Programmed cell death in aging
Open accessAbstract
Programmed cell death (PCD) pathways, including apoptosis and regulated necrosis, are required for normal cell turnover and tissue homeostasis. Mis-regulation of PCD is increasingly implicated in aging and aging-related disease. During aging the cell turnover rate declines for several highly-mitotic tissues. Aging-associated disruptions in systemic and inter-cell signaling combined with cell-autonomous damage and mitochondrial malfunction result in increased PCD in some cell types, and decreased PCD in other cell types. Increased PCD during aging is implicated in immune system decline, skeletal muscle wasting (sarcopenia), loss of cells in the heart, and neurodegenerative disease. In contrast, cancer cells and senescent cells are resistant to PCD, enabling them to increase in abundance during aging. PCD pathways limit life span in fungi, but whether PCD pathways normally limit adult metazoan life span is not yet clear. PCD is regulated by a balance of negative and positive factors, including the mitochondria, which are particularly subject to aging-associated malfunction.
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Written from the paper’s full text.
TL;DR
Programmed cell death (PCD) is mis-regulated during aging in a cell-type-specific manner, with increased PCD contributing to immune decline, sarcopenia, heart cell loss, and neurodegeneration, while decreased PCD allows cancer and senescent cells to accumulate. Mitochondrial malfunction is proposed as a central underlying factor, and PCD pathways clearly limit life span in fungi but whether they normally limit adult metazoan life span remains unclear.
Key findings
- Aging is associated with both increased and decreased PCD depending on cell type: increased apoptosis is implicated in thymic involution, T-cell lymphopenia, skeletal muscle wasting, myocyte loss in the heart, and neurodegenerative disease, whereas reduced apoptosis is seen in aging vascular smooth muscle cells, mesenchymal stem cells, and senescent cells.
- Cancer cells and senescent cells resist PCD; p53 is mutated in the majority of human cancers, and senescent human fibroblasts show failure to reduce Bcl-2, reduced caspase-3, and increased Bcl-xL.
- Mitochondria are repeatedly implicated in PCD regulation across mammals, Drosophila, C. elegans, and fungi; mitochondrial malfunction, ROS, and decreased mitophagy are proposed to predispose to maladaptive PCD during aging.
- In fungi, PCD appears to limit life span in both replicative and chronological assays; in C. elegans and Drosophila, canonical caspase-dependent PCD does not appear to limit adult life span, though caspase-independent or necrosis pathways cannot yet be ruled out.
Methods
- Narrative review synthesizing literature on PCD mechanisms and aging across mammalian systems, Drosophila, C. elegans, Saccharomyces cerevisiae, and Podospora anserina.
- No primary experimental data are reported; the paper integrates cited studies on apoptosis, regulated necrosis, autophagic cell death, senescence, cancer, neurodegeneration, and life-span regulation.
- Main analysis is conceptual synthesis, including comparisons of conserved PCD factors and mitochondrial roles across species.
Limitations
- Stated: whether PCD pathways normally limit adult metazoan life span is not yet clear; possible roles for caspase-independent PCD or necrosis in regulating C. elegans and Drosophila life span cannot yet be ruled out.
- Stated: precise mechanisms for cell death in aging-associated neurodegenerative diseases are not clear, and the precise mechanisms for sarcopenia are not yet known.
- Evident: as a narrative review, it does not use a systematic search strategy or quantitative meta-analysis, and many conclusions depend on cited primary studies rather than new data.
Model-written summary. Check it against the paper before relying on it.
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Cites
Statistics
Claims the paper makes
0 of 147 cited sources checked · 0 supported · 0 flagged
- Findingcitation
Aging is associated with decreased PCD in several cell types.
“Aging is associated with decreased PCD in several cell types.”
Quote in the paperSubstantial claim0 of 3 sources checked - Findingcitation
Some cell types are characterized by increased PCD during aging.
“Some cell types are characterized by increased PCD during aging.”
Quote in the paperNot a substantial claim0 of 3 sources checked - Premisenone given
PCD pathways limit life span in fungi.
“PCD pathways limit life span in fungi, but whether PCD pathways normally limit adult metazoan life span is not yet clear.”
Quote in the paperNot a substantial claim - Premisecitation
Programmed cell death (PCD) pathways, including apoptosis and regulated necrosis, are required for normal cell turnover and tissue homeostasis.
“Programmed cell death (PCD) pathways, including apoptosis and regulated necrosis, are required for normal cell turnover and tissue homeostasis.”
- Also stated in: § 2. PCD in normal tissue development, adult homeostasisand aging · plain
“In the adult, PCD is required for the normal turnover of cells in numerous tissues that are maintained by cell division, including the intestinal epithelium, the blood, the epidermis, kidney and lungs(Elmore, 2007; Gunther et al., 2013; Kile, 2014).”
Quote in the paperSubstantial claim0 of 3 sources checked - Also stated in: § 2. PCD in normal tissue development, adult homeostasisand aging · plain
- Premisecitation
During aging the cell turnover rate declines for several highly-mitotic tissues.
“During aging the cell turnover rate declines for several highly-mitotic tissues.”
- Also stated in: § 2. PCD in normal tissue development, adult homeostasisand aging · plain
“For example, dramatically decreased cell turnover rate with age is observed for the skin (Rinnerthaler et al., 2014), and reduced cell turnover rates with age are also reported for the heart (Bergmann et al., 2009) breast epithelium (Misell et al., 2005) and pituitary (Nolan et al., 1999; Richardson et al., 2014).”
Quote in the paperSubstantial claim0 of 3 sources checked - Also stated in: § 2. PCD in normal tissue development, adult homeostasisand aging · plain
- Interpretationnone given
Mis-regulation of PCD is implicated in aging and aging-related disease.
“Mis-regulation of PCD is increasingly implicated in aging and aging-related disease.”
Quote in the paperSubstantial claim - Interpretationnone given
Cancer cells and senescent cells are resistant to PCD, enabling them to increase in abundance during aging.
“In contrast, cancer cells and senescent cells are resistant to PCD, enabling them to increase in abundance during aging.”
Quote in the paperNot a substantial claim - Premisecitation
In many cell types the intrinsic apoptosis pathway can be activated by withdrawal of specific hormones that normally suppress the apoptotic pathway.
“In many cell types the intrinsic pathway can be activated by the withdrawal of specific hormones that normally act to suppress the apoptotic pathway(Raff et al., 1994).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Raff et al., 1994 source
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- Interpretationreasoning
Inactivation or suppression of the p53 pathway is one requirement for the cancer phenotype.
“These results suggest that inactivation or suppression of the p53 pathway is one requirement for the cancer phenotype.”
Quote in the paperSubstantial claim - Premisenone given
p53 is mutated in the majority of human cancers.
“The importance of p53-induced apoptosis as an anti-cancer mechanism is supported by the fact that p53 is mutated in the majority of human cancers.”
Quote in the paperSubstantial claim - Premisecitation
The major players of the apoptotic pathway are largely conserved between mammals and Drosophila and C. elegans.
