A., Somerman, M. J., & Nociti, F. H. (2013) · Journal of Proteomics · doi:10.1016/j.jprot.2013.08.016 · Cited by 105

Structural investigations of sulphur-rich macromolecular oil fractions and a kerogen by sequential chemical degradation

Richnow, H. H., Jenisch, A., & Michaelis, W. (1992) · Organic Geochemistry · doi:10.1016/0146-6380(92)90005-i · Cited by 104

Volatile Compounds in Archaeological Plant Remains and the Maillard Reaction During Decay of Organic Matter

Evershed, R. P., Bland, H. A., van Bergen, P. F., Carter, J. F., Horton, M., & Rowley-Conwy, P. A. (1997) · Science · doi:10.1126/science.278.5337.432 · Cited by 100

A multidisciplinary study of archaeological grape seeds

Cappellini, E., Gilbert, M. T. P., Geuna, F., Fiorentino, G., Hall, A., THOMAS‐OATES, J. E., Ashton, P. D., Ashford, D. A., Arthur, P., Campos, P. F., et al. (2009) · Die Naturwissenschaften · doi:10.1007/s00114-009-0629-3 · Cited by 98

New strategies for characterizing ancient proteins using matrix-assisted laser desorption ionization mass spectrometry

Ostrom, P. H., Schall, M., Gandhi, H., Shen, T., Hauschka, P. V., Strahler, J. R., & Gage, D. A. (2000) · Geochimica et Cosmochimica Acta · doi:10.1016/s0016-7037(99)00381-6 · Cited by 96

A mitogenomic timetree for Darwin’s enigmatic South American mammal Macrauchenia patachonica

Westbury, M. V., Baleka, S., Barlow, A., Hartmann, S. A., Paijmans, J. L. A., Kramarz, A., Forasiepi, A. M., Bond, M., Gelfo, J. N., Reguero, M. A., et al. (2017) · Nature Communications · doi:10.1038/ncomms15951 · Cited by 96

RECONSTRUCTING ANCIENT YEMENI COMMERCIAL ROUTES DURING THE MIDDLE AGES USING STRUCTURAL CHARACTERIZATION OF TERPENOID RESINS*

Regert, M., Devièse, T., Hô, A. L., & Rougeulle, A. (2008) · Archaeometry · doi:10.1111/j.1475-4754.2007.00372.x · Cited by 95

Expansion for the Brachylophosaurus canadensis Collagen I Sequence and Additional Evidence of the Preservation of Cretaceous Protein

Schroeter, E. R., DeHart, C. J., Cleland, T. P., Zheng, W., Thomas, P. M., Kelleher, N. L., Bern, M., & Schweitzer, M. H. (2017) · Journal of Proteome Research · doi:10.1021/acs.jproteome.6b00873 · Cited by 94

Experimental conditions improving in‐solution target enrichment for ancient DNA

Cruz‐Dávalos, D. I., Llamas, B., Gaunitz, C., Fages, A., Gamba, C., Soubrier, J., Librado, P., Seguin‐Orlando, A., Pruvost, M., Alfarhan, A. H., et al. (2017) · Molecular Ecology Resources · doi:10.1111/1755-0998.12595 · Cited by 90

Advancing Top-down Analysis of the Human Proteome Using a Benchtop Quadrupole-Orbitrap Mass Spectrometer

Fornelli, L., Durbin, K. R., Fellers, R. T., Early, B. P., Greer, J. B., LeDuc, R. D., Compton, P. D., & Kelleher, N. L. (2017) · Journal of Proteome Research · doi:10.1021/acs.jproteome.6b00698 · Cited by 88

A Molecular Phylogeny of Plesiorycteropus Reassigns the Extinct Mammalian Order ‘Bibymalagasia’

Buckley, M. (2013) · PLoS ONE · doi:10.1371/journal.pone.0059614 · Cited by 86

Biologically and diagenetically derived peptide modifications in moa collagens

Cleland, T. P., Schroeter, E. R., & Schweitzer, M. H. (2015) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2015.0015 · Cited by 84

Preserved Proteins from Extinct Bison latifrons Identified by Tandem Mass Spectrometry; Hydroxylysine Glycosides are a Common Feature of Ancient Collagen

