Hippocampal conjunctive encoding, storage, and recall: Avoiding a trade‐off
Abstract
The hippocampus and related structures are thought to be capable of 1) representing cortical activity in a way that minimizes overlap of the representations assigned to different cortical patterns (pattern separation); and 2) modifying synaptic connections so that these representations can later be reinstated from partial or noisy versions of the cortical activity pattern that was present at the time of storage (pattern completion). We point out that there is a trade-off between pattern separation and completion and propose that the unique anatomical and physiological properties of the hippocampus might serve to minimize this trade-off. We use analytical methods to determine quantitative estimates of both separation and completion for specified parameterized models of the hippocampus. These estimates are then used to evaluate the role of various properties and of the hippocampus, such as the activity levels seen in different hippocampal regions, synaptic potentiation and depression, the multi-layer connectivity of the system, and the relatively focused and strong mossy fiber projections. This analysis is focused on the feedforward pathways from the entorhinal cortex (EC) to the dentate gyrus (DG) and region CA3. Among our results are the following: 1) Hebbian synaptic modification (LTP) facilitates completion but reduces separation, unless the strengths of synapses from inactive presynaptic units to active postsynaptic units are reduced (LTD). 2) Multiple layers, as in EC to…
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The hippocampus plays a vital role in learning episodic memory by encoding them through a process that separates similar personal experiences and stores them distinctly, thereby minimizing interference between different episodic memory.
“The hippocampus in the brain plays a vital role in learning episodic memory by encoding them through a process that separates similar personal experiences and stores them distinctly, thereby minimizing interference between different episodic memory [77, 78, 79].”
From Human-inspired Perspectives: A Survey on AI Long-term Memory (2024) · cites this paper as [78]
The hippocampus and cortex of the brain are involved in the encoding of memory, with the hippocampus encoding unique episodic information through its pattern separation properties and the cortex encoding more generalized information through its distributed representations.
“The hippocampus and cortex of the brain are involved in the encoding of memory, with the hippocampus encoding unique episodic information through its pattern separation properties and the cortex encoding more generalized information through its distributed representations [77, 78, 96, 79].”
From Human-inspired Perspectives: A Survey on AI Long-term Memory (2024) · cites this paper as [78]
Cites
Hebb, D. O. (2005) · doi:10.4324/9781410612403 · Cited by 9,825 · see citing works
Hopfield, J. J. (1984) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.81.10.3088 · Cited by 6,918 · see citing works
McClelland, J. L., McNaughton, B. L., & O'Reilly, R. C. (1995) · Psychological Review · doi:10.1037/0033-295x.102.3.419 · Cited by 5,256 · see citing works
Self-citationMarr, D. (1969) · The Journal of Physiology · doi:10.1113/jphysiol.1969.sp008820 · Cited by 3,253 · see citing works
Simple memory: a theory for archicortex
Marr, D. (1971) · Philosophical Transactions of the Royal Society of London. B, Biological Sciences · doi:10.1098/rstb.1971.0078 · Cited by 2,771 · see citing works
Dynamics of the Hippocampal Ensemble Code for Space
Wilson, M. A., & McNaughton, B. L. (1993) · Science · doi:10.1126/science.8351520 · Cited by 2,350 · see citing works
Hippocampal synaptic enhancement and information storage within a distributed memory system
McNaughton, B. L., & Morris, R. G. M. (1987) · Trends in Neurosciences · doi:10.1016/0166-2236(87)90011-7 · Cited by 1,304 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
An Integrative Theory of Prefrontal Cortex Function
Miller, E. K., & Cohen, J. D. (2001) · Annual Review of Neuroscience · doi:10.1146/annurev.neuro.24.1.167 · Cited by 12,803 · see citing works
McClelland, J. L., McNaughton, B. L., & O'Reilly, R. C. (1995) · Psychological Review · doi:10.1037/0033-295x.102.3.419 · Cited by 5,256 · see citing works
Self-citationNew neurons and new memories: how does adult hippocampal neurogenesis affect learning and memory?