“The details of the apoptotic pathway differ between mammals and the model organisms Drosophila and C. elegans, however the major players are largely conserved (Figure 1).”
Quote in the paperNot a substantial claim0 of 2 sources checked - Premisecitation
Senescent cells are resistant to apoptosis.
“Senescent cells are resistant to apoptosis (Wang, 1995) and this may be one reason that senescent cells are observed to accumulate during aging in several tissues(Kirkland and Tchkonia, 2014).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Wang, 1995
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- Premisenone given
p53 is activated in response to cellular stress including DNA damage and increased ROS levels.
“p53 is activated in response to cellular stress including DNA damage and increased ROS levels.”
Quote in the paperNot a substantial claim - Premisereasoning
In cancers where p53 is intact, there is typically a mutation in some other component of the p53 pathway.
“Moreover, in cancers where p53 is intact, there is typically a mutation in some other component of the p53 pathway.”
Quote in the paperNot a substantial claim - Premisecitation
In the adult, PCD is required for the normal turnover of cells in numerous tissues that are maintained by cell division, including the intestinal epithelium, the blood, the epidermis, kidney and lungs.
“In the adult, PCD is required for the normal turnover of cells in numerous tissues that are maintained by cell division, including the intestinal epithelium, the blood, the epidermis, kidney and lungs(Elmore, 2007; Gunther et al., 2013; Kile, 2014).”
Quote in the paperNot a substantial claim0 of 3 sources checked - Premisecitation
Correctly regulated PCD and phagocytosis of the resulting cell debris is required to prevent an inappropriate immune response.
“Correctly regulated PCD and phagocytosis of the resulting cell debris is required to prevent an inappropriate immune response (Devitt and Marshall, 2011).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Devitt and Marshall, 2011
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- Premisecitation
In certain cell types the initiation of PCD is associated with up-regulation of cell cycle markers, suggesting PCD may involve a partial entry into the cell cycle.
“In certain cell types the initiation of PCD is associated with up-regulation of cell cycle markers, leading to the suggestion that PCD in these cells may involve a partial entry into the cell cycle.”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Pandey and Wang, 1995
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- cites King and Cidlowski, 1995, 1998
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- Premisereasoning
p53 positively regulates expression of pro-apoptotic factors, including the pro-apoptotic Bcl-2 family member Puma, thereby shifting the balance to favor apoptosis.
“Functioning as a transcription factor p53 positively regulates expression of pro-apoptotic factors, including the pro-apoptotic Bcl-2 family member Puma, thereby shifting the balance to favor apoptosis.”
Quote in the paperNot a substantial claim - Premisecitation
Human serum shows a reduction in markers of apoptosis during normal aging.
“Consistent with these observations, human serum shows a reduction in markers of apoptosis during normal aging (Kavathia et al., 2009).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Kavathia et al., 2009
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- Interpretationreasoning
The general decrease in PCD markers during aging may result in part from a slowing of the normal homeostatic cell turnover rate for several adult tissues.
“One possible interpretation of these results is that the general decrease in PCD markers during aging may result in part from a slowing of the normal homeostatic cell turnover rate for several adult tissues.”
Quote in the paperNot a substantial claim - Premisecitation
p53 protein can physically translocate to the mitochondria where it promotes membrane permeabilization and the release of the mitochondrial pro-apoptotic factors.
“In addition, p53 protein can physically translocate to the mitochondria where it promotes membrane permeabilization and the release of the mitochondrial pro-apoptotic factors(Green and Kroemer, 2009).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Green and Kroemer, 2009 source
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- Interpretationreasoning
The accumulation of senescent cells during aging is implicated as a causal factor in aging-associated inflammation and disruptions of ECM.
“Because of this the accumulation of senescent cells during aging is implicated as a causal factor in aging-associated inflammation and disruptions of ECM.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Tchkonia et al., 2013 source
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- Premisecitation
Senescent cells accumulate during aging in several tissues.
“Senescent cells are resistant to apoptosis (Wang, 1995) and this may be one reason that senescent cells are observed to accumulate during aging in several tissues(Kirkland and Tchkonia, 2014).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Kirkland and Tchkonia, 2014
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- Premisecitation
A decrease in PCD response with age was observed in the liver of rats challenged with the DNA-damaging agent methyl methanesulfonate (MMS).
“A decrease in PCD response with age was observed in the liver of rats challenged with the DNA-damaging agent methyl methanesulfonate (MMS) (Suh et al., 2002), and this reduced PCD was associated with increased phosphorylation of ERKs (extracellular signal-regulated protein kinases) in the old animal tissues (Suh, 2002).”
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- cites Suh, 2002
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- Premisecitation
In mouse, bone marrow mesenchymal stem cells had decreased expression of both cell cycle and PCD genes during aging.
“Similarly, in mouse, bone marrow mesenchymal stem cells had decreased expression of both cell cycle and PCD genes during aging(Wilson et al., 2010).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Wilson et al., 2010 source
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- Interpretationreasoning
Alterations in systemic signaling, including inflammation and ECM disruptions, may combine with cell-autonomous changes such as increased oxidative stress and genomic damage to make certain cell types more sensitive to PCD, particularly when challenged by acute or chronic stress.
“At the same time, alterations in systemic signaling, including inflammation and ECM disruptions, may combine with cell-autonomous changes such as increased oxidative stress and genomic damage to make certain cell types more sensitive to PCD, particularly when challenged by acute or chronic stress.”
Quote in the paperSubstantial claim - Interpretationcitation
Aging-associated disruptions of PCD regulation and phagocytosis may contribute to aging-associated inflammation, including activation of the NFκB signaling pathway.
“Aging-associated disruptions of PCD regulation and phagocytosis may contribute to aging-associated inflammation, including activation of the NFκB signaling pathway (Gupta et al., 2006; Salvioli et al., 2013), (Shaw et al., 2010).”
Quote in the paperSubstantial claim0 of 3 sources checked - Interpretationcitation
Increased apoptosis is implicated in the age-related reduction of T-cell subtypes in the human immune system (T-cell lymphopenia), including both CD4+ and CD8+ T-cells.
“Increased apoptosis is implicated in the age-related reduction of T-cell subtypes in the human immune system (T-cell lymphopenia), including both CD4+ and CD8+ T-cells (Gupta, 2005).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Gupta, 2005 source
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- Premisecitation
In mice, over-expression of the mitochondrial antioxidant enzyme MnSOD reduced PCD in the aging heart.
“In mice, over-expression of the mitochondrial antioxidant enzyme MnSOD reduced PCD in the aging heart, thereby implicating mitochondrial function and oxidative stress (Kwak et al., 2014).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Kwak et al., 2014
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- Interpretationcitation
Both caspase-dependent and caspase-independent mechanisms are implicated in PCD during aging in the mouse heart.
“In addition, mutation of mouse cathepsin K reduced AIG translocation and PCD during aging, resulting in improved heart function and implicating both caspase-dependent and caspase-independent mechanisms(Hua et al., 2015).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Hua et al., 2015
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- Premisecitation
In Drosophila, increased PCD-like events were observed during aging in muscle tissue and in fat tissue, as indicated by DNA fragmentation and caspase activity.