Hill, R. C., Wither, M. J., Nemkov, T. G., Barrett, A. S., D’Alessandro, A., Dzieciątkowska, M., & Hansen, K. C. (2015) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m114.047787 · Cited by 81

Optimization of DNA Recovery and Amplification from Non-Carbonized Archaeobotanical Remains

Wales, N., Andersen, K., Cappellini, E., Ávila-Arcos, M. C., & Gilbert, M. T. P. (2014) · PLoS ONE · doi:10.1371/journal.pone.0086827 · Cited by 80

An experimental phylogeny to benchmark ancestral sequence reconstruction

Randall, R. N., Radford, C. E., Roof, K. A., Natarajan, D. K., & Gaucher, E. A. (2016) · Nature Communications · doi:10.1038/ncomms12847 · Cited by 73

Immunological reactions from fossil material

Lowenstein, J. M. (1981) · Philosophical transactions of the Royal Society of London. Series B, Biological sciences · doi:10.1098/rstb.1981.0022 · Cited by 71

Novel Substrates as Sources of Ancient DNA: Prospects and Hurdles

Green, E. J., & Speller, C. (2017) · Genes · doi:10.3390/genes8070180 · Cited by 71

The significance of petroleum bitumen in ancient Egyptian mummies

Clark, K. A., Ikram, S., & Evershed, R. P. (2016) · Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences · doi:10.1098/rsta.2016.0229 · Cited by 67

Middle Pleistocene protein sequences from the rhinoceros genus Stephanorhinus and the phylogeny of extant and extinct Middle/Late Pleistocene Rhinocerotidae

Welker, F., Smith, G. M., Hutson, J. M., Kindler, L., Garcia-Moreno, A., Villaluenga, A., Turner, E., & Gaudzinski-Windheuser, S. (2017) · PeerJ · doi:10.7717/peerj.3033 · Cited by 67

Understanding Tuberculosis - Deciphering the Secret Life of the Bacilli

Cardona, P.-J. (2012) · InTech eBooks · doi:10.5772/2479 · Cited by 66

DNA from pollen: principles and potential

Bennett, K. D., & Parducci, L. (2006) · The Holocene · doi:10.1177/0959683606069383 · Cited by 62

Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans

Racimo, F., Renaud, G., & Slatkin, M. (2016) · PLOS Genetics · doi:10.1371/journal.pgen.1005972 · Cited by 56

Resolution of the type material of the Asian elephant, Elephas maximus Linnaeus, 1758 (Proboscidea, Elephantidae)

Cappellini, E., Gentry, A., Palkopoulou, E., Ishida, Y., Cram, D. F., Roos, A. M., Watson, M., Johansson, U. S., Fernholm, B., Agnelli, P., et al. (2013) · Zoological Journal of the Linnean Society · doi:10.1111/zoj.12084 · Cited by 55

Peptide sequences from the first Castoroides ohioensis skull and the utility of old museum collections for palaeoproteomics

Cleland, T. P., Schroeter, E. R., Feranec, R. S., & Vashishth, D. (2016) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2016.0593 · Cited by 55

Lipidomics for Geochemistry

Pearson, A. (2013) · Elsevier eBooks · doi:10.1016/b978-0-08-095975-7.01022-6 · Cited by 55

Probing dietary change of the Kwädąy Dän Ts'ìnchį individual, an ancient glacier body from British Columbia: I. Complementary use of marine lipid biomarker and carbon isotope signatures as novel indicators of a marine diet

Corr, L. T., Richards, M. P., Jim, S., Ambrose, S. H., Mackie, A., Beattie, O., & Evershed, R. P. (2008) · Journal of Archaeological Science · doi:10.1016/j.jas.2008.01.018 · Cited by 53

Five thousand years of tropical lake sediment DNA records from Benin

Brémond, L., Favier, C., Ficetola, G. F., Tossou, M. G., Akouégninou, A., Gielly, L., Giguet‐Covex, C., Oslisly, R., & Salzmann, U. (2017) · Quaternary Science Reviews · doi:10.1016/j.quascirev.2017.06.025 · Cited by 53

Molecular signatures of fossil leaves provide unexpected new evidence for extinct plant relationships