Deng, W., Aimone, J. B., & Gage, F. H. (2010) · Nature reviews. Neuroscience · doi:10.1038/nrn2822 · Cited by 2,120 · see citing works
Pattern Separation in the Dentate Gyrus and CA3 of the Hippocampus
Leutgeb, J. K., Leutgeb, S., Moser, M.-B., & Moser, E. I. (2007) · Science · doi:10.1126/science.1135801 · Cited by 1,601 · see citing works
Pattern separation in the hippocampus
Yassa, M. A., & Stark, C. E. L. (2011) · Trends in Neurosciences · doi:10.1016/j.tins.2011.06.006 · Cited by 1,544 · see citing works
Adult Neurogenesis in the Hippocampus: From Stem Cells to Behavior
Gonçalves, J. T., Schafer, S. T., & Gage, F. H. (2016) · Cell · doi:10.1016/j.cell.2016.10.021 · Cited by 1,122 · see citing works
Adult hippocampal neurogenesis and cognitive flexibility — linking memory and mood
Anacker, C., & Hen, R. (2017) · Nature Reviews Neuroscience · doi:10.1038/nrn.2017.45 · Cited by 1,014 · see citing works
Dentate gyrus NMDA receptors mediate rapid pattern separation in the hippocampal network
McHugh, T. J., Jones, M. W., Quinn, J. J., Balthasar, N., Coppari, R., Elmquist, J. K., Lowell, B. B., Fanselow, M. S., Wilson, M. A., & Tonegawa, S. (2007) · Science · doi:10.1126/science.1140263 · Cited by 958 · see citing works
Interactions between frontal cortex and basal ganglia in working memory: A computational model
FRANK, M. J., LOUGHRY, B., & O'REILLY, R. C. (2001) · Cognitive, Affective, & Behavioral Neuroscience · doi:10.3758/cabn.1.2.137 · Cited by 879 · see citing works
Self-citationTHE COGNITIVE NEUROSCIENCE OF CONSTRUCTIVE MEMORY
Schacter, D. L., Norman, K. A., & Koutstaal, W. (1998) · Annual Review of Psychology · doi:10.1146/annurev.psych.49.1.289 · Cited by 827 · see citing works
Hippocampal replay is not a simple function of experience
Gupta, A. S., van der Meer, M. A. A., Touretzky, D. S., & Redish, A. D. (2010) · Neuron · doi:10.1016/j.neuron.2010.01.034 · Cited by 733 · see citing works
What Learning Systems do Intelligent Agents Need? Complementary Learning Systems Theory Updated
Kumaran, D., Hassabis, D., & McClelland, J. L. (2016) · Trends in Cognitive Sciences · doi:10.1016/j.tics.2016.05.004 · Cited by 736 · see citing works
Self-citationHippocampal synaptic plasticity, spatial memory and anxiety
Bannerman, D. M., Sprengel, R., Sanderson, D. J., McHugh, S. B., Rawlins, J. N. P., Monyer, H., & Seeburg, P. H. (2014) · Nature Reviews Neuroscience · doi:10.1038/nrn3677 · Cited by 688 · see citing works
Aimone, J. B., Deng, W., & Gage, F. H. (2011) · Neuron · doi:10.1016/j.neuron.2011.05.010 · Cited by 663 · see citing works
Regulation and function of adult neurogenesis: from genes to cognition.
Aimone, J. B., Li, Y., Lee, S. W., Clemenson, G. D., Deng, W., & Gage, F. H. (2014) · Physiological Reviews · doi:10.1152/physrev.00004.2014 · Cited by 635 · see citing works
NMDA receptors, place cells and hippocampal spatial memory
Nakazawa, K., McHugh, T. J., Wilson, M. A., & Tonegawa, S. (2004) · Nature Reviews Neuroscience · doi:10.1038/nrn1385 · Cited by 619 · see citing works
Hasselmo, M. E. (2005) · Hippocampus · doi:10.1002/hipo.20116 · Cited by 502 · see citing works
Transgenic inhibition of synaptic transmission reveals role of CA3 output in hippocampal learning
Nakashiba, T., Young, J. Z., McHugh, T. J., Buhl, D. L., & Tonegawa, S. (2008) · Science · doi:10.1126/science.1151120 · Cited by 492 · see citing works
Context, learning, and extinction
Gershman, S. J., Blei, D. M., & Niv, Y. (2010) · Psychological Review · doi:10.1037/a0017808 · Cited by 386 · see citing works
Banishing the homunculus: Making working memory work
Hazy, T. E., Frank, M. J., & O’Reilly, R. C. (2006) · Neuroscience · doi:10.1016/j.neuroscience.2005.04.067 · Cited by 385 · see citing works
Self-citationA Multiplexed, Heterogeneous, and Adaptive Code for Navigation in Medial Entorhinal Cortex
Hardcastle, K., Maheswaranathan, N., Ganguli, S., & Giocomo, L. M. (2017) · Neuron · doi:10.1016/j.neuron.2017.03.025 · Cited by 312 · see citing works
O'Reilly, R. C., & Norman, K. A. (2002) · Trends in Cognitive Sciences · doi:10.1016/s1364-6613(02)02005-3 · Cited by 351 · see citing works