“Increased PCD-like events were observed during aging in muscle tissue and in fat tissue, as indicated by DNA fragmentation and caspase activity (Zheng et al., 2005).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Zheng et al., 2005 source
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- Interpretationcitation
PCD is increasingly implicated in several aging-associated neurodegenerative diseases.
“However, PCD is increasingly implicated in several aging-associated neurodegenerative diseases(Ghavami et al., 2014).”
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- Premisecitation
Mammals exhibit an aging-associated skeletal muscle atrophy called sarcopenia that involves both reductions in muscle fiber size and loss of fibers.
“Mammals exhibit an aging-associated skeletal muscle atrophy called sarcopenia that involves both reductions in muscle fiber size and loss of fibers(Marzetti et al., 2008).”
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- Premisenone given
There was no evidence for a global increase in PCD in Drosophila nervous tissue using these assays.
“In contrast there was no evidence for a global increase in PCD in Drosophila nervous tissue using these assays.”
Quote in the paperSubstantial claim - Premisecitation
A transgenic reporter for caspase-3 activity was activated during aging in a subset of nervous tissue cell types, including the ellipsoid body, the antennal lobe and a sub-set of olfactory receptor neurons.
“However, a transgenic reporter for caspase-3 activity was activated during aging in a subset of nervous tissue cell types, including the ellipsoid body that functions in visual memory, and the antennal lobe and a sub-set of olfactory receptor neurons involved in olfaction(Chihara et al., 2014).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Chihara et al., 2014 source
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- Interpretationreasoning
Only a sub-set of neurons are at risk for loss by PCD-like events during aging.
“Taken together, these studies suggest that only a sub-set of neurons are at risk for loss by PCD-like events during aging.”
Quote in the paperSubstantial claim - Interpretationcitation
Studies in rodents implicate mitochondrial malfunction and abnormal PCD signaling in sarcopenia.
“The precise mechanisms for sarcopenia are not yet known, however studies in rodents implicate mitochondrial malfunction and abnormal PCD signaling (Marzetti et al., 2013).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Marzetti et al., 2013 source
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- Premisecitation
PCD-like events were elevated in the skeletal muscle of aging mice engineered to have greater mitochondrial mutation load.
“Mitochondrial mutations are implicated in sarcopenia because mtDNA deletions co-localized with mitochondrial malfunction in skeletal muscle fibers of aged rats (Wanagat et al., 2001), and PCD-like events were elevated in the skeletal muscle of aging mice engineered to have greater mitochondrial mutation load (Kujoth et al., 2005).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Kujoth et al., 2005 source
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- Premisecitation
Age-related hearing loss involves loss of sensory hair cells via PCD.
“Age-related hearing loss involves loss of sensory hair cells via PCD, and mitochondrial genome mutations are implicated in this process(Fujimoto and Yamasoba, 2014).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Fujimoto and Yamasoba, 2014
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- Premisecitation
In the normal adult brain, activated caspase-3 functions in the remodeling of neuronal processes important for synaptic plasticity and certain forms of memory.
“For example, in the normal adult brain, activated caspase-3 functions in the remodeling of neuronal processes important for synaptic plasticity and certain forms of memory (Snigdha et al., 2012).”
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- Premisecitation
Neurons appear to suppress PCD in part by using glucose metabolism to generate reducing equivalents that prevent oxidation and activation of cytochrome c.
“Neurons appear to suppress PCD in part by using glucose metabolism to generate reducing equivalents that prevent oxidation and activation of cytochrome c (Vaughn and Deshmukh, 2008).”
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- Premisecitation
Rodent models implicate a PCD mechanism in the aging heart involving increased Bax/Bcl-2 ratio, cytochrome c release from mitochondria and Caspase-3 activation.
“Loss of myocytes is observed in the aging heart, and studies in rodent models implicate a PCD mechanism involving increased Bax/Bcl-2 ratio, cytochrome c release from mitochondria and Caspase-3 activation (Kwak, 2013).”
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- Premisecitation
Increased sensitivity to stress and PCD is observed in aging gastric mucosa.
“Finally, increased sensitivity to stress and PCD is observed in aging gastric mucosa, and rodent studies implicate caspase-3 activation (Tarnawski et al., 2014).”
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- Interpretationcitation
Disruption of normal autophagy/mitophagy may contribute to mitochondrial malfunction and thereby promote PCD.
“The data suggest that a disruption of normal autophagy/mitophagy may contribute to mitochondrial malfunction and thereby promote PCD (Ghavami et al., 2014; Hroudova et al., 2014; Nixon and Yang, 2012).”
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- cites Hroudova et al., 2014
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- cites Nixon and Yang, 2012
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- Premisecitation
Rodent studies implicate caspase-3 activation in aging gastric mucosa.
“Finally, increased sensitivity to stress and PCD is observed in aging gastric mucosa, and rodent studies implicate caspase-3 activation (Tarnawski et al., 2014).”
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- Premisecitation
Old mice exhibit a decrease in circulating levels of the growth hormone GDF-11.
“Old mice exhibit a decrease in circulating levels of the growth hormone GDF-11, and restoring GDF-11 levels in the old mouse was sufficient for much of the benefit for muscle function (Sinha et al., 2014).”
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- Premisecitation
Aging-associated hair greying involves loss of melanocyte stem cells by PCD.
“Aging-associated hair greying involves loss of melanocyte stem cells by PCD, and decreased Bcl-2 and increased ROS are implicated in this process (Seiberg, 2013).”
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- Premisecitation
Aging rat soleus muscle showed translocation of Endonuclease G from the mitochondria to the nucleus suggesting a caspase-independent process.
“In contrast, aging rat soleus muscle showed translocation of Endonuclease G from the mitochondria to the nucleus suggesting a caspase-independent process (Leeuwenburgh et al., 2005).”
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Fusion of young and old mouse circulatory systems promoted the proliferative and regenerative capacity of skeletal muscle in the old mouse.
“For example, fusion of young and old mouse circulatory systems promoted the proliferative and regenerative capacity of skeletal muscle in the old mouse (Conboy et al., 2005).”
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- Premisecitation
The aging kidney has increased sensitivity to stress and PCD.
“For example, the aging kidney has increased sensitivity to stress and PCD, and rodent models show decreased levels of Bcl-2, and increases in Bax, cytochrome c and caspase-3 (Wang et al., 2014).”
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- Interpretationreasoning
Only a specific sub-set of neurons are at risk for PCD during aging in Drosophila.
“These studies suggest that only a specific sub-set of neurons are at risk for PCD during aging in Drosophila.”
Quote in the paperSubstantial claim - Interpretationcitation
Several additional tissues show increased sensitivity to induction of PCD during human aging.
“Several additional tissues show increased sensitivity to induction of PCD during human aging.”
Quote in the paperNot a substantial claim - Premisecitation
Mutation of mouse cathepsin K reduced AIG translocation and PCD during aging.