Vajda, V., Pučetaitė, M., McLoughlin, S., Engdahl, A., Heimdal, J., & Uvdal, P. (2017) · Nature Ecology & Evolution · doi:10.1038/s41559-017-0224-5 · Cited by 46

Characterisation of ‘bog butter’ using a combination of molecular and isotopic techniques

Berstan, R., Dudd, S. N., Copley, M. S., Morgan, E. D., Quye, A., & Evershed, R. P. (2004) · The Analyst · doi:10.1039/b313436a · Cited by 42

Organic chemistry of balms used in the preparation of pharaonic meat mummies

Clark, K. A., Ikram, S., & Evershed, R. P. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1315160110 · Cited by 38

Partial amino acid sequence of osteocalcin from an extinct species of ratite bird.

Nl, H., Tseng, A., & Chapman, G. E. (1990) · PubMed · Cited by 38

Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing

Vinner, L., Mourier, T., Friis-Nielsen, J., Gniadecki, R., Dybkær, K., Rosenberg, J., Langhoff, J. L., Cruz, D. F. S., Fonager, J., Izarzugaza, J. M. G., et al. (2015) · Scientific Reports · doi:10.1038/srep13201 · Cited by 37

National Academy of Sciences: Abstracts of Papers Presented at the Annual Meeting April 26-28, 1954, Washington, D.C.

(1954) · Science · doi:10.1126/science.119.3096.576 · Cited by 32

The estimation of glutaminyl deamidation and aspartyl cleavage rates in glucagon

Joshi, A. B., & Kirsch, L. E. (2004) · International Journal of Pharmaceutics · doi:10.1016/j.ijpharm.2004.01.006 · Cited by 30

Solid Digestion of Demineralized Bone as a Method To Access Potentially Insoluble Proteins and Post-Translational Modifications

Cleland, T. P. (2017) · Journal of Proteome Research · doi:10.1021/acs.jproteome.7b00670 · Cited by 30

Neanderthal and Denisova tooth protein variants in present-day humans

Zanolli, C., Hourset, M., Esclassan, R., & Mollereau, C. (2017) · PLoS ONE · doi:10.1371/journal.pone.0183802 · Cited by 24

PALEOBOTANY | Ancient Plant DNA

Wales, N., Allaby, R. G., Willerslev, E., & Gilbert, M. T. P. (2013) · Elsevier eBooks · doi:10.1016/b978-0-444-53643-3.00202-8 · Cited by 13

Early human dispersals within the Americas

Moreno-Mayar, J. V., Vinner, L., Damgaard, P. D. B., Castro, C. D. L. F., Chan, J., Spence, J. P., Allentoft, M. E., Vimala, T., Racimo, F., Pinotti, T., et al. (2018) · Science · doi:10.1126/science.aav2621 · Cited by 383

Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations

Capo, É., Giguet‐Covex, C., Rouillard, A., Nota, K., Heintzman, P. D., Vuillemin, A., Arizteguí, D., Arnaud, F., Belle, S., Bertilsson, S., et al. (2021) · Quaternary · doi:10.3390/quat4010006 · Cited by 261

Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny

Cappellini, E., Welker, F., Pandolfi, L., Ramos-Madrigal, J., Samodova, D., Rüther, P. L., Fotakis, A. K., Lyon, D., Moreno-Mayar, J. V., Bukhsianidze, M., et al. (2019) · Nature · doi:10.1038/s41586-019-1555-y · Cited by 205

Peopling of the Americas as inferred from ancient genomics

Willerslev, E., & Meltzer, D. J. (2021) · Nature · doi:10.1038/s41586-021-03499-y · Cited by 131

Diverse variola virus (smallpox) strains were widespread in northern Europe in the Viking Age

Mühlemann, B., Vinner, L., Margaryan, A., Wilhelmson, H., Castro, C. D. L. F., Allentoft, M. E., Damgaard, P. D. B., Hansen, A. J., Nielsen, S. H., Strand, L. M., et al. (2020) · Science · doi:10.1126/science.aaw8977 · Cited by 170

Ancient biomolecules unravel our history. A technical update with examples from the Middle East

Tomei, S., D’Aurelio, A., Sakal, F., Castorina, F., Naimi, F. A., & Labarga, C. M. (2023) · IRIS Research product catalog (Sapienza University of Rome) · doi:10.32474/jaas.2023.08.000290

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