Self-citationDistributed Representations in Memory: Insights from Functional Brain Imaging
Rissman, J., & Wagner, A. D. (2012) · Annual Review of Psychology · doi:10.1146/annurev-psych-120710-100344 · Cited by 299 · see citing works
Bussey, T. J., Holmes, A., Lyon, L., Mar, A. C., McAllister, K. A. L., Nithianantharajah, J., Oomen, C. A., & Saksida, L. M. (2012) · Neuropharmacology · doi:10.1016/j.neuropharm.2011.04.011 · Cited by 299 · see citing works
Adult neurogenesis: integrating theories and separating functions
Aimone, J. B., Deng, W., & Gage, F. H. (2010) · Trends in Cognitive Sciences · doi:10.1016/j.tics.2010.04.003 · Cited by 303 · see citing works
Skaggs, W. E., & McNaughton, B. L. (1998) · The Journal of Neuroscience · doi:10.1523/jneurosci.18-20-08455.1998 · Cited by 287 · see citing works
Context representations, context functions, and the parahippocampal–hippocampal system
Rudy, J. W. (2009) · Learning & Memory · doi:10.1101/lm.1494409 · Cited by 296 · see citing works
Hippocampal oxytocin receptors are necessary for discrimination of social stimuli
Raam, T., McAvoy, K. M., Besnard, A., Veenema, A. H., & Sahay, A. (2017) · Nature Communications · doi:10.1038/s41467-017-02173-0 · Cited by 292 · see citing works
Grounding cognitive control in associative learning
Abrahamse, E., Braem, S., Notebaert, W., & Verguts, T. (2016) · Psychological Bulletin · doi:10.1037/bul0000047 · Cited by 276 · see citing works
The role of hippocampal subregions in detecting spatial novelty
Lee, I., Hunsaker, M. R., & Kesner, R. P. (2005) · Behavioral Neuroscience · doi:10.1037/0735-7044.119.1.145 · Cited by 270 · see citing works
Conjunctive representations, the hippocampus, and contextual fear conditioning
RUDY, J. W., & O'REILLY, R. C. (2001) · Cognitive, Affective, & Behavioral Neuroscience · doi:10.3758/cabn.1.1.66 · Cited by 247 · see citing works
Self-citationResistance to forgetting associated with hippocampus-mediated reactivation during new learning
Kuhl, B. A., Shah, A. T., DuBrow, S., & Wagner, A. D. (2010) · Nature Neuroscience · doi:10.1038/nn.2498 · Cited by 225 · see citing works
Lissek, S., Rabin, S. J., McDowell, D. J., Dvir, S., Bradford, D. E., Geraci, M., Pine, D. S., & Grillon, C. (2009) · Behaviour Research and Therapy · doi:10.1016/j.brat.2008.10.017 · Cited by 239 · see citing works
Pattern separation, completion, and categorisation in the hippocampus and neocortex
Rolls, E. T. (2016) · Neurobiology of Learning and Memory · doi:10.1016/j.nlm.2015.07.008 · Cited by 234 · see citing works
Function of hippocampus in “insight” of problem solving
Luo, J., & Niki, K. (2003) · Hippocampus · doi:10.1002/hipo.10069 · Cited by 221 · see citing works
Attractor Dynamics of Spatially Correlated Neural Activity in the Limbic System
Knierim, J. J., & Zhang, K. (2012) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-062111-150351 · Cited by 222 · see citing works
Koster, R., Chadwick, M. J., Chen, Y., Berron, D., Banino, A., Düzel, E., Hassabis, D., & Kumaran, D. (2018) · Neuron · doi:10.1016/j.neuron.2018.08.009 · Cited by 191 · see citing works
Adult neurogenesis modifies excitability of the dentate gyrus
Ikrar, T., Guo, N., He, K., Besnard, A., Levinson, S., Hill, A., Lee, H.-K., Hen, R., Xu, X., & Sahay, A. (2013) · Frontiers in Neural Circuits · doi:10.3389/fncir.2013.00204 · Cited by 192 · see citing works
Adult neurogenesis and neurodegenerative diseases: A systems biology perspective
Horgusluoglu, E., Nudelman, K., Nho, K., & Saykin, A. J. (2017) · American Journal of Medical Genetics Part B: Neuropsychiatric Genetics · doi:10.1002/ajmg.b.32429 · Cited by 174 · see citing works
Imaging the Human Medial Temporal Lobe with High-Resolution fMRI
Carr, V. A., Rissman, J., & Wagner, A. D. (2010) · Neuron · doi:10.1016/j.neuron.2009.12.022 · Cited by 174 · see citing works
False memories with age: neural and cognitive underpinnings
Devitt, A. L., & Schacter, D. L. (2016) · Neuropsychologia · doi:10.1016/j.neuropsychologia.2016.08.030 · Cited by 171 · see citing works
