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The Allen Ancient DNA Resource (AADR) a curated compendium of ancient human genomes

Mallick, Swapan, Micco, Adam, Mah, Matthew, Ringbauer, Harald, Lazaridis, Iosif, Olalde, Iñigo, Patterson, Nick, Reich, David·2024·Scientific Data
DOI 10.1038/s41597-024-03031-7PMC PMC10858950

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Abstract

More than two hundred papers have reported genome-wide data from ancient humans. While the raw data for the vast majority are fully publicly available testifying to the commitment of the paleogenomics community to open data, formats for both raw data and meta-data differ. There is thus a need for uniform curation and a centralized, version-controlled compendium that researchers can download, analyze, and reference. Since 2019, we have been maintaining the Allen Ancient DNA Resource (AADR), which aims to provide an up-to-date, curated version of the world’s published ancient human DNA data, represented at more than a million single nucleotide polymorphisms (SNPs) at which almost all ancient individuals have been assayed. The AADR has gone through six public releases at the time of writing and review of this manuscript, and crossed the threshold of >10,000 individuals with published genome-wide ancient DNA data at the end of 2022. This note is intended as a citable descriptor of the AADR.

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Fig. 1 Growth in world’s published human genome-wide ancient DNA data. (A) By year of publication (broken down by geography). (B) By date (color and symbol both indicate geographic location). (C) By geography (using same color and symbol scheme as in previous panel).
Fig. 1 Growth in world’s published human genome-wide ancient DNA data. (A) By year of publication (broken down by geography). (B) By date (color and symbol both indicate geographic location). (C) By geography (using same color and symbol scheme as in previous panel).CC BY · PubMed Central

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Metadata

Authors
Mallick, S., Micco, A., Mah, M., Ringbauer, H., Lazaridis, I., Olalde, I., Patterson, N., & Reich, D.
ORCID
Venue
Scientific Data
Publisher
Springer Science and Business Media LLC
Published
2024-02-10
Volume
11
Issue
1
ISSN
2052-4463
DOI
10.1038/s41597-024-03031-7
PMC
PMC10858950
Cited by
368
References
55
Language
en
Licence
Funders
  • U.S. Department of Health & Human Services | NIH | Center for Information Technology (HG012287)
  • John Templeton Foundation (61220)

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