“In addition, mutation of mouse cathepsin K reduced AIG translocation and PCD during aging, resulting in improved heart function and implicating both caspase-dependent and caspase-independent mechanisms(Hua et al., 2015).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Hua et al., 2015
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- Interpretationreasoning
Altered systemic signaling plays a role in heart aging.
“Finally, increasing GDF-11 levels in the aging mouse had a benefit for heart function, indicating a role for altered systemic signaling in heart aging.”
Quote in the paperSubstantial claim- Rests on an assumption: Increasing GDF-11 levels in the aging mouse has a benefit for heart function.
- Premisecitation
Mutation of mouse cathepsin K resulted in improved heart function.
“In addition, mutation of mouse cathepsin K reduced AIG translocation and PCD during aging, resulting in improved heart function and implicating both caspase-dependent and caspase-independent mechanisms(Hua et al., 2015).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Hua et al., 2015
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- Premisecitation
Mitochondrial genome mutations are implicated in age-related hearing loss.
“Age-related hearing loss involves loss of sensory hair cells via PCD, and mitochondrial genome mutations are implicated in this process(Fujimoto and Yamasoba, 2014).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Fujimoto and Yamasoba, 2014
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- Premisecitation
Restoring GDF-11 levels in the old mouse was sufficient for much of the benefit for muscle function.
“Old mice exhibit a decrease in circulating levels of the growth hormone GDF-11, and restoring GDF-11 levels in the old mouse was sufficient for much of the benefit for muscle function (Sinha et al., 2014).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Sinha et al., 2014 source
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- Interpretationcitation
Mitochondrial mutations are implicated in sarcopenia because mtDNA deletions co-localized with mitochondrial malfunction in skeletal muscle fibers of aged rats.
“Mitochondrial mutations are implicated in sarcopenia because mtDNA deletions co-localized with mitochondrial malfunction in skeletal muscle fibers of aged rats (Wanagat et al., 2001), and PCD-like events were elevated in the skeletal muscle of aging mice engineered to have greater mitochondrial mutation load (Kujoth et al., 2005).”
Quote in the paperSubstantial claim0 of 2 sources checked - Premisecitation
Increased or altered p53 activity is found to correlate with AD.
“Increased or altered p53 activity is found to correlate with AD (Lanni et al., 2012), and animal model studies implicate a PARP-dependent programmed-necrosis pathway in PD (Lee et al., 2014).”
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Animal model studies implicate a PARP-dependent programmed-necrosis pathway in PD.
“Increased or altered p53 activity is found to correlate with AD (Lanni et al., 2012), and animal model studies implicate a PARP-dependent programmed-necrosis pathway in PD (Lee et al., 2014).”
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- Premisecitation
C. elegans contains a single caspase gene ced-3 that is required for developmentally regulated PCD.
“C. elegans contains a single caspase gene ced-3 that is required for developmentally regulated PCD (Reddien and Horvitz, 2004).”
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- Interpretationcitation
C. elegans life span is not regulated by a canonical caspase-dependent PCD.
“Mutation of ced-3 was reported not to affect adult life span, suggesting that C. elegans life span is not regulated by a canonical caspase-dependent PCD(Garigan et al., 2002), however a possible role for caspase-independent PCD or necrosis pathways in regulating C. elegans life span cannot yet be ruled out.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Garigan et al., 2002 source
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- Premisecitation
The C. elegans gonad hypertrophy phenotype is more severe in cep-1 (p53-related gene) mutants.
“This phenotype is more severe in cep-1 (p53-related gene) mutants, suggesting an aging-associated loss of normal germ-line PCD activity (Andux and Ellis, 2008; McGee et al., 2012).”
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- cites McGee et al., 2012
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- Interpretationreasoning
There is an aging-associated loss of normal germ-line PCD activity in C. elegans.
“This phenotype is more severe in cep-1 (p53-related gene) mutants, suggesting an aging-associated loss of normal germ-line PCD activity (Andux and Ellis, 2008; McGee et al., 2012).”
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- cites McGee et al., 2012
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Over-expression of Pep4 increased chronological life span associated with decreased necrotic-like PCD.
“In turn, over-expression of Pep4 increased chronological life span associated with decreased necrotic-like PCD.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Carmona-Gutierrez et al., 2011 source
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- Premisecitation
For several genotypes the Podospora anserina culture will grow for 3-5 weeks and then enter senescence marked by mitochondrial DNA instabilities, increased ROS, mitochondrial fission, accumulation of pigment and cell death.
“For several genotypes the culture will grow for 3-5 weeks and then enter senescence marked by mitochondrial DNA instabilities, increased ROS, mitochondrial fission, accumulation of pigment and cell death (Gredilla et al., 2006; Osiewacz et al., 2010).”
Quote in the paperSubstantial claim0 of 2 sources checked - Premisecitation
With both the replicative and chronological life span assays, S. cerevisiae cells appear to die through a type of PCD.
“Aging has been studied in Saccharomyces cerevisiae using two different approaches, the replicative life span assay and the chronological life span assay (Longo et al., 2012), and with both methods the cells appear to die through a type of PCD.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Longo et al., 2012 source
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- Premisecitation
Deletion of YBH3 was reported to increase both replicative and chronological life span.
“Deletion of YBH3 was reported to increase both replicative and chronological life span (Buttner et al., 2011).”
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Several genes have been identified that function in yeast PCD similarly to PCD regulators in mammals.
“Several genes have been identified that function in yeast PCD similarly to PCD regulators in mammals (Figure 1)(Carmona-Gutierrez et al., 2010a).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Carmona-Gutierrez et al., 2010a
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Loss of normal signaling from motorneurons has been implicated in C. elegans sarcopenia.
“The possible role of PCD in the C. elegans sarcopenia is not known, however a loss of normal signaling from motorneurons has been implicated (Liu et al., 2013).”
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- Premisecitation
Cell death in the S. cerevisiae chronological aging assay has been described as a PCD based on both morphological and genetic criteria.
“Cell death in the Saccharomyces cerevisiae chronological aging assay has also been described as a PCD based on both morphological and genetic criteria (Fabrizio et al., 2004; Herker et al., 2004).”
Quote in the paperNot a substantial claim0 of 2 sources checked - Interpretationcitation
The pro-apoptotic role of ROS, mitochondrial DNA rearrangements and release of pro-apoptotic factors from permeabilized mitochondria suggests that a failure in mitochondrial maintenance may contribute to the increased sensitivity to PCD during fungal aging.
“The pro-apoptotic role of ROS, mitochondrial DNA rearrangements and release of pro-apoptotic factors from permeabilized mitochondria suggests that a failure in mitochondrial maintenance may contribute to the increased sensitivity to PCD during fungal aging(Bernhardt et al., 2014), similar to the situation in mammals.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Bernhardt et al., 2014 source
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- Premisecitation
Over-expression of caspase inhibitors p35 and DIAP1 in adult flies did not affect life span.