Bernier, B. E., Lacagnina, A. F., Ayoub, A., Shue, F., Zemelman, B. V., Krasne, F. B., & Drew, M. R. (2017) · The Journal of Neuroscience · doi:10.1523/jneurosci.3029-16.2017 · Cited by 168 · see citing works
Knierim, J. J., & Hamilton, D. A. (2011) · Physiological Reviews · doi:10.1152/physrev.00021.2010 · Cited by 148 · see citing works
Immature Dentate Gyrus: An Endophenotype of Neuropsychiatric Disorders
Hagihara, H., Takao, K., Walton, N. M., Matsumoto, M., & Miyakawa, T. (2013) · Neural Plasticity · doi:10.1155/2013/318596 · Cited by 123 · see citing works
BDNF in the dentate gyrus is required for consolidation of “pattern-separated” memories.
Bekinschtein, P., Kent, B. A., Oomen, C. A., Clemenson, G. D., Gage, F. H., Saksida, L. M., & Bussey, T. J. (2013) · Cell Reports · doi:10.1016/j.celrep.2013.09.027 · Cited by 124 · see citing works
Reagh, Z. M., & Ranganath, C. (2018) · Neuroscience Letters · doi:10.1016/j.neulet.2018.04.050 · Cited by 83 · see citing works
Automated measurement of hippocampal subfields in PTSD: evidence for smaller dentate gyrus volume
Hayes, J. P., Hayes, S., Miller, D. R., Lafleche, G., Logue, M. W., & Verfaellie, M. (2017) · Journal of Psychiatric Research · doi:10.1016/j.jpsychires.2017.09.007 · Cited by 81 · see citing works
Engin, E., Zarnowska, E. D., Benke, D., Tsvetkov, E., Sigal, M., Keist, R., Bolshakov, V. Y., Pearce, R. A., & Rudolph, U. (2015) · The Journal of Neuroscience · doi:10.1523/jneurosci.1370-15.2015 · Cited by 79 · see citing works
Brain mechanisms underlying the subjective experience of remembering
Simons, J. S., Ritchey, M., & Fernyhough, C. (2022) · Annual Review of Psychology · doi:10.1146/annurev-psych-030221-025439 · Cited by 70 · see citing works
Poirier, G. L., Amin, E., & Aggleton, J. P. (2008) · The Journal of Neuroscience · doi:10.1523/jneurosci.4607-07.2008 · Cited by 72 · see citing works
Building up and wearing down episodic memory: mnemonic discrimination and relational binding
Ngo, C. T., Lin, Y., Newcombe, N. S., & Olson, I. R. (2019) · Journal of Experimental Psychology General · doi:10.1037/xge0000583 · Cited by 65 · see citing works
Bidirectional Hebbian Plasticity at Hippocampal Mossy Fiber Synapses on CA3 Interneurons
Galván, E. J., Calixto, E., & Barrionuevo, G. (2008) · The Journal of Neuroscience · doi:10.1523/jneurosci.4848-08.2008 · Cited by 63 · see citing works
Gill, K. M., & Grace, A. A. (2014) · The International Journal of Neuropsychopharmacology · doi:10.1017/s146114571400056x · Cited by 60 · see citing works
Sleep in humans stabilizes pattern separation performance
Hanert, A., Weber, F. D., Pedersen, A., Born, J., & Bartsch, T. (2017) · The Journal of Neuroscience · doi:10.1523/jneurosci.1189-17.2017 · Cited by 52 · see citing works
Retrieval-based model accounts for striking profile of episodic memory and generalization
Banino, A., Koster, R., Hassabis, D., & Kumaran, D. (2016) · Scientific Reports · doi:10.1038/srep31330 · Cited by 57 · see citing works
Bein, O., Reggev, N., & Maril, A. (2020) · Nature Communications · doi:10.1038/s41467-020-18364-1 · Cited by 52 · see citing works
Design of a Neurally Plausible Model of Fear Learning
Krasne, F. B., Fanselow, M. S., & Zelikowsky, M. (2011) · Frontiers in Behavioral Neuroscience · doi:10.3389/fnbeh.2011.00041 · Cited by 51 · see citing works
Mayberry, E. J., Sage, K., Ehsan, S., & Lambon Ralph, M. A. (2011) · Neuropsychologia · doi:10.1016/j.neuropsychologia.2011.09.010 · Cited by 47 · see citing works
Structure, biophysics, and circuit function of a “giant” cortical presynaptic terminal
Vandael, D., & Jonas, P. (2024) · Science · doi:10.1126/science.adg6757 · Cited by 45 · see citing works
Levy, W. B., Desmond, N. L., & Zhang, D. X. (1998) · Learning & Memory · doi:10.1101/lm.4.6.510 · Cited by 43 · see citing works
Badre, D., Frank, M. J., & Moore, C. I. (2015) · Neuron · doi:10.1016/j.neuron.2015.10.021 · Cited by 40 · see citing works
Is prediction nothing more than multi-scale pattern completion of the future?