“Over-expression of caspase inhibitors p35 and DIAP1 in adult flies did not affect life span, suggesting that adult fly life span is not limited by a canonical caspase-dependent PCD(Shen et al., 2009), however a possible role for caspase-independent PCD or necrosis pathways in regulating adult fly life span cannot yet be ruled out.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Shen et al., 2009
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- Interpretationcitation
In humans the observed systemic decrease in PCD markers during aging is likely linked to the decrease in cell turnover rate observed for highly-mitotic tissues such as skin and blood.
“In humans the observed systemic decrease in PCD markers during aging(Kavathia et al., 2009)is likely to be linked to the decrease in cell turnover rate observed for highly-mitotic tissues such as skin and blood.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Kavathia et al., 2009
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- Premisecitation
Deletion of DNM1 also increased replicative life span.
“Notably deletion of DNM1 also increased replicative life span (Scheckhuber et al., 2007).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Scheckhuber et al., 2007 source
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- Premisecitation
Mutation of ced-3 was reported not to affect adult life span.
“Mutation of ced-3 was reported not to affect adult life span, suggesting that C. elegans life span is not regulated by a canonical caspase-dependent PCD(Garigan et al., 2002), however a possible role for caspase-independent PCD or necrosis pathways in regulating C. elegans life span cannot yet be ruled out.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Garigan et al., 2002 source
Not checked in the free run.
- Interpretationreasoning
Studies in fungi suggest conservation of several aspects of PCD with mammals, including a critical regulatory role for the mitochondria.
“Taken together the studies in fungi suggest conservation of several aspects of PCD with mammals, including a critical regulatory role for the mitochondria.”
Quote in the paperSubstantial claim - Premisecitation
PCD can also occur during meiosis of diploid yeast cells, where it is regulated by histone H2B phosphorylation.
“PCD can also occur during meiosis of diploid yeast cells, where it is regulated by histone H2B phosphorylation (Ahn et al., 2006; Ahn et al., 2005).”
Quote in the paperNot a substantial claim0 of 2 sources checked - Premisecitation
The canonical caspase-dependent C. elegans PCD pathway was recently found to be required for increased life span caused by ETC mutants and retrograde ROS signaling.
“Intriguingly, the canonical caspase-dependent C. elegans PCD pathway was recently found to be required for increased life span caused by ETC mutants and retrograde ROS signaling (Yee et al., 2014), in the absence of overt PCD.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Yee et al., 2014 source
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- Interpretationcitation
Adult fly life span is not limited by a canonical caspase-dependent PCD.
“Over-expression of caspase inhibitors p35 and DIAP1 in adult flies did not affect life span, suggesting that adult fly life span is not limited by a canonical caspase-dependent PCD(Shen et al., 2009), however a possible role for caspase-independent PCD or necrosis pathways in regulating adult fly life span cannot yet be ruled out.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Shen et al., 2009
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- Premisecitation
Ras/PKA and TOR/Sch9 signaling pathways promote translation and growth and suppress longevity in response to nutrients.
“In addition, the Ras/PKA and TOR/Sch9 signaling pathways were found to promote translation and growth and suppress longevity in response to nutrients (Powers et al., 2006).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Powers et al., 2006 source
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- Premisecitation
Deletion of the conserved mitochondrial fission regulator PaDnm1 dramatically extended Podospora anserina life span.
“Deletion of the conserved mitochondrial fission regulator PaDnm1 dramatically extended Podospora anserina life span (Scheckhuber et al., 2007).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Scheckhuber et al., 2007 source
Not checked in the free run.
- Interpretationreasoning
Studies with yeast indicate multiple mechanisms for PCD involving factors released from the mitochondria, similar to the situation in mammals.
“The studies with yeast therefore indicate multiple mechanisms for PCD involving factors released from the mitochondria, similar to the situation in mammals.”
Quote in the paperSubstantial claim - Interpretationreasoning
In fungi PCD appears to limit life span in both replicative and chronological assays.
“In the fungi PCD appears to limit life span in both replicative and chronological assays.”
Quote in the paperSubstantial claim - Interpretationcitation
The C. elegans PCD pathway has a potentially ancient function in mediating retrograde mitochondrial ROS signaling and altered nuclear gene expression independent of its function in regulating PCD.
“The data suggest a potentially ancient function for the pathway in mediating retrograde mitochondrial ROS signaling and altered nuclear gene expression independent of its function in regulating PCD.”
Quote in the paperSubstantial claim - Premisecitation
S. cerevisiae was also found to undergo a form of programmed necrosis.
“Saccharomyces cerevisiae was also found to undergo a form of programmed necrosis (Carmona-Gutierrez et al., 2011).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Carmona-Gutierrez et al., 2011 source
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- Interpretationreasoning
Several aspects of the observed mis-regulation of PCD during aging support the idea that mitochondrial malfunction is a key underlying factor.
“Several aspects of the observed mis-regulation of PCD during aging support the idea that mitochondrial malfunctionis a key underlying factor.”
Quote in the paperSubstantial claim - Premisecitation
Decreased mitophagy is associated with aging across multiple species.
“Decreased mitophagy will result in longer-lived and more damage-prone mitochondria, and decreased mitophagy is associated with aging across multiple species (Gelino and Hansen, 2012; Liu et al., 2014; Richard et al., 2013).”
Quote in the paperSubstantial claim0 of 3 sources checked- cites Gelino and Hansen, 2012
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- cites Liu et al., 2014 source
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- cites Richard et al., 2013
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- Premisecitation
Mitochondrial mutations are increasingly implicated in mitochondrial malfunction during aging.
“The mitochondrial genome has a high mutation rate, and mitochondrial mutations are increasingly implicated in mitochondrial malfunction during aging(Schon et al., 2012; Sevini et al., 2014).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Schon et al., 2012 source
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- cites Sevini et al., 2014 source
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- Rests on an assumption: The mitochondrial genome has a high mutation rate.
- Interpretationcitation
The uni-parental inheritance of mitochondrial genomes may create genetic conflicts (sexual antagonistic pleiotropy) that cause mitochondrial functions, including PCD, to be particularly susceptible to aging-associated disruptions, including sex-biased mis-regulation.
“Finally, the uni-parental inheritance of mitochondrial genomes may create genetic conflicts (sexual antagonistic pleiotropy) that cause mitochondrial functions, including PCD, to be particularly susceptible to aging-associated disruptions, including sex-biased mis-regulation(Maklakov and Lummaa, 2013; Tower, 2006, 2014).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Maklakov and Lummaa, 2013 source
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- cites Tower, 2006, 2014
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Interpretationcitation
The global decrease in coordinated cell birth and PCD might in turn result from mitochondrial malfunction and the aging-associated decrease in resting metabolic rate.
“This global decrease in coordinated cell birth and PCD might in turn result from mitochondrial malfunction and the aging-associated decrease in resting metabolic rate (Fukagawa et al., 1990).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Fukagawa et al., 1990
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- Interpretationcitation
Because mitophagy is important in clearing mutated mitochondrial genomes from the cell, the decrease in mitophagy with age may be involved in the accumulation of mutated mitochondrial genomes that favor mitochondrial malfunction, including maladaptive PCD.
“Because mitophagy is important in clearing mutated mitochondrial genomes from the cell, the decrease in mitophagy with age may be involved in the accumulation of mutated mitochondrial genomes that favor mitochondrial malfunction, including maladaptive PCD(Tower, 2014).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Tower, 2014
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- May combine two claims. 41
- Classified as probably not a substantial claim. 5
May combine two claims.
FindingcitationAging is associated with mis-regulation of PCD, with PCD more active than optimal in some cell types and less active than optimal in others.
“Aging appears to be associated with mis-regulation of PCD, in that PCD appears to be more active than is optimal in certain cell types, and less active than is optimal in other cell types (Gupta, 2005; Higami and Shimokawa, 2000; Lu et al., 2012; Salminen et al., 2011; Shen and Tower, 2009; Warner, 1997).”
Quote in the paperSubstantial claim0 of 3 sources checked- cites Gupta, 2005
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- cites Higami and Shimokawa, 2000
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- cites Lu et al., 2012
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- Rests on an assumption: There is an optimal level of PCD in young organisms, so deviations during aging constitute mis-regulation.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisenone givenCells contain a mix of pro-apoptotic and anti-apoptotic Bcl-2 family proteins and are poised for entry into apoptosis if the balance is sufficiently altered.
“Cells contain a mix of pro-apoptotic and anti-apoptotic “Bcl-2 family” proteins and are poised for entry into the apoptotic pathway if and when the balance is sufficiently altered.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningIncreased PCD during aging is implicated in immune system decline, skeletal muscle wasting (sarcopenia), loss of cells in the heart, and neurodegenerative disease.
“Increased PCD during aging is implicated in immune system decline, skeletal muscle wasting (sarcopenia), loss of cells in the heart, and neurodegenerative disease.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningAging-associated disruptions in systemic and inter-cell signaling combined with cell-autonomous damage and mitochondrial malfunction result in increased PCD in some cell types, and decreased PCD in other cell types.
“Aging-associated disruptions in systemic and inter-cell signaling combined with cell-autonomous damage and mitochondrial malfunction result in increased PCD in some cell types, and decreased PCD in other cell types.”
- Also stated in: § 2. PCD in normal tissue development, adult homeostasisand aging · plain
“In summary, aging-associated disruptions in systemic and inter-cell signaling combined with cell-autonomous effects result in increased susceptibility to PCD in some cell types, and decreased PCD in other cell types.”
Quote in the paperSubstantial claim- Also stated in: § 2. PCD in normal tissue development, adult homeostasisand aging · plain
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationNecrotic cell death typically causes a strong immune response, whereas PCD does not.
“In addition, necrotic cell death typically causes a strong immune response, whereas PCD does not (Proskuryakov and Gabai, 2010; Taylor et al., 2008).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Proskuryakov and Gabai, 2010
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- cites Taylor et al., 2008
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Premisenone givenPCD is regulated by a balance of negative and positive factors, including the mitochondria, which are particularly subject to aging-associated malfunction.
“PCD is regulated by a balance of negative and positive factors, including the mitochondria, which are particularly subject to aging-associated malfunction.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Premisenone givenMitochondria play a central role in regulating the apoptotic pathway and caspase activation in mammalian cells.
“The mitochondria play a central role in regulating the apoptotic pathway and caspase activation in mammalian cells.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationPCD and necrosis mechanisms can sometimes overlap, and necrosis is a more regulated process than was previously assumed.
“However, more recently it has become clear that the PCD and necrosis mechanisms can sometimes overlap, and that necrosis is a more regulated process than was previously assumed(Galluzzi et al., 2012).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Galluzzi et al., 2012 source
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PremisecitationIn vivo inhibition of caspase activity does not prevent cell death, but shifts the mechanism towards a more necrotic phenotype.
“Recent studies in mice reveal that in vivo inhibition of caspase activity does not prevent cell death, but rather shifts the mechanism towards a more necrotic phenotype (Galluzzi et al., 2015).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Galluzzi et al., 2015 source
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PremisecitationPCD is an important anti-cancer mechanism and the p53 pathway is a critical mediator of this response.
“PCD is an important anti-cancer mechanism and the p53 pathway is a critical mediator of this response (Vazquez et al., 2008).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Vazquez et al., 2008
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Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationProgrammed necrosis is caspase-independent and can be subdivided depending on the involvement of specific factors.
“Programmed necrosis is caspase-independent and can be further subdivided depending on the involvement of specific factors.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Degterev et al., 2014
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PremisecitationRadiation-induced apoptosis in isolated peripheral blood lymphocytes is significantly reduced in cells isolated from aged mice and from older human patients.
“Radiation challenge will induce apoptosis in isolated peripheral blood lymphocytes, and this response is significantly reduced in cells isolated from aged mice (Polyak et al., 1997), as well as cells isolated from older human patients (Camplejohn et al., 2003).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites Polyak et al., 1997
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- cites Camplejohn et al., 2003
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PremisecitationIn humans, aging caused decreased expression of apoptosis genes and increased expression of senescence-related genes in adipose mesenchymal stem cells.
“For example, in humans, aging caused decreased expression of apoptosis genes and increased expression of senescence-related genes in adipose mesenchymal stem cells (Alt et al., 2012).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Alt et al., 2012
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PremisecitationPCD plays important roles during human development, including the destruction of cells to create the spaces between the digits of the hands and feet, and the structures of the brain.
“PCD plays important roles during human development, including the destruction of cells to create the spaces between the digits of the hands and feet (Chimal-Monroy et al., 2011; Hernandez-Martinez and Covarrubias, 2011), and the structures of the brain (Burek and Oppenheim, 1996; Oppenheim, 1991).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites Chimal-Monroy et al., 2011
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- cites Hernandez-Martinez and Covarrubias, 2011
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- cites Burek and Oppenheim, 1996
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PremisecitationIn humans, vascular injury-induced neointima formation is greater in older patients due in part to excessive proliferation and reduced apoptosis of vascular smooth muscle cells, and the same result is observed in aging mice.
“In humans vascular injury can lead to neointima (scar) formation. This response is greater in older patients due in part to the excessive proliferation and reduced apoptosis of vascular smooth muscle cells (VSMCs), and the same result is observed in aging mice (Vazquez-Padron et al., 2004).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Vazquez-Padron et al., 2004
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PremisecitationMacroautophagy is typically a protective and anti-apoptotic mechanism, and therefore autophagic cell death may involve hyper-activation of a normally beneficial process.
“Notably, macroautophagy is typically a protective and anti-apoptotic mechanism, and therefore autophagic cell death may involve hyper-activation of a normally beneficial process.”
Quote in the paperNot a substantial claim0 of 2 sources checkedMay combine two claims.
PremisecitationDuring aging there is a significant loss of cells in the thymus (thymus involution) and bone marrow, associated with an age-related increase in the number of apoptotic lymphocytes.