Falandays, J. B., Nguyen, B., & Spivey, M. J. (2021) · Brain Research · doi:10.1016/j.brainres.2021.147578 · Cited by 36 · see citing works
Synapse-specific compartmentalization of signaling cascades for LTP induction in CA3 interneurons
Galván, E. J., Pérez-Rosello, T., Gómez-Lira, G., Lara, E., Gutiérrez, R., & Barrionuevo, G. (2015) · Neuroscience · doi:10.1016/j.neuroscience.2015.01.024 · Cited by 21 · see citing works
Hendrickson, P. J., Yu, G. J., Song, D., & Berger, T. W. (2015) · Frontiers in Systems Neuroscience · doi:10.3389/fnsys.2015.00155 · Cited by 18 · see citing works
Human-inspired Perspectives: A Survey on AI Long-term Memory
He, Z., Lin, W., Zheng, H., Zhang, F., Jones, M. W., Aitchison, L., Xu, X., Liu, M., Kristensson, P. O., & Shen, J. (2024) · arXiv · doi:10.48550/arxiv.2411.00489 · Cited by 3 · see citing works
“It is concluded that the effectiveness of retrieval is enhanced if the process provides cues similar to those used during encoding [25, 91].”
Amer, T., & Davachi, L. (2022) · doi:10.31234/osf.io/32egy · Cited by 3 · see citing works
Flexible Prefrontal Control over Hippocampal Episodic Memory for Goal-Directed Generalization
Zheng, Y., Wolf, N., Ranganath, C., O'Reilly, R. C., & McKee, K. L. (2025) · Proceedings of Cognitive Computational Neuroscience 2025 · doi:10.32470/jnqbpro
Self-citation
- Authors
- O'Reilly, R. C., & McClelland, J. L.
- Affiliations
- Carnegie Mellon University (US)
- Corresponding author
- McClelland, James L.
- ORCID
- McClelland, James L.
- Venue
- Hippocampus
- Publisher
- Wiley
- Published
- 1994-12
- Volume
- 4
- Issue
- 6
- Pages
- 661-682
- ISSN
- 1050-9631 (ISSN-L)
- 1098-1063
- OpenAlex
- W2120629471
- Cited by
- 914
- References
- 7
- Citations by year
- 2026: 28 · 2025: 42 · 2024: 49 · 2023: 40 · 2022: 40 · 2021: 50 · 2020: 36 · 2019: 37 · 2018: 31 · 2017: 40 · 2016: 55 · 2015: 47 · 2014: 55 · 2013: 37 · 2012: 29
- FWCI
- 5.10
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Hippocampus (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institute of Mental Health (MH00385, MH-47566, P01MH047566)
- Topics
- Life Sciences › Neuroscience › Cognitive Neuroscience › Memory and Neural Mechanisms
- Life Sciences › Neuroscience › Cognitive Neuroscience › Neural dynamics and brain function
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Keywords
- pattern separation, pattern completion, entorhinal cortex, dentate gyrus, CA3, mossy fibers, Hebbian synaptic plasticity, long-term potentiation, long-term depression, feedforward pathways, hippocampal anatomy
- MeSH terms
- Algorithms, Animals, Computer Simulation, Hippocampus, Learning, Memory, Models, Neurological, Nerve Fibers, Probability, Mental Recall, Synapses, Neural Networks, Computer, Rats
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