“During aging there is a significant loss of cells in the thymus (thymus involution) and bone marrow, associated with an age-related increase in the number of apoptotic lymphocytes (Sainz et al., 2003).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Sainz et al., 2003
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PremisecitationResistance to anoikis is a hallmark of metastatic cancers.
“Anoikis can proceed through either the intrinsic or extrinsic apoptosis pathway depending on the cell type, and importantly, resistance to anoikis is a hallmark of metastatic cancers (Taddei et al., 2012; Zhong and Rescorla, 2012).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Taddei et al., 2012
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- cites Zhong and Rescorla, 2012
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InterpretationcitationMis-regulated apoptosis has been implicated in the age-associated increase in fibrotic lung disease in two ways: increased sensitivity to apoptosis in alveolar epithelial cells may lead to greater injury, whereas reduced sensitivity to apoptosis in fibroblasts and myofibroblasts may promote fibrosis.
“For example, mis-regulated apoptosis has been implicated in the age-associated increase in fibrotic lung disease in two ways: increased sensitivity to apoptosis in alveolar epithelial cells may lead to greater injury, whereas reduced sensitivity to apoptosis in fibroblasts and myofibroblasts may promote fibrosis (Kapetanaki et al., 2013).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Kapetanaki et al., 2013
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PremisecitationAging in the mammalian heart is characterized by a loss of myocytes and hypertrophy of the remaining myocytes.
“Aging in the mammalian heart is characterized by a loss of myocytes and hypertrophy of the remaining myocytes (Olivetti et al., 1991).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Olivetti et al., 1991
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PremisecitationGenetic and chemical interventions can preferentially kill senescent cells in vivo in mice, and these interventions had health benefits for mouse models with elevated levels of senescent cells.
“Recently both genetic and chemical interventions have been described that can preferentially kill senescent cells in vivo in mice, and these interventions had health benefits for mouse models with elevated levels of senescent cells (Zhu et al., 2015).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Zhu et al., 2015
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Premisenone givenEach of the aging-associated neurodegenerative diseases Alzheimer's disease, Parkinson's disease and Huntington's disease involves the accumulation of abnormal proteins and aggregates.
“Each of the aging-associated neurodegenerative diseases Alzheimer's disease (AD), Parkinson's disease (PD) and Huntington's disease (PD) involves the accumulation of abnormal proteins and aggregates.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationIn C. elegans, muscles undergo an aging-related ultrastructural deterioration (sarcopenia), whereas nervous system ultrastructure remains largely intact.
“In the model organism C. elegans the muscles undergo an aging-related ultrastructural deterioration (also referred to as sarcopenia), whereas nervous system ultrastructure remains largely intact(Herndon et al., 2002).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Herndon et al., 2002 source
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InterpretationcitationMitochondrial function and oxidative stress are implicated in PCD in the aging heart.
“In mice, over-expression of the mitochondrial antioxidant enzyme MnSOD reduced PCD in the aging heart, thereby implicating mitochondrial function and oxidative stress (Kwak et al., 2014).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Kwak et al., 2014
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PremisecitationRodent models show decreased levels of Bcl-2 and increases in Bax, cytochrome c and caspase-3 in the aging kidney.
“For example, the aging kidney has increased sensitivity to stress and PCD, and rodent models show decreased levels of Bcl-2, and increases in Bax, cytochrome c and caspase-3 (Wang et al., 2014).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Wang et al., 2014
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PremisecitationDecreased Bcl-2 and increased ROS are implicated in aging-associated hair greying.
“Aging-associated hair greying involves loss of melanocyte stem cells by PCD, and decreased Bcl-2 and increased ROS are implicated in this process (Seiberg, 2013).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Seiberg, 2013
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PremisecitationAging rat gastrocnemius muscle showed increased levels of Bax, decreased Bcl-2, activation of caspase-3 and DNA fragmentation.
“For example, aging rat gastrocnemius muscle showed increased levels of Bax, decreased Bcl-2, activation of caspase-3 and DNA fragmentation (Song et al., 2006).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Song et al., 2006 source
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PremisecitationOlfactory receptor neurons had increased PARP levels and DNA fragmentation, and were sometimes lost through PCD.
“The olfactory receptor neurons also had increased PARP levels and DNA fragmentation, and were sometimes lost through PCD.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Chihara et al., 2014
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PremisecitationThe number of neurons does not decrease on a global scale during normal aging in humans or other mammals, indicating a general absence of PCD during normal brain aging.
“The number of neurons does not decrease on a global scale during normal aging in humans or other mammals, indicating a general absence of PCD during normal brain aging (Andersen et al., 2003; Giannaris and Rosene, 2012; Long et al., 1999; Merrill et al., 2001; Rapp and Gallagher, 1996).”
Quote in the paperSubstantial claim0 of 3 sources checked- cites Andersen et al., 2003
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- cites Giannaris and Rosene, 2012
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- cites Long et al., 1999
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PremisecitationNeural tissue is rich in iron, and iron levels increase with age and in neurodegenerative disease.
“Moreover, neural tissue is rich in iron, and iron levels have been observed to further increase with age and in neurodegenerative disease(Oshiro et al., 2011).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Oshiro et al., 2011
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PremisecitationThe yeast gene Pep4 is related to mammalian cathepsin D, and deletion of Pep4 shortened chronological life span.
“The yeast gene Pep4 is related to mammalian cathepsin D, and deletion of Pep4 shortened chronological life span.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Carmona-Gutierrez et al., 2011
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PremisecitationDeletion of mitochondrial AIF-like factors PaAIF2 and PaAMID2 caused increased resistance to oxidative stress and increased life span independent of metacaspase activity, indicative of a metacaspase-independent PCD.
“In addition, deletion of mitochondrial AIF-like factors PaAIF2 and PaAMID2 caused increased resistance to oxidative stress and increased life span independent of metacaspase activity, indicative of a metacaspase-independent PCD (Brust et al., 2010b).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Brust et al., 2010b
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InterpretationreasoningStudies with model systems support the conclusion that aging can cause increased susceptibility to apoptosis in some cell types, and decreased apoptosis in other cell types.
“Taken together the studies with the model systems support the conclusion that aging can cause increased susceptibility to apoptosis in some cell types, and decreased apoptosis in other cell types.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationMating type pheromone can induce PCD in S. cerevisiae haploid cells of the corresponding mating type that fail to mate; low levels of hormone promote mating whereas high levels promote PCD.
“Mating type pheromone can induce PCD in Saccharomyces cerevisiae haploid cells of the corresponding mating type that fail to mate (Severin and Hyman, 2002); low levels of hormone promote mating whereas high levels promote PCD.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Severin and Hyman, 2002
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PremisecitationAn IAP-like protein called BIR1 was identified, and over-expression of BIR1 could both reduce PCD and extend chronological life span.
“An IAP-like protein called BIR1 was identified, and over-expression of BIR1 could both reduce PCD and extend chronological life span (Walter et al., 2006).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Walter et al., 2006
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PremisecitationDeletion of the S. cerevisiae metacaspase YCA1 increased resistance to PCD caused by stressors such as hydrogen peroxide and also increased chronological life span.
“Deletion of the Saccharomyces cerevisiae metacaspase YCA1 increased resistance to PCD caused by stressors such as hydrogen peroxide and also increased chronological life span (Herker et al., 2004; Madeo et al., 2002).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Herker et al., 2004 source
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- cites Madeo et al., 2002
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PremisecitationAn AIF-like gene called AIF1 was identified and deletion of AIF1 was reported to delay chronological aging.
“An AIF-like gene called AIF1 was identified and deletion of AIF1 was reported to delay chronological aging (Wissing et al., 2004).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Wissing et al., 2004
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PremisecitationOver-expression of YBH3 sensitized cells to PCD caused by hydrogen peroxide, but this death was not dependent upon YCA1, AIF1, NMA111 or NUC1.
“Over-expression of YBH3 sensitized cells to PCD caused by hydrogen peroxide, however this death was not dependent upon YCA1, AIF1, NMA111 or NUC1.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Buttner et al., 2011
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PremisecitationIn mammals, Cyclophilin D interacts with the F1F0-ATP synthase and regulates mitochondrial membrane permeabilization and a programmed-necrosis form of PCD.
“In mammals, the peptidyl-cis,trans-prolyl-isomerase called Cyclophilin D interacts with the F1F0-ATP synthase and regulates mitochondrial membrane permeabilization and a programmed-necrosis form of PCD (Elrod and Molkentin, 2013; Giorgio et al., 2013).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Elrod and Molkentin, 2013
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- cites Giorgio et al., 2013
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PremisecitationAged mother cells showed characteristics of PCD including increased markers of ROS, nuclear DNA fragmentation as indicated by TUNEL labeling, and phosphatidylserine externalization as indicated by Annexin V staining.
“Aged mother cells showed characteristics of PCD including increased markers of ROS, nuclear DNA fragmentation as indicated by TUNEL labeling, and phosphatidylserine externalization as indicated by Annexin V staining (Laun et al., 2001).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Laun et al., 2001
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PremisecitationA yeast homolog of EndoG (NUC1) has opposing roles in cell death in the chronological assay: on glucose media deletion of NUC1 increased cell death, whereas on glycerol media deletion of NUC1 increased life span and increased resistance to hydrogen peroxide induced PCD.
“A yeast homolog of EndoG was identified (NUC1) that has opposing roles in cell death in the chronological assay: on glucose media deletion of NUC1 increased cell death, whereas on glycerol media deletion of NUC1 increased life span and increased resistance to hydrogen peroxide induced PCD (Buttner et al., 2007).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Buttner et al., 2007 source
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PremisecitationIn the replicative aging assay, approaching 25 divisions the mother cell becomes larger, buds less frequently and ultimately dies by lysis.
“Approaching 25 divisions the mother cell becomes larger, buds less frequently and ultimately dies by lysis(Egilmez and Jazwinski, 1989).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Egilmez and Jazwinski, 1989
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PremisecitationThe gene DNM1 promoted mitochondrial fission and PCD in response to hydrogen peroxide, whereas the conserved mitochondrial morphology regulator FIS1 inhibited fission and YCA1-dependent cell death.
“The gene DNM1 promoted mitochondrial fission and PCD in response to hydrogen peroxide, whereas the conserved mitochondrial morphology regulator FIS1 inhibited fission and YCA1-dependent cell death (Fannjiang et al., 2004).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Fannjiang et al., 2004
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The paper relies on this without support.
Changes in PCD markers (such as gene expression, caspase activation, and DNA fragmentation) reflect actual PCD activity and cell loss in aging tissues.
“The expression of PCD markers correlates with aging and sarcopenia in specific rodent muscle tissues.”
The paper relies on this without support.
Findings from rodent models and cultured cells generalize to human aging.
“Studies in rodents implicate mitochondrial malfunction and abnormal PCD signaling (Marzetti et al., 2013).”
The paper relies on this without support.
There is an optimal level of PCD in young organisms, so deviations during aging constitute mis-regulation.
“PCD appears to be more active than is optimal in certain cell types, and less active than is optimal in other cell types”
The paper relies on this without support.
PCD is required for normal tissue homeostasis in the adult.
“Because PCD is required for normal tissue homeostasis in the adult, it is expected to be important for optimal life span in species such as mammals where multiple tissues are maintained by constant cell turnover.”
The paper relies on this without support.
In mammals, PCD is required for normal development and adult tissue homeostasis.
“In mammals PCD is required for normal development and adult tissue homeostasis, which complicates investigation of possible roles for PCD in mammalian life span regulation.”
The paper relies on this without support.
The mitochondrial genome has a high mutation rate.
“The mitochondrial genome has a high mutation rate, and mitochondrial mutations are increasingly implicated in mitochondrial malfunction during aging(Schon et al., 2012; Sevini et al., 2014).”
The paper relies on this without support.
Increasing GDF-11 levels in the aging mouse has a benefit for heart function.
“Finally, increasing GDF-11 levels in the aging mouse had a benefit for heart function, indicating a role for altered systemic signaling in heart aging.”
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For the thymus, heart, and other tissues, there is a progressive decline in cell number with age due to apoptotic cell death.
“For example, for the thymus, heart, and other tissues,52,53 there a progressive decline in cell number with age due to apoptotic cell death.”
From Asynchronous, contagious and digital aging (2021) · cites this paper as [53]
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Sex-Specific Gene Expression and Life Span Regulation
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Exercise, Autophagy, and Apoptosis
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l-Arginine and Beetroot Extract Supplementation in the Prevention of Sarcopenia
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- Authors
- Tower, J.
- Affiliations
- University of Southern California (US)
- Corresponding author
- Tower, John
- ORCID
- Tower, John
- Venue
- Ageing Research Reviews
- Publisher
- Elsevier BV
- Published
- 2015-09
- Volume
- 23
- Issue
- Pt A
- Pages
- 90-100
- ISSN
- 1568-1637 (ISSN-L)
- PMC
- PMC4480161
- OpenAlex
- W2054502486
- Semantic Scholar
- bb13358b6cc1885d5b506b5f182f4d298bad824e
- Cited by
- 426
- References
- 196
- Citations by year
- 2026: 22 · 2025: 42 · 2024: 79 · 2023: 63 · 2022: 56 · 2021: 43 · 2020: 37 · 2019: 15 · 2018: 21 · 2017: 18 · 2016: 22 · 2015: 8
- FWCI
- 2.23
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Ageing Research Reviews (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Department of Health and Human Services (AG011833)
- Southern California Environmental Health Sciences Center (5P30ES007048)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Cell death mechanisms and regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Aging › Genetics, Aging, and Longevity in Model Organisms
- Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
- Keywords
- programmed cell death, aging, apoptosis, regulated necrosis, cell turnover, tissue homeostasis, mitochondrial dysfunction, immune system decline, sarcopenia, neurodegenerative diseases, cellular senescence, lifespan
- MeSH terms
- Aging, Animals, Homeostasis, Humans, Cellular Senescence, Cell Death, Apoptosis, Neurodegenerative Diseases
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-10.
Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-10.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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